Citrus Sinensis ID: 038568
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | 2.2.26 [Sep-21-2011] | |||||||
| Q5SRY7 | 542 | F-box/WD repeat-containin | yes | no | 0.498 | 0.328 | 0.304 | 7e-14 | |
| Q9UKB1 | 542 | F-box/WD repeat-containin | no | no | 0.498 | 0.328 | 0.3 | 1e-13 | |
| C4YFX2 | 511 | Transcriptional repressor | N/A | no | 0.523 | 0.365 | 0.295 | 1e-12 | |
| P0CY34 | 512 | Transcriptional repressor | N/A | no | 0.523 | 0.365 | 0.295 | 1e-12 | |
| Q09990 | 665 | F-box/WD repeat-containin | yes | no | 0.498 | 0.267 | 0.286 | 1e-12 | |
| P90648 | 732 | Myosin heavy chain kinase | no | no | 0.526 | 0.256 | 0.271 | 2e-12 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.484 | 0.113 | 0.305 | 2e-12 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.484 | 0.127 | 0.305 | 2e-12 | |
| Q3ULA2 | 605 | F-box/WD repeat-containin | no | no | 0.498 | 0.294 | 0.286 | 6e-12 | |
| Q922B6 | 594 | E3 ubiquitin-protein liga | no | no | 0.717 | 0.430 | 0.288 | 6e-12 |
| >sp|Q5SRY7|FBW1B_MOUSE F-box/WD repeat-containing protein 11 OS=Mus musculus GN=Fbxw11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 102/230 (44%), Gaps = 52/230 (22%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE-------RSV 213
D S KIW+ S+ +CL+ V H +V + D V+ TGS+D +RVW+ ++
Sbjct: 259 DNSIKIWDKSSLECLK-VLTGHTGSV-LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 214 VDHNKE----RKSRHMLVT----------------------TLVKHRSTVNALALNGDGS 247
+ HN+ R S ++VT LV HR+ VN + D
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDF--DDK 374
Query: 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307
+ S DR I VW F L GH + CL L+ SGS+D T+R+W
Sbjct: 375 YIVSASGDRTIKVWSTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD-- 429
Query: 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
C C+ LEGHE+ V+ + + I SG+ +G+IKVWD
Sbjct: 430 -IECGACLRVLEGHEELVRCIRFDNK---------RIVSGAYDGKIKVWD 469
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. Mediates also the ubiquitination of IFNAR1 and targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced ubiquitin-mediated decrease of RCAN1. Promotes the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint (By similarity). Involved in the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Mus musculus (taxid: 10090) |
| >sp|Q9UKB1|FBW1B_HUMAN F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 52/230 (22%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE-------RSV 213
D S KIW+ ++ +CL+ V H +V + D V+ TGS+D +RVW+ ++
Sbjct: 259 DNSIKIWDKTSLECLK-VLTGHTGSV-LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 214 VDHNKE----RKSRHMLVT----------------------TLVKHRSTVNALALNGDGS 247
+ HN+ R S ++VT LV HR+ VN + D
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDF--DDK 374
Query: 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307
+ S DR I VW F L GH + CL L+ SGS+D T+R+W
Sbjct: 375 YIVSASGDRTIKVWSTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI- 430
Query: 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
C C+ LEGHE+ V+ + + I SG+ +G+IKVWD
Sbjct: 431 --ECGACLRVLEGHEELVRCIRFDNK---------RIVSGAYDGKIKVWD 469
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(FBXW11) mediates the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. SCF(FBXW11) mediates the ubiquitination of IFNAR1. Targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced a ubiquitin-mediated decrease in RCAN1. Mediates the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Is target of human immunodeficiency virus type 1 (HIV-1) protein VPU to polyubiquitinate and deplete BST2 from cells and antagonize its antiviral action. Homo sapiens (taxid: 9606) |
| >sp|C4YFX2|TUP1_CANAW Transcriptional repressor TUP1 OS=Candida albicans (strain WO-1) GN=TUP1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213
+ S S DRS +IW+ +C S+ + ED V V VS +G ++ GS D +RVW+ +
Sbjct: 311 LVSGSGDRSVRIWDLRTSQC--SLTLSIEDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTT 368
Query: 214 ------VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW--ERER 265
+D E + H +V ++A + +G + SG DR + +W E +
Sbjct: 369 GFLVERLDSGNENGN---------GHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGKS 419
Query: 266 DHRMVFAEALWGHTGALL--CLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEK 323
D + GH +L C + + SGS DR V W + N + L+GH
Sbjct: 420 DKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNP---LLMLQGHRN 476
Query: 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
V S VA+S +S + GI + GSG I W
Sbjct: 477 SVIS-VAVSLNSKGTEGIFATGSGDCKARIWKW 508
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Represses transcription by RNA polymerase II. Represses genes responsible for initiating filamentous growth and this repression is lifted under inducing environmental conditions. Candida albicans (strain WO-1) (taxid: 294748) |
| >sp|P0CY34|TUP1_CANAL Transcriptional repressor TUP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TUP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213
+ S S DRS +IW+ +C S+ + ED V V VS +G ++ GS D +RVW+ +
Sbjct: 312 LVSGSGDRSVRIWDLRTSQC--SLTLSIEDGVTTVAVSPDGKLIAAGSLDRTVRVWDSTT 369
Query: 214 ------VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW--ERER 265
+D E + H +V ++A + +G + SG DR + +W E +
Sbjct: 370 GFLVERLDSGNENGN---------GHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGKS 420
Query: 266 DHRMVFAEALWGHTGALL--CLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEK 323
D + GH +L C + + SGS DR V W + N + L+GH
Sbjct: 421 DKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNP---LLMLQGHRN 477
Query: 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
V S VA+S +S + GI + GSG I W
Sbjct: 478 SVIS-VAVSLNSKGTEGIFATGSGDCKARIWKW 509
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Represses transcription by RNA polymerase II. Represses genes responsible for initiating filamentous growth and this repression is lifted under inducing environmental conditions. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 52/230 (22%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE-------RSV 213
D + KIW+ +Y C + H +V + DN V+ +GS+D +RVW+ +++
Sbjct: 241 DNTIKIWDRKDYSC-SRILSGHTGSV-LCLQYDNRVIISGSSDATVRVWDVETGECIKTL 298
Query: 214 VDHNKE----RKSRHMLVT----------------------TLVKHRSTVNALALNGDGS 247
+ H + R + ++VT LV HR+ VN + D
Sbjct: 299 IHHCEAVLHLRFANGIMVTCSKDRSIAVWDMVSPRDITIRRVLVGHRAAVNVVDF--DDR 356
Query: 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307
+ S DR I VW + + F L GH + CL G L+ SGS+D T+R+W
Sbjct: 357 YIVSASGDRTIKVWSMDT---LEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLWDIH 413
Query: 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
C R LEGHE+ V+ + I SG+ +G+IKVWD
Sbjct: 414 SGVCLR---VLEGHEELVRCIRFDEK---------RIVSGAYDGKIKVWD 451
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Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation. Caenorhabditis elegans (taxid: 6239) |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 141 HWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTG 200
H V + ++S S D S K+W+ +C+ ++ + H+ V+ V+++D +++G
Sbjct: 501 HEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTL-EGHDKPVHTVLLNDK-YLFSG 558
Query: 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260
S+D I+VW+ ++ TL H V L ++G LFSG D+ I V
Sbjct: 559 SSDKTIKVWDLKTLE----------CKYTLESHARAVKTLCISG--QYLFSGSNDKTIKV 606
Query: 261 WERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG 320
W+ + R + L GHT + + +G L SGS D+T+R+W C A L G
Sbjct: 607 WDL-KTFRCNYT--LKGHTKWVTTICILGTNLYSGSYDKTIRVWNL---KSLECSATLRG 660
Query: 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
H++ V+ +V + + S + IK+WD
Sbjct: 661 HDRWVEHMVICDK---------LLFTASDDNTIKIWD 688
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Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 27/200 (13%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE 219
D+ ++W+ S+ KCL ++ + H + VNAV S +G + +GS D +R+W+ S
Sbjct: 1137 DQIVRLWDISSKKCLYTL-QGHTNWVNAVAFSPDGATLASGSGDQTVRLWDIS------- 1188
Query: 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT 279
S+ + + L H S VN++ N DGS L SG D+ + +WE + GHT
Sbjct: 1189 -SSKCLYI--LQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC---TFQGHT 1242
Query: 280 GALLCLI--NVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337
+ ++ G +LASGS+D+TVR+W +C+ +GH V S VA + S
Sbjct: 1243 SWVNSVVFNPDGSMLASGSSDKTVRLWDISSS---KCLHTFQGHTNWVNS-VAFNPDGSM 1298
Query: 338 SNGIVSIGSGSLNGEIKVWD 357
+ SGS + +++W+
Sbjct: 1299 ------LASGSGDQTVRLWE 1312
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKE 219
D + KIW+A + C +++ + H D+V +V S +G V +GS DG I++W+
Sbjct: 1072 DHTIKIWDAVSGTCTQTL-EGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD--------- 1121
Query: 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT 279
+ TL H V+++A + DG + SG D I +W+ + L GH
Sbjct: 1122 -AASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG---TCTQTLEGHG 1177
Query: 280 GAL--LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337
G + + G +ASGS+D+T++IW C + LEGH V+S VA S
Sbjct: 1178 GWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQT---LEGHGGWVQS-VAFSPDGQ- 1232
Query: 338 SNGIVSIGSGSLNGEIKVWD 357
+ SGS + IK+WD
Sbjct: 1233 -----RVASGSSDNTIKIWD 1247
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 99/230 (43%), Gaps = 52/230 (22%)
Query: 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE-------RSV 213
D + KIW+ S +C + + H +V + D V+ TGS+D +RVW+ ++
Sbjct: 322 DNTIKIWDKSTLEC-KRILTGHTGSV-LCLQYDERVIITGSSDSTVRVWDVNAGEMLNTL 379
Query: 214 VDHNKE----RKSRHMLVT----------------------TLVKHRSTVNALALNGDGS 247
+ H + R + M+VT LV HR+ VN + D
Sbjct: 380 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK 437
Query: 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307
+ S DR I VW F L GH + CL L+ SGS+D T+R+W
Sbjct: 438 YIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI- 493
Query: 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
C C+ LEGHE+ V+ + + I SG+ +G+IKVWD
Sbjct: 494 --ECGACLRVLEGHEELVRCIRFDNK---------RIVSGAYDGKIKVWD 532
|
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3. Mus musculus (taxid: 10090) |
| >sp|Q922B6|TRAF7_MOUSE E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 39/295 (13%)
Query: 28 HHMIISCLAVHN--SLLYAASLNE-INVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84
H + CL V++ LL++ S ++ I V+D + Y T G V ++ K
Sbjct: 319 HQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEG---HDGIVLALCIQGCK 375
Query: 85 IFTAHQDCKIRVW------KITASRQH-QLVSTLPTVKDRLIRSVLPNNYV-----TVRR 132
+++ DC I VW K+ R H V TL + + L L V T +
Sbjct: 376 LYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELK 435
Query: 133 HKKRL-WLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191
KK L L HW V LV Q +YS S+ ++ KIW+ C+ V + +V ++ V
Sbjct: 436 LKKELTGLNHW--VRALVAAQSYLYSGSY-QTIKIWDIRTLDCIH-VLQTSGGSVYSIAV 491
Query: 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL--NGDGSLL 249
+++ +V G+ + I VW+ +KE+ V TL H TV ALA+ D + +
Sbjct: 492 TNHHIV-CGTYENLIHVWDI----ESKEQ------VRTLTGHVGTVYALAVISTPDQTKV 540
Query: 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIW 304
FS DR + VW + M+ + L H G++ L L SG+ D TV++W
Sbjct: 541 FSASYDRSLRVWSMDN---MICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW 592
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| 255540433 | 351 | F-box and wd40 domain protein, putative | 0.929 | 0.945 | 0.627 | 1e-121 | |
| 225456830 | 400 | PREDICTED: vegetative incompatibility pr | 0.921 | 0.822 | 0.623 | 1e-114 | |
| 296081392 | 480 | unnamed protein product [Vitis vinifera] | 0.955 | 0.710 | 0.590 | 1e-108 | |
| 225424584 | 432 | PREDICTED: myosin heavy chain kinase B-l | 0.952 | 0.787 | 0.592 | 1e-108 | |
| 255547986 | 438 | F-box and wd40 domain protein, putative | 0.935 | 0.762 | 0.581 | 1e-104 | |
| 224107729 | 433 | predicted protein [Populus trichocarpa] | 0.915 | 0.755 | 0.585 | 1e-101 | |
| 449527927 | 420 | PREDICTED: LOW QUALITY PROTEIN: cell div | 0.910 | 0.773 | 0.562 | 7e-99 | |
| 449435003 | 445 | PREDICTED: cell division control protein | 0.910 | 0.730 | 0.562 | 9e-99 | |
| 356565258 | 343 | PREDICTED: myosin heavy chain kinase B-l | 0.924 | 0.962 | 0.601 | 3e-97 | |
| 449440981 | 343 | PREDICTED: uncharacterized WD repeat-con | 0.915 | 0.953 | 0.553 | 7e-96 |
| >gi|255540433|ref|XP_002511281.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223550396|gb|EEF51883.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 227/362 (62%), Positives = 280/362 (77%), Gaps = 30/362 (8%)
Query: 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSN 67
S + KH CI +LK P+P I+CLAVHNSLLYAAS+NEINVFDL S+Y+H++TF+
Sbjct: 3 SLQQLKHKCITTLKTPTPQ-----INCLAVHNSLLYAASVNEINVFDL-SNYTHINTFTT 56
Query: 68 DLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT--ASRQHQLVSTLPTVKDRLIRSVLPN 125
+ +SGS+KSI FH TK+FTAHQDCKIRVW+++ +S++ LV TLPTVKDRL +LP
Sbjct: 57 NSPTSGSIKSIAFHNTKVFTAHQDCKIRVWQVSHSSSKELHLVHTLPTVKDRLCNFLLPQ 116
Query: 126 NYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA 185
NYV VRRHKKRLW+EHWD VS L + GLMYSVSWD+S KIW+ +N +CLESV AH+DA
Sbjct: 117 NYVNVRRHKKRLWIEHWDTVSGLAMHGGLMYSVSWDKSLKIWDVNNNRCLESV-LAHQDA 175
Query: 186 VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245
VN V +SD G VYTGSADG IRVW++ R+ +H LVTTL KH+STVNALALNGD
Sbjct: 176 VNTVAISDKGTVYTGSADGLIRVWKKV------GRQRKHSLVTTLEKHKSTVNALALNGD 229
Query: 246 GSLLFSGGCDRWIVVWERERD--------HRMVFAEALWGHTGALLCLINVGDLLASGSA 297
GS+LFSGGCDR I+VWER+ D ++MVF EAL GH GA+LCL+NVG L+ SGS+
Sbjct: 230 GSVLFSGGCDRSIMVWERKEDVDEHGNEHNQMVFVEALCGHAGAILCLMNVGYLIVSGSS 289
Query: 298 DRTVRIWQR-GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGI-VSIGSGSLNGEIKV 355
D+TVR+WQ+ GK+N Y CM LEGHE+PVKSLVA S +NG+ +SI SGSL+GEIKV
Sbjct: 290 DQTVRVWQQYGKKNGYCCMVVLEGHERPVKSLVAAS-----NNGLSLSICSGSLDGEIKV 344
Query: 356 WD 357
W+
Sbjct: 345 WE 346
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456830|ref|XP_002276016.1| PREDICTED: vegetative incompatibility protein HET-E-1 [Vitis vinifera] gi|297733658|emb|CBI14905.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/345 (62%), Positives = 264/345 (76%), Gaps = 16/345 (4%)
Query: 14 HHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSG 73
H C++SL+ +P ISCLAVH LYAAS +I+V+DL + ++H+DTF N+ +SG
Sbjct: 61 HLCVSSLRTLTPH-----ISCLAVHEKFLYAASGEDIHVYDLTT-HTHIDTFRNNKPTSG 114
Query: 74 SVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRH 133
SVKSI FH KIFTAHQD KIRVW+ITAS++H+L+STLPTVKD L RS+LP NYV VRRH
Sbjct: 115 SVKSIAFHEGKIFTAHQDSKIRVWRITASKRHRLISTLPTVKDFLRRSILPKNYVRVRRH 174
Query: 134 KKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193
KKRLW+EH DAVS L + +G MYS SWD+SFKIW S+ +C+ESV KAH+DAVNAV VS
Sbjct: 175 KKRLWIEHNDAVSGLAMAEGFMYSASWDKSFKIWRTSDLRCVESV-KAHDDAVNAVAVSA 233
Query: 194 NGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253
+G VYT SADG IRVWER+ +ER H L+TTL KH+STVNALAL+GDGS LFSGG
Sbjct: 234 SGTVYTASADGCIRVWERT----GEERT--HTLITTLEKHKSTVNALALSGDGSSLFSGG 287
Query: 254 CDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCY 312
C+ WI+VWERE + M +AL GHTG +LCLI V +++ SGS+DRTVRIW+ G + Y
Sbjct: 288 CESWILVWEREESANHMAATQALVGHTGPVLCLITVNNMIISGSSDRTVRIWRPGVDGRY 347
Query: 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
C LEGH KPVKSLVA+SS +S +VSI SGSL+GEIKVW+
Sbjct: 348 HCTLMLEGHVKPVKSLVAVSSGTSYD--VVSICSGSLDGEIKVWE 390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081392|emb|CBI16825.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/359 (59%), Positives = 262/359 (72%), Gaps = 18/359 (5%)
Query: 4 LHSVSSEAFK----HHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDY 59
L +S EA H C+A+LK P P H I+CLAV LYAAS +I+VFDL +Y
Sbjct: 121 LQKLSPEALNLSVSHLCVATLK---PRPVH--INCLAVSADSLYAASGYQIHVFDL-KNY 174
Query: 60 SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLI 119
+H+D F+ D SSSGSVKS+ F KIFT+HQ+ KIRVW++T S++HQLV+TLPTV DRL
Sbjct: 175 AHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQLVATLPTVNDRLR 234
Query: 120 RSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN 179
+LP NYV+VRRHKKRLW++H DAVS L V G + SVSWD+ FKIW AS+ +CLESV
Sbjct: 235 HFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKIWRASDLRCLESV- 293
Query: 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239
KAH+DAVNAV +S NG++YTGSAD RI+VW ++ + RH +V TL KH+S VNA
Sbjct: 294 KAHQDAVNAVAISGNGIIYTGSADCRIKVWAKA------SGEKRHTVVATLEKHKSAVNA 347
Query: 240 LALNGDGSLLFSGGCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSAD 298
LAL GDGS+LFSG CDR I+VWERE + MV AL GH+ A+LCLI+V DLL SGSAD
Sbjct: 348 LALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLLLSGSAD 407
Query: 299 RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
RTVRIWQ G + Y C++ LEGHEKPVK+LVA+S S G + + SGSL+GEIKVW
Sbjct: 408 RTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGEIKVWQ 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424584|ref|XP_002282147.1| PREDICTED: myosin heavy chain kinase B-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/358 (59%), Positives = 262/358 (73%), Gaps = 18/358 (5%)
Query: 4 LHSVSSEAFK----HHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDY 59
L +S EA H C+A+LK P P H I+CLAV LYAAS +I+VFDL +Y
Sbjct: 73 LQKLSPEALNLSVSHLCVATLK---PRPVH--INCLAVSADSLYAASGYQIHVFDL-KNY 126
Query: 60 SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLI 119
+H+D F+ D SSSGSVKS+ F KIFT+HQ+ KIRVW++T S++HQLV+TLPTV DRL
Sbjct: 127 AHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQLVATLPTVNDRLR 186
Query: 120 RSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN 179
+LP NYV+VRRHKKRLW++H DAVS L V G + SVSWD+ FKIW AS+ +CLESV
Sbjct: 187 HFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKIWRASDLRCLESV- 245
Query: 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239
KAH+DAVNAV +S NG++YTGSAD RI+VW ++ + RH +V TL KH+S VNA
Sbjct: 246 KAHQDAVNAVAISGNGIIYTGSADCRIKVWAKA------SGEKRHTVVATLEKHKSAVNA 299
Query: 240 LALNGDGSLLFSGGCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSAD 298
LAL GDGS+LFSG CDR I+VWERE + MV AL GH+ A+LCLI+V DLL SGSAD
Sbjct: 300 LALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLLLSGSAD 359
Query: 299 RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
RTVRIWQ G + Y C++ LEGHEKPVK+LVA+S S G + + SGSL+GEIKVW
Sbjct: 360 RTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGEIKVW 417
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547986|ref|XP_002515050.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223546101|gb|EEF47604.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 257/356 (72%), Gaps = 22/356 (6%)
Query: 11 AFKHHCIASLK-IPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDL 69
+ +H SLK IP ++ I+CLA+H++LLYAAS + +NV+D + + H+ +FS +
Sbjct: 78 SISYHSTTSLKLIP-----NLQITCLALHDNLLYAASTHIVNVYDRTTCH-HLHSFSANN 131
Query: 70 SSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129
SSSGS+KSITF KIFTAHQDCKIRVWK+ + QH+L++ LPTVKDRL +S+LP NYV
Sbjct: 132 SSSGSIKSITFCNGKIFTAHQDCKIRVWKLIQNYQHKLLTVLPTVKDRLSKSMLPKNYVN 191
Query: 130 VRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189
VRRHKK LW++H DAV+ L V G +YSVSWD+ KIW AS+ +CLESV KAHEDA+NAV
Sbjct: 192 VRRHKKMLWIQHADAVTSLAVNNGFIYSVSWDKCLKIWRASDLRCLESV-KAHEDAINAV 250
Query: 190 VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249
VVS NG VYTGSAD +IRVW + + +H LV TL KH+S VNALALN DGS+L
Sbjct: 251 VVSVNGTVYTGSADCKIRVWAKPL------DGKKHTLVATLEKHKSAVNALALNDDGSVL 304
Query: 250 FSGGCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGK 308
FSG CDR I+VWERE + MV + AL GH A+L LINV DLL SGSADRTVRIWQRG
Sbjct: 305 FSGACDRSILVWEREDSANHMVVSGALRGHGKAILSLINVSDLLLSGSADRTVRIWQRGH 364
Query: 309 ENCYRCMAFLEGHEKPVKSLVAI-------SSSSSASNGIVSIGSGSLNGEIKVWD 357
+ Y C+A LEGH KPVKSL A+ ++ N +VS+ SGSL+GEIK W
Sbjct: 365 DGKYCCLAVLEGHNKPVKSLAAVWEENDGNGNNHDNRNSVVSVFSGSLDGEIKAWQ 420
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107729|ref|XP_002314580.1| predicted protein [Populus trichocarpa] gi|222863620|gb|EEF00751.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/345 (58%), Positives = 254/345 (73%), Gaps = 18/345 (5%)
Query: 16 CIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSV 75
CI SLK P +H+ I+CL V ++LLYAAS +EINV+D ++ S VD+F++ SS GSV
Sbjct: 87 CINSLK---PQQNHLPITCLVVQDNLLYAASSHEINVYDR-TNLSLVDSFNDKDSSLGSV 142
Query: 76 KSITFHITKIFTAHQDCKIRVWKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134
KS++F KIFTAHQDCKIR WKI+++ + H+LV+ LPT+ DRL R VLP NYV VRRHK
Sbjct: 143 KSVSFCDGKIFTAHQDCKIRAWKISSTTKHHKLVTVLPTLNDRLRRFVLPKNYVNVRRHK 202
Query: 135 KRLWLEHWDAVSDLVVK--QGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192
K LW++H DAV+ L V GL+YSVSWD+S KIW AS+ +CLES+ KAHEDAVNAV VS
Sbjct: 203 KLLWIKHADAVTGLAVNDNNGLIYSVSWDKSLKIWRASDLQCLESI-KAHEDAVNAVAVS 261
Query: 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252
+G+VYTGSAD RIRVW + + + RH+LV TL KH+S VNALAL DGS+LFSG
Sbjct: 262 VDGMVYTGSADCRIRVWGKPL------NEKRHVLVATLEKHKSAVNALALKDDGSVLFSG 315
Query: 253 GCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENC 311
CDR I+VWERE + MV AL GH A+L LINV DLL SGSADRTVRIW+ G +
Sbjct: 316 ACDRSILVWEREDSANHMVVTGALRGHNKAILSLINVSDLLLSGSADRTVRIWREGHDGK 375
Query: 312 YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
Y C++ L+GH KPVK+L A+ + N +VS+ SG+L+GEIK W
Sbjct: 376 YICLSVLDGHRKPVKTLAAVRDN---DNDVVSVFSGTLDGEIKKW 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527927|ref|XP_004170959.1| PREDICTED: LOW QUALITY PROTEIN: cell division control protein 4-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 194/345 (56%), Positives = 241/345 (69%), Gaps = 20/345 (5%)
Query: 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVK 76
+AS K+P IS LAVH LY A+ +EINV+D ++ +SH+ F+ SSSGSVK
Sbjct: 71 VASFKLP--------ISHLAVHGPYLYVATAHEINVYDRLT-FSHITGFNAPDSSSGSVK 121
Query: 77 SITFHITKIFTAHQDCKIRVWKI--TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134
I F +I T+HQD KIRVW + + Q +LV+TLPTV DRL R +LP NYV VRRHK
Sbjct: 122 GIAFLPRQILTSHQDGKIRVWNLLHKKNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHK 181
Query: 135 KRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194
K LW++H DAV+ L V G +YSVSWDRS KIW S+++C+ESV AHEDAVNAV VS
Sbjct: 182 KLLWIQHADAVTGLAVNNGSIYSVSWDRSLKIWRGSDHRCVESVKAAHEDAVNAVAVSAG 241
Query: 195 GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254
G VYTGSAD +IRVW + E + RH+LV TL KH+S VNALALN DGSLLFSG C
Sbjct: 242 GTVYTGSADRKIRVWAK------PEAEKRHVLVATLEKHKSAVNALALNEDGSLLFSGAC 295
Query: 255 DRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313
DR ++VWERE + M AL GH A+LCLI V DLL SGSADRTVR+W+RG + +
Sbjct: 296 DRSVLVWEREDSANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSFS 355
Query: 314 CMAFLEGHEKPVKSLVAISSSSSA--SNGIVSIGSGSLNGEIKVW 356
C+ LEGH+KPVKSLV +S + + G+VS+ SGSL+GE+K W
Sbjct: 356 CLTVLEGHKKPVKSLVIVSEAEGMMRNGGVVSVCSGSLDGELKAW 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435003|ref|XP_004135285.1| PREDICTED: cell division control protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 194/345 (56%), Positives = 241/345 (69%), Gaps = 20/345 (5%)
Query: 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVK 76
+AS K+P IS LAVH LY A+ +EINV+D ++ +SH+ F+ SSSGSVK
Sbjct: 96 VASFKLP--------ISHLAVHGPYLYVATAHEINVYDRLT-FSHITGFNAPDSSSGSVK 146
Query: 77 SITFHITKIFTAHQDCKIRVWKI--TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134
I F +I T+HQD KIRVW + + Q +LV+TLPTV DRL R +LP NYV VRRHK
Sbjct: 147 GIAFLPRQILTSHQDGKIRVWNLLHKKNNQFKLVNTLPTVNDRLRRFILPKNYVNVRRHK 206
Query: 135 KRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194
K LW++H DAV+ L V G +YSVSWDRS KIW S+++C+ESV AHEDAVNAV VS
Sbjct: 207 KLLWIQHADAVTGLAVNNGSIYSVSWDRSLKIWRGSDHRCVESVKAAHEDAVNAVAVSAG 266
Query: 195 GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254
G VYTGSAD +IRVW + E + RH+LV TL KH+S VNALALN DGSLLFSG C
Sbjct: 267 GTVYTGSADRKIRVWAK------PEAEKRHVLVATLEKHKSAVNALALNEDGSLLFSGAC 320
Query: 255 DRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313
DR ++VWERE + M AL GH A+LCLI V DLL SGSADRTVR+W+RG + +
Sbjct: 321 DRSVLVWEREDSANYMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRGGDGSFS 380
Query: 314 CMAFLEGHEKPVKSLVAISSSSSA--SNGIVSIGSGSLNGEIKVW 356
C+ LEGH+KPVKSLV +S + + G+VS+ SGSL+GE+K W
Sbjct: 381 CLTVLEGHKKPVKSLVIVSEAEGMMRNGGVVSVCSGSLDGELKAW 425
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565258|ref|XP_003550859.1| PREDICTED: myosin heavy chain kinase B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 210/349 (60%), Positives = 255/349 (73%), Gaps = 19/349 (5%)
Query: 13 KHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSS 72
K HCI +LK +P I+CLAVH +LLYAASLN INVF+L + YSH+D+F N SS
Sbjct: 9 KRHCITNLKTLTPH-----ITCLAVHRNLLYAASLNLINVFEL-THYSHIDSF-NQSPSS 61
Query: 73 GSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRR 132
G VKSITF +K+FTAHQD KIRVW IT S++H+L+S+LPTV DRL R ++P NYVTVRR
Sbjct: 62 GFVKSITFTNSKVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVTVRR 121
Query: 133 HKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192
HK RLW++H D VS L V + MYSVSWDRSFK+W+ +Y+CLESV KAHEDA+NAV V+
Sbjct: 122 HKTRLWIKHSDTVSGLAVNERFMYSVSWDRSFKVWDLLSYRCLESV-KAHEDAINAVAVN 180
Query: 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252
+G VYT SADG I+VW R + E K RH LV+ + + +STVNALAL G G+ LFSG
Sbjct: 181 GDGTVYTASADGSIKVWRR-----DGEAK-RHKLVSNIGRQKSTVNALALEGGGAGLFSG 234
Query: 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ--RGKEN 310
GCD I WE ++ +V E L GH GA+LCLI+V LLAS SAD TVRIWQ RG N
Sbjct: 235 GCDGEICRWECGKNG-IVEMETLRGHGGAILCLIHVAGLLASASADLTVRIWQRERGSTN 293
Query: 311 CYRCMAFLEGHEKPVKSLVAISSSSSA--SNGIVSIGSGSLNGEIKVWD 357
Y C A LEGHEKPVKSLVA S + SN IV++ SGSL+GEI+VW+
Sbjct: 294 GYFCRAVLEGHEKPVKSLVAFSDAEGERDSNAIVTLFSGSLDGEIRVWE 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440981|ref|XP_004138262.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus] gi|449501446|ref|XP_004161369.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 190/343 (55%), Positives = 240/343 (69%), Gaps = 16/343 (4%)
Query: 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVK 76
IA+L P+ +CLA HN LLY+ + N+I VFD+ + ++ +DT + ++SGSVK
Sbjct: 10 IATLTTPN------TATCLAAHNGLLYSGATNQITVFDITNHFTQIDTLCVNDAASGSVK 63
Query: 77 SITFHITKIFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134
SI F K+FTAHQDCKIRVWK+T S H+L++TLPTVKDRL R + P NYV VRRH+
Sbjct: 64 SIAFGPWKVFTAHQDCKIRVWKVTRSGPPCHRLLATLPTVKDRLYRFISPRNYVHVRRHR 123
Query: 135 KRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194
KRLW+EHWDAVS +VV G +YSVSWDRS K+W+AS++KCL SV KAHEDAVNAV V N
Sbjct: 124 KRLWIEHWDAVSGVVVNGGFVYSVSWDRSLKVWSASDHKCLLSV-KAHEDAVNAVAVGQN 182
Query: 195 GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254
GVVYTGSADG I VWE V K++K ++ LV TL H+STVNA+ LN G +FSG
Sbjct: 183 GVVYTGSADGVIGVWE---VREGKKKK-KYTLVRTLNNHKSTVNAIVLNEGGRAMFSGSS 238
Query: 255 DRWIVVWERERDHRMV-FAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313
DR I+VW++E + + F E LWGH GA+LCL DLL SGS DRT+RIW+ N YR
Sbjct: 239 DRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGDVTNGYR 298
Query: 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
C ++GH PVKSLV +S + + I S SL+GEI+VW
Sbjct: 299 CTTVVDGHRSPVKSLVLVSVEDGERS--LMICSASLDGEIRVW 339
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| TAIR|locus:2024031 | 418 | AT1G24530 "AT1G24530" [Arabido | 0.803 | 0.686 | 0.537 | 7.9e-78 | |
| TAIR|locus:2032452 | 415 | AT1G24130 "AT1G24130" [Arabido | 0.871 | 0.749 | 0.443 | 2.3e-64 | |
| TAIR|locus:2170061 | 388 | AT5G50120 "AT5G50120" [Arabido | 0.887 | 0.817 | 0.412 | 4.2e-63 | |
| TAIR|locus:2066276 | 465 | AT2G26490 "AT2G26490" [Arabido | 0.789 | 0.606 | 0.397 | 2.4e-51 | |
| TAIR|locus:2010157 | 471 | AT1G49450 "AT1G49450" [Arabido | 0.781 | 0.592 | 0.389 | 4.7e-48 | |
| TAIR|locus:2015423 | 351 | AT1G47610 "AT1G47610" [Arabido | 0.784 | 0.797 | 0.388 | 1.8e-46 | |
| TAIR|locus:2083710 | 415 | AT3G51930 "AT3G51930" [Arabido | 0.806 | 0.693 | 0.349 | 1.8e-46 | |
| TAIR|locus:2116194 | 495 | AT4G34380 "AT4G34380" [Arabido | 0.789 | 0.569 | 0.368 | 3e-46 | |
| TAIR|locus:2074825 | 469 | AT3G50390 "AT3G50390" [Arabido | 0.784 | 0.597 | 0.392 | 6.2e-46 | |
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.781 | 0.589 | 0.369 | 5.6e-45 |
| TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 159/296 (53%), Positives = 199/296 (67%)
Query: 32 ISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQD 91
++CLAV+ L+A S +E++++D +H+DTF+ SG+VKS+ F KIFTAHQD
Sbjct: 86 VTCLAVNGGYLFAVSGHEVSIYDR-DMCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQD 144
Query: 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151
KI VWK+TA ++ ++TLPT+ DRL R LP NYV VRRHKKRLW+EH DAV+ L V
Sbjct: 145 GKIGVWKLTAKSGYKQLTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVS 204
Query: 152 QGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWER 211
G +YSVSWD++ KIW AS+ +C ES+ KAH+ YTGSAD RIRVW +
Sbjct: 205 DGFIYSVSWDKTLKIWRASDLRCKESI-KAHDDAVNAIAVSTNGTVYTGSADRRIRVWAK 263
Query: 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHRMV 270
+ RH LV TL KH+S VNALALN DGS+LFSG CDR I+VWERE + M
Sbjct: 264 PTGE------KRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMA 317
Query: 271 FAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
AL GH A+L L NV DLL SGSADRTVRIW+RG ++ Y C+ L GH KPVK
Sbjct: 318 VRGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVK 373
|
|
| TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 153/345 (44%), Positives = 203/345 (58%)
Query: 1 MSHLHSVSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFD----L 55
+S H SS HHC+A+LK S +S LAV + LLY S N EI V+
Sbjct: 48 LSFQHQSSS--VDHHCLATLKDKSS-----YVSSLAVSDKLLYTGSSNSEIRVWPREPPF 100
Query: 56 ISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT-----ASRQHQLVST 110
+YS D + + +G VKS+ K+ +AHQD KIRVWKI ++++ V+T
Sbjct: 101 SPEYSTGDDRNVVANGNGGVKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVAT 160
Query: 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWN 168
LPT+ DR +YV VRRHKK W+ H DAVS L + Q L+YS SWDRSFKIW
Sbjct: 161 LPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWR 220
Query: 169 ASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228
S++KCL+S+ KAH+ YTGSAD +I+VW NK+ K +H LV
Sbjct: 221 TSDFKCLDSIEKAHDDAINAIVVSKDGFVYTGSADKKIKVW-------NKKDK-KHSLVA 272
Query: 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER-----ERDHRMVFAEALWGHTGALL 283
TL KH S VNALA++ DG +L+SG CDR I+VWER + + M AL GH A++
Sbjct: 273 TLTKHLSAVNALAISEDGKVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIM 332
Query: 284 CLINVGDLLASGSADRTVRIWQRG--KENCYRCMAFLEGHEKPVK 326
CL DL+ SGSAD+++R+W+RG ++ Y C+A LEGH KPVK
Sbjct: 333 CLAVASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVK 377
|
|
| TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 140/339 (41%), Positives = 200/339 (58%)
Query: 5 HSVSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEI------NVFDLISD 58
H SS H CIA+L + IS L + LY S + + N + +++
Sbjct: 18 HLTSSSQPLHQCIATLVCHTAS----YISSLTLAGKRLYTGSNDGVVRLWNANTLETLAE 73
Query: 59 YS-HVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT-------ASRQHQLVST 110
S + D + + G+VKS+ K+FTAHQD KIRVWKI +++ ++T
Sbjct: 74 ASSNGDVITGERGGGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLAT 133
Query: 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-KQG-LMYSVSWDRSFKIWN 168
+PT+ DR + ++P N V +RRHKK W+ H DAVS L + + G L+YSVSWDR+ KIW
Sbjct: 134 MPTISDRFAKCLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWR 193
Query: 169 ASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228
+++KCLES AH+ YTGS+D RI+VW +++ + N ++K +H LV
Sbjct: 194 TTDFKCLESFTNAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVA 253
Query: 229 TLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN 287
L +H S +NALAL+G +GSLL SGG D I+VWER+ +V L GHT ++LCL
Sbjct: 254 ILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAV 313
Query: 288 VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
V D+L SGSAD+TVR+W+ ++ Y C+A LEGH PVK
Sbjct: 314 VSDILCSGSADKTVRLWKCSAKD-YSCLAMLEGHLGPVK 351
|
|
| TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 119/299 (39%), Positives = 175/299 (58%)
Query: 32 ISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQD 91
I LA LLY S ++ N I + ++ FS +SG VK+I KIFT HQD
Sbjct: 99 IYSLAATKDLLYTGSDSK-N----IRVWKNLKEFSAFKCNSGLVKAIVISGEKIFTGHQD 153
Query: 92 CKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149
KIRVWK++ Q H+ TLPT+KD S+ P NYV V++H+ LW++H DAVS L
Sbjct: 154 GKIRVWKVSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLS 213
Query: 150 V--KQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIR 207
+ +QGL+YS SWDR+ K+W ++ KCLES+ AH+ ++GSADG ++
Sbjct: 214 LNDEQGLLYSASWDRTIKVWRIADSKCLESI-PAHDDAVNSVVSTTEAIVFSGSADGTVK 272
Query: 208 VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267
W+R + + ++H L+ TL K S V ALA++ +G+ ++ G D + WERE+
Sbjct: 273 AWKRD----QQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVNFWEREK-- 326
Query: 268 RMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
++ + L GH A+LCL G L+ SGSAD+T+ +W+R N + C++ L GH PVK
Sbjct: 327 QLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRDG-NIHTCLSVLTGHTGPVK 384
|
|
| TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 116/298 (38%), Positives = 171/298 (57%)
Query: 35 LAVHNSLLYAASLNE-INVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQDC 92
LA LL+ S ++ I V+ + D FS S+SG VK+I ++FT HQD
Sbjct: 140 LAASGDLLFTGSDSKNIRVWKDLKD------FSGFKSTSGFVKAIVVTRDNRVFTGHQDG 193
Query: 93 KIRVWKITASR--QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150
KIRVW+ + ++ V +LPT+K+ L +SV P NYV VRR K L + H+DAVS L +
Sbjct: 194 KIRVWRGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSL 253
Query: 151 KQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRV 208
+ GL+YS SWD++ K+W S+ KCLES+ +AH+ +TGSADG ++V
Sbjct: 254 NEDLGLLYSGSWDKTLKVWRLSDSKCLESI-EAHDDAVNTVVSGFDDLVFTGSADGTLKV 312
Query: 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268
W+R V KE K H+LV L+K + V ALA+N ++++ G D + WER++
Sbjct: 313 WKREV--QGKEMK--HVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQK--Y 366
Query: 269 MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
+ + GH A+LCL G LL SG AD+ + +W+R + + C++ L HE PVK
Sbjct: 367 LTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVK 424
|
|
| TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 117/301 (38%), Positives = 166/301 (55%)
Query: 32 ISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQ 90
I LA N LLY S N + I + +++ FS S+SG VK+I K+FT HQ
Sbjct: 27 IYSLAATNDLLYTGSDN-----NYIRVWKNLNEFSGFKSNSGLVKAIVISREAKVFTGHQ 81
Query: 91 DCKIRVWKITAS--RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-- 146
D KIRVWK ++ R + +LP +KD L SV P+NYV VRR + LW++H DAVS
Sbjct: 82 DGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIKHSDAVSCL 141
Query: 147 DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRI 206
L QGL+YS SWDR+ K+W + KC+ES+ KAH+ +TGSADG +
Sbjct: 142 SLAEDQGLLYSASWDRTVKVWRIHDLKCIESI-KAHDDAVNSVTTAESLV-FTGSADGTV 199
Query: 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266
+VW+R + + +++ H L TL+K S V AL + ++SG D + WE
Sbjct: 200 KVWKREI----RGKRTAHSLFQTLLKQESAVTALVTSH--MAVYSGSSDGAVNFWEMGDK 253
Query: 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR-GKENCYRCMAFLEGHEKPV 325
+ E H A+LC+ G LL SG+AD+ + +W+R GK + C++ L GH PV
Sbjct: 254 KLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRREGK--VHTCVSVLTGHTGPV 311
Query: 326 K 326
K
Sbjct: 312 K 312
|
|
| TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 108/309 (34%), Positives = 178/309 (57%)
Query: 32 ISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQD 91
+S LA+ L +AS + ++ ++ + F+ GSVK++ +K+FTAHQD
Sbjct: 64 VSSLALCGEFLLSASQGK-DI--IVWQQPDLKIFAKFGQGDGSVKALVSVGSKVFTAHQD 120
Query: 92 CKIRVWKIT---ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148
+IRVWK++ + +LV TLPT KD L + + +NYV RR+ KRLW+EH D++S L
Sbjct: 121 SRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISCL 180
Query: 149 VVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRV 208
V G++YS SWD++ K+W S+ KCLES+ KAH+ Y+ SADG++++
Sbjct: 181 AVHAGIIYSGSWDKTLKVWRLSDLKCLESI-KAHDDAINGLVAGDGRV-YSASADGKVKI 238
Query: 209 W---ERSVVDHNKERKSR-HMLVTTLV-KHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263
W +R ++ S H+L TL + +VN++ ++GDG+ ++ GG D +++ WE+
Sbjct: 239 WGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGWEK 298
Query: 264 ER------DHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAF 317
+ + R+ F GH A+LC+ VG+++ SGSAD+++ +W+R
Sbjct: 299 KEKEGDFEEWRLGFETR--GHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGV 356
Query: 318 LEGHEKPVK 326
+ GHE PVK
Sbjct: 357 IHGHEGPVK 365
|
|
| TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 111/301 (36%), Positives = 172/301 (57%)
Query: 32 ISCLAVHNSLLYAASLNE-INVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ 90
I LA LLY S ++ I V+ + +++ F SSSG +K+I +IFT HQ
Sbjct: 128 IYSLAASGDLLYTGSDSKNIRVWKNLKEHAG---FK---SSSGLIKAIVIFGDRIFTGHQ 181
Query: 91 DCKIRVWKITASR--QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148
D KIR+WK++ + +H+ V TLPT K + SV P +++ VRR++ + +H DAVS L
Sbjct: 182 DGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHNDAVSSL 241
Query: 149 V--VKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRI 206
V+ GL+YS SWD + K+W ++ KCLES++ AH+ +TGSADG +
Sbjct: 242 SLDVELGLLYSSSWDTTIKVWRIADSKCLESIH-AHDDAINSVMSGFDDLVFTGSADGTV 300
Query: 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266
+VW+R + + + ++H L L+K + V ALA+ S+++ G D + WER +
Sbjct: 301 KVWKREL----QGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWERSK- 355
Query: 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG-KENCYRCMAFLEGHEKPV 325
R L GH A+LCL G+LL SGSAD+ + +W+R + ++C++ L GH PV
Sbjct: 356 -RSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPV 414
Query: 326 K 326
K
Sbjct: 415 K 415
|
|
| TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 120/306 (39%), Positives = 172/306 (56%)
Query: 32 ISCLAVHNSLLYAASLNE-INVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ 90
I LA LLY S ++ I V+ +HV+ FS+ S+SG VK+I KIFT HQ
Sbjct: 101 IYSLATSGDLLYTGSDSKNIRVWK-----NHVE-FSSFKSNSGLVKAIVLAGDKIFTGHQ 154
Query: 91 DCKIRVWKITA--SRQHQLVSTLPTVKDRLIRSVLPNNYVT-VRRHKKR--LWLEHWDAV 145
D KIRVWK + S H+ V T+P + D + S++P++Y RR++ L H DA+
Sbjct: 155 DGKIRVWKAASKESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAI 214
Query: 146 SDLVVKQG--LMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSAD 203
S L + + L+YS SWD++FK+W S+ +C+ESVN AHE +TGSAD
Sbjct: 215 SCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVN-AHEDAVNAVVSGFDGLVFTGSAD 273
Query: 204 GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263
G ++VW R D K+ K H TL+K V A+A++ +L++ G D + WER
Sbjct: 274 GTVKVWRRE--DQAKDTK--HFFSETLLKQDCAVTAIAVDQSATLVYCGSSDGTVNFWER 329
Query: 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR---GKENCYRCMAFLEG 320
E + M L GH A+LCL+ G+L+ SGSAD +R+W+R G E+ C++ L G
Sbjct: 330 ENN--MKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHV--CLSVLTG 385
Query: 321 HEKPVK 326
H PVK
Sbjct: 386 HAGPVK 391
|
|
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 110/298 (36%), Positives = 170/298 (57%)
Query: 35 LAVHNSLLYAASLNE-INVFDLISDYSHVDTFSNDLSSSGSVKSITFH-ITKIFTAHQDC 92
LA LL+ S ++ I V+ + D++ F S+SG VK+I +IFT HQD
Sbjct: 144 LAASGDLLFTGSDSKNIRVWKDLKDHTG---FK---STSGLVKAIVITGDNRIFTGHQDG 197
Query: 93 KIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150
KIRVW+ + R + + +LPT+K+ L +SV P NYV VRR K L + H+DAVS L +
Sbjct: 198 KIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSL 257
Query: 151 KQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEXXXXXXXXXXXXXXYTGSADGRIRV 208
+ GL+YS SWD++ K+W S+ KCLES+ +AH+ +TGSADG ++V
Sbjct: 258 NEELGLLYSGSWDKTLKVWRLSDSKCLESI-QAHDDAINTVAAGFDDLLFTGSADGTLKV 316
Query: 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268
W+R + + + ++H LV L+K + V ALA+N ++++ G D + WE ++
Sbjct: 317 WKREL----QGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSDGTVNFWEGQK--Y 370
Query: 269 MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326
+ L GH A+LCL G L+ SG AD+ + +W+R + + C++ L H PVK
Sbjct: 371 LSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVK 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 357 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-28 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 4e-28
Identities = 83/309 (26%), Positives = 121/309 (39%), Gaps = 47/309 (15%)
Query: 70 SSSGSVKSITFH--ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127
+G V + F + T D I+VW + + T R + + Y
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVAASADGTY 65
Query: 128 V-------TVR------RHKKRLWLEHWDAVS--DLVVKQGLMYSVSWDRSFKIWNASNY 172
+ T+R R H VS ++ S S D++ K+W+
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125
Query: 173 KCLESVNKAHEDAVNAVVVS-DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV 231
KCL ++ + H D VN+V S D V + S DG I++W D + V TL
Sbjct: 126 KCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-----DLRTGK-----CVATLT 174
Query: 232 KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA-LWGHTGALLCL--INV 288
H VN++A + DG L S D I +W D L GH + +
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLW----DLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348
G LLASGS D T+R+W C + L GH V S +A S + SGS
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQT---LSGHTNSVTS-LAWSPDGKR------LASGS 280
Query: 349 LNGEIKVWD 357
+G I++WD
Sbjct: 281 ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 48/134 (35%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL 285
L TL H V +A + DG LL +G D I VW+ E + L GHTG + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDV 57
Query: 286 --INVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343
G LASGS+D+T+R+W C R L GH V S+ + S I+S
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSV-----AFSPDGRILS 109
Query: 344 IGSGSLNGEIKVWD 357
S S + IKVWD
Sbjct: 110 --SSSRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.6 bits (179), Expect = 2e-14
Identities = 76/383 (19%), Positives = 150/383 (39%), Gaps = 49/383 (12%)
Query: 2 SHLHSVSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNS---LLYAASLNEINVFDLISD 58
S + ++ + + L H I+ +A LL +S I ++DL +
Sbjct: 38 SGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNG 97
Query: 59 YSHVDTFSNDLSS---SGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115
+ + S ++ S + + ++ D +++W ++ + +
Sbjct: 98 EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES 157
Query: 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK------------------QGLMYS 157
+ + P+ + ++ WD + + L+ S
Sbjct: 158 VTSL-AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHN 217
S D + ++W+ S K L S H D+V + D ++ +GS+DG IR+W
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW-------- 268
Query: 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWG 277
+ +S L+ TL H S+V ++A + DG LL SG D + +W+ +++ + L G
Sbjct: 269 -DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD-LETGKLLSSLTLKG 326
Query: 278 HTGALLCLI---NVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334
H G + L + L++ GS D T+R+W + + V S+
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL----EGHSNVLSV------ 376
Query: 335 SSASNGIVSIGSGSLNGEIKVWD 357
S S + SGS +G +++WD
Sbjct: 377 -SFSPDGRVVSSGSTDGTVRLWD 398
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (171), Expect = 2e-13
Identities = 77/364 (21%), Positives = 136/364 (37%), Gaps = 39/364 (10%)
Query: 13 KHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASL--NEINVFDLISDYSHVDTFSNDLS 70
I SL+ + NS+L A+S + ++DL + + T
Sbjct: 97 GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156
Query: 71 SSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVST----------LPTVKDRLI- 119
S S+ + D I++W + + ++ P +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 120 ----RSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCL 175
++ + T + + L VS L+ S S D + ++W+ + L
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 176 ESVNKAHEDAVNAVVVS-DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234
H +V +V S D ++ +GS+DG +R+W + + TL H
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--------DLETGKLLSSLTLKGHE 328
Query: 235 STVNALALNGDGSLLFSGGCDRWIV-VWERERDHRMVFAEALWGHTGALLCLINVGDLLA 293
V++L+ + DGSLL SGG D + +W+ + E + G +++
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG--HSNVLSVSFSPDGRVVS 386
Query: 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353
SGS D TVR+W + + L+GH V SL S S+ SGS + I
Sbjct: 387 SGSTDGTVRLW---DLSTGSLLRNLDGHTSRVTSL-------DFSPDGKSLASGSSDNTI 436
Query: 354 KVWD 357
++WD
Sbjct: 437 RLWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.3 bits (103), Expect = 6e-05
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 44/239 (18%)
Query: 30 MIISCLAVHNSLLYAASL-NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFH--ITKIF 86
++S + SLL + S I ++DL S S + T S S SV S+ F +
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS---GHSSSVLSVAFSPDGKLLA 300
Query: 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146
+ D +R+W + + + +T++ H+ + +
Sbjct: 301 SGSSDGTVRLWDL--------------------ETGKLLSSLTLKGHEGPVSSLSFSPDG 340
Query: 147 DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGR 205
L+V S D + ++W+ K L+++ V +V S +G VV +GS DG
Sbjct: 341 SLLV-----SGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264
+R+W+ S L+ L H S V +L + DG L SG D I +W+ +
Sbjct: 394 VRLWDLSTGS----------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262
L+ TL H V ++A + DG L SG D I +W+
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
L+ TL H V ++A + DG+LL SG D + VW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.3 bits (79), Expect = 0.004
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209
K H V +V S +G ++ +GS DG +RVW
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.98 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.97 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.96 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.94 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.92 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.92 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.92 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.89 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.88 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.86 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.84 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.81 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.75 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.72 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.7 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.67 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.66 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.49 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.45 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.44 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.43 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.42 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.41 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.4 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.39 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.37 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.36 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.32 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.32 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.29 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.29 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.26 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.24 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.19 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.18 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.18 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.16 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.14 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.08 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.07 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.03 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.03 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.02 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.01 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.0 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.99 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.97 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.97 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.96 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.95 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.95 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.95 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.93 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.92 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.87 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.84 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.8 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.75 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.71 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.64 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.61 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.54 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.52 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.47 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.44 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.42 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.38 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.32 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.32 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.32 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.3 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.3 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.28 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.27 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.26 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.24 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.22 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.15 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.08 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.06 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.94 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.89 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.88 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.8 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.78 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.75 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.74 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.72 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.72 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.66 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.66 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.59 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.48 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.41 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.41 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.25 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.24 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.18 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.14 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.1 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.1 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.1 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.02 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.92 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.91 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.9 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.89 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.88 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.73 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.7 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.62 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.61 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.52 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.46 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.45 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.35 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.32 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.26 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.16 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.16 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.1 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.1 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.05 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.78 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.52 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.44 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.39 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.38 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.24 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.19 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.17 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.08 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.08 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 95.06 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.91 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.81 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.73 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.56 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.29 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.27 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.21 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.12 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.95 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.58 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.55 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.44 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.25 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.14 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.86 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.79 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.75 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.62 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.6 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.1 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.08 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.0 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 91.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.26 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 91.16 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 91.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.63 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.31 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.25 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 90.08 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.95 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.56 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.34 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.7 | |
| PLN02153 | 341 | epithiospecifier protein | 88.28 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.03 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.86 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 87.67 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.51 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.17 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.47 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.4 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 86.2 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 85.98 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.72 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.72 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 85.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.6 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 85.57 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.55 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 83.51 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.43 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 83.43 | |
| PLN02193 | 470 | nitrile-specifier protein | 83.34 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.11 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 82.67 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 82.58 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 82.49 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 82.23 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 82.06 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.71 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 80.88 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 80.65 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=346.89 Aligned_cols=294 Identities=22% Similarity=0.374 Sum_probs=263.0
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
+..+|...+.+ |.++|.|++|+ |..||+|+.| ++|+||+ .+..+..+.++ |...|.|++|+||+ |+
T Consensus 103 pvtrCssS~~G-----H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-~TeTp~~t~Kg---H~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 103 PVTRCSSSIAG-----HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-DTETPLFTCKG---HKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred ccceeccccCC-----CCCcEEEEEecCCCceEEecCCCceEEeecc-CCCCcceeecC---CccEEEEEEECCCcchhh
Confidence 56678888886 99999999999 9999999999 9999999 99999999999 99999999999998 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-------CeEEEEe
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-------GLMYSVS 159 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~ 159 (357)
+|+.||+|++||..++++.. .. +.+|...|++++|.| .+|++++
T Consensus 174 SG~~dg~I~lwdpktg~~~g--~~---------------------------l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIG--RA---------------------------LRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred ccccCCeEEEecCCCCCccc--cc---------------------------ccCcccceeEEeecccccCCCccceeccc
Confidence 99999999999999887543 22 239999999999998 7899999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc---------------------
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK--------------------- 218 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------- 218 (357)
.||.++|||+..++++..+ .+|..+|+|++|--+|++++|+.|++|++|+...+....
T Consensus 225 kDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 9999999999999999999 899999999999999999999999999999976421100
Q ss_pred ------cc------------------------------------------ccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 219 ------ER------------------------------------------KSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 219 ------~~------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+ ....+++..+.+|+.-|+.+.|+||+++++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 00 012234456678999999999999999999
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
+++.|+.|++||.++++ .+..+.+|-.+|..++|+.+ +|++|+.|.++++|++++. +....+.+|.+.|.++
T Consensus 384 SaSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPGHADEVFAV 457 (480)
T ss_pred EeecccceeeeeCCCcc---hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCCCCceEEEE
Confidence 99999999999999998 66788899999999999988 9999999999999999986 7778899999999999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|+||+. .+++|+.|..+++|-
T Consensus 458 DwspDG~-------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQ-------RVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCc-------eeecCCCceEEEeec
Confidence 9999999 999999999999993
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=317.46 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=252.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC--c--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--K--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~--l~~~~~d~~i~vwd~~ 100 (357)
-+.+|..+.|+ ++.||||+.+ .++||+. .+...+++|.+ |...|.++.|+|. . ++||+.||++++|+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~-~~~~~~~~l~g---H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSV-PQCNLLQTLRG---HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeec-CCcceeEEEec---cccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 67899999999 9999999999 9999999 88899999999 9999999999997 2 9999999999999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+...+..+. +|...|..++|+| ++|+|++.|.+-++||++++..+...
T Consensus 250 ~e~~l~~l~------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 250 QETPLQDLE------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred CCcchhhhh------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence 875544433 9999999999999 99999999999999999999888777
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.+|...|.+++|.+|| .+++|+.|..-+|||++ ....+..+.+|..+|.+++|+|+|..|++|+.|++
T Consensus 300 -EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR----------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 300 -EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR----------TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred -cccccccceeEecCCCceeeccCccchhheeecc----------cCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 8999999999999999 68899999999999999 67788899999999999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
++|||++.... ...+.+|.+-|..+.|+|. +|+|++.|+++++|..++. .++..+.||.+.|.+++.++++
T Consensus 369 ~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 369 CKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred EEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999997764 6677889999999999874 9999999999999999986 8899999999999999999999
Q ss_pred CCCCCCeEEEEEcCCCCeEEecC
Q 038568 335 SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. +++|++.|.++++|.
T Consensus 443 ~-------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 Q-------AIATSSFDRTIKLWR 458 (459)
T ss_pred c-------eEEEeccCceeeecc
Confidence 9 999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=275.77 Aligned_cols=288 Identities=18% Similarity=0.262 Sum_probs=252.2
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
+..++|++ |.+.|.++.|+ .++|++++.| .+.|||. -+....+.++. ....|..++|+|.+ +++|+
T Consensus 46 ~~rr~LkG-----H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs-~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 46 RTRRTLKG-----HLNKIYAMDWSTDSRRIVSASQDGKLIVWDS-FTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred eeEEEecc-----cccceeeeEecCCcCeEEeeccCCeEEEEEc-ccccceeEEec---CceeEEEEEECCCCCeEEecC
Confidence 34466775 99999999999 8999999999 9999999 77778888887 88899999999987 89999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd 168 (357)
.|+...||++.+.+........ +.+.+|.+.+.|+.|.+ ..|++++.|.+..+||
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~------------------------r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVS------------------------RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred cCceeEEEecccccccccceee------------------------eeecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 9999999999865321111110 23349999999999999 9999999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
+++++.+..| .+|...|.++.++| ++ .+++|+.|+..++||+| .....+.+.+|.+.|+++.|.|+|
T Consensus 173 ie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R----------~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 173 IETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR----------SGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred cccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc----------CcceeEeecccccccceEEEccCC
Confidence 9999999999 89999999999999 55 59999999999999999 567889999999999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
.-+++|+.|++.++||++..+++.... ...-..+|++++|+ +++|++|..|..+.+||.-.+ +.+..+.+|...
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNR 317 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENR 317 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCe
Confidence 999999999999999999988764443 33345567888775 569999999999999999987 667888899999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++..+||+. .++|||.|..+|||.
T Consensus 318 vScl~~s~DG~-------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGM-------AVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCc-------EEEecchhHheeecC
Confidence 99999999998 999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=263.01 Aligned_cols=283 Identities=21% Similarity=0.339 Sum_probs=234.0
Q ss_pred eecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEecc----CCccccceeccccCCCCceEEEEEecCc--
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLI----SDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~----~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
....++++ |++.|+.++.. .+.+++++.| .+.+|++. +.+.+++.+.+ |...|..++.++++
T Consensus 6 ~l~~tl~g-----h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G---HsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 6 VLRGTLEG-----HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG---HSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeeeecC-----CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec---cceEecceEEccCCce
Confidence 34445665 99999999998 6899999999 99999983 22566888888 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
.++++.|+++++||+.+++..+.+. +|...|.+++|++ ..+++|+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~------------------------------GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFV------------------------------GHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEE------------------------------ecCCceEEEEecCCCceeecCCCcc
Confidence 8999999999999999986554443 9999999999999 8999999999
Q ss_pred eEEEEEcCcchhhhhcccc-ccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 163 SFKIWNASNYKCLESVNKA-HEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
+|++||+.. .+..++... +.+.|.|++|+|+. .|++++.|++|++||++ ..+....+.+|.+.++
T Consensus 128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~----------~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR----------NCQLRTTFIGHSGYVN 196 (315)
T ss_pred eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC----------CcchhhccccccccEE
Confidence 999999864 444444233 37899999999985 59999999999999998 6677788899999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.++++|||.++++|+.||.+.+||++.++.+. . .+|...|.+++|+|+ +.++...+..|+|||++++.....+..
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---s-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---S-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeE---e-ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence 99999999999999999999999999988633 2 357889999999999 555556666799999998742222111
Q ss_pred ------ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 ------LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ------~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+...-...+++|++++. .|++|-.|+.|++|.
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~-------tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQ-------TLFAGYTDNVIRVWQ 311 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCc-------EEEeeecCCcEEEEE
Confidence 111122356889999998 999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=273.83 Aligned_cols=285 Identities=20% Similarity=0.340 Sum_probs=254.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++++.+.+++ |.+.|.|+++. +.+|++|+.| +|+|||+ .++++..++.+ |...|..+++++.. ++
T Consensus 139 apwKl~rVi~g-----HlgWVr~vavdP~n~wf~tgs~DrtikIwDl-atg~LkltltG---hi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 139 APWKLYRVISG-----HLGWVRSVAVDPGNEWFATGSADRTIKIWDL-ATGQLKLTLTG---HIETVRGVAVSKRHPYLF 209 (460)
T ss_pred Ccceehhhhhh-----ccceEEEEeeCCCceeEEecCCCceeEEEEc-ccCeEEEeecc---hhheeeeeeecccCceEE
Confidence 36788888887 99999999999 8899999999 9999999 99999999998 99999999999875 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|+.|+.||++..+.++... +|-+.|.+++.+| +.|++|+.|.++
T Consensus 210 s~gedk~VKCwDLe~nkvIR~Yh------------------------------GHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYH------------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhc------------------------------cccceeEEEeccccceeEEecCCcceE
Confidence 99999999999999887665443 9999999999999 999999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
++||+++...+..+ .+|..+|..+.+.|-+ ++++|+.|++|++||++ .++....+..|...|.+++.+
T Consensus 260 RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~----------agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 260 RVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR----------AGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred EEeeecccceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec----------cCceeEeeecccceeeEEecC
Confidence 99999999999999 8999999999998854 89999999999999998 556677788899999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecC--
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEG-- 320 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-- 320 (357)
|....+++++.|. |+.|++..+. ....+.+|...+.+++.+.+ ++++|+++|.+..||.+++..++.......
T Consensus 329 P~e~~fASas~dn-ik~w~~p~g~---f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 329 PKENLFASASPDN-IKQWKLPEGE---FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred CchhhhhccCCcc-ceeccCCccc---hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCC
Confidence 9999999999887 9999999887 45568899999999998777 999999999999999999866655543322
Q ss_pred ---CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 321 ---HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 321 ---h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....|.+.+|...+. .|+||..|.+|++|.
T Consensus 405 Sl~sEagI~as~fDktg~-------rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGS-------RLITGEADKTIKMYK 437 (460)
T ss_pred ccccccceeEEeecccCc-------eEEeccCCcceEEEe
Confidence 235689999999998 999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=262.19 Aligned_cols=283 Identities=23% Similarity=0.311 Sum_probs=245.4
Q ss_pred ecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ 90 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~ 90 (357)
+...+..+.| |++.|..+.|+ |.+||+|+.| .|.+|+.....+....+.+ |.++|..+.|.+|+ +++++.
T Consensus 36 l~ap~m~l~g--h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 36 LQAPIMLLPG--HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred ccchhhhcCC--CcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecC
Confidence 3444555567 99999999999 9999999999 9999997566677778887 99999999999987 999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIW 167 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw 167 (357)
|.+++.||+++++.....+ +|..-|+++.... .++.+++.||++++|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHK------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred CceEEEEecccceeeehhc------------------------------cccceeeecCccccCCeEEEecCCCceEEEE
Confidence 9999999999998765544 8889999988555 789999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
|+++..+++++ ..+..++++.|..++ .+++|+-|+.|++||++ .......+.+|..+|+.+..+|+|
T Consensus 161 D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 161 DIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred eecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccc----------cCcceEEeecccCceeeEEeccCC
Confidence 99999999887 677889999999888 69999999999999998 667888999999999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCcee-eeeeccCCc----cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMV-FAEALWGHT----GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~----~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
.++.+-+.|.++++||++.-..-. .+..+.+|. ...+.++|+|+ .+.+|+.|..+++||.... ..+..+.
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklp 305 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLP 305 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcC
Confidence 999999999999999998543221 233444443 23466788877 8999999999999999875 7899999
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
||.+.|++++|+|..+ +|.+++.|.+|.+
T Consensus 306 Gh~gsvn~~~Fhp~e~-------iils~~sdk~i~l 334 (338)
T KOG0265|consen 306 GHYGSVNEVDFHPTEP-------IILSCSSDKTIYL 334 (338)
T ss_pred CcceeEEEeeecCCCc-------EEEEeccCceeEe
Confidence 9999999999999999 9999999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=253.31 Aligned_cols=266 Identities=23% Similarity=0.394 Sum_probs=228.2
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
.-+|++++.| +||+|.. .++....+++. ....|+.+...|++ |++++ ...|++||+++.... .+.+
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~-Pv~t----- 78 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQH---PDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPN-PVAT----- 78 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEec---CccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCC-ceeE-----
Confidence 4589999999 9999999 99999999996 67899999999998 55555 578999999987653 2222
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
+.+|...|+++.|.. +.+++|+.||+++|||++...+.+.+ .+..+|+++..+|
T Consensus 79 ----------------------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhp 134 (311)
T KOG0315|consen 79 ----------------------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHP 134 (311)
T ss_pred ----------------------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecC
Confidence 238999999999999 89999999999999999997777776 6779999999999
Q ss_pred CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC---ce
Q 038568 194 NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH---RM 269 (357)
Q Consensus 194 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~ 269 (357)
+. .|++|..+|.|++||+. ......++ ......+|.++...|||.+|+.+..-|..++|++-... ++
T Consensus 135 nQteLis~dqsg~irvWDl~------~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLG------ENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred CcceEEeecCCCcEEEEEcc------CCcccccc---CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence 87 69999999999999998 22111122 22334789999999999999999999999999986543 44
Q ss_pred eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 270 VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
.++..++.|.+-++.+.++|+ +||+++.|.+++||+.++- ++....+.+|...+.+.+|+.|+. +|+||
T Consensus 206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~-------YlvTa 276 (311)
T KOG0315|consen 206 EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE-------YLVTA 276 (311)
T ss_pred eEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc-------EEEec
Confidence 556678889999999988887 9999999999999999986 577778999999999999999999 99999
Q ss_pred CCCCeEEecC
Q 038568 348 SLNGEIKVWD 357 (357)
Q Consensus 348 ~~dg~v~~wd 357 (357)
+.|+.+|+||
T Consensus 277 ssd~~~rlW~ 286 (311)
T KOG0315|consen 277 SSDHTARLWD 286 (311)
T ss_pred CCCCceeecc
Confidence 9999999997
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=274.25 Aligned_cols=240 Identities=25% Similarity=0.398 Sum_probs=213.4
Q ss_pred cceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccc
Q 038568 62 VDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL 139 (357)
Q Consensus 62 ~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (357)
-..+.+ |.++|.|++|+|++ |++|+.|.++++||+.+.......+
T Consensus 108 ssS~~G---H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K------------------------------ 154 (480)
T KOG0271|consen 108 SSSIAG---HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK------------------------------ 154 (480)
T ss_pred ccccCC---CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec------------------------------
Confidence 345565 99999999999987 9999999999999999887654443
Q ss_pred cccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-----C-eEEEEeCCCeEEEEEc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-----G-VVYTGSADGRIRVWER 211 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~-~l~~~~~d~~i~i~d~ 211 (357)
+|...|.|++|+| +.||+|+.||.|++||.++++++..-..+|...|++++|.|- . +|++++.||.++|||+
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 9999999999999 999999999999999999998876655899999999999862 2 5999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec---
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--- 288 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--- 288 (357)
. ....+..+.+|..+|+|+.|-.+| +|++|+.|++|++|+...+. +.+.+.+|...|+.++.+
T Consensus 235 ~----------~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 235 K----------LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCRELKGHAHWVNHLALSTDY 300 (480)
T ss_pred c----------CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhhcccchheeeeeccchh
Confidence 7 567888999999999999997654 89999999999999999876 567888999999888765
Q ss_pred ----------C-------------------------ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 289 ----------G-------------------------DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 289 ----------~-------------------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+ +.|++|++|.++.+|+....+ +++..+.+|...|+.+.|+||
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd 378 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPD 378 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--cchhhhhchhhheeeEEECCC
Confidence 1 249999999999999987653 678899999999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++ ++|++|.|..|++||
T Consensus 379 ~r-------~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 379 GR-------YIASASFDKSVKLWD 395 (480)
T ss_pred cc-------EEEEeecccceeeee
Confidence 99 999999999999997
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=282.01 Aligned_cols=243 Identities=22% Similarity=0.375 Sum_probs=222.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+.+....+++|++ |.+.|.++.|+ +..+|||+.| ++++|++ ++..++..+.+ |...|..++|+|++
T Consensus 203 ~~~~~~~~~~l~g-----H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~l~~l~g---H~~RVs~VafHPsG 273 (459)
T KOG0272|consen 203 SVPQCNLLQTLRG-----HTSRVGAAVFHPVDSDLNLATASADGTVKLWKL-SQETPLQDLEG---HLARVSRVAFHPSG 273 (459)
T ss_pred ecCCcceeEEEec-----cccceeeEEEccCCCccceeeeccCCceeeecc-CCCcchhhhhc---chhhheeeeecCCC
Confidence 3455677888886 99999999999 3489999999 9999999 88899999998 99999999999998
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|+|++.|.+-++||++++...... ++|...|.+++|++ .++++|+.
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL~Q------------------------------EGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELLLQ------------------------------EGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred ceeeecccccchhhcccccchhhHhh------------------------------cccccccceeEecCCCceeeccCc
Confidence 999999999999999988754332 29999999999999 89999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|..-+|||+++++++..+ .+|..+|.++.|+|+|+ |++|+.|++++|||++ ....+..+.+|.+-|+.
T Consensus 324 D~~~RvWDlRtgr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR----------~r~~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR----------MRSELYTIPAHSNLVSQ 392 (459)
T ss_pred cchhheeecccCcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEeeec----------ccccceecccccchhhh
Confidence 999999999999999999 88999999999999996 9999999999999999 45568899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
+.|+| .|.+|++++.|+++++|..++.. +.+.+.||.+.|.++..+++ ++++++.|+++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 78899999999999999998877 67788999999999988877 899999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=270.92 Aligned_cols=279 Identities=24% Similarity=0.410 Sum_probs=244.7
Q ss_pred cccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEE
Q 038568 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIR 95 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~ 95 (357)
++.+..... ....|.|+.|....+++|..| +|+|||. ++.+....+.+ |.+.|.|+.|...-+++|+.|.+|+
T Consensus 187 ~~rinc~Se--~skgVYClQYDD~kiVSGlrDnTikiWD~-n~~~c~~~L~G---HtGSVLCLqyd~rviisGSSDsTvr 260 (499)
T KOG0281|consen 187 LQRINCRSE--NSKGVYCLQYDDEKIVSGLRDNTIKIWDK-NSLECLKILTG---HTGSVLCLQYDERVIVSGSSDSTVR 260 (499)
T ss_pred eeeecCCcc--cCCceEEEEecchhhhcccccCceEEecc-ccHHHHHhhhc---CCCcEEeeeccceEEEecCCCceEE
Confidence 344444333 567899999999999999999 9999999 99999999998 9999999999988899999999999
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchh-
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKC- 174 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 174 (357)
|||+++++.+..+ ..|...|..+.|+.+++++++.|.++.+||+.....
T Consensus 261 vWDv~tge~l~tl------------------------------ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 261 VWDVNTGEPLNTL------------------------------IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred EEeccCCchhhHH------------------------------hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH
Confidence 9999999866433 389999999999999999999999999999987542
Q ss_pred --hhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 175 --LESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 175 --~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
...+ .+|...|+.+.|+.. ++++++.|.+|++|++. ....++.+.+|+..|.|+.+ .++++++|
T Consensus 311 t~rrVL-vGHrAaVNvVdfd~k-yIVsASgDRTikvW~~s----------t~efvRtl~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 311 TLRRVL-VGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTS----------TCEFVRTLNGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred HHHHHH-hhhhhheeeeccccc-eEEEecCCceEEEEecc----------ceeeehhhhcccccceehhc--cCeEEEec
Confidence 3334 799999999999755 89999999999999998 67889999999999999987 47899999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCccee------eeeeecCCcCceE
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR------CMAFLEGHEKPVK 326 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~------~~~~~~~h~~~v~ 326 (357)
+.|.+|++||+..+. .+..+.||..-|.|+.|+.+.+++|+.||.|++||+..+...+ ++..+..|.+.|.
T Consensus 377 SSDntIRlwdi~~G~---cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGA---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred CCCceEEEEeccccH---HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 999999999999998 5677889999999999999999999999999999998764332 4556677999999
Q ss_pred EEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 327 SLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+.|..- .+++++.|.+|.+||
T Consensus 454 rLQFD~f---------qIvsssHddtILiWd 475 (499)
T KOG0281|consen 454 RLQFDEF---------QIISSSHDDTILIWD 475 (499)
T ss_pred EEeecce---------EEEeccCCCeEEEEE
Confidence 9999654 899999999999997
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=265.40 Aligned_cols=283 Identities=25% Similarity=0.424 Sum_probs=251.0
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
...+.+.+.+ |..+|+.+-|. -..+++++.| +|++||. .+++....+++ |...|.+|+|+..+ |++
T Consensus 97 Rp~l~~~l~g-----~r~~vt~v~~hp~~~~v~~as~d~tikv~D~-~tg~~e~~LrG---Ht~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 97 RPNLVQKLAG-----HRSSVTRVIFHPSEALVVSASEDATIKVFDT-ETGELERSLRG---HTDSVFDISFDASGKYLAT 167 (406)
T ss_pred CCCchhhhhc-----cccceeeeeeccCceEEEEecCCceEEEEEc-cchhhhhhhhc---cccceeEEEEecCccEEEe
Confidence 3344555554 99999999999 5677788889 9999999 99999999999 99999999999876 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.|-.+++||..+- .++++.. .+|...|.+++|-| +++++++.|.+|+
T Consensus 168 cSsDl~~~LWd~~~~--~~c~ks~---------------------------~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTF--FRCIKSL---------------------------IGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred cCCccchhheeHHHH--HHHHHHh---------------------------cCcccceeeEEEEecCCeeeeccccccee
Confidence 999999999999763 2333322 28999999999999 9999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
.|++.++.++.++ .+|...+..+..+.||. +++++.|.++++|-+. ...+...++.|+.+|.+++|-|
T Consensus 219 ~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~----------t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 219 AWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA----------TKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred EEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec----------cchhhhhhhccccceEEEEecc
Confidence 9999999999999 89999999999999994 8999999999999987 4556677889999999999976
Q ss_pred C---------------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCC
Q 038568 245 D---------------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 245 ~---------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~ 307 (357)
. +.++.+++.|++|++||+.++. ++.++.+|...|..++|+ |+||+++.+|+++++||++
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 2 2589999999999999999997 566888999999999998 5599999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ++...+..|..-|++++|+.+.+ +++||+.|.++++|.
T Consensus 365 ~~---~cmk~~~ah~hfvt~lDfh~~~p-------~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NL---QCMKTLEAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWE 404 (406)
T ss_pred cc---eeeeccCCCcceeEEEecCCCCc-------eEEeccccceeeeee
Confidence 97 78888889999999999999998 999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=267.03 Aligned_cols=324 Identities=21% Similarity=0.343 Sum_probs=258.1
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
-.+-|+++-..+++. |...|.|+.|+ |+++|+++.| +|.+||- .+++.+..+....+|.+.|.+++|+||.
T Consensus 174 ffeGPPFKFk~s~r~-----HskFV~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs 247 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFRE-----HSKFVNCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDS 247 (603)
T ss_pred EeeCCCeeeeecccc-----cccceeeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCC
Confidence 345677777778876 99999999999 9999999999 9999999 9999999999666699999999999997
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEec-------------ccccccccccccEEEEE
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRR-------------HKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~ 149 (357)
++|++.|.+++|||+.+.+..+.+.......+++....++...+.... ....+..+|...|+++.
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence 999999999999999999887777766666677766666544332211 12256689999999999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEE---------------------------------------
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNA--------------------------------------- 188 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--------------------------------------- 188 (357)
.++ .+|++|+.||.|.-||..++..-......|...|.+
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999 999999999999999998766433322233333333
Q ss_pred -----------------------------------------EEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 189 -----------------------------------------VVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 189 -----------------------------------------~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
++++|++ .+++|+.|+.|++|.+. . .....
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~------g--~~l~e 479 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS------G--DELKE 479 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec------C--Ccccc
Confidence 4445555 35566666666666654 1 11123
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEe
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIW 304 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw 304 (357)
......|.++|++++|+||+.+|++|...+.+.+||..+.+. ......-|...|.|++|+|+ ++|+|+-|-.|.||
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 334567999999999999999999999999999999998765 23333449999999999998 99999999999999
Q ss_pred eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++..+. +.+....+|...|+.+.|-.+. .+++.|.|..|++|+
T Consensus 558 sv~kP~--~~i~iknAH~~gVn~v~wlde~--------tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 558 SVKKPA--KHIIIKNAHLGGVNSVAWLDES--------TVVSSGQDANIKVWN 600 (603)
T ss_pred EccChh--hheEeccccccCceeEEEecCc--------eEEeccCcceeEEec
Confidence 999874 3366778899999999998887 699999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=246.71 Aligned_cols=273 Identities=18% Similarity=0.332 Sum_probs=235.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+..++.|.++++. ..+.|+.+... ++.||+|+...||+||+ ++. .++.+|.+ |...|+++.|..++
T Consensus 26 qa~tG~C~rTiqh-----~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~-~S~np~Pv~t~e~---h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 26 QALTGICSRTIQH-----PDSQVNRLEITPDKKDLAAAGNQHVRLYDL-NSNNPNPVATFEG---HTKNVTAVGFQCDGR 96 (311)
T ss_pred ehhcCeEEEEEec-----CccceeeEEEcCCcchhhhccCCeeEEEEc-cCCCCCceeEEec---cCCceEEEEEeecCe
Confidence 6678999999994 56789999998 78888887779999999 553 36889998 99999999999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++|++||+++|||++.....+.+ .|.++|+++..+| ..|++|..+
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~-------------------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNY-------------------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhc-------------------------------cCCCCcceEEecCCcceEEeecCC
Confidence 999999999999999985443333 6779999999999 889999999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
|.|++||+.+..+...+.......|.++.+.|+| +++.+...|..++|++-.. .......++..++.|.+.+..+
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~----~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH----QTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC----CccccceEhhheecccceEEEE
Confidence 9999999998877777656667899999999999 5888888999999998741 2234567788899999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
.+||++++|++++.|.+++||+.++. +.....+.+|...+..++|+.+ ||++|+.|+.+++|+++.+ +.+...
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy 296 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQY 296 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeec
Confidence 99999999999999999999999876 4455678899999999999877 9999999999999999998 667788
Q ss_pred cCCcCceEEEEEe
Q 038568 319 EGHEKPVKSLVAI 331 (357)
Q Consensus 319 ~~h~~~v~~~~~~ 331 (357)
.+|..+..+++..
T Consensus 297 ~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 297 QGHHKAAVCVALN 309 (311)
T ss_pred CCcccccEEEEee
Confidence 8998888777653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=277.84 Aligned_cols=286 Identities=17% Similarity=0.306 Sum_probs=247.4
Q ss_pred cceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
+.+.+.++.+ |+..|+++.|. +.+|++++.| .|+||++...+.++++|.+ |..+|.+++|++++ ++
T Consensus 203 Pkk~~~~~~g-----H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g---H~k~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSG-----HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG---HRKPVRDASFNNCGTSFL 274 (503)
T ss_pred cHhheeeccC-----CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc---chhhhhhhhccccCCeee
Confidence 4455666775 99999999998 8999999999 9999999666999999999 99999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCe
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRS 163 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~ 163 (357)
+++.|+.|++||+++++....+.. ...++|+.|+| +.+++|+.|+.
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~-------------------------------~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHL-------------------------------DKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred eeecceeeeeeccccceEEEEEec-------------------------------CCCceeeecCCCCCcEEEEecCCCc
Confidence 999999999999999987776643 35688999999 79999999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeee-eEeeccccceeEEE
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLV-TTLVKHRSTVNALA 241 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 241 (357)
|+.||+++++.++.+ ..|-+.|..+.|-+++ ++++.+.|+.+++|+.+ ...++ .....+.....++.
T Consensus 324 i~~wDiRs~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~----------~~v~ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR----------IPVPIKNIADPEMHTMPCLT 392 (503)
T ss_pred EEEEeccchHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC----------CCccchhhcchhhccCccee
Confidence 999999999999999 8999999999999999 69999999999999987 22222 22223344567899
Q ss_pred EecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.+|+++++++-+.|+.|.+|.+...-+....+.+.+|..+ -..+.|+|+ +|++|+.||.+.+||.++- +.+..
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~ 469 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSK 469 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh---hhhhc
Confidence 9999999999999999999998766655566677787643 455667776 9999999999999999986 77888
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++|.+++..+.|+|... ..+||+|.||.|++||
T Consensus 470 lkah~~~ci~v~wHP~e~------Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEP------SKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCc------ceeEecccCceeEecC
Confidence 999999999999999876 3899999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=268.12 Aligned_cols=275 Identities=24% Similarity=0.322 Sum_probs=237.8
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCC---ccccceecc-------ccCCCCceEEEEEecCc--eEEeecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISD---YSHVDTFSN-------DLSSSGSVKSITFHITK--IFTAHQD 91 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~-------~~~~~~~v~~l~~~~~~--l~~~~~d 91 (357)
|..+|.+.+|+ ..++++|+.| ..++|++.+. ......|+. ..+....|++++|+.++ |++|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 99999999999 4589999999 9999999321 111111110 11245789999999887 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 169 (357)
|.+++|+..... ... +..|.++|.++.|+. .+|++++.|+++.+||.
T Consensus 257 G~~riw~~~G~l-~~t------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 257 GEARIWNKDGNL-IST------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred cEEEEEecCchh-hhh------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 999999987542 222 238999999999999 89999999999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.++...+.+ .-|..+-..+.|-.+..|++++.|+.|+++.+. ...+..++.+|.++|.++.|+|.+.+|
T Consensus 306 ~~g~~~q~f-~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~----------~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 306 HTGTVKQQF-EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG----------EDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred cCceEEEee-eeccCCccceEEecCceEeecCCCceEEEEEec----------CCCcceeeecccCceEEEEECCCCceE
Confidence 999988888 677777788999988899999999999999987 567888899999999999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-----------eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-----------LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
++++.|++++||++.... ....+.+|...|..+.|+|. .+++++.|++|++||+..+ .++..+
T Consensus 375 aS~SdD~TlkiWs~~~~~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f 448 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSN---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTL 448 (524)
T ss_pred EEecCCCeeEeeecCCCc---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEee
Confidence 999999999999987665 56678889988988888753 8999999999999999998 888999
Q ss_pred cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 319 EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|..+|.+++|+|+++ ++++|+.||.|.+|+
T Consensus 449 ~kH~~pVysvafS~~g~-------ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGR-------YLASGSLDGCVHIWS 480 (524)
T ss_pred ccCCCceEEEEecCCCc-------EEEecCCCCeeEecc
Confidence 99999999999999999 999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=269.01 Aligned_cols=273 Identities=19% Similarity=0.310 Sum_probs=239.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+.+|..+.|. |+.|++|+.. ...+|+. ........++. |..+|.++.|++++ +++|..+|.|++|+.+-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg-~~fnFEtilQa---HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG-TSFNFETILQA---HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecC-ceeeHHHHhhh---hcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 45679999999 8999999999 9999998 66665666676 99999999999987 999999999999998643
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
.. ..+. ..|...|++++|+| ..+++++.||+|+|||....+....+ .
T Consensus 171 nV-k~~~-----------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~ 219 (464)
T KOG0284|consen 171 NV-KIIQ-----------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-R 219 (464)
T ss_pred hh-HHhh-----------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-c
Confidence 22 1111 15558999999999 89999999999999999998888888 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
+|.-.|.++.|+|.. .+++++.|..|++||.+ ...++.++.+|+..|..+.|+|++++|++++.|..++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr----------Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR----------SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCC----------CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 999999999999976 79999999999999998 6778899999999999999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
++|+++.+ .+..+.+|+..++++.|+|- +|.+|+.||.|..|.+...+ .....-.+|...|++++|+|-|.
T Consensus 290 v~DiR~mk---El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGh- 363 (464)
T KOG0284|consen 290 VFDIRTMK---ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGH- 363 (464)
T ss_pred EEehhHhH---HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccce-
Confidence 99999665 45677889999999999874 99999999999999998542 22334468999999999999998
Q ss_pred CCCCeEEEEEcCCCCeEEecC
Q 038568 337 ASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.|.++++|.
T Consensus 364 ------il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 364 ------ILATGSNDRTVRFWT 378 (464)
T ss_pred ------eEeecCCCcceeeec
Confidence 999999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=244.05 Aligned_cols=285 Identities=22% Similarity=0.340 Sum_probs=234.5
Q ss_pred ecccccCCCCCCCccceeEEEEe-c--ceEEEeeCC-ceEEEeccCC---ccccceeccccCCCCceEEEEEecCc--eE
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH-N--SLLYAASLN-EINVFDLISD---YSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s-~--~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++.++ | |.+.|..++|+ + ..||+++.| .|+||+. .. ......+.. +|+..|.+++|+|.+ |+
T Consensus 6 ~~~~~~---g--h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~-~~~~s~~ck~vld~--~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 6 LEQKLS---G--HKDRVWSVAWHPGKGVILASCGTDKAVRIWST-SSGDSWTCKTVLDD--GHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred eEEeec---C--CCCcEEEEEeccCCceEEEeecCCceEEEEec-CCCCcEEEEEeccc--cchheeeeeeecCCCcEEE
Confidence 344555 4 99999999999 4 499999999 9999999 53 334444443 499999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+|+.|.++.||.-..++ ..++..+ ++|...|.+++|++ ++||++++|+.|
T Consensus 78 ~aSFD~t~~Iw~k~~~e-fecv~~l---------------------------EGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGE-FECVATL---------------------------EGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EeeccceEEEeecCCCc-eeEEeee---------------------------eccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 99999999999876543 3444444 39999999999999 999999999999
Q ss_pred EEEEcCcc---hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 165 KIWNASNY---KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
-||.+..+ +++..+ ..|...|..+.|+|.. .|++++.|.+|++|+-. . .....+...+.+|...|.++
T Consensus 130 WiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~------~-dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE------D-DDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred EEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeec------C-CCCeeEEEEecCccceEEEE
Confidence 99998743 466666 8999999999999966 79999999999999865 2 34678899999999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC---cceeee-e
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE---NCYRCM-A 316 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~---~~~~~~-~ 316 (357)
+|+|.|..|++++.|++++||...+.- ...|..++..++|....|++++.|+.|++|.-... ..+..+ .
T Consensus 202 ~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 202 AFDNIGSRLVSCSDDGTVSIWRLYTDL-------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred EecCCCceEEEecCCcceEeeeeccCc-------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 999999999999999999999876331 12377888999999669999999999999987642 112222 2
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.-..|...|+++.|.|..+ .+|++||+||.|++|.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~------~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVS------NRLASGGDDGIVNFWE 309 (312)
T ss_pred hhcccccccceEEEcCCCC------CceeecCCCceEEEEE
Confidence 4467999999999999532 2899999999999994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=238.89 Aligned_cols=274 Identities=15% Similarity=0.290 Sum_probs=230.0
Q ss_pred ecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ 90 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~ 90 (357)
..+.++. |.++|.++.|+ |+|.++++.| +|++|++ ..+..++++.+ |...|..++.+.|. |++|+.
T Consensus 9 r~~~l~~-----~qgaV~avryN~dGnY~ltcGsdrtvrLWNp-~rg~liktYsg---hG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 9 RLSILDC-----AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP-LRGALIKTYSG---HGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred hceeecc-----cccceEEEEEccCCCEEEEcCCCceEEeecc-cccceeeeecC---CCceeeeccccccccccccCCC
Confidence 4455665 99999999999 9999999999 9999999 99999999999 99999999988765 999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 168 (357)
|..+.+||+++++..+.+. +|.+.|+.+.|+. ..+++|+.|.++++||
T Consensus 80 Dk~v~vwDV~TGkv~Rr~r------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFR------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred CceEEEEEcccCeeeeecc------------------------------cccceeeEEEecCcceEEEeccccceeEEEE
Confidence 9999999999998776654 9999999999999 8999999999999999
Q ss_pred cCc--chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 169 ASN--YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 169 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
.++ .++++.+ ......|.++..... .+++|+.||+++.||++ .+...... ...+|+++.|++++
T Consensus 130 CRS~s~ePiQil-dea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR----------~G~l~sDy--~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 130 CRSRSFEPIQIL-DEAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIR----------KGTLSSDY--FGHPITSVSFSKDG 195 (307)
T ss_pred cccCCCCccchh-hhhcCceeEEEeccc-EEEeeccCCcEEEEEee----------cceeehhh--cCCcceeEEecCCC
Confidence 875 5678888 777888999987543 69999999999999999 34443333 34689999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE--ee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL--IN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
+..++++.|+++++.|-.+++ .+....+|.+.-..+ .+ +...+++|++||.|++||+... ..+..+..+.
T Consensus 196 nc~La~~l~stlrLlDk~tGk---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~ 269 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGK---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVS 269 (307)
T ss_pred CEEEEeeccceeeecccchhH---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCC
Confidence 999999999999999999998 455666776654222 22 3339999999999999999987 6677778788
Q ss_pred Cc-eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 323 KP-VKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 323 ~~-v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.. |++++++|... -|+++. ++.+.+|
T Consensus 270 ~v~v~dl~~hp~~~-------~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 270 TVIVTDLSCHPTMD-------DFITAT-GHGDLFW 296 (307)
T ss_pred ceeEEeeecccCcc-------ceeEec-CCceece
Confidence 87 89999999987 566665 3344444
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=284.08 Aligned_cols=275 Identities=20% Similarity=0.385 Sum_probs=225.9
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEE
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFT 87 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 87 (357)
..+.-|..++.. -...++|..|+ +.+||.|-.| .|++|.+ .. +.++.++. ...+. .+=+
T Consensus 365 ~lpSic~YT~~n-----t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl-~p-~kl~~lk~----~~~l~-------~~d~ 426 (707)
T KOG0263|consen 365 SLPSICMYTFHN-----TYQGVTCAEFSDDSSMLACGFVDSSVRVWSL-TP-KKLKKLKD----ASDLS-------NIDT 426 (707)
T ss_pred CCCcEEEEEEEE-----cCCcceeEeecCCcchhhccccccEEEEEec-ch-hhhccccc----hhhhc-------cccc
Confidence 344555555553 44567888887 6677777777 8888887 43 24444442 11110 1223
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
.+.|-.+.+.|.++...... +.+|.++|..+.|+| ++|++++.|++++
T Consensus 427 ~sad~~~~~~D~~~~~~~~~------------------------------L~GH~GPVyg~sFsPd~rfLlScSED~svR 476 (707)
T KOG0263|consen 427 ESADVDVDMLDDDSSGTSRT------------------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVR 476 (707)
T ss_pred cccchhhhhccccCCceeEE------------------------------eecCCCceeeeeecccccceeeccCCccee
Confidence 33333355555544433222 239999999999999 9999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+|.+.+..++-.+ .+|..+|..+.|+|.| +|++++.|++.++|... ...+.+.+.+|.+.|.|+.|+|
T Consensus 477 LWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d----------~~~PlRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 477 LWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD----------HNKPLRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred eeecccceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecc----------cCCchhhhcccccccceEEECC
Confidence 9999999999988 7999999999999999 59999999999999987 5678889999999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
+..|+++|+.|.++|+||+.++. ..+.+.||.++|.+++|+|. +|++|+.||.|.+||+.++ ..+..+.+|.
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht 619 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGN---SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SLVKQLKGHT 619 (707)
T ss_pred cccccccCCCCceEEEEEcCCCc---EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cchhhhhccc
Confidence 99999999999999999999998 45677899999999999887 9999999999999999998 7788899999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|.++.|+.++. .||+||.|.+|++||
T Consensus 620 ~ti~SlsFS~dg~-------vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 620 GTIYSLSFSRDGN-------VLASGGADNSVRLWD 647 (707)
T ss_pred CceeEEEEecCCC-------EEEecCCCCeEEEEE
Confidence 9999999999998 999999999999998
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=260.08 Aligned_cols=290 Identities=20% Similarity=0.321 Sum_probs=237.9
Q ss_pred cccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEe
Q 038568 7 VSSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
......+.+..+.+.. |.+.|+-+.|| |+|||+|+.| +..+|++... .+..+++.+ |..+|..+.|+
T Consensus 207 c~~~qip~qt~qil~~-----htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg---h~~~V~yi~wS 278 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQD-----HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG---HSQPVSYIMWS 278 (519)
T ss_pred cCcccCCchhhhhHhh-----CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec---ccCceEEEEEC
Confidence 3444556777777876 99999999999 9999999999 9999998322 234677777 99999999999
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
||. |++++.|..+.+||+.++.....+.. ++...+.+++|.| ..+++
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-----------------------------~~~~S~~sc~W~pDg~~~V~ 329 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-----------------------------GLGFSVSSCAWCPDGFRFVT 329 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhccc-----------------------------CcCCCcceeEEccCCceeEe
Confidence 986 99999999999999999976555432 5567899999999 78999
Q ss_pred EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
|+.|+.+..||+. |..+..+.......|.+++..+|| ++++.+.|..|++|+... ... ..+.....+
T Consensus 330 Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~----------~~d-r~lise~~~ 397 (519)
T KOG0293|consen 330 GSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA----------RVD-RGLISEEQP 397 (519)
T ss_pred cCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh----------hhh-hccccccCc
Confidence 9999999999985 555666644445679999999999 588888999999999861 111 113345678
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecC---ceEEEecCCCeEEEeeCCCCcc
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVG---DLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
|+++..+.+++++++.-.+..|++||++... .+....||+.. +..-+|.+ .++++|++|+.|+||+..++
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-- 472 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-- 472 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhh---HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--
Confidence 9999999999999999999999999999655 44566677643 33333433 39999999999999999998
Q ss_pred eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++.++.||...|++++|+|..+ .++|+||+||+||||-
T Consensus 473 -kll~~LsGHs~~vNcVswNP~~p------~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 473 -KLLAVLSGHSKTVNCVSWNPADP------EMFASASDDGTIRIWG 511 (519)
T ss_pred -ceeEeecCCcceeeEEecCCCCH------HHhhccCCCCeEEEec
Confidence 88999999999999999999887 5899999999999993
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=272.14 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=245.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEec---ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEE-EecC-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVHN---SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSIT-FHIT- 83 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~---~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~- 83 (357)
+....+..+.+-| .++.|.+++|-| ++||+++.- .+|+|+. .+...- .+.+ |...|.+++ |+.+
T Consensus 309 d~~~l~i~k~ivG-----~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c~-ii~G---H~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 309 DEDELTIVKQIVG-----YNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYCQ-IIPG---HTEAVLSLDVWSSGD 378 (775)
T ss_pred EccccEEehhhcC-----CchhheeeeecCCccceEEEEeCCCceEEEec-CCCceE-EEeC---chhheeeeeecccCc
Confidence 3445566666665 889999999984 899999999 9999998 664443 7777 999999999 4444
Q ss_pred ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEec
Q 038568 84 KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSW 160 (357)
Q Consensus 84 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~ 160 (357)
.|+||+.|.++++|.++.+....... ....+|.+.|.+++++. .+|+++|.
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~--------------------------a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCV--------------------------AQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhh--------------------------hhhcccccccceeeecccCccEEEEecC
Confidence 39999999999999995443211111 11239999999999977 89999999
Q ss_pred CCeEEEEEcCcch---------hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 161 DRSFKIWNASNYK---------CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 161 dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
|+++++|++...+ +..+. ..|...|++++++|+. .+++|+.|.+.++|++. .......+
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~-~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le----------~~~l~~vL 501 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTE-RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE----------QLRLLGVL 501 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHH-HhhcccccceEecCCCceEEecccccceeeeccc----------CceEEEEe
Confidence 9999999987622 11122 6799999999999988 59999999999999997 67788999
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
.+|...|.++.|+|..+.+++++.|++|+||.+.+.. +.+++.||...|....|-.+ .|++++.||-|++|++.+
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999999999999999999999999999999877 67889999999998888644 999999999999999999
Q ss_pred CcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 309 ENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ .++..+.+|.+.|++++.+|... +++||+.||.|.+|.
T Consensus 579 ~---eC~~tlD~H~DrvWaL~~~~~~~-------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 579 N---ECEMTLDAHNDRVWALSVSPLLD-------MFVTGGGDGRIIFWK 617 (775)
T ss_pred h---hhhhhhhhccceeEEEeecCccc-------eeEecCCCeEEEEee
Confidence 8 88899999999999999999998 999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=255.80 Aligned_cols=270 Identities=19% Similarity=0.304 Sum_probs=238.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+..|++++|+ |.+||+|+.| .++||+. ++..+.++.. |+++|.++.|+..+ |++++.|+++.+||..++
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~--~G~l~~tl~~---HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNK--DGNLISTLGQ---HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEec--Cchhhhhhhc---cCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 45789999999 9999999999 9999997 6688888987 99999999999877 999999999999999888
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
...+.+. .|+.+-.++.|.. ..+++++.|+.|+++.+....++.++ .+
T Consensus 309 ~~~q~f~------------------------------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~-~G 357 (524)
T KOG0273|consen 309 TVKQQFE------------------------------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF-IG 357 (524)
T ss_pred eEEEeee------------------------------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceee-ec
Confidence 7655443 6677778899988 99999999999999999999999999 77
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC---------CEEEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG---------SLLFS 251 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~ 251 (357)
|.++|.++.|+|.+ .|++++.|++++||... .......+.+|...|+.+.|+|.| ..+++
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~----------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMG----------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecC----------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 99999999999999 59999999999999976 456677888999999999999854 47999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
++.|++|++||+..+. ++..+..|..+|.+++|+|+ ++|+|+.||.|.+|+.+++ +.++...+ .+.|..++
T Consensus 428 as~dstV~lwdv~~gv---~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~---~l~~s~~~-~~~Ifel~ 500 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGV---PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG---KLVKSYQG-TGGIFELC 500 (524)
T ss_pred eecCCeEEEEEccCCc---eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch---heeEeecC-CCeEEEEE
Confidence 9999999999999887 55667789999999999976 9999999999999999997 55666654 55699999
Q ss_pred EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+.++. .|..+-.||.+++-|
T Consensus 501 Wn~~G~-------kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAGD-------KLGACASDGSVCVLD 521 (524)
T ss_pred EcCCCC-------EEEEEecCCCceEEE
Confidence 999998 888888899988754
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=270.10 Aligned_cols=323 Identities=23% Similarity=0.359 Sum_probs=250.7
Q ss_pred cccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCC-ccccceeccccCCCCceEEEEEecCc
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISD-YSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.....|.+.|++ |.+.|.++.|. ..+|++|+.| .+++||+ .+ ..++.++.. |...|++++|.+|.
T Consensus 134 i~~~~~th~fkG-----~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl-~~~~tcl~~~~~---H~S~vtsL~~~~d~ 204 (775)
T KOG0319|consen 134 IKNGYCTHSFKG-----HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL-NDKRTCLHTMIL---HKSAVTSLAFSEDS 204 (775)
T ss_pred eeCCEEEEEecC-----CCceEEEEEeCCccchhheeecCCCceEEEEEc-ccCchHHHHHHh---hhhheeeeeeccCC
Confidence 346778889997 99999999999 4578899999 9999999 54 445888888 99999999999987
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCcccccee---------------------eeec------------------
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLI---------------------RSVL------------------ 123 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---------------------~~~~------------------ 123 (357)
+++++.|..+.+||+.+-+....+........... ..+.
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~ 284 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI 284 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence 99999999999999855332221111111000000 0000
Q ss_pred --------CCCeEEEec------------------------------------------------------ccccccccc
Q 038568 124 --------PNNYVTVRR------------------------------------------------------HKKRLWLEH 141 (357)
Q Consensus 124 --------~~~~~~~~~------------------------------------------------------~~~~~~~~~ 141 (357)
....+.+.. ....++.+|
T Consensus 285 ~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH 364 (775)
T KOG0319|consen 285 DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGH 364 (775)
T ss_pred hcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCc
Confidence 000000000 000455899
Q ss_pred cccEEEEE-Eec-CeEEEEecCCeEEEEEcCcc----hhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccc
Q 038568 142 WDAVSDLV-VKQ-GLMYSVSWDRSFKIWNASNY----KCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 142 ~~~v~~~~-~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~ 213 (357)
...|.++. |.. .+|++|+.|.++++|.++++ .++... .+|...|.+++++..+ .|++++.|+++++|++..
T Consensus 365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 99999999 444 59999999999999987443 244555 7899999999997766 599999999999999984
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L 291 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 291 (357)
.+.... ............|...|++++++|+.+++++|+.|++.+||++.... ....+.||+..+.++.|++. .
T Consensus 444 s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 444 SKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred cccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEeeCCccceEEEEeccccce
Confidence 111100 11111222456799999999999999999999999999999999544 67889999999999999987 9
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++.|++|+||.+.+. .++.++.||...|..+.|-.++. .|+|++.||.|++||
T Consensus 520 laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~-------qliS~~adGliKlWn 575 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGK-------QLISAGADGLIKLWN 575 (775)
T ss_pred eEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCc-------EEEeccCCCcEEEEe
Confidence 999999999999999986 89999999999999999999998 999999999999997
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=259.28 Aligned_cols=272 Identities=31% Similarity=0.539 Sum_probs=233.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|++++|+ +++|++++.| .|++|+. .+.+....+.. |...+..+.|+|++ +++++.||.|++|++.++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-ETGELLRTLKG---HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEe-eCCCcEEEEec---CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 99999999999 7999999999 9999999 77777777777 99999999999986 999999999999999876
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+....+. .|...+.++.|.+ .++++++.+|.|.+||+++++....+ .
T Consensus 84 ~~~~~~~------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 132 (289)
T cd00200 84 ECVRTLT------------------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-R 132 (289)
T ss_pred cceEEEe------------------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-c
Confidence 4433332 6777899999999 67777777999999999988888887 6
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.|...+.++.++|++. +++++.++.|++||++ ..+....+..|...+.++.|+|+++.+++++.|+.|+
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc----------ccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 7888999999999875 5556669999999997 3445566678888999999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+||++.++ ....+..|...+.++.++++ ++++++.||.|++|++.++ +....+..|...|.+++|+|+++
T Consensus 203 i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-- 274 (289)
T cd00200 203 LWDLSTGK---CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGK-- 274 (289)
T ss_pred EEECCCCc---eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCC--
Confidence 99998765 34445568889999999885 7777777999999999976 55666778999999999999988
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||
T Consensus 275 -----~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 -----RLASGSADGTIRIWD 289 (289)
T ss_pred -----EEEEecCCCeEEecC
Confidence 999999999999997
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=250.06 Aligned_cols=286 Identities=24% Similarity=0.390 Sum_probs=242.6
Q ss_pred ccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-C-c---e
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-T-K---I 85 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~---l 85 (357)
++.+....+. |.+.|.++...++.|++|+.| .+++||. .|+....+.+ |.++|.+++|.- + . |
T Consensus 94 ~aP~pl~~~~------hdDWVSsv~~~~~~IltgsYDg~~riWd~--~Gk~~~~~~G---ht~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 94 TAPKPLQCFL------HDDWVSSVKGASKWILTGSYDGTSRIWDL--KGKSIKTIVG---HTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred CCCCcccccc------chhhhhhhcccCceEEEeecCCeeEEEec--CCceEEEEec---CCcceeeeEEEecCCccceE
Confidence 3445566666 999999999999999999999 9999997 6688889998 999999998872 2 2 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
++++.|.++++|.++.++....... .-.+|...|-++...+ ..+++|+.|..
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~--------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALK--------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHh--------------------------HhcccccceeEEEecCCCCeEEeecccce
Confidence 9999999999999987764322211 1129999999999888 89999999999
Q ss_pred EEEEEcCc-------------------------chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 164 FKIWNASN-------------------------YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 164 i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
|.+|+..+ ..++..+ .+|..+|.++.|++.+.+++++.|.+|+.||+.
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle------ 289 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE------ 289 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcCCCceEeecccceEEEEEee------
Confidence 99999321 1123334 789999999999998889999999999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~ 295 (357)
.......+. .....++++++|..++|++|+.|..|++||.+++.-......+.+|.+.|.++.|+|. +|++|
T Consensus 290 ----tg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 290 ----TGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ----cccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 333344443 3567899999999999999999999999999998877788899999999999999987 89999
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|+++++||+++.+ .+++.+.+|.+.|.++.|.... .+++||.|.+|+++
T Consensus 365 S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~~--------~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEGG--------LIVSGGADNKLRIF 415 (423)
T ss_pred ecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCCc--------eEEeccCcceEEEe
Confidence 999999999999873 5799999999999999998876 79999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=254.78 Aligned_cols=250 Identities=22% Similarity=0.365 Sum_probs=223.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEe
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTA 88 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 88 (357)
+....+|++.|.+ |++.|.|+.|..+.|++|+.| +|+|||+ ++++++.++-+ |.+.|..+.|+.+.++++
T Consensus 223 D~n~~~c~~~L~G-----HtGSVLCLqyd~rviisGSSDsTvrvWDv-~tge~l~tlih---HceaVLhlrf~ng~mvtc 293 (499)
T KOG0281|consen 223 DKNSLECLKILTG-----HTGSVLCLQYDERVIVSGSSDSTVRVWDV-NTGEPLNTLIH---HCEAVLHLRFSNGYMVTC 293 (499)
T ss_pred ccccHHHHHhhhc-----CCCcEEeeeccceEEEecCCCceEEEEec-cCCchhhHHhh---hcceeEEEEEeCCEEEEe
Confidence 4456778888886 999999999998899999999 9999999 99999999998 999999999999999999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN 168 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd 168 (357)
+.|.++.+||+.......... ++.+|...|+.+.|+.+++++++.|.+|++|+
T Consensus 294 SkDrsiaVWdm~sps~it~rr---------------------------VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 294 SKDRSIAVWDMASPTDITLRR---------------------------VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred cCCceeEEEeccCchHHHHHH---------------------------HHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 999999999998876544433 33499999999999999999999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+.+++.+.++ .+|...|.|+.+. +..+++|+.|.+|++||+. .+.+++.+.+|..-|.++.|+ .+.
T Consensus 347 ~st~efvRtl-~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~----------~G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 347 TSTCEFVRTL-NGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE----------CGACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred ccceeeehhh-hcccccceehhcc-CeEEEecCCCceEEEEecc----------ccHHHHHHhchHHhhhheeec--Cce
Confidence 9999999999 9999999998873 2368999999999999998 677889999999999999996 568
Q ss_pred EEEEecCCeEEEEecccCCcee------eeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC
Q 038568 249 LFSGGCDRWIVVWERERDHRMV------FAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~ 309 (357)
+++|+.||+|+|||+..+.... .+..+..|.+.|..+.|+.-.+++++.|.+|-+||+.++
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999999999998765431 234556799999999999999999999999999999876
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=271.67 Aligned_cols=274 Identities=24% Similarity=0.470 Sum_probs=232.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|...|.|+.|+ |+++++++.+ .+++|+. ...+ ....+.+ |...|.+++|+|++ +++++.|++|++||+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKL-EGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeec-ccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 48899999999 9999999999 9999999 7777 6777766 99999999999998 9999999999999994
Q ss_pred Cc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 AS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
.. ...+.+ .+|...|++++|+| +++++|+.|++|++||+++++++..
T Consensus 234 ~~~~~~~~l------------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 234 DDGRNLKTL------------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred CCCeEEEEe------------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 33 333322 39999999999999 7999999999999999999999999
Q ss_pred ccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEEEecCCCEEEEEec
Q 038568 178 VNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~ 254 (357)
+ .+|...|++++|++++ .|++++.|+.|++||+.. .... +...+..+.. +++++.|+|++.++++++.
T Consensus 284 l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~------~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 284 L-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET------GSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred e-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCC------Ccee--eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9 9999999999999999 588999999999999982 1111 3445555544 4999999999999999999
Q ss_pred CCeEEEEecccCCceeeeeeccCCccceEEE---ee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCC-cCceEEE
Q 038568 255 DRWIVVWERERDHRMVFAEALWGHTGALLCL---IN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSL 328 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~ 328 (357)
|+.+++||+..+.. .....+|...+.|+ .. .+.++++|+.|+.|++|++.++ ..+..+.+| ...+..+
T Consensus 355 d~~~~~w~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKS---VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDL 428 (456)
T ss_pred CCeEEEEEccCCcc---eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceecc
Confidence 99999999998874 34455566644333 22 2349999999999999999986 667788899 8999999
Q ss_pred EEeeCCCCCCCCeEEEEEcC--CCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGS--LNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~--~dg~v~~wd 357 (357)
.++|..+ ++++++ .|+.+++|.
T Consensus 429 ~~~~~~~-------~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 429 SSHPTEN-------LIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCcC-------eeeecCcCCCceEEEec
Confidence 9999998 999998 799999994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=244.28 Aligned_cols=287 Identities=15% Similarity=0.208 Sum_probs=235.8
Q ss_pred cccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC
Q 038568 17 IASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD 91 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d 91 (357)
+.+|.. |++.|.+++.+ .+++|||+.| .-.||+. .+++....+.+ |+..|+++.|+.++ |+||..+
T Consensus 57 ~~tF~~-----H~~svFavsl~P~~~l~aTGGgDD~AflW~~-~~ge~~~eltg---HKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 57 LVTFDK-----HTDSVFAVSLHPNNNLVATGGGDDLAFLWDI-STGEFAGELTG---HKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred eeehhh-----cCCceEEEEeCCCCceEEecCCCceEEEEEc-cCCcceeEecC---CCCceEEEEEccCceEEEecCCC
Confidence 445554 99999999999 8899999999 9999999 88898889998 99999999999987 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 169 (357)
|.|+||+..++.....+. ..-..+.-+.|+| ..|++|+.||.+.+|.+
T Consensus 128 G~v~v~~~stg~~~~~~~------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLD------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ccEEEEEcccCceEEEee------------------------------cccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 999999999887655443 2345788899999 89999999999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc---------------------------
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK--------------------------- 221 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------- 221 (357)
.++...+.+ .+|..++++-.|.|+| +++++..||+|++||+.+.+......
T Consensus 178 p~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 987667777 8899999999999999 59999999999999998654321100
Q ss_pred ------cceeeeeEee--------ccccceeEEEEec---CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE
Q 038568 222 ------SRHMLVTTLV--------KHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284 (357)
Q Consensus 222 ------~~~~~~~~~~--------~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 284 (357)
...+.+.... .+...+.++.+.| .-.+.|+|+.||+|.|||+...+ ++....|...|..
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----LRHICEHEDGVTK 332 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----hheeccCCCceEE
Confidence 0111111111 1223333444433 44578899999999999998764 2334458888999
Q ss_pred EeecC-ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 285 LINVG-DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 285 ~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|.+ .+|++++.+|.|+.||.+++ +++....+|..+|.+++.+|+.+ +++|+|.|++.+|++
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~~~-------~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQKR-------LVVTVSDDNTALVFE 396 (399)
T ss_pred EEEcCcchheeeccCceEEeeecccc---ceEEEEecCchheeEEEEcCCCc-------EEEEecCCCeEEEEe
Confidence 99998 59999999999999999998 88899999999999999999998 999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=235.28 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=212.6
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
..+++++ |.+.|.++.|++|. |++++.||.+.|||.-+......+.
T Consensus 47 ~rr~LkG---H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip----------------------------- 94 (343)
T KOG0286|consen 47 TRRTLKG---HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP----------------------------- 94 (343)
T ss_pred eEEEecc---cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-----------------------------
Confidence 3477888 99999999999987 9999999999999988776544443
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc------hhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY------KCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
-....|..++|+| +++|+|+.|+...||++.+. +....+ .+|.+.+.|..|.+|+.|++++.|.++.+||
T Consensus 95 -l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 95 -LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred -cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 4467899999999 99999999999999999865 233345 7899999999999999999999999999999
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
++ ..+....+.+|.+.|.+++++| +++.+++|+.|+..++||++.+. ..+.+.+|...|.++.|.|
T Consensus 173 ie----------~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---c~qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 173 IE----------TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---CVQTFEGHESDINSVRFFP 239 (343)
T ss_pred cc----------cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---eeEeecccccccceEEEcc
Confidence 98 6778889999999999999999 99999999999999999999886 6778899999999999987
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ -+++|++|++.|+||++..++.. +.....-..+|++++|+..++ +|++|..|..+.+||
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGR-------lLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGR-------LLFAGYDDFTCNVWD 301 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEccccc-------EEEeeecCCceeEee
Confidence 7 99999999999999999874332 222334457899999999998 999999999999998
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=258.75 Aligned_cols=318 Identities=17% Similarity=0.285 Sum_probs=239.7
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+.++....+++.+ |...|.++.|+ .++|++|+.| .++||.+ +..+. ...+.+ |..+|.+.-|..+.
T Consensus 131 ~~~pFvl~r~~~g-----~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v-~~~k~~~~~~l~g---Hkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 131 EFNPFVLHRTYLG-----HFDDITSIDWSDDSRLLVTGSRDLSARLFGV-DGNKNLFTYALNG---HKDYVVACFFGANS 201 (893)
T ss_pred ccCcceEeeeecC-----CccceeEEEeccCCceEEeccccceEEEEEe-ccccccceEeccC---CCcceEEEEeccCc
Confidence 3456667777776 99999999999 8899999999 9999999 66555 445555 99999999999876
Q ss_pred --eEEeecCCeEEEEecCCc--cceee----------------------e-------eecCcc-ccceeeeecCCCeEEE
Q 038568 85 --IFTAHQDCKIRVWKITAS--RQHQL----------------------V-------STLPTV-KDRLIRSVLPNNYVTV 130 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~--~~~~~----------------------~-------~~~~~~-~~~~~~~~~~~~~~~~ 130 (357)
+++.+.||.+.+|..... ..... . .-+... .......+.+...+.+
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 999999999999987621 00000 0 000000 0000011111111111
Q ss_pred eccccccc--------------ccccccEEEEEEec--CeEEEEecC-CeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 131 RRHKKRLW--------------LEHWDAVSDLVVKQ--GLMYSVSWD-RSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 131 ~~~~~~~~--------------~~~~~~v~~~~~~~--~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
.+-....+ .-...+|..++|+. +.++.|+.. |.+-+|+..+...+... .+|...+++++++|
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSp 360 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSP 360 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECC
Confidence 11111111 11224666777775 777776654 78888888877766666 78999999999999
Q ss_pred CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee
Q 038568 194 NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA 272 (357)
Q Consensus 194 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 272 (357)
|| ++++|+.||.|++||.+ ...+..++..|.+.|+.+.|+..++.+++.+.||+|+.||+...+....+
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~----------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQ----------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CCcEEEeccCCCcEEEEecc----------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 99 59999999999999987 67789999999999999999999999999999999999999987755444
Q ss_pred eeccCCccceEEEeecCceEEEecCCC-eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 273 EALWGHTGALLCLINVGDLLASGSADR-TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
.....-.....++.++++.+++|+.|. .|.+|++++| +.+..+.||.+||.+++|+|.+. .|+|+|.|.
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~-------~LaS~SWDk 500 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGS-------LLASGSWDK 500 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccC-------eEEeccccc
Confidence 433322233344445577888888875 6999999998 88899999999999999999999 999999999
Q ss_pred eEEecC
Q 038568 352 EIKVWD 357 (357)
Q Consensus 352 ~v~~wd 357 (357)
+||+||
T Consensus 501 TVRiW~ 506 (893)
T KOG0291|consen 501 TVRIWD 506 (893)
T ss_pred eEEEEE
Confidence 999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=232.67 Aligned_cols=247 Identities=21% Similarity=0.348 Sum_probs=204.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+...+..++.+++ |...|..++.+ |++.++++.| .+++||+ .+++..+.|.+ |...|.+++|++|.
T Consensus 49 d~~~G~~~r~~~G-----HsH~v~dv~~s~dg~~alS~swD~~lrlWDl-~~g~~t~~f~G---H~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 49 DIKYGVPVRRLTG-----HSHFVSDVVLSSDGNFALSASWDGTLRLWDL-ATGESTRRFVG---HTKDVLSVAFSTDNRQ 119 (315)
T ss_pred ccccCceeeeeec-----cceEecceEEccCCceEEeccccceEEEEEe-cCCcEEEEEEe---cCCceEEEEecCCCce
Confidence 4455666777776 99999999999 9999999999 9999999 89899999999 99999999999986
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEec
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSW 160 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~ 160 (357)
+++|+.|.+|++|++........... .+.+.|+|+.|+| .++++++.
T Consensus 120 ivSGSrDkTiklwnt~g~ck~t~~~~-----------------------------~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLGVCKYTIHED-----------------------------SHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred eecCCCcceeeeeeecccEEEEEecC-----------------------------CCcCcEEEEEEcCCCCCcEEEEccC
Confidence 99999999999999976543222211 3478999999999 58999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|++|++||+++.+....+ .+|...++.++++||| .+++|+.||.+.+||++ ..+.++.+ .|...|.+
T Consensus 171 DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~----------~~k~lysl-~a~~~v~s 238 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN----------EGKNLYSL-EAFDIVNS 238 (315)
T ss_pred CceEEEEccCCcchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEcc----------CCceeEec-cCCCeEee
Confidence 999999999999999988 8999999999999999 68999999999999998 34444444 57899999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeee------ccCCccceEEEeecC--ceEEEecCCCeEEEeeCC
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA------LWGHTGALLCLINVG--DLLASGSADRTVRIWQRG 307 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~ 307 (357)
++|+|+.-.|+.+. +..|+|||+.+...+..+.. .........+++|+. ..|++|-.|+.|++|.+.
T Consensus 239 l~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999876666554 55599999998765433321 111133456778884 499999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=259.10 Aligned_cols=291 Identities=21% Similarity=0.303 Sum_probs=243.0
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC--ceEEEeccCCccccceeccccCCCCceEEEEEecC
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT 83 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 83 (357)
-++.|...+++.+.. -..+|..++|+ |++||.|+.. ++.||++ .+...+-..++ |...+++++++||
T Consensus 291 LyelP~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g~~klgQLlVweW-qsEsYVlKQQg---H~~~i~~l~YSpD 361 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW-QSESYVLKQQG---HSDRITSLAYSPD 361 (893)
T ss_pred EEecCCceEEEEeec-----ccceeeEEEecccCCEEEEcCCccceEEEEEe-eccceeeeccc---cccceeeEEECCC
Confidence 356788888998886 66899999999 9999999988 9999999 88788878887 9999999999999
Q ss_pred c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 84 K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 84 ~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
+ ++||+.||.|+|||..++-+ +.++. .|++.|+.++|+. +.+++.+
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC---~vTFt---------------------------eHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFC---FVTFT---------------------------EHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceE---EEEec---------------------------cCCCceEEEEEEecCCEEEEee
Confidence 7 99999999999999998854 43333 8999999999999 8899999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCC-eEEEEEccccccccccccceeeeeEeeccccce
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
-||+|+.||+...+..+++..+......|++..|.|. +++|+.|. .|.+|+++ .++.+..+.+|.++|
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q----------TGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ----------TGQLLDILSGHEGPV 481 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee----------cCeeeehhcCCCCcc
Confidence 9999999999999999999666777788999999995 55555554 59999998 678899999999999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceee-
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRC- 314 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~- 314 (357)
.+++|+|.+..|++++.|++|++||+-.... ...++ .+...++.++|.|+ .|+++..||.|.+||...+.+...
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCc--eeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 9999999999999999999999999875432 11222 35667788888755 999999999999999976522100
Q ss_pred ----------------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 ----------------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...-.......+.+++++|+. .+++||....|++||
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-------~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-------CILAGGESNSICIYD 610 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCCCC-------EEEecCCcccEEEEE
Confidence 011112346799999999999 999999999999986
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=240.15 Aligned_cols=239 Identities=23% Similarity=0.384 Sum_probs=215.1
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+..+.+.+ |.+.|.|+++.|.. |++|+.|++++|||+.+++....+.
T Consensus 142 Kl~rVi~g---HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt---------------------------- 190 (460)
T KOG0285|consen 142 KLYRVISG---HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT---------------------------- 190 (460)
T ss_pred eehhhhhh---ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------------------
Confidence 44556666 99999999999976 9999999999999999997655443
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
+|-..|..+++++ .++++++.|+.|+.||++..+.+..+ .+|-..|.|++.+|.- .|++|+.|.++++||++
T Consensus 191 --Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-- 265 (460)
T KOG0285|consen 191 --GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-- 265 (460)
T ss_pred --chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeec--
Confidence 8999999999999 99999999999999999999999999 8999999999999976 69999999999999999
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
....+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|+ .+
T Consensus 266 --------tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt---~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 266 --------TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT---MITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred --------ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce---eEeeecccceeeEEecCCchhhh
Confidence 5667888999999999999999777899999999999999999984 4566679999999999988 77
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++.|. |+-|++..+ ..+..+.+|..-|++++...|+ ++++|++.|.+.+||
T Consensus 335 ASas~dn-ik~w~~p~g---~f~~nlsgh~~iintl~~nsD~--------v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 335 ASASPDN-IKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG--------VLVSGGDNGSIMFWD 387 (460)
T ss_pred hccCCcc-ceeccCCcc---chhhccccccceeeeeeeccCc--------eEEEcCCceEEEEEe
Confidence 8888775 999999988 5566689999999999999998 899999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=243.89 Aligned_cols=289 Identities=20% Similarity=0.294 Sum_probs=237.5
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~ 101 (357)
|...|++++|- .-+++||+.| .|.+|+- ...+.-.+++. |..-|.|+.|+||+ +++++.||++.+||=.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~---HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEG-PPFKFKSSFRE---HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeC-CCeeeeecccc---cccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 99999999998 6689999999 9999998 88888888887 99999999999998 99999999999999999
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc-
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV- 178 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~- 178 (357)
++....+.... +|.+.|.+++|+| ..+++++.|.+++|||+.+.+++.++
T Consensus 222 ge~vg~l~~~~---------------------------aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 222 GEKVGELEDSD---------------------------AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred ccEEEEecCCC---------------------------CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 98776665422 8999999999999 89999999999999998876544332
Q ss_pred -----------------------------------------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 179 -----------------------------------------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 179 -----------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
..+|...|+++..+|++ +|++|+.||.|.-|+...+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 15788999999999999 699999999999999875433
Q ss_pred cccc-c-------------------------------------------cceee-------------------eeEeecc
Q 038568 217 NKER-K-------------------------------------------SRHML-------------------VTTLVKH 233 (357)
Q Consensus 217 ~~~~-~-------------------------------------------~~~~~-------------------~~~~~~~ 233 (357)
.... + ...++ +..++.+
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 2100 0 00000 0001101
Q ss_pred --------ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 234 --------RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 234 --------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
.-...+++++|++..+++|+.|+.|+||.+...... ....+..|.+++++++++|+ +||+|...+.+.+
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-ceeeeecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence 113467899999999999999999999999876543 33345679999999999998 9999999999999
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+.+.+. ......-|...|.+++|+|+.. ++||||.|-.|.||+
T Consensus 514 yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~-------~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 514 YDVASREV--KTNRWAFHTAKINCVAWSPNNK-------LVATGSLDTNVIIYS 558 (603)
T ss_pred EEcccCce--ecceeeeeeeeEEEEEeCCCce-------EEEeccccceEEEEE
Confidence 99998743 3445566999999999999998 999999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=277.73 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=220.5
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc----c----ccceeccccCCCCceEEEEEecC---ceEEeecCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY----S----HVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~----~----~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~ 93 (357)
|.+.|++++|+ +++||+|+.| .|+||+. ... . +...+. +...|.+++|++. .|++++.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~-~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFEC-ESIIKDGRDIHYPVVELA----SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CcccccccccccceEEec----ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 89999999999 8999999999 9999997 431 1 112222 4568999999874 2999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcC
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~ 170 (357)
|++||+.+++....+ .+|...|++++|+| .+|++|+.||.|++||++
T Consensus 557 v~lWd~~~~~~~~~~------------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 557 VQVWDVARSQLVTEM------------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred EEEEECCCCeEEEEe------------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 999999877543332 28999999999986 689999999999999999
Q ss_pred cchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
++..+..+ . +...+.++.|++ ++ .|++|+.|+.|++||++. .......+.+|...|.++.|. ++.+
T Consensus 607 ~~~~~~~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~---------~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 607 QGVSIGTI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRN---------PKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred CCcEEEEE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC---------CCccceEecCCCCCEEEEEEe-CCCE
Confidence 98888777 3 346789999965 45 699999999999999971 122445667899999999997 6789
Q ss_pred EEEEecCCeEEEEecccCC---ceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeee--------
Q 038568 249 LFSGGCDRWIVVWERERDH---RMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCM-------- 315 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~-------- 315 (357)
|++++.|+.|++||++... ....+..+.+|...+.++.++++ +|++|+.|+.|++|+...+......
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 9999999999999997532 11245667789988888877765 9999999999999998754211100
Q ss_pred --eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 --AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 --~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.....|...|.+++|+|++. .|++|+.||.|++||
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~-------~lva~~~dG~I~i~~ 791 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSS-------TLVAANSTGNIKILE 791 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCC-------eEEEecCCCcEEEEe
Confidence 01234567799999999998 999999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=261.31 Aligned_cols=247 Identities=26% Similarity=0.395 Sum_probs=214.4
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
.+=+.+.| .+.+.|. +.....+++.+ |.++|....|+|+. |++++.|+++|+|.+.+.......
T Consensus 423 ~~d~~sad~~~~~~D~-~~~~~~~~L~G---H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--------- 489 (707)
T KOG0263|consen 423 NIDTESADVDVDMLDD-DSSGTSRTLYG---HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--------- 489 (707)
T ss_pred cccccccchhhhhccc-cCCceeEEeec---CCCceeeeeecccccceeeccCCcceeeeecccceeEEEe---------
Confidence 44466777 7888888 66677777888 99999999999987 999999999999999987654433
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
.+|..+|+++.|+| -++||++.|++.++|.....++++.+ .+|-+.|.|+.|+|+.
T Consensus 490 ---------------------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-aghlsDV~cv~FHPNs 547 (707)
T KOG0263|consen 490 ---------------------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-AGHLSDVDCVSFHPNS 547 (707)
T ss_pred ---------------------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-cccccccceEEECCcc
Confidence 39999999999999 88999999999999999999999999 8999999999999998
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
++++|+.|.+||+||+. ++..++.+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++. .+..
T Consensus 548 ~Y~aTGSsD~tVRlWDv~----------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---~v~~ 614 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVS----------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---LVKQ 614 (707)
T ss_pred cccccCCCCceEEEEEcC----------CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---chhh
Confidence 79999999999999998 566788999999999999999999999999999999999999987 5567
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcce---------------------eeeeeecCCcCceEEEEEe
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCY---------------------RCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~---------------------~~~~~~~~h~~~v~~~~~~ 331 (357)
+.+|.+.+.++.|+.+ .||+|+.|++|++||+...... ..+..+..-..+|.++.|.
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ft 694 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFT 694 (707)
T ss_pred hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEe
Confidence 7889999999988765 9999999999999998653211 1344455566788888887
Q ss_pred eCCC
Q 038568 332 SSSS 335 (357)
Q Consensus 332 ~~~~ 335 (357)
...-
T Consensus 695 rrNl 698 (707)
T KOG0263|consen 695 RRNL 698 (707)
T ss_pred ccce
Confidence 7664
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=227.20 Aligned_cols=273 Identities=19% Similarity=0.319 Sum_probs=226.8
Q ss_pred eEEEEe---cceEEEee-------CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEe
Q 038568 33 SCLAVH---NSLLYAAS-------LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWK 98 (357)
Q Consensus 33 ~~~~~s---~~~l~t~~-------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd 98 (357)
.++.|| .++||++. .. .+.|-++ ...+-+..+.... -...+..++|+++. +++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~-~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEV-TDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEec-CCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEec
Confidence 567888 56666543 23 8889998 5545554444221 67889999999865 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
+.... ..+ ..++.|...|.++.|++ ..+++++.|++|++|+...++.+
T Consensus 90 ~~~~s--~Pi---------------------------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 90 LTMPS--KPI---------------------------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred cCCCC--cch---------------------------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 64332 222 33459999999999999 67888899999999999999999
Q ss_pred hhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEE
Q 038568 176 ESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSG 252 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 252 (357)
.++ .+|...|....|+|.- .+++++.|+.+++||++. .++.+. +..|...+.++.|+. +.+.|++|
T Consensus 141 ~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 141 QTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------PGKFMS-IEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred Eee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------CCceeE-EEeccceeEeecccccCCcEEEec
Confidence 999 8999999999999964 799999999999999982 334443 788999999999998 67799999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
+.|+.|++||++.-+. ++..+.+|.-+|..+.|+|. .|++++.|-++|+||...+. .++.+...|.+-|.++.
T Consensus 210 ~vd~~vr~wDir~~r~--pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRT--PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred CCCceEEEEehhhccc--cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 9999999999998764 46677899999999999987 99999999999999998653 55667778999999999
Q ss_pred EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++-.+ .++|+++.|+.++||+
T Consensus 286 ws~~~~------~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDP------GQVASTGWDELLYVWN 307 (311)
T ss_pred cccccC------ceeeecccccceeeec
Confidence 998754 3999999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=261.15 Aligned_cols=280 Identities=23% Similarity=0.380 Sum_probs=242.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+..|..++|+ ..+++++-.. .|++||. .-+..+..|.. |.++|..++|+|.+ +++|+.|..|+||+..+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDY-RM~tli~rFde---HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDY-RMGTLIDRFDE---HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehh-hhhhHHhhhhc---cCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 67789999999 7788888888 9999999 88999999998 99999999999998 999999999999999887
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
++...+ .+|-+.|..+.|++ ..++++|.|-+|+||+..+.+++..+ .
T Consensus 84 rclftL------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-t 132 (1202)
T KOG0292|consen 84 RCLFTL------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-T 132 (1202)
T ss_pred eehhhh------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-e
Confidence 655433 39999999999999 89999999999999999999999999 9
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc-------------------cceeeeeEeeccccceeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK-------------------SRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~ 240 (357)
+|..-|.|..|+|.. .+++++-|.+||+||+.......... ........+.+|...|+-+
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999999999954 89999999999999987433221110 1122345678999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
+|+|.-.++++|+.|..|++|.+...+.. ...+..+|.+.|.++-|+| +++++.++|++|+|||+... ..+..+
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tf 288 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTF 288 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeee
Confidence 99999999999999999999999866544 6678899999999999999 59999999999999999976 667777
Q ss_pred cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE
Q 038568 319 EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353 (357)
Q Consensus 319 ~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v 353 (357)
+.-.+.-+.++.+|..+ +++.|-+.|.+
T Consensus 289 rrendRFW~laahP~lN-------LfAAgHDsGm~ 316 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELN-------LFAAGHDSGMI 316 (1202)
T ss_pred eccCCeEEEEEecCCcc-------eeeeecCCceE
Confidence 77778899999999998 77777655544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=253.74 Aligned_cols=239 Identities=25% Similarity=0.381 Sum_probs=217.1
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+++.. +...|.++.++|.. ++++-.+|.+.||+.++....+.+. -
T Consensus 7 rk~~~---rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe------------------------------V 53 (794)
T KOG0276|consen 7 RKFQS---RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE------------------------------V 53 (794)
T ss_pred hHhhc---cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee------------------------------e
Confidence 44555 88999999999988 8888889999999999887665554 3
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 217 (357)
..-+|.+..|-+ +.+++|+.|..|++|+.++++.+..| .+|.+-|.+++.+|.. ++++++.|-.|++||.+
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----- 127 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----- 127 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence 356888888888 89999999999999999999999999 9999999999999988 79999999999999997
Q ss_pred cccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 292 (357)
....+.+.+.+|...|.+++|+| |.+.+++++-|++|+||.+.+.. +..++.+|...|.|+.+-+. +|
T Consensus 128 ----~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 128 ----NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYTGGDKPYL 200 (794)
T ss_pred ----CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEeccCCCcceE
Confidence 46788999999999999999999 77899999999999999998776 55677899999999998643 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++|.+|+|||..+. .++.++.||...|..+.|+|.-+ +++|||.||+||||+
T Consensus 201 IsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lp-------iiisgsEDGTvriWh 255 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELP-------IIISGSEDGTVRIWN 255 (794)
T ss_pred EecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCc-------EEEEecCCccEEEec
Confidence 99999999999999997 88999999999999999999999 999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=234.50 Aligned_cols=243 Identities=23% Similarity=0.380 Sum_probs=217.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++++.+.|++ |.+.|..++|+ |++||+++.| .+.+||.....+.++.+.+ |...|.++.|-|.+ ++
T Consensus 138 ~tg~~e~~LrG-----Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g---h~h~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 138 ETGELERSLRG-----HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG---HEHGVSSVFFLPLGDHIL 209 (406)
T ss_pred cchhhhhhhhc-----cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC---cccceeeEEEEecCCeee
Confidence 46777777876 99999999999 9999999999 9999999444777888887 99999999999976 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|.+|+.|++.++-.+. +++ +|...|..+..+. .++++++.|.+|
T Consensus 210 S~srD~tik~We~~tg~cv~---t~~---------------------------~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVK---TFP---------------------------GHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred ecccccceeEEecccceeEE---ecc---------------------------CchHhEEEEEecCCeeEEEecCCCceE
Confidence 99999999999999985443 333 8889999999988 889999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecC--------------C--eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDN--------------G--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
++|-+.++++...+ ..|+.+|.+++|.|. + .+.+++.|++|++||+. ...++.
T Consensus 260 ~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----------tg~cL~ 328 (406)
T KOG0295|consen 260 RVWVVATKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----------TGMCLF 328 (406)
T ss_pred EEEEeccchhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----------CCeEEE
Confidence 99999999999999 899999999999752 1 58899999999999998 678999
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
++.+|...|..++|+|.|+||+++.+|+++++||+++.++ ...+..|...++++.|+.+ ++++|+-|..+++|.-
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee---eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999998874 4566689999999999877 9999999999999964
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=250.39 Aligned_cols=270 Identities=24% Similarity=0.368 Sum_probs=241.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|+..|.++.|+ ...++++-.+ .|.||+. ++...++.|.. ...||.+..|-+.. +++|+.|..|+||+.++.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWny-etqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNY-ETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEec-ccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 88999999999 7788888788 9999999 99999999998 88999999999876 999999999999999998
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-hhhhhcc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-KCLESVN 179 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 179 (357)
+.+..+. .|.+.|.+++.+| .+++++|.|-+|++||.+.+ .+.+++
T Consensus 88 ekV~~Fe------------------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf- 136 (794)
T KOG0276|consen 88 EKVKTFE------------------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF- 136 (794)
T ss_pred eeeEEee------------------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-
Confidence 7655443 8999999999999 99999999999999999864 466667
Q ss_pred ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEEEecC
Q 038568 180 KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFSGGCD 255 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d 255 (357)
.+|..-|.+++|+|.. .+++++-|++|++|.+. ...+..++.+|...|+|+.|-+.| .+|++|+.|
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg----------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG----------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcC----------CCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 9999999999999976 69999999999999997 566778889999999999998844 599999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+|+|||.++.. +++++.||...|..+.|+|. .+++|++||++|||+..+- +....+.-.-+.|++++-.+.
T Consensus 207 ~tiKvWDyQtk~---CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 207 LTIKVWDYQTKS---CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKG 280 (794)
T ss_pred ceEEEeecchHH---HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCC
Confidence 999999999887 66789999999999999998 9999999999999998874 666667777789999999888
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+. .++.|.+.|.|.+
T Consensus 281 ~~-------~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DG-------KIAVGFDEGSVTV 295 (794)
T ss_pred CC-------eEEEeccCCcEEE
Confidence 87 8888888887653
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=259.11 Aligned_cols=269 Identities=27% Similarity=0.488 Sum_probs=242.2
Q ss_pred CccceeEEEEecceEEEeeCC-ceEEEeccCCccccce-eccccCCCCceEEEEEe--cCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDT-FSNDLSSSGSVKSITFH--ITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~-~~~~~~~~~~v~~l~~~--~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|...+.+..|.+.++++++.+ +|++||. .++..+.. +.+ |.+.|.++++. .+.|++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~G---H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDL-NNGYLILTRLVG---HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeec-ccceEEEeeccC---CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 567889999999999999999 9999999 77777777 998 99999999999 5559999999999999999997
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcccccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (357)
+...+. +|.+.+.++...+..+++|+.|.+|++|++.++.++..+ .+|.
T Consensus 283 C~~~l~------------------------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~ 331 (537)
T KOG0274|consen 283 CTHSLQ------------------------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL-RGHT 331 (537)
T ss_pred EEEEec------------------------------CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe-cccc
Confidence 665543 899999999999999999999999999999999999999 6699
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.+|.++..+ ...+++|+.|++|++||+. ..+++..+.+|...|+++.+.+. ..+++|+.|+.|++||+
T Consensus 332 ~~V~~v~~~-~~~lvsgs~d~~v~VW~~~----------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 332 GPVNCVQLD-EPLLVSGSYDGTVKVWDPR----------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ccEEEEEec-CCEEEEEecCceEEEEEhh----------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 999999998 5689999999999999998 78899999999999999988765 79999999999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
++.. ..+..+.+|..-+..+.+.+++|++++.|+.|++||..++ +++..+.+ |...|+.+++. ..
T Consensus 400 ~~~~--~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~------- 465 (537)
T KOG0274|consen 400 RTKR--KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KE------- 465 (537)
T ss_pred Cchh--hhhhhhcCCcccccccccccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC--cc-------
Confidence 9883 2677888999999999999999999999999999999998 66777777 67889999887 22
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
.+++++.||.+++||
T Consensus 466 ~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWD 480 (537)
T ss_pred eEEEEecCCeeEEEe
Confidence 788899999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=251.31 Aligned_cols=271 Identities=18% Similarity=0.331 Sum_probs=236.4
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
|...|.+++++ ...+++|+.+.|+||+. ++.+.++++.. +.+.+..|.|.. +++|...|.+.++|+.+..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~-~t~kciRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNR-DTLKCIRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEc-cCcceeEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 99999999999 34444554459999999 99999999964 489999999975 9999999999999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh-----hh
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC-----LE 176 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-----~~ 176 (357)
....+. .|.+.|++++..| ..+++|+.|.+|++||..--.. ..
T Consensus 446 l~Eti~------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 446 LVETIR------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred hhhhhh------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 655543 8999999999999 8999999999999999753111 11
Q ss_pred hc------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 177 SV------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 177 ~~------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.+ .......|.|+.++||+ +|+++--|.+|++|-+. ..+....+.+|.-||.||..+||++.+
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD----------tlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD----------TLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec----------ceeeeeeecccccceeEEeccCCcCeE
Confidence 01 12446789999999999 58888899999999988 567788899999999999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
++|+.|..|++|-++=+. +.+.+.+|...|+++.|-|+ .+.++|.|+.|+-||-.+ +..+..+.+|...|++
T Consensus 566 vTgSADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWC 639 (888)
T ss_pred EeccCCCceEEeccccch---hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhheeeccchheeee
Confidence 999999999999998777 56788899999999999998 899999999999999886 4788999999999999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++.+|+|. +++|+|.|..||+|.
T Consensus 640 Lav~~~G~-------~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 640 LAVSPNGS-------FVVSSSHDKSIRLWE 662 (888)
T ss_pred eEEcCCCC-------eEEeccCCceeEeee
Confidence 99999999 999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=242.17 Aligned_cols=233 Identities=24% Similarity=0.413 Sum_probs=206.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|..+|+++.|+ +.++++|+.+ .|++|+. ....++.++. .|...|++++|+|+. +++++.||+|+|||....
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp--nmnnVk~~~a--hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQP--NMNNVKIIQA--HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEeccc--chhhhHHhhH--hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 99999999999 9999999999 9999997 4466777766 245999999999965 999999999999999876
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+....+ .+|.-.|.+++|+| .++++++.|..|++||.+++.++.++ .
T Consensus 213 kee~vL------------------------------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h 261 (464)
T KOG0284|consen 213 KEERVL------------------------------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-H 261 (464)
T ss_pred chhhee------------------------------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-h
Confidence 654333 29999999999999 89999999999999999999999999 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWI 258 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 258 (357)
.|+..|..+.|++++ +|++++.|..++++|++ ..+.+..+++|+..|+++.|+| ...+|.+|+.||.|
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR----------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR----------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehh----------HhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999998 79999999999999998 4556778899999999999999 66799999999999
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..|.+...++ ......+|...|.+++|+|- +|++|+.|.++++|.-.
T Consensus 332 vh~~v~~~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEecccccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999985443 23344579999999999986 99999999999999754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=245.52 Aligned_cols=321 Identities=22% Similarity=0.344 Sum_probs=239.6
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-Cc-eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-TK-IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~~~~ 89 (357)
...-++. | |+.+|+++.|+ |..||+||.| .|.+||+ -...-+..+++ |...|+.+-|.. +. +++.+
T Consensus 98 ~~~~tfn---g--HK~AVt~l~fd~~G~rlaSGskDt~IIvwDl-V~E~Gl~rL~G---Hkd~iT~~~F~~~~~~lvS~s 168 (888)
T KOG0306|consen 98 EILITFN---G--HKAAVTTLKFDKIGTRLASGSKDTDIIVWDL-VGEEGLFRLRG---HKDSITQALFLNGDSFLVSVS 168 (888)
T ss_pred ceeeeec---c--cccceEEEEEcccCceEeecCCCccEEEEEe-ccceeeEEeec---chHHHhHHhccCCCeEEEEec
Confidence 3444555 4 99999999999 9999999999 9999999 66677778888 999999999998 44 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCcc--------------------------------------------------cccee
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTV--------------------------------------------------KDRLI 119 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~ 119 (357)
.|+.|++||+++..+........+. .++..
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i 248 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREI 248 (888)
T ss_pred cCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCcee
Confidence 9999999999774322111000000 00000
Q ss_pred e-eecCC-CeEEEecccc--------------------------------------------------------------
Q 038568 120 R-SVLPN-NYVTVRRHKK-------------------------------------------------------------- 135 (357)
Q Consensus 120 ~-~~~~~-~~~~~~~~~~-------------------------------------------------------------- 135 (357)
. ....+ .++...+...
T Consensus 249 ~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv 328 (888)
T KOG0306|consen 249 NLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDV 328 (888)
T ss_pred EEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEE
Confidence 0 00000 0000000000
Q ss_pred --------------------------------------cccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhh
Q 038568 136 --------------------------------------RLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 136 --------------------------------------~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
-...+|...|.+++++. +.++..+..+.+++|+..+.+++.
T Consensus 329 ~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 329 TPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIR 408 (888)
T ss_pred EecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeE
Confidence 11257888999999999 555555556789999988777665
Q ss_pred hc---------------------------------------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 177 SV---------------------------------------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 177 ~~---------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
++ ..+|.+.+.+++.+||+ .+++|+.|.+|++||......
T Consensus 409 Ti~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 409 TITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred EeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 54 15688999999999999 499999999999999875433
Q ss_pred ccccccce-ee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 217 NKERKSRH-ML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 217 ~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
.+...... .. ......-...|.|+.+||||++|+++--|++++||-+++-+ ..-.+.||.-||.|+..+++ ++
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecccccceeEEeccCCcCeE
Confidence 11111000 00 01112245779999999999999999999999999999776 66788899999999987776 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+||+.|..|++|-+.=| .|-..+-+|.+.|.++.|.|... .+.|+|.|+.|+-||
T Consensus 566 vTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~F~P~~~-------~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQFLPKTH-------LFFTCGKDGKVKQWD 620 (888)
T ss_pred EeccCCCceEEeccccc---hhhhhhhcccCceeEEEEcccce-------eEEEecCcceEEeec
Confidence 99999999999999987 66677889999999999999887 999999999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=213.14 Aligned_cols=243 Identities=23% Similarity=0.362 Sum_probs=210.5
Q ss_pred ccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
.++.+++ |.+.+..++|+|. + |++++.|+.|++|+...+....+...+.
T Consensus 6 ~~~~~~g---h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------------------------- 57 (312)
T KOG0645|consen 6 LEQKLSG---HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------------------------- 57 (312)
T ss_pred eEEeecC---CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-------------------------
Confidence 4556676 9999999999998 3 9999999999999998655444444433
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCc--chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
.+|...|.+++|+| ++|++++.|.++.||.-.. .+++..+ .+|...|.|++|+++| +|++++.|..|-+|.+.
T Consensus 58 -~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 58 -DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred -ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 28999999999999 9999999999999997653 4678888 8999999999999999 69999999999999986
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
+ .....+...+..|...|..+.|+|...+|++++.|++|++|+-..+.......++.+|...|.+++|++.
T Consensus 136 ------e-ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 136 ------E-DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred ------C-CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 2 2357788899999999999999999899999999999999998866667788899999999999999875
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|++++.|++++||...+. ....|+.++..+.|. ++ .|+|++.|+.|++|
T Consensus 209 rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W~-~~--------~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTD-------LSGMHSRALYDVPWD-NG--------VIASGGGDDAIRLF 258 (312)
T ss_pred eEEEecCCcceEeeeeccC-------cchhcccceEeeeec-cc--------ceEeccCCCEEEEE
Confidence 9999999999999997643 123478899999999 54 89999999999987
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=214.51 Aligned_cols=276 Identities=13% Similarity=0.198 Sum_probs=220.0
Q ss_pred CCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEE
Q 038568 23 PSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVW 97 (357)
Q Consensus 23 ~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vw 97 (357)
++| |..+++.+.|+ |++|++++.| +..||-. .+++.+.++.+ |.+.|.|++..-+. +++|+.|.++++|
T Consensus 6 l~G--HERplTqiKyN~eGDLlFscaKD~~~~vw~s-~nGerlGty~G---HtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 6 LQG--HERPLTQIKYNREGDLLFSCAKDSTPTVWYS-LNGERLGTYDG---HTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccc--CccccceEEecCCCcEEEEecCCCCceEEEe-cCCceeeeecC---CCceEEEEEecCCcceeeeccccceeEEE
Confidence 345 99999999999 9999999999 9999998 89999999999 99999999887654 9999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-----CCeEEEEEcC
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----DRSFKIWNAS 170 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~ 170 (357)
|+++++++.... ...+|..+.|+. ++++.... .+.|.++|++
T Consensus 80 Dv~tGk~la~~k-------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 80 DVETGKQLATWK-------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred EcCCCcEEEEee-------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 999998776654 356899999999 44444332 3679999998
Q ss_pred -------cchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 171 -------NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 171 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
..+++..+ ..+.+.++.+-|.|-+ .|++|..||.|..||.++ ..+.+.....|...|+.|.+
T Consensus 129 ~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~---------g~~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDART---------GKELVDSDEEHSSKINDLQF 198 (327)
T ss_pred CChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEccc---------Cceeeechhhhccccccccc
Confidence 34455666 5677899999999988 599999999999999982 23566667789999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE--eeCCCCc--------
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI--WQRGKEN-------- 310 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v--w~~~~~~-------- 310 (357)
++|..++++++.|.+-++||.++-+.+.... ...++.+.+++|. .++.|+.-..--| =+.+.++
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 9999999999999999999999876443332 3567888888774 5554443222111 1112221
Q ss_pred -ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 311 -CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 311 -~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..+.+...++|-+||++++|+|+++ ..+||+.||.||+.
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGk-------sYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGK-------SYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCc-------ccccCCCCceEEEE
Confidence 0134567889999999999999999 99999999999973
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=217.75 Aligned_cols=269 Identities=18% Similarity=0.279 Sum_probs=226.9
Q ss_pred CccceeEEEEe-----cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH-----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~ 99 (357)
|+.+|-.++|+ |-+|++++.| .=.+-+- +++.=+.+|.+ |.+.|.+...+.+. -++++.|-+.++||.
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeg---hkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEG---HKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeec---cCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 99999999999 7899999999 8888888 88999999999 99999999998875 788899999999999
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-hhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-CLE 176 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~ 176 (357)
-++..+..+ .|..-|.+++|+. ++|++|+.+..+++||++..+ +..
T Consensus 89 ~tgdelhsf-------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 89 VTGDELHSF-------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred hhhhhhhhh-------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 988765544 7888999999999 999999999999999998765 455
Q ss_pred hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 177 SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
.+ .+|.+.|..+.|.... .|+++..|++||+||.+ ....+..+. ...+|+++.++++|++|.++ ..
T Consensus 138 E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----------Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~g 204 (334)
T KOG0278|consen 138 EI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----------TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YG 204 (334)
T ss_pred hh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec----------cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cC
Confidence 55 8999999999997655 68888999999999998 444555554 46789999999999877665 55
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+.|.+||..+-..+.... -...|.+.+.+|+ .+++|+.|..++.||..+++.... ..++|.++|.++.|+|+
T Consensus 205 ssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPD 278 (334)
T ss_pred ceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCC
Confidence 679999999776443322 2345666666665 999999999999999999853332 24899999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ..++||.||+||+|.
T Consensus 279 GE-------~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 279 GE-------LYASGSEDGTIRLWQ 295 (334)
T ss_pred Cc-------eeeccCCCceEEEEE
Confidence 99 999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=236.90 Aligned_cols=266 Identities=20% Similarity=0.311 Sum_probs=227.4
Q ss_pred EEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeec
Q 038568 35 LAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 35 ~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
+.|+ .+.||+|....|++|+. .+++....... +...|+++.|++++ |++|..+|.|.|||..+.+....+..
T Consensus 183 ldWss~n~laValg~~vylW~~-~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~- 257 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSA-SSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG- 257 (484)
T ss_pred hhcccCCeEEEEecceEEEEec-CCCceEEeEec---CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-
Confidence 4555 67888887779999999 77776666654 58999999999988 99999999999999987765554431
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
.|...|.+++|....+.+|+.|+.|..+|++..+.......+|...|..+.|
T Consensus 258 ----------------------------~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 258 ----------------------------SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred ----------------------------CcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 3899999999999999999999999999999988776633889999999999
Q ss_pred ecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEe--cCCeEEEEecccCC
Q 038568 192 SDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGG--CDRWIVVWERERDH 267 (357)
Q Consensus 192 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~vwd~~~~~ 267 (357)
++++ ++++|+.|+.+.|||.. ...+...+..|...|..++|+| ...+||+|+ .|+.|++||..++.
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~----------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGL----------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred CCCCCeeccCCCccceEeccCC----------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 9999 69999999999999986 4567788889999999999999 667888876 49999999999887
Q ss_pred ceeeeeeccCCccceEEEeecCce--EEE--ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 268 RMVFAEALWGHTGALLCLINVGDL--LAS--GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~~--l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
.+..+. ....|..+.|++.+ |++ |..++.|.||+..+. ..+..+.+|...|..++++||+. .
T Consensus 380 ~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~-------~ 445 (484)
T KOG0305|consen 380 RIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGE-------T 445 (484)
T ss_pred Eecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCC-------E
Confidence 543332 45779999999872 443 445789999999985 77889999999999999999998 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++|+.|.++++|+
T Consensus 446 i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 446 IVTGAADETLRFWN 459 (484)
T ss_pred EEEecccCcEEecc
Confidence 99999999999996
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=210.83 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=213.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC--ceEEeec--CCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--KIFTAHQ--DCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~--d~~i~vwd~~ 100 (357)
-.+.|+++.|+ |.+|++++.| .++|||. .++..++++.. +.-.|..+.|... .++.++. |.+|+.-++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~-~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDS-LSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEc-CCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 56789999999 9999999999 9999999 99999999987 8888888988743 3555555 8899999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+.+.++.+ .+|...|.+++.+| +.+++++.|++|++||++..++...+
T Consensus 89 dNkylRYF------------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 89 DNKYLRYF------------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred cCceEEEc------------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 88655433 39999999999999 99999999999999999988887766
Q ss_pred cccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.. ..-..++|.|+|. +|++.....|++||+|..+.. +........+.....+.|.|+|||++|+.++..+.
T Consensus 139 -~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg-----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 139 -NL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG-----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred -ec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC-----CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 22 2334578999996 666666669999999943221 11111111144677899999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSS 334 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 334 (357)
+++.|.-++.....+........--....|.|+ ++++|+.||+|.+|+++++ ..+..+++ +.+++.++.|+|..
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred EEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCce
Confidence 999999988844333332222211244455554 9999999999999999998 55666777 78999999999987
Q ss_pred CCCCCCeEEEEEcCCCCeEEec
Q 038568 335 SSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~w 356 (357)
. +++|++ ..+-+|
T Consensus 288 ~-------mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 288 A-------MFVSAS--SNLVFW 300 (311)
T ss_pred e-------eeeecC--ceEEEE
Confidence 6 777764 456665
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=215.64 Aligned_cols=243 Identities=24% Similarity=0.399 Sum_probs=203.0
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
++..+.+ |++.|+.+.|+|++ |++|+.|..|.+|++..... .+. ++
T Consensus 39 p~m~l~g---h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~---------------------------~l 86 (338)
T KOG0265|consen 39 PIMLLPG---HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFW---------------------------VL 86 (338)
T ss_pred hhhhcCC---CcceEEEEEECCCCCeEeecCCcceEEEEecccccc--cee---------------------------ee
Confidence 4455566 99999999999988 99999999999999764432 111 12
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~ 214 (357)
.+|++.|..+.|.+ +.+++++.|.+++.||+++|+++..+ ..|...++++....-| .+.+++.|+++++||+|
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-- 163 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-- 163 (338)
T ss_pred ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeec--
Confidence 39999999999999 99999999999999999999999999 8999999999855555 48889999999999998
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
....+..+. .+..++++.|..++..+.+|+-|+.|++||++.+. ....+.||..+|+.++.+++ ++
T Consensus 164 --------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~l 231 (338)
T KOG0265|consen 164 --------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---GLYTLSGHADTITGLSLSRYGSFL 231 (338)
T ss_pred --------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc---ceEEeecccCceeeEEeccCCCcc
Confidence 333333332 45678999999999999999999999999999877 56678899999998887765 99
Q ss_pred EEecCCCeEEEeeCCCCcc-eeeeeeecCCcC----ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENC-YRCMAFLEGHEK----PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+-+.|.++++||++.-.+ .+++..+.+|.. .....+|+|++. .+..|+.|..+++||
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-------~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-------KITAGSADRFVYVWD 294 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-------ccccccccceEEEee
Confidence 9999999999999986432 244777777643 355778999998 999999999999997
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=213.87 Aligned_cols=252 Identities=21% Similarity=0.259 Sum_probs=210.1
Q ss_pred cccccc-ccccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEE
Q 038568 4 LHSVSS-EAFKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSI 78 (357)
Q Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l 78 (357)
+++.+. ..+..+..+.+. -.+.+..++|+ .+.+++++.| .++|||+.....+++.++. |...|.++
T Consensus 40 L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE---H~~EV~Sv 110 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE---HKREVYSV 110 (311)
T ss_pred EEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh---hhhheEEe
Confidence 333444 345556666666 67889999999 7889999999 9999998666789999998 99999999
Q ss_pred EEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 79 TFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 79 ~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
.|++.. +++++.|++|++|+...+..+..+ .+|...|...+|+|
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf------------------------------~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF------------------------------NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEee------------------------------cCCccEEEEEecCCCCC
Confidence 999753 888899999999999877544332 28999999999999
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
+.+++++.|+.+++||++..-....+ ..|...+.++.|+.-. .+++|+.|+.|+.||++. ...++..+
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---------~r~pl~eL 230 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---------LRTPLFEL 230 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhh---------ccccceee
Confidence 99999999999999999875444446 7899999999999755 599999999999999992 34568888
Q ss_pred eccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceEEEecCCCeEEEeeC
Q 038568 231 VKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLLASGSADRTVRIWQR 306 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vw~~ 306 (357)
.+|.-.|..+.|+|. ...|++++.|-+++|||...+.. .+.+...|...+..+.|+. .++|+++.|+.++||+.
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999994 45899999999999999986553 4455567888888888764 49999999999999984
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=246.63 Aligned_cols=238 Identities=25% Similarity=0.389 Sum_probs=213.9
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....|..++|+|.+ ++++-..|.|++||.+-+..+..+. .|.++|..+
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd------------------------------eHdGpVRgv 57 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD------------------------------EHDGPVRGV 57 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh------------------------------ccCCcccee
Confidence 67789999999998 9999999999999998876655443 899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
+|+| .++++|+.|-.|++|+.++.+++.++ .+|-+.|..+.|++.- .+++++.|.+|+||+.. ..+
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq----------sr~ 126 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ----------SRK 126 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc----------CCc
Confidence 9999 89999999999999999999999999 9999999999999987 69999999999999998 678
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC--------------------------ceeeeeeccCCc
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH--------------------------RMVFAEALWGHT 279 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------------~~~~~~~~~~~~ 279 (357)
++..+.+|...|.|..|+|....+++++-|.+|||||+..-+ .......+.||.
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 899999999999999999999999999999999999985211 011234567899
Q ss_pred cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 280 GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 280 ~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|...+|+|. +|++|++|..|++|..+..+.++ +.+..+|.+.|+++-|+|... +++|.|.|++||+||
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~-------lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQD-------LILSNSEDKSIRVWD 278 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccc-------eeEecCCCccEEEEe
Confidence 99999999996 99999999999999998765555 667899999999999999887 999999999999998
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=227.93 Aligned_cols=280 Identities=22% Similarity=0.298 Sum_probs=227.4
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--e
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
+.++...+.. |.+.|..+.|- ...|++|+.| .|++|+. ...+ .+.++.+ ..++|+++.|.+++ +
T Consensus 164 pS~~~~~ld~-----h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaG---s~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 164 PSRALFVLDA-----HEGEVHDVEFLRNSDTLATGGSDRIIKLWNV-LGEKSELISTLAG---SLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhhhhhc-----cccccceeEEccCcchhhhcchhhhhhhhhc-ccchhhhhhhhhc---cCCCcceeeecCCCceE
Confidence 4455666666 99999999998 4899999999 9999999 6554 6777877 88999999999876 8
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
++++.|+.+++|+++..+....+. +|.+.|+++.|.. ..+++|+.|.+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS------------------------------GHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc------------------------------ccccceeeehhhccccceeeccccch
Confidence 999999999999999886654443 9999999999988 44999999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
|++||+....|..++ -....+..|+.. ...+++|-.|++|++||.+ ...+......+ +.|+++..+
T Consensus 285 iK~WDl~k~~C~kt~--l~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~R----------s~~~~~sv~~g-g~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTV--LPGSQCNDIVCS-ISDVISGHFDKKVRFWDIR----------SADKTRSVPLG-GRVTSLDLS 350 (459)
T ss_pred hhhhhhhhhheeccc--cccccccceEec-ceeeeecccccceEEEecc----------CCceeeEeecC-cceeeEeec
Confidence 999999998888887 345556667665 3358899999999999998 34455555544 489999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeec---cCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEAL---WGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
+++..|++++.|.++.+.|+++.+...++... .+|. .+.+.|+|+ |+++|+.||.|+||++.++ ++...+
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l 425 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVL 425 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEe
Confidence 99999999999999999999987644333221 1222 455556655 9999999999999999998 444444
Q ss_pred cCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 319 EGHEK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..... .|++++|+|.+. .|++++.++.+.+|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~-------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGS-------GLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCc-------hhhcccCCcceEecC
Confidence 44333 599999999998 999999999999994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=220.48 Aligned_cols=289 Identities=19% Similarity=0.285 Sum_probs=235.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc-----CCCCceEEEEEecCc
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-----SSSGSVKSITFHITK 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~ 84 (357)
+.+..+.++. | .++.+.|..|+ |+||++|+.| .|.+|+. .+++..+.++-.. .+..+|.|+.|+.|.
T Consensus 201 Pt~l~r~IKF--g--~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 201 PTQLARSIKF--G--QKSHVECARFSPDGQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hHHhhhheec--c--cccchhheeeCCCCceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccH
Confidence 4445555554 4 67789999999 9999999999 9999999 8877665443211 378899999999886
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+++|+.||.|++|.+.++.+++.+.. .|...|+|+.|+. ..+++++.
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdr-----------------------------AHtkGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDR-----------------------------AHTKGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhh-----------------------------hhccCeeEEEEccCcchhhcccc
Confidence 99999999999999999987766653 8999999999999 88999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee--ccccce
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRSTV 237 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~v 237 (357)
|.++++.-+++|+++..+ .+|.+.|+...|.++| .+++++.||+|++|+.. ...++.+++ +...+|
T Consensus 327 D~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K----------tteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK----------TTECLSTFKPLGTDYPV 395 (508)
T ss_pred cceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc----------chhhhhhccCCCCcccc
Confidence 999999999999999999 9999999999999999 69999999999999988 333444443 345678
Q ss_pred eEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE--EeecCceEEEecCCCeEEEeeCCCCcceee
Q 038568 238 NALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIWQRGKENCYRC 314 (357)
Q Consensus 238 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 314 (357)
+.+..-| +...++++...++|+|.++.. +....+..-....+...+ ++..++++.+.++|+.++.|.+.++ ..
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~L 471 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KL 471 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ce
Confidence 8887777 556888888999999999873 322222221122233333 4455669999999999999999998 66
Q ss_pred eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..++..|...|.+++-+|-.+ .|++-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqN-------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQN-------LLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccc-------hhhhhcccchhhhcC
Confidence 778889999999999999988 999999999999994
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=217.04 Aligned_cols=290 Identities=18% Similarity=0.313 Sum_probs=225.7
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC------------------ccccceecc
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD------------------YSHVDTFSN 67 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------------------~~~~~~~~~ 67 (357)
++++.++....-. |++++.+.+|+ |.++|||+.| .|+|.|+ +. -..++++..
T Consensus 98 ~e~~~yEt~ylt~------HK~~cR~aafs~DG~lvATGsaD~SIKildv-ermlaks~~~em~~~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 98 PEPSEYETKYLTS------HKSPCRAAAFSPDGSLVATGSADASIKILDV-ERMLAKSKPKEMISGDTQARHPVIRTLYD 170 (430)
T ss_pred CCCcccceEEEee------cccceeeeeeCCCCcEEEccCCcceEEEeeh-hhhhhhcchhhhccCCcccCCceEeehhh
Confidence 3444444444333 99999999999 9999999999 9999999 41 123456665
Q ss_pred ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccE
Q 038568 68 DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145 (357)
Q Consensus 68 ~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (357)
|..+|+++.|+|.. |++++.|++|+++|+......+.++.+ ....+|
T Consensus 171 ---H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~----------------------------qd~~~v 219 (430)
T KOG0640|consen 171 ---HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF----------------------------QDTEPV 219 (430)
T ss_pred ---ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh----------------------------hcccee
Confidence 99999999999976 999999999999999877655555444 345689
Q ss_pred EEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc
Q 038568 146 SDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 146 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
.++.|+| .+|+.|..-.++++||+++.++...-. ..|...|+++.+++.+ ..++++.||.|++||--
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-------- 291 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-------- 291 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc--------
Confidence 9999999 899999999999999999988765432 5688999999999999 58999999999999965
Q ss_pred ccceeeeeEee-cc-ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeecC--ceEE
Q 038568 221 KSRHMLVTTLV-KH-RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINVG--DLLA 293 (357)
Q Consensus 221 ~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~--~~l~ 293 (357)
..+++..+. .| ...|.+..|..+++++++.+.|..+++|.+.+++.+...... |-.+. -+...|+. ++++
T Consensus 292 --S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA-g~tgrq~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 292 --SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA-GTTGRQKHRTQAVFNHTEDYVL 368 (430)
T ss_pred --cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC-CcccchhhhhhhhhcCccceEE
Confidence 344444443 34 357899999999999999999999999999999865433211 11111 12233433 3555
Q ss_pred Eec-CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 294 SGS-ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 294 ~~~-~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.-. ..+.+.-||.++..... ....+|++++..+.-+|.++ .++|||.|-.+|+|
T Consensus 369 ~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~HSP~~p-------~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIVHSPVEP-------AFMTCSDDFRARFW 423 (430)
T ss_pred ccccccCceeeccccchhhhh--hcccCCCCCceEEEeCCCCC-------ceeeecccceeeee
Confidence 444 46789999999975333 33468999999999999999 99999999999999
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=204.82 Aligned_cols=264 Identities=15% Similarity=0.197 Sum_probs=217.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~~ 101 (357)
|...|.+++|+ |..|++|+.| ++.+|++ +..+....+.. .+|.+.|-.++|+|. .+++++.|.+|++||++.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~-e~~r~~~~~~~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNL-ERDRFRKELVY-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEe-cchhhhhhhcc-cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 99999999999 9999999999 9999999 66555444332 239999999999964 499999999999999999
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
++....+.. ...=.-+.|+| ++++.++.|..|...|.++.+.....
T Consensus 97 ~k~~~~i~~-------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~- 144 (313)
T KOG1407|consen 97 GKCTARIET-------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE- 144 (313)
T ss_pred CcEEEEeec-------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-
Confidence 987655542 22334567777 99999999999999999998887776
Q ss_pred ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
.....+..++|+.++ .++.....|.|.|.... ..+++..+..|.....|+.|+|+|+++|+|+.|..+
T Consensus 145 -~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp----------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 145 -QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP----------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred -cccceeeeeeecCCCCEEEEecCCceEEEEecc----------ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 566678888888666 55555667999998876 677889999999999999999999999999999999
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
.+||++..- ..+.+..+.-+|..++|+- ++||+|++|..|-|=++++| ..+..++ +.++-..++|+|...
T Consensus 214 SLWD~~ELi---C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI~-~~~~t~tVAWHPk~~- 285 (313)
T KOG1407|consen 214 SLWDVDELI---CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEIP-CEGPTFTVAWHPKRP- 285 (313)
T ss_pred eccChhHhh---hheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEee-ccCCceeEEecCCCc-
Confidence 999998554 4556667888998887765 49999999999999999998 4444444 688999999999998
Q ss_pred CCCCeEEEEEcCCC
Q 038568 337 ASNGIVSIGSGSLN 350 (357)
Q Consensus 337 ~~~~~~~l~s~~~d 350 (357)
+||-+++|
T Consensus 286 ------LLAyA~dd 293 (313)
T KOG1407|consen 286 ------LLAYACDD 293 (313)
T ss_pred ------eeeEEecC
Confidence 88777654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=218.87 Aligned_cols=272 Identities=19% Similarity=0.336 Sum_probs=211.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-----cceEEEeeCC-ceEEEeccCCccc----cceeccccCCCCceEEEEEe
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-----NSLLYAASLN-EINVFDLISDYSH----VDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~----~~~~~~~~~~~~~v~~l~~~ 81 (357)
..+++..++.+ |.++|.++++- ...|++|+.| ++++|.+ +.++. ++..+| |...|-+++..
T Consensus 132 ~~Gk~~~~~~G-----ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~-~~~~~~~~~~~~~~G---Hk~~V~sVsv~ 202 (423)
T KOG0313|consen 132 LKGKSIKTIVG-----HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW-NVGENKVKALKVCRG---HKRSVDSVSVD 202 (423)
T ss_pred cCCceEEEEec-----CCcceeeeEEEecCCccceEEEecCCceEEEEEe-cCchhhhhHHhHhcc---cccceeEEEec
Confidence 36778888886 99999999886 3469999999 9999999 55443 223335 99999999999
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSV 158 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 158 (357)
+++ +++|+.|.+|++|+...... ..+......+... .........+.....+.+|..+|.++.|.+ ..++++
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~----~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~ 277 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKK----QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSV 277 (423)
T ss_pred CCCCeEEeecccceeeecccCCCcc-ccccccchhhhhh----hhhhhcccccCceEEecccccceeeEEEcCCCceEee
Confidence 887 99999999999999433211 1111111100000 000000111222244569999999999999 999999
Q ss_pred ecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 159 SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
+.|.+|+.||+.++..+.++ .....++++.++|.. +|++|+.|..+++||.+ .+ ........+.+|.+.|
T Consensus 278 SwDHTIk~WDletg~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR------~~-~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR------TG-DGSVVSQSLIGHKNWV 348 (423)
T ss_pred cccceEEEEEeecccceeee--ecCcceeEeecccccceeeecCCCCceeecCCC------CC-CCceeEEeeecchhhh
Confidence 99999999999999998887 567789999999977 69999999999999998 33 2344567888999999
Q ss_pred eEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCC
Q 038568 238 NALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 238 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~ 308 (357)
.++.|+| +...|++|+.|+++++||+++... ++..+.+|...|.++.|... +|++|+.|+.|+++.-..
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 9999999 556889999999999999998763 45577789999999999877 999999999999987653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=227.22 Aligned_cols=293 Identities=16% Similarity=0.245 Sum_probs=218.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-cccceeccccC-CCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-SHVDTFSNDLS-SSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-~~~~~~~~~~~-~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|+..|.++++. |..|++|+.| .|++||+ ... ...+.|+...+ ....|.+++|++.+ |++.+.....+|+|-.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf-~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDF-QGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEec-ccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 99999999999 9999999999 9999999 542 12222322111 35679999999976 7777778899999987
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
..+...+.+--.-+.+. ..-.+|...++|.+|+| ..+++++.||++++||++..+....
T Consensus 245 G~~~~e~~KGDQYI~Dm------------------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDM------------------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred Cceeeeeeccchhhhhh------------------hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 66554444322111111 11249999999999999 8899999999999999987553332
Q ss_pred -cc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEEEecCCCEE
Q 038568 178 -VN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNGDGSLL 249 (357)
Q Consensus 178 -~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 249 (357)
+. .+..-+++.++|++++ .|++|+.||.|.+|+.... . .......-..|.. .|+|+.|+++|++|
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~------~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR------T-VRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc------c-cccceEeeeccCCCCceeEEEeccccchh
Confidence 21 2344578899999999 5999999999999997521 1 1222333456766 89999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC------CCeEEEeeCCCCcceeeeeeecCC
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA------DRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
++-+.|+++++||++..+.......-.....+-+.+.|+|+ +|++|.. .|.+.+||..+- ..++.+.-.
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~ 456 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDIS 456 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCC
Confidence 99999999999999977653332222222334456677776 7888764 478999999874 667777777
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
...|..+.|+|.-+ .|..|+.||.+++|
T Consensus 457 ~aSvv~~~WhpkLN-------Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 457 TASVVRCLWHPKLN-------QIFAGSGDGTAHVY 484 (641)
T ss_pred CceEEEEeecchhh-------heeeecCCCceEEE
Confidence 88899999999988 88888899999886
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=222.87 Aligned_cols=269 Identities=19% Similarity=0.272 Sum_probs=219.9
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|.+.|.|++=+ -..+|+|+.| .|+|||+ ....+..+|+. |.+.|..|++....+++++.|.+|+.|.++..
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~A---H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKA---HEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeec---ccCceeeEEecccceEEecCCcceeeeeccCC-
Confidence 99999999998 3579999999 9999999 88899999998 99999999999988999999999999998763
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
....+ .....+..+.-+. +.++|++. .|.|||.....++..+ .-
T Consensus 140 p~~ti-------------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm-sw 185 (433)
T KOG0268|consen 140 PLHTI-------------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM-SW 185 (433)
T ss_pred cceee-------------------------------eccccccccccccccccccccCc--eeeecccccCCcccee-ec
Confidence 11111 2234555666555 67888876 5999999988899988 56
Q ss_pred ccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
....|.++.|+|.. .|++++.|+.|.+||++ + ..++.... ....-+.++|+|.+-.+++|++|..++
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R------~----~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLR------Q----ASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecc------c----CCccceee-eeccccceecCccccceeeccccccce
Confidence 66789999999977 48888899999999999 2 33333322 234457899999888899999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
.||++.... +.....+|..+|+.++|+|. -+++|+.|.+|+||.++.+.......+ ..-..|.++.|+.|.+
T Consensus 255 ~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk-- 328 (433)
T KOG0268|consen 255 TYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK-- 328 (433)
T ss_pred ehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc--
Confidence 999997665 56677899999999999986 999999999999999987643222221 1235699999999999
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
++++||+|+.||+|.
T Consensus 329 -----yi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 329 -----YIISGSDDGNVRLWK 343 (433)
T ss_pred -----EEEecCCCcceeeee
Confidence 999999999999993
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=239.11 Aligned_cols=264 Identities=19% Similarity=0.290 Sum_probs=202.1
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeee--------------------eecC-cc---------ccc
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLV--------------------STLP-TV---------KDR 117 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~-~~---------~~~ 117 (357)
.|.+.|.++.|++|+ ||+||.|+.|+||.+...+....- .... .. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 499999999999998 999999999999998662210000 0000 00 000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 195 (357)
......+.....+.......+.+|.+.|.++.|+. ++|++++.|.+|++|++...+|+..| .|...|+|++|+|-.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccCC
Confidence 00122233344455555577899999999999999 99999999999999999999999998 899999999999954
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
+|++|+-|+.||||++. .. .+........-|++++|.|||++.++|+.+|.+++|+....+.......
T Consensus 423 ryFiSGSLD~KvRiWsI~----------d~-~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSIS----------DK-KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred CcEeecccccceEEeecC----------cC-eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 79999999999999997 23 3333444558899999999999999999999999999986543222211
Q ss_pred c------cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEE
Q 038568 275 L------WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 275 ~------~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~ 343 (357)
. ..|. .|+.+.|.+. .+++.+.|..|||+|.++. .++..++|+.. .-....|+.|++ +
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk-------~ 560 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGK-------H 560 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCC-------E
Confidence 1 1133 7999988753 6888899999999999765 55666665443 345678999998 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
|+++++|..|++|+
T Consensus 561 IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 561 IVSASEDSWVYIWK 574 (712)
T ss_pred EEEeecCceEEEEe
Confidence 99999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=238.48 Aligned_cols=237 Identities=29% Similarity=0.487 Sum_probs=200.6
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
+...|.++.|++++ +++++.|+.+++|+....+. .....+ .+|...|.++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l---------------------------~~h~~~v~~~ 209 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL---------------------------SGHTRGVSDV 209 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc---------------------------cccccceeee
Confidence 47899999999998 99999999999999965542 111111 2899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEc-CcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNA-SNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+|+| .++++++.|++|++||+ ..+..+.++ .+|...|++++|+|++ .+++|+.|++|++||++ ..
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~----------~~ 278 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR----------TG 278 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc----------CC
Confidence 9999 79999999999999999 555788888 8999999999999999 69999999999999998 47
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc--ceEEEeecCc--eEEEecCCCe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG--ALLCLINVGD--LLASGSADRT 300 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~--~l~~~~~dg~ 300 (357)
++...+.+|...|++++|++++++|++++.|+.|++||+.++... ....+.++.. ++.++.|+++ +++++..|+.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 889999999999999999999999999999999999999988732 2334444444 4888888876 9999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCce---EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPV---KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++||+..+ .......+|...+ .+...++.+. ++++|+.|+.|++||
T Consensus 358 ~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 358 LKLWDLRSG---KSVGTYTGHSNLVRCIFSPTLSTGGK-------LIYSGSEDGSVYVWD 407 (456)
T ss_pred EEEEEccCC---cceeeecccCCcceeEecccccCCCC-------eEEEEeCCceEEEEe
Confidence 999999987 6667777777653 3334455666 999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=193.46 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=231.8
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-----------c-ccceeccccCCCC
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-----------S-HVDTFSNDLSSSG 73 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-----------~-~~~~~~~~~~~~~ 73 (357)
.+.+.++++.+|+ ...+|.+++|. |.+.|+|+.. +.+|-.. ... + +...++....|.+
T Consensus 18 ~~k~~f~~i~~l~------dsqairav~fhp~g~lyavgsnskt~ric~y-p~l~~~r~~hea~~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 18 KEKKHFEAINILE------DSQAIRAVAFHPAGGLYAVGSNSKTFRICAY-PALIDLRHAHEAAKQPPSVLCKRNKHHKG 90 (350)
T ss_pred ccccceEEEEEec------chhheeeEEecCCCceEEeccCCceEEEEcc-ccccCcccccccccCCCeEEeeeccccCc
Confidence 4567788899998 78899999999 9999999988 8887654 220 1 1122222334899
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.|.|.+|+|.+ |++|+.|++|++..++.......-.. -.+.-|.+.|.+++|.
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~d-------------------------le~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHD-------------------------LEFNMHDGTIRDLAFL 145 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcc-------------------------eeeeecCCceeeeEEe
Confidence 99999999998 99999999999988765432111110 1223789999999997
Q ss_pred c------CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccce
Q 038568 152 Q------GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 152 ~------~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
. ..|++++ .|..|.+-|..+++....+ .+|.+.|.++---..-.+++|+.|.+|++||++. .
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilalyswn~~m~~sgsqdktirfwdlrv----------~ 214 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV----------N 214 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEEEecCcEEEccCCCceEEEEeeec----------c
Confidence 6 4566554 4778888899999999999 8999999888655555799999999999999982 2
Q ss_pred eeeeEee----c---cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe
Q 038568 225 MLVTTLV----K---HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG 295 (357)
Q Consensus 225 ~~~~~~~----~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~ 295 (357)
..+..+. . ..+.|.+++..|.|++|++|-.|....+||++.++ .++.+..|...|.|+.|+|. +++++
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---eeeeeCCCccceeEEEeCCCceEEEEe
Confidence 2333222 1 23679999999999999999999999999999887 56778889999999999998 99999
Q ss_pred cCCCeEEEeeCCCCc-ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKEN-CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|..|++-|+...- ..-++.....|.+.+..+.|+|..- .+++.+.|.++.+|
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-------sfisssadkt~tlw 346 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-------SFISSSADKTATLW 346 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc-------eeeeccCcceEEEe
Confidence 999999999987421 0123445567899999999999987 89999999999999
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=203.82 Aligned_cols=238 Identities=19% Similarity=0.351 Sum_probs=200.8
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
..+.+.. ++++|.++.|+-++ .++++.|.+|++|++..+..++...
T Consensus 9 r~~~l~~---~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------------------- 56 (307)
T KOG0316|consen 9 RLSILDC---AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------------------- 56 (307)
T ss_pred hceeecc---cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-----------------------------
Confidence 4455666 99999999999876 8999999999999999886655443
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|...|.+++.+. ..+++|+.|..+.+||+++|+.+..+ .+|...|+.+.|+.+. .+++|+.|.++++||.+
T Consensus 57 -ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR--- 131 (307)
T KOG0316|consen 57 -GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR--- 131 (307)
T ss_pred -CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcc---
Confidence 8889999988777 88999999999999999999999999 9999999999999888 59999999999999988
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
....++++.+......|.++..+ +..+++|+.||+++.||++.++. .....+| +|+++.++++ ..+
T Consensus 132 -----S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l---~sDy~g~--pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 132 -----SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL---SSDYFGH--PITSVSFSKDGNCSL 199 (307)
T ss_pred -----cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee---ehhhcCC--cceeEEecCCCCEEE
Confidence 33567788888888899999886 56899999999999999998873 3344444 5666666655 899
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEE--EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS--LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++.|+++++.|-+++ +.+...++|...=.. .++..... .+++|+.||.|.+||
T Consensus 200 a~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsdt-------hV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSDT-------HVFSGSEDGKVYFWD 255 (307)
T ss_pred Eeeccceeeecccchh---HHHHHhcccccceeeeeeeecccce-------eEEeccCCceEEEEE
Confidence 9999999999999998 778888899875443 34555555 899999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=239.65 Aligned_cols=248 Identities=25% Similarity=0.391 Sum_probs=218.2
Q ss_pred cccceeccc-ccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceE
Q 038568 11 AFKHHCIAS-LKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIF 86 (357)
Q Consensus 11 ~~~~~~~~~-~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 86 (357)
...++.+.. +.+ |.+.|++++|. +++|++|+.| ++++||. .+++...++.+ |...|.++...+..++
T Consensus 235 ~~~~~~i~~~l~G-----H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~g---h~stv~~~~~~~~~~~ 305 (537)
T KOG0274|consen 235 LNNGYLILTRLVG-----HFGGVWGLAFPSGGDKLVSGSTDKTERVWDC-STGECTHSLQG---HTSSVRCLTIDPFLLV 305 (537)
T ss_pred cccceEEEeeccC-----CCCCceeEEEecCCCEEEEEecCCcEEeEec-CCCcEEEEecC---CCceEEEEEccCceEe
Confidence 334444444 665 99999999999 9999999999 9999999 99999999998 9999999999999999
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKI 166 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 166 (357)
+|+.|.+|++|++.++..+..+. +|..+|.++..+..++++|+.|++|++
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~------------------------------~h~~~V~~v~~~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLR------------------------------GHTGPVNCVQLDEPLLVSGSYDGTVKV 355 (537)
T ss_pred eccCCceEEEEeccCcceEEEec------------------------------cccccEEEEEecCCEEEEEecCceEEE
Confidence 99999999999999886554443 699999999999999999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccce-eeeeEeeccccceeEEEEecC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRH-MLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 245 (357)
||+.+++++..+ .+|...|.++.+.+..++++|+.|+.|++||++ .. +++..+.+|..-+..+.+ .
T Consensus 356 W~~~~~~cl~sl-~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~----------~~~~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 356 WDPRTGKCLKSL-SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR----------TKRKCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred EEhhhceeeeee-cCCcceEEEEEecCcceEEeeeeccceEeecCC----------chhhhhhhhcCCccccccccc--c
Confidence 999999999999 889999999988876689999999999999998 33 788889999998877765 4
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCceEEEecCCCeEEEeeCCCCccee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
+++|++++.|++|++||..+++.. ..+.+ |...+.++.+....+++++.||.+++||+++++..+
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~---~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECL---RTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cceeEeccccccEEEeecccCcee---eeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 679999999999999999998854 44445 678899888886799999999999999999985443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=239.03 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=184.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC----------------------------------------------
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD---------------------------------------------- 58 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~---------------------------------------------- 58 (357)
|.++|+++.|+ |+|||+||.| .|+||.+.+.
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 99999999999 9999999999 9999998440
Q ss_pred -------------ccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecC
Q 038568 59 -------------YSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 59 -------------~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.++++.|. +|.+.|.+|.|+.++ |++++.|.+|++|++...+++..+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~---GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F---------------- 406 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFK---GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF---------------- 406 (712)
T ss_pred ccccCCCccccccccchhhhh---ccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----------------
Confidence 11233444 499999999999888 999999999999999977655554
Q ss_pred CCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEE
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTG 200 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~ 200 (357)
.|.+-|+|++|+| +++++|+-||.|+||++...+.+.- .....-|++++|.|+|. .++|
T Consensus 407 ---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 407 ---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee--hhhhhhheeEEeccCCceEEEE
Confidence 7999999999999 9999999999999999977665543 35558899999999994 8999
Q ss_pred eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCc
Q 038568 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT 279 (357)
Q Consensus 201 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 279 (357)
+.+|.+++|+....+......-.....+. ..|. .|+.+.|.| +...+++.+.|..|||||.++...+..++.+..-.
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKK-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCcc-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 99999999998732211111000000011 1133 799999998 34468888899999999998766443333332222
Q ss_pred cce-EEEeecCceEEEecCCCeEEEeeCC
Q 038568 280 GAL-LCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 280 ~~v-~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
..+ .++..++++|+++++|..|++|+..
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 223 3344567799999999999999973
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=217.20 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=230.6
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~ 104 (357)
..|+++... .+.++||+.| .+.++|. ...+.+..|.| |...|+.+.|+|+. +++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~-~s~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDK-PSNQILATLKG---HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEec-chhhhhhhccC---cceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 357777776 4899999999 9999999 99999999999 99999999999987 99999999999999876653
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc-
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA- 181 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 181 (357)
..... .|..+|+.+..+| .||++++.||+..+.|++++..+......
T Consensus 296 ~~~~~------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 296 PTSSR------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred ccccc------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 33222 8899999999999 99999999999999999999988877332
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
..-.+++.+|+|||. |.+|..|+.|++||+. .......+.+|.++|..++|+.+|-+|++++.|+.|++
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk----------s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK----------SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCCceEEEEEcC----------CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 345689999999995 8899999999999998 44567889999999999999999999999999999999
Q ss_pred EecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
||++..+....+.... ...+.++.|+ +.+|+.++.|=.|++++-.+. .+..+..+..|.+..+++.|.....
T Consensus 416 wDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq--- 489 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQ--- 489 (506)
T ss_pred EEehhhcccceeeccc--cccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhcccccceeeecccce---
Confidence 9999877554443322 2256555554 569999988877777765543 4788888999999999999999988
Q ss_pred CCeEEEEEcCCCCeEEec
Q 038568 339 NGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 339 ~~~~~l~s~~~dg~v~~w 356 (357)
+++++|.|..++++
T Consensus 490 ----~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 490 ----YLASTSMDAILRLY 503 (506)
T ss_pred ----EEeeccchhheEEe
Confidence 99999999998886
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=231.42 Aligned_cols=248 Identities=19% Similarity=0.315 Sum_probs=214.7
Q ss_pred ccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK 135 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (357)
.+.+.++.+ |...|+++.|.|. . |++++.|+.|+||++.... .++++
T Consensus 204 kk~~~~~~g---H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrt------------------------- 253 (503)
T KOG0282|consen 204 KKLSHNLSG---HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRT------------------------- 253 (503)
T ss_pred HhheeeccC---CccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehh-------------------------
Confidence 456777887 9999999999994 3 9999999999999998733 33433
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEc
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWER 211 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~ 211 (357)
+.+|..+|.+++|++ ..+++++.|+.|++||+++|+++..+ .....++|+.++|++ .+++|+.|+.|+.||+
T Consensus 254 --f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 254 --FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred --hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 349999999999999 89999999999999999999999998 566788999999998 5999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCce
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDL 291 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 291 (357)
+ ..+.++++..|-+.|..+.|-++|+.+++.+.|+.++||+.+.+-.+..+.....|..+...+.+.+.+
T Consensus 330 R----------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 330 R----------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred c----------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 9 566788888899999999999999999999999999999999887666666666677777777777789
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++-+.|+.|.++.+...-.......+.+|.. --..+.|+||++ +|++|+.||.+.+||
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-------~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-------TLCSGDSDGKVNFWD 460 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-------eEEeecCCccEEEee
Confidence 99999999999999876544455566778864 356789999999 999999999999997
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=211.57 Aligned_cols=244 Identities=18% Similarity=0.311 Sum_probs=209.5
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+.=+-+|.+ |+++|+....+ ....|+++.| +-+|||. -++..++.|+ |..-|.+++|+.|. |++|
T Consensus 49 gdwigtfeg-----hkgavw~~~l~~na~~aasaaadftakvw~a-~tgdelhsf~----hkhivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 49 GDWIGTFEG-----HKGAVWSATLNKNATRAASAAADFTAKVWDA-VTGDELHSFE----HKHIVKAVAFSQDSNYLLTG 118 (334)
T ss_pred CCcEEeeec-----cCcceeeeecCchhhhhhhhcccchhhhhhh-hhhhhhhhhh----hhheeeeEEecccchhhhcc
Confidence 334556665 99999999998 5677888999 9999999 9999999998 99999999999876 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.+..++|||++..+.. ... +.+|.+.|..+.|.. +.+++.+.|++|++
T Consensus 119 g~ekllrvfdln~p~Ap--p~E---------------------------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKAP--PKE---------------------------ISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred chHHHhhhhhccCCCCC--chh---------------------------hcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 99999999999876532 222 238999999999988 88999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
||.+++..++++ ..+.+|+++.++++|.+++-...+.|.+||.. ...++..+. ....|.+.+.+|+.
T Consensus 170 WD~rTgt~v~sL--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak----------sf~~lKs~k-~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 170 WDHRTGTEVQSL--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK----------SFGLLKSYK-MPCNVESASLHPKK 236 (334)
T ss_pred EEeccCcEEEEE--ecCCCCcceeeccCCCEEEEecCceeEEeccc----------cccceeecc-CccccccccccCCC
Confidence 999999999998 67789999999999999999999999999987 333444433 34568899999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~ 311 (357)
..+++|++|..++.||..++..+... ..+|.++|.|+.|+|+ ..++|+.||+|++|....++.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999865432 4789999999999988 889999999999999987643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=252.27 Aligned_cols=264 Identities=18% Similarity=0.266 Sum_probs=205.2
Q ss_pred ceEEEeccCCccccceecc--ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecC
Q 038568 49 EINVFDLISDYSHVDTFSN--DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.+++|+. ........+.. ...|...|.+++|+|++ |++|+.|+.|++|++............+
T Consensus 459 l~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~------------ 525 (793)
T PLN00181 459 LCKYLSF-SKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP------------ 525 (793)
T ss_pred hhhhhcc-cceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc------------
Confidence 5777777 54443322221 11289999999999987 9999999999999976421100000000
Q ss_pred CCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CC-eEEE
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYT 199 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~ 199 (357)
.....+...+.+++|++ .+|++++.||+|++||+.+++.+..+ ..|...|.+++|+| ++ +|++
T Consensus 526 -----------~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 526 -----------VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred -----------eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEE
Confidence 00013346789999987 78999999999999999998888888 78999999999997 55 6999
Q ss_pred EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCC
Q 038568 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH 278 (357)
Q Consensus 200 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (357)
|+.|+.|++||++ ....+..+.. ...+.++.|++ ++.+|++|+.||.|++||+++... ....+.+|
T Consensus 594 gs~Dg~v~iWd~~----------~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h 660 (793)
T PLN00181 594 GSDDGSVKLWSIN----------QGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGH 660 (793)
T ss_pred EcCCCEEEEEECC----------CCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCC
Confidence 9999999999997 2334444543 36789999964 789999999999999999987653 23455689
Q ss_pred ccceEEEeecC-ceEEEecCCCeEEEeeCCCCc---ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 279 TGALLCLINVG-DLLASGSADRTVRIWQRGKEN---CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 279 ~~~v~~~~~~~-~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
...|.++.|.+ .+|++++.|+.|++||++.+. ...++..+.+|...+..++|+|++. +|++|+.||.|+
T Consensus 661 ~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-------~lasgs~D~~v~ 733 (793)
T PLN00181 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-------YIATGSETNEVF 733 (793)
T ss_pred CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-------EEEEEeCCCEEE
Confidence 99999999864 499999999999999997532 2356778899999999999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+|+
T Consensus 734 iw~ 736 (793)
T PLN00181 734 VYH 736 (793)
T ss_pred EEE
Confidence 996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=210.23 Aligned_cols=317 Identities=19% Similarity=0.266 Sum_probs=236.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..++++.+.+ |++.|+.++.. ...+.+++.| +.+||.+ +++.++..+.+ |.+.|+++.|++.+ +++
T Consensus 137 ~~~lvre~~G-----HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~-Esg~CL~~Y~G---H~GSVNsikfh~s~~L~lT 207 (481)
T KOG0300|consen 137 KFRLVRELEG-----HKDGIWHVAADSTQPICGTASADHTARIWSL-ESGACLATYTG---HTGSVNSIKFHNSGLLLLT 207 (481)
T ss_pred eEeehhhhcc-----cccceeeehhhcCCcceeecccccceeEEee-ccccceeeecc---cccceeeEEeccccceEEE
Confidence 4555666664 99999999988 6789999999 9999999 99999999999 99999999999987 889
Q ss_pred eecCCeEEEEecC----Cccce--eeeeecCccccceeeeecCCCeEEEecc----cccccccccccEEEEEEec--CeE
Q 038568 88 AHQDCKIRVWKIT----ASRQH--QLVSTLPTVKDRLIRSVLPNNYVTVRRH----KKRLWLEHWDAVSDLVVKQ--GLM 155 (357)
Q Consensus 88 ~~~d~~i~vwd~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~--~~l 155 (357)
++.|++..||... .++.. ............-......+......++ +...+.+|...|.+..|.. +.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 9999999999832 11100 0000000000000000000000001111 1133468999999999988 899
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
++++.|.+..+||+++++.+..+ .+|....+.++-+|..+ +++.+.|.+.++||++ .....+..+++|.
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR---------eaI~sV~VFQGHt 357 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR---------EAIQSVAVFQGHT 357 (481)
T ss_pred eeeeccccceeeeeccCceeccc-cCcchhccccccCCcceEEEEeccCceeEeccch---------hhcceeeeecccc
Confidence 99999999999999999999999 89999999999999885 7889999999999998 3455678899999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcce
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
..|+++.|..+. .+++|+.|.+|+|||+++.+... .++. -..++..++.+ ...|+.--++..|++||++.....
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl--ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL--ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeeccccCcc--eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 999999998764 58999999999999999776532 2222 23445555444 448888889999999999865322
Q ss_pred ee-eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RC-MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ...-++|...|+|++|..+.+. .-|+++|.|..+.-|+
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~-----cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPA-----CNLFTCGFDRMVAGWK 474 (481)
T ss_pred cCCcccccccceeeeeeeccccCcc-----cccccccccceeeeeE
Confidence 21 1245689999999999876541 1488999999998874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=226.41 Aligned_cols=273 Identities=23% Similarity=0.389 Sum_probs=229.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccc--eeccccCCCCceEE-EEEec-Cc-
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVD--TFSNDLSSSGSVKS-ITFHI-TK- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~-l~~~~-~~- 84 (357)
+.++..+.+.+ |+..|..+++. +..++++|.| ++++|+- ...+.+. .+.+ |.+-|.. ++|.+ ++
T Consensus 2 ~~Y~ls~~l~g-----H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~-~~~~~l~~~~~~~---~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 2 PQYKLSHELEG-----HKSDVRAVAVTDGVCIISGSRDGTVKVWAK-KGKQYLETHAFEG---PKGFIANSICYAESDKG 72 (745)
T ss_pred CcceeEEEecc-----CccchheeEecCCeEEeecCCCCceeeeec-cCcccccceeccc---CcceeeccceeccccCc
Confidence 34667778886 99999999998 7889999999 9999998 5544443 4555 7777766 88875 32
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDR 162 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg 162 (357)
+++|+.|.++.+|.+.+......+ .+|...|.++.... ..+++||.|.
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~L------------------------------kgH~snVC~ls~~~~~~~iSgSWD~ 122 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTL------------------------------KGHKSNVCSLSIGEDGTLISGSWDS 122 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhh------------------------------hccccceeeeecCCcCceEeccccc
Confidence 999999999999999887655443 39999999999777 6799999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
++++|-. +++...+ .+|...|.++...|++.+++|+.|.+|++|.- .+.+..+.+|...|..+++
T Consensus 123 TakvW~~--~~l~~~l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~------------~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 123 TAKVWRI--GELVYSL-QGHTASVWAVASLPENTYVTGSADKTIKLWKG------------GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred ceEEecc--hhhhccc-CCcchheeeeeecCCCcEEeccCcceeeeccC------------CchhhhhccchhheeeeEE
Confidence 9999975 5666677 89999999999999999999999999999984 4678889999999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecC
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEG 320 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 320 (357)
-+++ .+++++.||.|+.|++. ++ .+....+|...+.+++.. ...++++++|+++++|+.. .+.+.+.-
T Consensus 188 l~~~-~flScsNDg~Ir~w~~~-ge---~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~l 257 (745)
T KOG0301|consen 188 LDDS-HFLSCSNDGSIRLWDLD-GE---VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITL 257 (745)
T ss_pred ecCC-CeEeecCCceEEEEecc-Cc---eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEec
Confidence 9875 58899999999999994 55 556778999999988843 3399999999999999987 45666665
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
....|+++.+-+++. +++|+.||.||||
T Consensus 258 PttsiWsa~~L~NgD--------Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGD--------IVVGGSDGRVRVF 285 (745)
T ss_pred CccceEEEEEeeCCC--------EEEeccCceEEEE
Confidence 666899999999996 8889999999998
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=203.70 Aligned_cols=259 Identities=17% Similarity=0.207 Sum_probs=203.7
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccc-eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVD-TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
-.+.|.+|+|| ..+++++|.| +||+|++.+++..+- ... .|.++|.+++|+.++ +++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~---~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ---SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh---ccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 77899999999 6777789999 999999944344433 233 399999999999987 9999999999999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
+++... +. .|..+|..+.|-+ ..|++||.|.+|+.||.+...++.
T Consensus 103 S~Q~~~-v~------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 103 SGQVSQ-VA------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred CCCeee-ee------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 985432 22 8999999999998 478999999999999999988888
Q ss_pred hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC
Q 038568 177 SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
++ .....+.++..-.. .++++..++.|.+|+++.... +.........-.+.|++..++....+.|+-+|
T Consensus 152 t~--~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~t--------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 152 TL--QLPERVYAADVLYP-MAVVATAERHIAVYNLENPPT--------EFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ee--eccceeeehhccCc-eeEEEecCCcEEEEEcCCCcc--------hhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 87 55667777665322 588888999999999972111 11111112344578999989888889999999
Q ss_pred eEEEEecccCCceeeeeeccCCc---------cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 257 WIVVWERERDHRMVFAEALWGHT---------GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
.+.|..++.+.+ ..-..++.|. .+|..++|+|. .|+++|.||+..+||-... ..+.....|..+|
T Consensus 221 rv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 221 RVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred eEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 999999987533 2223344444 35678899987 8999999999999998765 5567778899999
Q ss_pred EEEEEeeCCC
Q 038568 326 KSLVAISSSS 335 (357)
Q Consensus 326 ~~~~~~~~~~ 335 (357)
++.+|+.+|.
T Consensus 297 tcc~fn~~G~ 306 (347)
T KOG0647|consen 297 TCCSFNRNGS 306 (347)
T ss_pred ceeEecCCCC
Confidence 9999999998
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=216.78 Aligned_cols=269 Identities=23% Similarity=0.341 Sum_probs=222.8
Q ss_pred CccceeEEEEe---cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH---NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.+.|.+++|+ ..-+|+.+.-.+.||+. .+....+++.. ....|.++.|..|+ |++|...|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~sr---Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSR---FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEec-chhhhhhhHHh---hccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 45789999999 45666666558999999 88888888877 88999999999988 888888999999996653
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
..... +.+|+.++..+.|+| ..+++|+.|+.+++||+.+......+
T Consensus 101 ~iLR~------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l- 149 (487)
T KOG0310|consen 101 VILRQ------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL- 149 (487)
T ss_pred HHHHH------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-
Confidence 22222 238999999999999 78899999999999999998875566
Q ss_pred ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 180 KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.+|.+.|.|.+++|.. .+++|+.||.|++||.+. ....+.++ .|..+|..+.+-|.|..+++++. +.
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~---------~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS---------LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEecc---------CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 8999999999999976 599999999999999981 11344444 48999999999999999998875 46
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+|||+.++.+ .......|...|+|+.+..+ .|++|+-|+.+++||+.+ ++.+..+. -.++|.+++.+|++.
T Consensus 219 vkVWDl~~G~q--ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 219 VKVWDLTTGGQ--LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ 292 (487)
T ss_pred EEEEEecCCce--ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc
Confidence 99999997765 33444559999999999874 999999999999999776 46666665 468999999999988
Q ss_pred CCCCCeEEEEEcCCCCeEEe
Q 038568 336 SASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~ 355 (357)
.++.|..||.+.+
T Consensus 293 -------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 293 -------TVVIGMSNGLVSI 305 (487)
T ss_pred -------eEEEecccceeee
Confidence 8999999997743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=218.68 Aligned_cols=238 Identities=28% Similarity=0.503 Sum_probs=201.3
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+++.+ |..+|++++|+|++ |++++.||.+++|++.+++...... .
T Consensus 3 ~~~~~---h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~------------------------------~ 49 (289)
T cd00200 3 RTLKG---HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK------------------------------G 49 (289)
T ss_pred hHhcc---cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe------------------------------c
Confidence 45566 99999999999975 8899999999999998775332222 6
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
|...+..+.|.+ +.+++++.||.|++||+.+++.+..+ ..+...+.++.|++++. +++++.++.+++||++
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 123 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE----- 123 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-----
Confidence 778889999999 58999999999999999988777777 67888999999999875 6666669999999997
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG 295 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~ 295 (357)
.......+..|...+.+++|+|++.++++++.|+.|++||+++++. ...+..|...+.++.++++ .++++
T Consensus 124 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 124 -----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred -----CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEe
Confidence 3455666668889999999999988999888899999999987664 3344578888999999887 88999
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|+.|++||++++ +.+..+..|..++.++.|+|++. ++++++.||.|++||
T Consensus 196 ~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~i~i~~ 247 (289)
T cd00200 196 SSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGY-------LLASGSEDGTIRVWD 247 (289)
T ss_pred cCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCc-------EEEEEcCCCcEEEEE
Confidence 99999999999986 55666778888999999999977 888888899999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=226.11 Aligned_cols=259 Identities=15% Similarity=0.251 Sum_probs=189.0
Q ss_pred EEEecceEEE------eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccc
Q 038568 35 LAVHNSLLYA------ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 35 ~~~s~~~l~t------~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~ 104 (357)
++.+++++|. |+.+ .|++|+. .....+..+.+ |.++|.+++|+|+ . |++|+.|++|++||+.++..
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~-~r~~~v~~L~g---H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQ-MRKPPVIKLKG---HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeec-CCCceEEEEcC---CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 3444555553 4456 8999998 66677778887 9999999999986 3 99999999999999976432
Q ss_pred -eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 105 -HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
...+.. ....+.+|...|.+++|+| ..+++++.|++|++||+++++.+..+
T Consensus 110 ~~~~i~~-----------------------p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i-- 164 (568)
T PTZ00420 110 SVKEIKD-----------------------PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI-- 164 (568)
T ss_pred ccccccc-----------------------ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--
Confidence 110000 0012238899999999999 35679999999999999998877666
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE-----EEEecCCCEEEEEec
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA-----LALNGDGSLLFSGGC 254 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~ 254 (357)
.+...|.+++|+|+| .|++++.|+.|++||++ ....+..+.+|.+.+.. ..|++++.+|++++.
T Consensus 165 ~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R----------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 165 NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR----------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC----------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 356789999999999 57888899999999998 44556677888876543 334588889999887
Q ss_pred CC----eEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 255 DR----WIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 255 dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
|+ +|++||++..........+..+.+.+..+... +.++++|+.|+.|++|++..+. ...+.... +..++.++
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~ 312 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSF 312 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccce
Confidence 74 79999999644332333333344443333222 3388999999999999998763 33344333 67889999
Q ss_pred EEeeCC
Q 038568 329 VAISSS 334 (357)
Q Consensus 329 ~~~~~~ 334 (357)
+|.|..
T Consensus 313 ~f~Pkr 318 (568)
T PTZ00420 313 GFLPKQ 318 (568)
T ss_pred EEcccc
Confidence 999975
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=200.23 Aligned_cols=264 Identities=18% Similarity=0.224 Sum_probs=210.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~ 103 (357)
-.+.|+++.|+ ++.|++++.| .+++||. ........+. |..++.+++|.++. +++|+.||.|+.+|++++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv-~~~~l~~~~~----~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDV-PANSLKLKFK----HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEec-cchhhhhhee----cCCceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 56789999999 7778888899 9999999 7777777777 99999999999976 9999999999999999876
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
.... ..|..+|.|+.+.+ +.+++|+.|++|++||.+.......+ .
T Consensus 87 ~~~i-------------------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d 133 (323)
T KOG1036|consen 87 EDQI-------------------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--D 133 (323)
T ss_pred ceee-------------------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--c
Confidence 4322 27899999999998 99999999999999999986666665 4
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
....|.++....+ .|++|+.+..+.+||++..+... ...-...+-.+.++++.|++.-.++++-||+|.+=
T Consensus 134 ~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 134 QGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred cCceEEEEeccCC-EEEEeecCceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 4558888887543 79999999999999999433211 11122334568899999988889999999999886
Q ss_pred ecccCCc-eeeeeeccCCc---------cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 262 ERERDHR-MVFAEALWGHT---------GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 262 d~~~~~~-~~~~~~~~~~~---------~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
.++.... ......+..|. .+|.+++|+|- .|+||+.||.|.+||+.+. +.+..+..-...|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 6654411 11122333443 36889999987 8999999999999999987 44555666677899999
Q ss_pred EeeCCCCCCCCeEEEEEcC
Q 038568 330 AISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~ 348 (357)
|+.++. .||.++
T Consensus 282 fs~dG~-------~LAia~ 293 (323)
T KOG1036|consen 282 FSMDGS-------LLAIAS 293 (323)
T ss_pred eccCCC-------eEEEEe
Confidence 999998 888876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=215.59 Aligned_cols=253 Identities=23% Similarity=0.317 Sum_probs=205.2
Q ss_pred cceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-c---------ccceeccccCCCCceEEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-S---------HVDTFSNDLSSSGSVKSI 78 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-~---------~~~~~~~~~~~~~~v~~l 78 (357)
..+..+.+. |.+.|+.+.+- ...+|+++.. .|.|||. ... . +-..+.+ |...-++|
T Consensus 114 ~v~i~~~i~------h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~-tk~~s~~~~~~~~~Pdl~L~g---H~~eg~gl 183 (422)
T KOG0264|consen 114 KVEISQKIN------HDGEVNRARYMPQNPNIVATKTSSGDVYVFDY-TKHPSKPKASGECRPDLRLKG---HEKEGYGL 183 (422)
T ss_pred ceEEEEecc------CCccchhhhhCCCCCcEEEecCCCCCEEEEEe-ccCCCcccccccCCCceEEEe---eccccccc
Confidence 445555666 99999999998 6788888888 9999998 331 1 1225666 88888889
Q ss_pred EEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 79 TFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 79 ~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
+|++.. |++++.|++|++||+.......... ....++.+|...|.+++|++
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-----------------------~p~~~~~~h~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-----------------------DPKTIFSGHEDVVEDVAWHPLHE 240 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccc-----------------------cceEEeecCCcceehhhccccch
Confidence 999864 9999999999999998654321100 01134459999999999999
Q ss_pred CeEEEEecCCeEEEEEcC--cchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNAS--NYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
+++++++.|+.+.|||++ +.++.... .+|...++|++|+|-+ .||+|+.|++|++||+|. ...++.
T Consensus 241 ~lF~sv~dd~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---------L~~~lh 310 (422)
T KOG0264|consen 241 DLFGSVGDDGKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN---------LNKPLH 310 (422)
T ss_pred hhheeecCCCeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechh---------cccCce
Confidence 899999999999999999 45555555 8899999999999966 599999999999999992 345788
Q ss_pred EeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCC-----------ceeeeeeccCCccceEEEeecCc---eEE
Q 038568 229 TLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDH-----------RMVFAEALWGHTGALLCLINVGD---LLA 293 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~---~l~ 293 (357)
.+.+|...|.++.|+| ....|++++.|+.+.|||+..-. ++.++....||...|..++|+|. .|+
T Consensus 311 ~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 311 TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 9999999999999999 45689999999999999996422 23345567799999999999988 899
Q ss_pred EecCCCeEEEeeCCC
Q 038568 294 SGSADRTVRIWQRGK 308 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~ 308 (357)
+.+.|+.+.||+...
T Consensus 391 SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAE 405 (422)
T ss_pred EecCCceEEEeeccc
Confidence 999999999999873
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=200.81 Aligned_cols=265 Identities=18% Similarity=0.297 Sum_probs=202.9
Q ss_pred cccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--- 84 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--- 84 (357)
+..++...+-.+.. |.++|++++.++.++|+||.| +|+|||. .....+..+.. |.+.|+++.|.+..
T Consensus 28 s~~~~l~~lF~~~a-----H~~sitavAVs~~~~aSGssDetI~IYDm-~k~~qlg~ll~---HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSA-----HAGSITALAVSGPYVASGSSDETIHIYDM-RKRKQLGILLS---HAGSITALKFYPPLSKS 98 (362)
T ss_pred ccceeeeccccccc-----cccceeEEEecceeEeccCCCCcEEEEec-cchhhhcceec---cccceEEEEecCCcchh
Confidence 34444455555555 999999999999999999999 9999999 88888888887 99999999999764
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++|+.||.|.+|+...-.....++ +|.+.|+.++.+| ++.++.+.|
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK------------------------------~H~~~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLK------------------------------AHKGQVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeec------------------------------ccccccceeEecCCCceEEEEcCC
Confidence 9999999999999998765444333 8999999999999 777889999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
+.++.||+-+|+.-......+ .-+.+.|+|.| +++.+.. ..|-+|.+.. ......+. ....+.++
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~----------A~v~~~i~-~~~r~l~~ 214 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGR-NKIDIYQLDN----------ASVFREIE-NPKRILCA 214 (362)
T ss_pred ceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEec-cEEEEEeccc----------HhHhhhhh-ccccceee
Confidence 999999999888665552233 33449999999 4666655 4788998861 11221111 22345666
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCC--cceee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKE--NCYRC 314 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~--~~~~~ 314 (357)
.|. ++..|++|..|+.|.+||.++.. +...+.+|...|-.+.+-.+ +|+++++||.|++||++.. +....
T Consensus 215 ~~l-~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~ 290 (362)
T KOG0294|consen 215 TFL-DGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL 290 (362)
T ss_pred eec-CCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence 665 56789999999999999999755 55677789999998885433 9999999999999999764 22344
Q ss_pred eeeecCCcCceEEEEEe
Q 038568 315 MAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 315 ~~~~~~h~~~v~~~~~~ 331 (357)
+..... ...++|+...
T Consensus 291 l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 291 LAELNT-NVRLTCLRVK 306 (362)
T ss_pred eEEeec-CCccceeeeh
Confidence 555443 5567777653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=199.31 Aligned_cols=243 Identities=21% Similarity=0.322 Sum_probs=197.3
Q ss_pred CCCceEEEE--EecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSIT--FHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|+..|.++. |...+|+|++.|++|+|+.++.......+.++. +|.++|..+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~---------------------------Gh~GPVwqv 62 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT---------------------------GHSGPVWKV 62 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec---------------------------CCCCCeeEE
Confidence 788887655 445569999999999999998877645554443 999999999
Q ss_pred EEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccc
Q 038568 149 VVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 149 ~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
+|.. .+|++++.||.|.||.-.+++ ..... ..|...|++++|.|.+ .|++++.||.|.+.+.+.
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~------ 135 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS------ 135 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcC------
Confidence 9976 899999999999999988774 33444 6799999999999987 399999999999999872
Q ss_pred cccceeeeeEeeccccceeEEEEecC---C-----------CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGD---G-----------SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
. ...........|.-.|++++|.|. | +.|++|+.|+.|+||+...+ ....-..+.+|...|+.+
T Consensus 136 ~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 136 S-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred C-CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhh
Confidence 1 122333445679999999999984 4 56999999999999999986 333445688999999999
Q ss_pred eecCc------eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 286 INVGD------LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 286 ~~~~~------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|.|. +||+++.||++.||..+.....-....+......+..+.|+..++ +|+.++.|+.|.+|
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-------~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-------ILAVSGGDNKVTLW 283 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-------EEEEecCCcEEEEE
Confidence 99876 899999999999998874322222334445678899999999998 99999999999998
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=222.57 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=186.2
Q ss_pred EecceEEEeeCC-ceEEEeccCCcccc-------------ceeccccCCCCceEEEEEec-Cc--eEEeecCCeEEEEec
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHV-------------DTFSNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~-------------~~~~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vwd~ 99 (357)
+.+..+++++.+ ....|+. ..+..+ ..+.+ |.+.|.+++|+| +. |++++.|++|++||+
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~-~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQ-LGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred CCCCCcEeECCceEEEEEec-CCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 335677777777 7778876 332221 13455 999999999998 54 999999999999999
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
.++....... .....+.+|...|.+++|+| ++|++++.|++|++||+++++.+.
T Consensus 106 ~~~~~~~~~~-----------------------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 106 PEEGLTQNIS-----------------------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162 (493)
T ss_pred CCCccccccC-----------------------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence 7653211000 00012348999999999998 589999999999999999998888
Q ss_pred hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc-eeEEEEecCCCEEEEEe-
Q 038568 177 SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST-VNALALNGDGSLLFSGG- 253 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~- 253 (357)
.+ ..|...|.+++|+|++ .|++++.|+.|++||++ ....+..+..|.+. +..+.|.+++..+++++
T Consensus 163 ~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r----------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 163 VI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR----------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECC----------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 87 7899999999999999 59999999999999998 34456667778754 45678888877777654
Q ss_pred ---cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEec-CCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 254 ---CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 254 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
.|+.|++||+++.......... .+...+....|+++ +|++++ .|+.|++||+.+++..... ...+..++.+
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~--~~~s~~~~~g 308 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS--SYSSVEPHKG 308 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe--eccCCCCCcc
Confidence 4789999999876533222111 22334444455544 777776 5999999999987432221 1235567888
Q ss_pred EEEeeCC
Q 038568 328 LVAISSS 334 (357)
Q Consensus 328 ~~~~~~~ 334 (357)
++|.|..
T Consensus 309 ~~~~pk~ 315 (493)
T PTZ00421 309 LCMMPKW 315 (493)
T ss_pred eEecccc
Confidence 8888864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=213.32 Aligned_cols=250 Identities=18% Similarity=0.268 Sum_probs=204.1
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|.+.|+.+.+.|.. +++.+..+.+.|||..+......... . ......+.+|...-.+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-~-------------------~~Pdl~L~gH~~eg~g 182 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-E-------------------CRPDLRLKGHEKEGYG 182 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-c-------------------CCCceEEEeecccccc
Confidence 88999999999865 77788899999999875432221110 0 0001223377777788
Q ss_pred EEEec---CeEEEEecCCeEEEEEcCcchh-------hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccc
Q 038568 148 LVVKQ---GLMYSVSWDRSFKIWNASNYKC-------LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 148 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~ 215 (357)
++|++ ..|++++.|+.|++||+..... ...+ .+|...|..++|++-. .|++++.|+.+.|||.|
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R--- 258 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR--- 258 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcC---
Confidence 99999 8999999999999999975432 2223 7899999999999865 69999999999999999
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---e
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---L 291 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 291 (357)
.. ..++.....+|.++|+|++|+| ++..||+|+.|++|.+||+++... .+..+.+|...|.++.|+|. .
T Consensus 259 ---~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 259 ---SN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred ---CC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCce
Confidence 31 4456667788999999999999 667899999999999999998765 67788999999999999997 9
Q ss_pred EEEecCCCeEEEeeCCCC-----------cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKE-----------NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+++.|+.+.+||+..- .+.+++....||...|..+.|+|+.+ ..++|.+.|+.+.||+
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP------W~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP------WTIASVAEDNILQIWQ 402 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC------eEEEEecCCceEEEee
Confidence 999999999999999642 13456778889999999999999998 4789999999999995
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=197.87 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=204.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcccc--ceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHV--DTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~ 99 (357)
|.+.|++++|+ |++|||++.| .|+||++ ++.+.. +.++... .-+..+.++|.||. +++.-...++++|.+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~-~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDV-RDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEec-chhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 99999999999 9999999999 9999999 653221 2222111 23467889999996 666666778999987
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
...+.-.....+ +......+-..|.-.+..+-... .++++++.|..|.+|+++ |+.+..
T Consensus 163 ~K~~dG~~~~~~------------------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 163 VKKTDGSGSHHF------------------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred eecccCCCCccc------------------ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 643321000000 00000011125666676666655 899999999999999998 899988
Q ss_pred ccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC
Q 038568 178 VNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
+ ......-...+.+|+|+ +++++.---|++|.+-..+.. .-+....+..+.+|++.|..++|+++.+.+++.+.||
T Consensus 224 i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG--~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 224 I-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG--TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred e-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc--chhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 8 66667777889999996 777888889999997532211 1112345667899999999999999999999999999
Q ss_pred eEEEEeccc----CCceeeeeec----cCC-ccce-EEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceE
Q 038568 257 WIVVWERER----DHRMVFAEAL----WGH-TGAL-LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326 (357)
Q Consensus 257 ~i~vwd~~~----~~~~~~~~~~----~~~-~~~v-~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~ 326 (357)
++++||.+- ++.+..++.. ... ..++ +.++++++.||.+ ....++++..++++...++. ..|...|+
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e--~~h~~~Is 377 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE--DIHSTTIS 377 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH--HhhcCcee
Confidence 999999862 1111111111 111 1222 3444444555544 45579999999886444333 56899999
Q ss_pred EEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 327 SLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+++|+++++ +++|+| |..+++.
T Consensus 378 ~is~~~~g~-------~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 378 SISYSSDGK-------YIATCG-DRYVRVI 399 (420)
T ss_pred eEEecCCCc-------EEeeec-ceeeeee
Confidence 999999999 999998 6777763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=222.29 Aligned_cols=275 Identities=19% Similarity=0.325 Sum_probs=219.1
Q ss_pred Ccccee---EEEEe---cceEEEeeCC-ceEEEeccCCcc-----ccceeccccCCCCceEEEEEecCc--eEEeecCCe
Q 038568 28 HHMIIS---CLAVH---NSLLYAASLN-EINVFDLISDYS-----HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~---~~~~s---~~~l~t~~~d-~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~ 93 (357)
|...|. ++..+ +++|+|||.| .|++|+...... .+..++. |...|++++...++ |++++.|-+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~---HsDWVNDiiL~~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH---HSDWVNDIILCGNGKTLISASSDTT 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh---hHhHHhhHHhhcCCCceEEecCCce
Confidence 555566 55555 7889999999 999999832222 3667777 99999999998776 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE-ec--CeEEEEecCCeEEEEEcC
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-KQ--GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~--~~l~~~~~dg~i~iwd~~ 170 (357)
|++|+..... ..+...+. .|.+.|.|+++ .+ ..+|+|+-|+.|.+||++
T Consensus 97 VK~W~~~~~~-~~c~stir---------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 97 VKVWNAHKDN-TFCMSTIR---------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred EEEeecccCc-chhHhhhh---------------------------cccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 9999998764 23333332 89999999999 44 889999999999999999
Q ss_pred cch--hhhhc--------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 171 NYK--CLESV--------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 171 ~~~--~~~~~--------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
++. .+..+ ..++...|.+++.++.+ .+++|+..+.+++||.+ ..+.+..+++|...|..
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr----------t~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR----------TCKKIMKLRGHTDNVRV 218 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc----------cccceeeeeccccceEE
Confidence 873 33332 13677899999999999 48999999999999998 56677788899999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
+..++||+.+++++.||+|++||+...+ .+.++..|...|.++..+++ .+++|+.||.|..=|+++......+.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQr---Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic- 294 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQR---CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC- 294 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccc---eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-
Confidence 9999999999999999999999999776 45567779999999998887 99999999999999999863333332
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
....+|..+..+...+ -+-++..|+.|+-|
T Consensus 295 --k~daPv~~l~~~~~~~-------~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 295 --KEDAPVLKLHLHEHDN-------SVWVTTTDSSIKRW 324 (735)
T ss_pred --cCCCchhhhhhccccC-------Cceeeeccccceec
Confidence 2345677776665444 34556667777776
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=196.90 Aligned_cols=259 Identities=19% Similarity=0.314 Sum_probs=205.2
Q ss_pred eEEEeeCC-ceEEEeccCCc-----------cccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 41 LLYAASLN-EINVFDLISDY-----------SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
.|++|+.. .|.=+++.... .++-.+.. |.++|++++.+.-.+++|+.|.+|+|||+....+...+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a---H~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA---HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccc---cccceeEEEecceeEeccCCCCcEEEEeccchhhhcce
Confidence 36777777 77777762111 11334444 99999999999989999999999999999987765444
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
. .|.+.|+++.|.+ +.|++|+.||.|.+|+....+++..+ .+|..
T Consensus 80 l------------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~ 128 (362)
T KOG0294|consen 80 L------------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKG 128 (362)
T ss_pred e------------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-ccccc
Confidence 3 7899999999999 48999999999999999999999999 89999
Q ss_pred cEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.|+.++++|.++ -++.+.|+.+++||+- .++ ...+..+ ....+.+.|+|.|.+++.+..++ |-+|.+
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV------~Gr--~a~v~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~ 196 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLV------RGR--VAFVLNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQL 196 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhh------cCc--cceeecc---CCcceeeEEcCCCCEEEEEeccE-EEEEec
Confidence 999999999996 5678899999999987 111 1222222 22334499999999998888776 999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
.+......+. ....+.|+.|... .|++|++|+.|.+||.... .+...+.+|...|-++.+-.+.. ..
T Consensus 197 d~A~v~~~i~----~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~-----~~ 264 (362)
T KOG0294|consen 197 DNASVFREIE----NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNPE-----HE 264 (362)
T ss_pred ccHhHhhhhh----ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecCC-----ce
Confidence 8765332221 2255777777655 9999999999999999985 77888999999999998654421 13
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
+|+|+|.||.|++||
T Consensus 265 ~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWD 279 (362)
T ss_pred EEEEeccCceEEEEE
Confidence 999999999999997
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=202.32 Aligned_cols=241 Identities=18% Similarity=0.283 Sum_probs=197.8
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
.+.+|.. |...|.+++.+|+. ++||+.|....+|+..+++....+.
T Consensus 56 S~~tF~~---H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------------------------- 103 (399)
T KOG0296|consen 56 SLVTFDK---HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------------------------- 103 (399)
T ss_pred ceeehhh---cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-----------------------------
Confidence 4566776 99999999999976 8999999999999999988543332
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|...|+++.|+. .+||+|..+|.|+||+..++.....+ ...-..+.=+.|+|.+ .|++|+.||.+-.|.+.
T Consensus 104 -gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip--- 178 (399)
T KOG0296|consen 104 -GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP--- 178 (399)
T ss_pred -CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEEecccccEEEeecCCCcEEEEECC---
Confidence 9999999999999 89999999999999999999888887 4566778889999988 49999999999999997
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc-------------------
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW------------------- 276 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------------- 276 (357)
.....+.+.+|..++++=.|.|+|+.++++..||+|++||+.++.++.....-.
T Consensus 179 -------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 179 -------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred -------CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 335677888999999999999999999999999999999999886544332000
Q ss_pred -----------------------------CCccceEEEeecC---c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 277 -----------------------------GHTGALLCLINVG---D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 277 -----------------------------~~~~~v~~~~~~~---~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
.+...+.++.+.| . +.|+|+-||+|.|||+... .++..-.|.
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he 327 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHE 327 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCC
Confidence 0111111222222 2 7789999999999999874 345556689
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|+.+.|.+ .. +|++++.||.|+.||
T Consensus 328 ~~V~~l~w~~-t~-------~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 328 DGVTKLKWLN-TD-------YLLTACANGKVRQWD 354 (399)
T ss_pred CceEEEEEcC-cc-------hheeeccCceEEeee
Confidence 9999999999 44 899999999999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=195.28 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=217.3
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCcc----------ccc--eeccccCCCCceEEEEEecC--c-eEEe
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYS----------HVD--TFSNDLSSSGSVKSITFHIT--K-IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~----------~~~--~~~~~~~~~~~v~~l~~~~~--~-l~~~ 88 (357)
|.+.|+++... |+|+++|+.| .|.+||+ +... ... .-+....|.-.|.++.|.|- + +.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl-~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDL-QNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEe-ccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 99999999998 9999999999 9999999 4422 011 11222358889999999983 3 8899
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-----CeEEEEecCCe
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----GLMYSVSWDRS 163 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~ 163 (357)
+.|.+++|||.++.+....+ ...+.|.+-+++| .++|+|..|-.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F-------------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDF-------------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred cccceEEEeecccceeeEEe-------------------------------ecCceeehhhcChhhhcceEEEEecCCCc
Confidence 99999999999987654443 3356777777777 57888999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc-----cccccceeeeeEeeccccc
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN-----KERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 236 (357)
|++.|+.+|..-..+ .+|...|.++.|+|.. .|++|+.||.|++||++..... .........+..-..|.+.
T Consensus 170 VrLCDi~SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred EEEEeccCCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 999999999999999 9999999999999987 3999999999999999843111 0111122223335578899
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc----eEEEeecCceEEEecCCCeEEEeeCCCCcce
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA----LLCLINVGDLLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
|+.++|..++.++++++.|..+++|+..+++..........|... +..-+.+.+.++---.++.+.++++-++
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg--- 325 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG--- 325 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCc---
Confidence 999999999999999999999999999887643221111112111 1111222333333344588999999887
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..+..+..|-..|.+..+-|+-+ ...+|+.|+.|..|
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq-------~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFE-------QCFTGDMNGNIYMW 362 (397)
T ss_pred eEEEeeecccceeeEEeecCchh-------hhhccccCCccccc
Confidence 66788889988999999999988 89999999999888
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=217.99 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=222.6
Q ss_pred eEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec------------Cc-eEEeecCCeEEE
Q 038568 33 SCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI------------TK-IFTAHQDCKIRV 96 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~------------~~-l~~~~~d~~i~v 96 (357)
-++.|+ .+.|.+...| .++|||+ .+...+.......-|...|+.+.-.| .+ ++|++.|++|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDv-rD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDV-RDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEec-cccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 356677 7788888999 9999999 55443332222222888888877654 12 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccc-------cccccccccEEEEEEec--CeEEEEecCCeEEEE
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK-------RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIW 167 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw 167 (357)
|++.....-..+....-..+.........+...+..... .........+.+++.+| ++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 999863322221111000000000000000000000000 11124456799999999 999999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEecCC----eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc----------
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH---------- 233 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------- 233 (357)
++...+....+ .+|...|.|+.++... +|++++.|..|.+||+... ..++.++.+|
T Consensus 487 ~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 487 DLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred Eehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhcccccceeEEEEe
Confidence 99988888888 8999999999998643 4999999999999998621 1112222222
Q ss_pred ---------------------------------------ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 234 ---------------------------------------RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 234 ---------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
...++.|+..|..+++++++.|..|+|||+.++++...++.
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc
Confidence 23466777778888999999999999999999998888887
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
-.+|.+....+..+|. ||++.+.|.++.++|+.++ +++....||...|+++.|.+|.+ .|++.+.||.
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nDCk-------HlISvsgDgC 706 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLNDCK-------HLISVSGDGC 706 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecccch-------hheeecCCce
Confidence 7888887766666555 9999999999999999998 88899999999999999999998 9999999999
Q ss_pred EEecC
Q 038568 353 IKVWD 357 (357)
Q Consensus 353 v~~wd 357 (357)
|.+|.
T Consensus 707 IFvW~ 711 (1080)
T KOG1408|consen 707 IFVWK 711 (1080)
T ss_pred EEEEE
Confidence 99994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=204.55 Aligned_cols=242 Identities=19% Similarity=0.313 Sum_probs=200.4
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
.+..+++.+ |..+|..+.|| .++|++++.+ .+.+||+ .++.....+.. ++...+.+++|.||+ +++|
T Consensus 259 ~kl~~tlvg-----h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv-~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 259 FKLKKTLVG-----HSQPVSYIMWSPDDRYLLACGFDEVLSLWDV-DTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred eeeeeeeec-----ccCceEEEEECCCCCeEEecCchHheeeccC-Ccchhhhhccc--CcCCCcceeEEccCCceeEec
Confidence 556666665 99999999999 8999999999 9999999 99999888874 256899999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|+++..||++..... .-.. -....|.+++..+ +++++.+.|..|++
T Consensus 331 s~dr~i~~wdlDgn~~~-~W~g-----------------------------vr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 331 SPDRTIIMWDLDGNILG-NWEG-----------------------------VRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred CCCCcEEEecCCcchhh-cccc-----------------------------cccceeEEEEEcCCCcEEEEEecccceee
Confidence 99999999999865321 1110 1124688999888 88889999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc--eeEEEEe
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST--VNALALN 243 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 243 (357)
++.++......+ ....+|++++.+.+++ +++.-.+..+.+||++ ....+..+.+|... +-.-+|.
T Consensus 381 ~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~----------e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 381 YNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLE----------ENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred echhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecc----------hhhHHHHhhcccccceEEEeccC
Confidence 999876666544 5677899999999995 7777789999999998 55667777777654 4444554
Q ss_pred c-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCC
Q 038568 244 G-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 244 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~ 308 (357)
. +..++++|++|+.|+||+..+++ ++..+.||...|.|++|+|. ++|++++||+||||....
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4 55799999999999999999988 66788899999999999986 999999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=200.23 Aligned_cols=263 Identities=20% Similarity=0.312 Sum_probs=213.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccce--------------eccc-cCCCCceEEEEEecCc--eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDT--------------FSND-LSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~--------------~~~~-~~~~~~v~~l~~~~~~--l~~ 87 (357)
|.-+|.|++++ +++.++++.+ +|.=|+. .++..... ++.. ..|...|.+++.++|+ |++
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v-~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDV-LTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeeh-hcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 99999999999 8899999999 9999998 66553311 1111 1388899999999998 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
|+.|..|.||+.++.+..+.+ .+|.+.|.+++|-. +.+++++.|+.|+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~------------------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVF------------------------------KGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred cCCCceEEEecCcccchhhcc------------------------------cccccceeeeeeecCccceeeeecCCceE
Confidence 999999999999988765443 39999999999998 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCeEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+|++.....+.++ .+|++.|.+|....-+++++ |+.|+++++|++. ......+.++.+.+-|++|-.
T Consensus 270 vw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-----------eesqlifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 270 VWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-----------EESQLIFRGGEGSIDCVAFIN 337 (479)
T ss_pred EEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc-----------ccceeeeeCCCCCeeeEEEec
Confidence 9999999999999 89999999999887777555 5599999999985 233445678888999999975
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeecc---------CCccceEEEeecC--ceEEEecCCCeEEEeeCCCC-cce
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALW---------GHTGALLCLINVG--DLLASGSADRTVRIWQRGKE-NCY 312 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~-~~~ 312 (357)
+ ..+++|+.||.|.+|++.+.+++....... .++.+|++++..+ +++++|+.+|.|++|.+..+ ...
T Consensus 338 ~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 338 D-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred c-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 5 579999999999999998877654433221 1223677777655 49999999999999999886 234
Q ss_pred eeeeeecCCcCceEEEEEeeCCC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.++..+. -.+-|++++|++++.
T Consensus 417 ~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 417 NLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ceeeecc-cccEEEEEEEccCCC
Confidence 4555555 567899999999998
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=192.26 Aligned_cols=249 Identities=18% Similarity=0.261 Sum_probs=197.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEEe-cCc---eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFH-ITK---IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~-~~~---l~~~~~d~~i~vwd 98 (357)
|++.|..+..+ |++|||++.| +|+|+....++ +++.++.+ |.++|..++|. |.. |++++.||.|.||.
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G---h~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG---HSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC---CCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 99999998887 9999999999 99999994444 56788888 99999999997 443 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcc--
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNY-- 172 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-- 172 (357)
-.+++..+.. . +..|...|++++|.| -.|++++.||.|.+.+.+..
T Consensus 87 e~~g~w~k~~-e---------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 87 EENGRWTKAY-E---------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred cCCCchhhhh-h---------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 8887533222 1 238999999999999 67999999999999998764
Q ss_pred hhhhhccccccccEEEEEEecC---C------------eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 173 KCLESVNKAHEDAVNAVVVSDN---G------------VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~~~~---~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
-....+...|.-.|++++|.|. | +|++|+.|..|++|+.. .. .......+.+|...|
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~------~~--~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD------SD--SWKLERTLEGHKDWV 210 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC------Cc--chhhhhhhhhcchhh
Confidence 2333444789999999999874 2 49999999999999987 21 345556689999999
Q ss_pred eEEEEecCC----CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcc
Q 038568 238 NALALNGDG----SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 238 ~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
+.++|.|.- .+|+++++||++.||..+..........+......+..++|+ ++.|+.++.|+.|.+|.-....+
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 999999943 489999999999999887443333333444455667666665 66999999999999998765434
Q ss_pred eeee
Q 038568 312 YRCM 315 (357)
Q Consensus 312 ~~~~ 315 (357)
++.+
T Consensus 291 w~~v 294 (299)
T KOG1332|consen 291 WEEV 294 (299)
T ss_pred EEEc
Confidence 4443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=225.18 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=220.8
Q ss_pred CccceeEEEEe--cceEEEee--CC-ceEEEeccCC------------ccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 28 HHMIISCLAVH--NSLLYAAS--LN-EINVFDLISD------------YSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~--~d-~i~iw~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+...|.++..+ |..+|||+ .| .++||+. +. .+.+..... |.+.|+|+.|+||+ ||+|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~-~~vl~~~~~~~~~l~k~l~~m~~---h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQ-DPVLDEKEEKNENLPKHLCTMDD---HDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecc-ccccchhhhhhcccchhheeecc---ccCceeEEEECCCCCeEeec
Confidence 56679999999 99999999 88 8999997 33 223334444 99999999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEE-ecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTV-RRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
+.|+.|.||+.........+.. ..+...+ ......++.+|...|.+++|+| .++++++.|++|.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs-------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGS-------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred cCcceEEEeeecccCCcccccc-------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 9999999999874100000000 0000000 0111244568999999999999 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec------ccccee
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK------HRSTVN 238 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~~v~ 238 (357)
+||.++.+.+..+ .+|...|..+.|.|-| +|++-+.|++|++|+.. .......+.+ ......
T Consensus 155 iwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~----------dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 155 IWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS----------DWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEEEEcc----------cceeeEeeccchhhCCCcceee
Confidence 9999999989888 9999999999999999 69999999999999976 2222222222 234578
Q ss_pred EEEEecCCCEEEEEec----CCeEEEEecccCCceeeeeeccCCccceEEEeecCc-------------------eEEEe
Q 038568 239 ALALNGDGSLLFSGGC----DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-------------------LLASG 295 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~l~~~ 295 (357)
.+.|+|||++|++.-. -..+.|.+-.+.+ .-..+.||..++.++.|+|. .+|+|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 8999999999998743 3357777765443 45678899999999999842 57899
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|++|-||.....++.-.+. .-....|.+++|+|||- .|+.+|.||+|.+.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~-------~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGF-------SLFACSLDGTVALI 352 (942)
T ss_pred cCCccEEEEecCCCCchhhhh--hhhcCceeeeeEcCCCC-------eEEEEecCCeEEEE
Confidence 999999999997764433333 33467899999999998 89999999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=200.34 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=203.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....+.|..|+||+ |++|+.||-|.+|+..+++..+.++-.. ...+.-+..+|.|+
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------qd~fMMmd~aVlci 269 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------QDNFMMMDDAVLCI 269 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh----------------------hcceeecccceEEE
Confidence 56778899999998 9999999999999999987654443211 12233678899999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.|+. .++++|+.||.|++|.+++|.|+..|..+|...|+|+.|+.|+ .+++++.|.++++--+. .++
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK----------SGK 339 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK----------SGK 339 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc----------cch
Confidence 9999 8999999999999999999999999977999999999999998 69999999999999887 677
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceEEEecCCCeEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLLASGSADRTVR 302 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 302 (357)
.+..+++|.+.|+...|.++|..+++++.||+|++|+.++.++...++.+ +...+|..+..-| ..++++...++|+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 88999999999999999999999999999999999999998866554433 3556676666544 4999999999999
Q ss_pred EeeCCCCcceeeeeeecC---CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 303 IWQRGKENCYRCMAFLEG---HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.++.. +.+..+.. -.+...+.+.+|.+. ++.+.+.|+.++.+
T Consensus 419 imn~qG----QvVrsfsSGkREgGdFi~~~lSpkGe-------wiYcigED~vlYCF 464 (508)
T KOG0275|consen 419 IMNMQG----QVVRSFSSGKREGGDFINAILSPKGE-------WIYCIGEDGVLYCF 464 (508)
T ss_pred EEeccc----eEEeeeccCCccCCceEEEEecCCCc-------EEEEEccCcEEEEE
Confidence 999874 44554432 335566778999998 99999999988765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=219.75 Aligned_cols=277 Identities=17% Similarity=0.259 Sum_probs=213.3
Q ss_pred cceeEEEEe--cceEEEeeCCceEEEeccCCccc----cceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecC
Q 038568 30 MIISCLAVH--NSLLYAASLNEINVFDLISDYSH----VDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKIT 100 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~ 100 (357)
....+|..+ -..++.++...+.|+.+ +.... ...+.......-.+..+.|... .|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai-~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAI-NPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEee-CcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 345555565 55677777667777776 33211 1111111112234556778743 39999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
....-..+ ..|..|...+.++.|++ ++|++|+.||+|++||++..+...+
T Consensus 119 k~~rnk~l---------------------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 119 KSIRNKLL---------------------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ccccchhh---------------------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 63221222 23348999999999999 9999999999999999999998888
Q ss_pred ccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 178 VNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+ ......|..+.|+|.. +|+++...|.+++||+| ...++...+.+|.++|.++.|+|++.+||+|+.|
T Consensus 172 ~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 172 F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred c-cccchhhhceeeccCCCceEEEecCCceEEEeecc---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 8 7788899999999854 69999999999999999 3456677888999999999999999999999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecC--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSA--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
+.|+|||+.+.+..... +. ....++.++.|-|. .|++++. |-.|+|||++.+ +-+...+..|...++.++|
T Consensus 242 K~vkiWd~t~~~~~~~~-tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKH-TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred ccEEEEeccCCCcccee-EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceec
Confidence 99999999876533222 11 23467899999887 7887764 789999999986 6778889999999999999
Q ss_pred eeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 331 ISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..... ..|.+++.||+|.
T Consensus 318 ~~~d~------~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 318 DSGDR------INLWSCSKDGTVL 335 (839)
T ss_pred cCCCc------eeeEeecCccHHH
Confidence 77333 3899999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=214.22 Aligned_cols=196 Identities=13% Similarity=0.202 Sum_probs=147.0
Q ss_pred cccccEEEEEEec---CeEEEEecCCeEEEEEcCcch--------hhhhccccccccEEEEEEecCC-e-EEEEeCCCeE
Q 038568 140 EHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYK--------CLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRI 206 (357)
Q Consensus 140 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i 206 (357)
+|.+.|.+++|+| .+|++|+.||+|++||+.++. ++..+ .+|...|.+++|+|++ . +++++.|+.|
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 8999999999998 689999999999999997642 22234 6789999999999988 3 6789999999
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE-
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL- 285 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~- 285 (357)
++||++ .......+. |...|.+++|+|+|.+|++++.|+.|+|||+++++. ...+.+|.+.+.+.
T Consensus 151 rIWDl~----------tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 151 NIWDIE----------NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKN 216 (568)
T ss_pred EEEECC----------CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEE
Confidence 999998 223333343 567899999999999999999999999999998874 34566787654322
Q ss_pred ----eecC--ceEEEecCCC----eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 286 ----INVG--DLLASGSADR----TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 286 ----~~~~--~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+++ ++|++++.|+ .|+|||+++.........+..+.+.+......+++. ++++|+.|+.|++
T Consensus 217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-------l~lsGkGD~tIr~ 289 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-------IYLIGKGDGNCRY 289 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-------EEEEEECCCeEEE
Confidence 2223 4888877664 799999996432222223334444444444444465 8899999999999
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
||
T Consensus 290 ~e 291 (568)
T PTZ00420 290 YQ 291 (568)
T ss_pred EE
Confidence 96
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=213.29 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=179.0
Q ss_pred CceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
..|.....+++ .+++++.+.....|+...+............ ......+.+|.+.|.+++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~-----------------~~~~~~l~GH~~~V~~v~f 83 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL-----------------ASNPPILLGQEGPIIDVAF 83 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC-----------------CCCCceEeCCCCCEEEEEE
Confidence 34444455555 3888888888889987654321111110000 0011234589999999999
Q ss_pred ec---CeEEEEecCCeEEEEEcCcch-------hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccc
Q 038568 151 KQ---GLMYSVSWDRSFKIWNASNYK-------CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 151 ~~---~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
+| ++|++|+.|++|++||+.++. ++..+ .+|...|.+++|+|++ .|++++.|+.|++||++
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~------ 156 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE------ 156 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC------
Confidence 98 689999999999999997642 34555 7899999999999975 69999999999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce-EEEeecCc--eEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL-LCLINVGD--LLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~--~l~~~ 295 (357)
.......+..|...|.+++|+|++.+|++++.|+.|++||+++++. ...+.+|.... ..+.|.++ .++++
T Consensus 157 ----tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 ----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred ----CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 3456667788999999999999999999999999999999998774 34555676543 34455544 55554
Q ss_pred c----CCCeEEEeeCCCCcceeeeeeecCC-cCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 296 S----ADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 296 ~----~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
+ .|+.|++||+++.. .++.....+ ...+....|++++. +|++++ .||.|++||
T Consensus 230 G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-------~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-------LLYIGSKGEGNIRCFE 288 (493)
T ss_pred ecCCCCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-------EEEEEEeCCCeEEEEE
Confidence 3 48999999998753 233333333 34556667889988 888777 599999997
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=207.38 Aligned_cols=314 Identities=16% Similarity=0.242 Sum_probs=237.5
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--- 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--- 84 (357)
+.+-.|...+++ |++.|.||... |.+||+|+.| +|+||.+ .++.++.+++ ..+.|.|++|+|..
T Consensus 387 PFPt~~~lvyrG-----Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi-~TgRcvr~~~----~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 387 PFPTRCALVYRG-----HTGLVRSISVDPSGEWLASGSDDGTVRIWEI-ATGRCVRTVQ----FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred CCcceeeeeEec-----cCCeEEEEEecCCcceeeecCCCCcEEEEEe-ecceEEEEEe----ecceeEEEEecCCCCce
Confidence 344556666775 99999999988 9999999999 9999999 9999999998 77899999999975
Q ss_pred eEEeecCCeEEEEecCCcccee------eeeecCc--cccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce
Q 038568 85 IFTAHQDCKIRVWKITASRQHQ------LVSTLPT--VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL 154 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 154 (357)
++++.....+.|-+..-+..+. .+...+. ..+.....+.....-... ....+...|...|.++.|+. .+
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~-~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE-KGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc-cceEEEEecCCccceeeeecCCce
Confidence 4444545556666654442211 1111110 000111111111000000 00134457889999999999 88
Q ss_pred EEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 155 MYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 155 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
|++...+ ..|.|.++...+....| ....+.+.++.|+|.. +|++++ ...|++||+. ....+..+
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~----------kqelvKkL 603 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS----------KQELVKKL 603 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCCceEEEEe-ccceEEEehh----------HHHHHHHH
Confidence 8887764 56999999887777777 6677889999999988 555554 4789999997 45555666
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee---
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ--- 305 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~--- 305 (357)
......|..++.+|.|..|+.|+.|+.+..||+.-... +.+.+.-|...++.++|++. ++++|+.||++.|+-
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 66677899999999999999999999999999986543 55677889999999999998 899999999999984
Q ss_pred ---CCCCcceeeeeeecCCcCc----eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 306 ---RGKENCYRCMAFLEGHEKP----VKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 306 ---~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+......-++..+++|... |....|+|... +|+++|.||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-------WLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEeecccCCCc-------eEEecCCCceEEee
Confidence 3334456778899999876 99999999999 99999999999998
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=187.18 Aligned_cols=236 Identities=19% Similarity=0.332 Sum_probs=195.3
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+.+++ |...|.+++|+.++ |++++.|+++.+|+++..+..... ...+
T Consensus 14 r~~~~---~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~----------------------------~~~g 62 (313)
T KOG1407|consen 14 RELQG---HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL----------------------------VYRG 62 (313)
T ss_pred HHhhh---hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh----------------------------cccC
Confidence 44555 99999999999887 999999999999999876432221 1238
Q ss_pred ccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 141 HWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 141 ~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
|.+.|-.++|.| +.+++++.|.+|++||++.+++...+ . ....-.-+.|+|+| +++++..|..|.+.|.+
T Consensus 63 h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i-~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r---- 136 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI-E-TKGENINITWSPDGEYIAVGNKDDRITFIDAR---- 136 (313)
T ss_pred CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe-e-ccCcceEEEEcCCCCEEEEecCcccEEEEEec----
Confidence 999999999999 89999999999999999999999888 3 33334457788887 79999999999999998
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS 294 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 294 (357)
..+..... .....+.-++|+.++.+++.....|.|.|.....-+ +...+..|.....|+.|+|+ +||+
T Consensus 137 ------~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---pv~si~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 137 ------TYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---PVQSIKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred ------ccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccc---cccccccCCcceEEEEECCCCceEee
Confidence 22332222 234567788999888888877788999999887554 66788889999999999987 9999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|+.|-.+.+||++.- .++..+..+.-||+.+.|+.+++ +||+||.|..|-|
T Consensus 207 GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~-------~lASaSEDh~IDI 257 (313)
T KOG1407|consen 207 GSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGR-------MLASASEDHFIDI 257 (313)
T ss_pred ccccceeeccChhHh---hhheeeccccCceEEEEeccCcc-------eeeccCccceEEe
Confidence 999999999999974 77788888899999999999999 9999999988754
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=185.66 Aligned_cols=249 Identities=18% Similarity=0.278 Sum_probs=192.7
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+|..-|+++.|.+.+ +++|+.|++++|||.+.+...-... ..|..|.+.|..
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T--------------------------s~Wrah~~Si~r 64 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT--------------------------SSWRAHDGSIWR 64 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe--------------------------eeEEecCCcEEE
Confidence 488999999999865 9999999999999975544222211 234489999999
Q ss_pred EEEec----CeEEEEecCCeEEEEEcCc--c-------hhhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEc
Q 038568 148 LVVKQ----GLMYSVSWDRSFKIWNASN--Y-------KCLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWER 211 (357)
Q Consensus 148 ~~~~~----~~l~~~~~dg~i~iwd~~~--~-------~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~ 211 (357)
+.|.+ +.+|+++.|+++.||.-.. . ....++ ......|+.+.|.|.. +|++++.||.+|||+.
T Consensus 65 V~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 65 VVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 99988 8899999999999997521 1 122233 5567889999999965 4999999999999986
Q ss_pred cccccccccccceeeeeEee-------ccccceeEEEEec---CCCEEEEEecC-----CeEEEEecccCC-ceeeeeec
Q 038568 212 SVVDHNKERKSRHMLVTTLV-------KHRSTVNALALNG---DGSLLFSGGCD-----RWIVVWERERDH-RMVFAEAL 275 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~ 275 (357)
..... -....+..++. .+..+..|+.|+| ...+|++|+.+ +.++||...... .......+
T Consensus 144 ~dp~n----Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 144 PDPMN----LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred CCccc----cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 52111 11122222222 4667788999998 34578888776 479999887655 56667788
Q ss_pred cCCccceEEEeecCc------eEEEecCCCeEEEeeCCCCc-----------------ceeeeeeecCCcCceEEEEEee
Q 038568 276 WGHTGALLCLINVGD------LLASGSADRTVRIWQRGKEN-----------------CYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~------~l~~~~~dg~i~vw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.+|..+|..++|.|+ +||+++.|| |+||.+.... +.+.+..+..|++.|..+.|+-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 899999999999987 899999999 9999987311 3456677889999999999999
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+. .|++.|.||.||+|.
T Consensus 299 tGt-------iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 299 TGT-------ILSSTGDDGCVRLWK 316 (361)
T ss_pred eee-------EEeecCCCceeeehh
Confidence 998 999999999999994
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=182.92 Aligned_cols=271 Identities=15% Similarity=0.274 Sum_probs=200.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC----ccccceeccccCCCCceEEEEEec-Cc---eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD----YSHVDTFSNDLSSSGSVKSITFHI-TK---IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~-~~---l~~~~~d~~i~v 96 (357)
|.+-|.|+.|+ |+.+|||+.| +|+|||. +. .......+. |.+.|..+.|.+ .. +++++.|+++.|
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~-~~~s~~W~~Ts~Wra---h~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDS-TSDSGTWSCTSSWRA---HDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEec-cCCCCceEEeeeEEe---cCCcEEEEEecCccccceEEEEecCCceee
Confidence 99999999999 9999999999 9999996 33 344556676 999999999985 32 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNY 172 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 172 (357)
|.-........- ........+....+.|+++.|.| -.+++++.||+++||+.-..
T Consensus 88 WEE~~~~~~~~~---------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 88 WEEQEKSEEAHG---------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eeeccccccccc---------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 986321110000 00000122236678999999999 57999999999999986432
Q ss_pred ------hhhhhcc------ccccccEEEEEEecCC----eEEEEeCC-----CeEEEEEccccccccccccceeeeeEee
Q 038568 173 ------KCLESVN------KAHEDAVNAVVVSDNG----VVYTGSAD-----GRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 173 ------~~~~~~~------~~~~~~v~~~~~~~~~----~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
.....++ ..+..+..|+.|+|.. +|++|+.+ +.+.||... +.......+.++.
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~------e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN------ENGRKWLKVAELP 220 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec------CCcceeeeehhcC
Confidence 2333331 2456778899999765 36666655 488999876 4444666777888
Q ss_pred ccccceeEEEEecC----CCEEEEEecCCeEEEEecccC-----------------CceeeeeeccCCccceEEEeec--
Q 038568 232 KHRSTVNALALNGD----GSLLFSGGCDRWIVVWERERD-----------------HRMVFAEALWGHTGALLCLINV-- 288 (357)
Q Consensus 232 ~~~~~v~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~-- 288 (357)
+|..+|+.++|.|+ -..|++++.|| |+||.+... -++..+..+.+|.+.|..+.|+
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 99999999999994 24899999999 999998731 1233455678999999999886
Q ss_pred CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe
Q 038568 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 289 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 331 (357)
+..|++.|.||.||+|...-...+++...+... +.++...|.
T Consensus 300 GtiLsStGdDG~VRLWkany~n~~kC~sv~~~e-~~~~~~~~~ 341 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE-GSVTKPDFS 341 (361)
T ss_pred eeEEeecCCCceeeehhhhhhhhheeeeEEecc-CCCCCcccc
Confidence 559999999999999988766667777766643 234444443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=205.83 Aligned_cols=332 Identities=20% Similarity=0.209 Sum_probs=238.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--c---ceEEEeeCC-ceEEEeccCCc--------------------cccc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--N---SLLYAASLN-EINVFDLISDY--------------------SHVD 63 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~---~~l~t~~~d-~i~iw~~~~~~--------------------~~~~ 63 (357)
...+.+.+..++| |.+.|.+++|. + -+||++|.| .||||.+.... ....
T Consensus 177 ~~d~f~~v~el~G-----H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 177 SADSFARVAELEG-----HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred CCcceeEEEEeec-----cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 3446677777776 99999999998 2 378899999 99999983221 0111
Q ss_pred eec------c-ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--e--eeeeecCccc-cceeeeecCCCeEE
Q 038568 64 TFS------N-DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--H--QLVSTLPTVK-DRLIRSVLPNNYVT 129 (357)
Q Consensus 64 ~~~------~-~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (357)
.+. . ..+|...|+++.|+|.+ |++++.|.++.+|...+..- . .++....... +.....+.++....
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 111 0 01499999999999997 99999999999999876532 1 1222222111 12222333333111
Q ss_pred ----------Eec-cc------ccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc----hhhhhccccccccE
Q 038568 130 ----------VRR-HK------KRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY----KCLESVNKAHEDAV 186 (357)
Q Consensus 130 ----------~~~-~~------~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v 186 (357)
... .. .....+|.+.|.+++|.| .+|++.+.|-+-|++-.-.. ..+.+- +.|...+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP-QiHGyDl 410 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP-QIHGYDL 410 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc-ccccccc
Confidence 111 11 134479999999999999 99999999999999865411 122222 5688899
Q ss_pred EEEEEec-CCeEEEEeCCCeEEEEEccccc----------cc---------------------------cccc-------
Q 038568 187 NAVVVSD-NGVVYTGSADGRIRVWERSVVD----------HN---------------------------KERK------- 221 (357)
Q Consensus 187 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~----------~~---------------------------~~~~------- 221 (357)
+|+++-+ +-++++|.....+|+|+....- .. .++.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999988 4479999999999999864210 00 0000
Q ss_pred ----------------------cceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeee
Q 038568 222 ----------------------SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 222 ----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~ 274 (357)
.....+..+.+|...|++++.+|+++++++++.. ..|++|+..+..+ ...
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---~~~ 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---VQE 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---hhe
Confidence 0111234566899999999999999999999864 3599999987763 446
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcce-eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCY-RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
+.+|.-.|+.+.|+++ +|++.+.|+++.+|........ ......+.|..-|.+..|+|++. +++|+|.|.
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------~FaTaSRDK 640 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------YFATASRDK 640 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------eeEEecCCc
Confidence 7889999999999988 9999999999999998654211 12344788999999999999998 899999999
Q ss_pred eEEecC
Q 038568 352 EIKVWD 357 (357)
Q Consensus 352 ~v~~wd 357 (357)
+|++|.
T Consensus 641 ~VkVW~ 646 (764)
T KOG1063|consen 641 KVKVWE 646 (764)
T ss_pred eEEEEe
Confidence 999993
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=199.00 Aligned_cols=239 Identities=18% Similarity=0.275 Sum_probs=195.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
...+.+|.+ -.++|+++.|. ++.+++++.| .+++|++ +..+...++.+ |.+.|+++.|.... +++|
T Consensus 209 ~~~~~tLaG-----s~g~it~~d~d~~~~~~iAas~d~~~r~Wnv-d~~r~~~TLsG---HtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 209 SELISTLAG-----SLGNITSIDFDSDNKHVIAASNDKNLRLWNV-DSLRLRHTLSG---HTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred hhhhhhhhc-----cCCCcceeeecCCCceEEeecCCCceeeeec-cchhhhhhhcc---cccceeeehhhccccceeec
Confidence 446666765 78899999999 8899999999 9999999 99999999999 99999999998654 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN 168 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd 168 (357)
+.|.+|+.||+....+.+.+- ..+.+.+++..+..+++|-.|++|++||
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l-------------------------------~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVL-------------------------------PGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred cccchhhhhhhhhhheecccc-------------------------------ccccccceEecceeeeecccccceEEEe
Confidence 999999999998865443332 2345666777677889999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee----ccccceeEEEEe
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV----KHRSTVNALALN 243 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~ 243 (357)
+++..+.... +..+.|+++..++++ .+++++.|..+.+.|+++ ......+. ......+.+.|+
T Consensus 329 ~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt----------~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 329 IRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT----------KEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeeccc----------ccEEEEeeccccccccccceeEEC
Confidence 9999998887 445599999999999 488999999999999982 22222222 223458899999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
|++.|+++|+.||.|+||++.+++....... ......|++++|++. .+++++.++.+.+|.
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999998875433332 222336999999876 999999999999993
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=195.48 Aligned_cols=252 Identities=21% Similarity=0.382 Sum_probs=203.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc-ccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 147 (357)
|.-+|.+++++|+. .++++.|++|.-|++.+++....+..-... +.......+.- ..|...+.+
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------------~k~~~~~~k~~r~~h~keil~ 207 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------------LKSHGNPLKESRKGHVKEILT 207 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-------------hhhccCCCCcccccccceeEE
Confidence 99999999999985 999999999999999988754322211100 00000000000 389999999
Q ss_pred EEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 148 LVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 148 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
++.++ ++|++|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-... .+++++.|+.|++|++. ..
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~----------~~ 276 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID----------QL 276 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh----------Hh
Confidence 99999 99999999999999999999999998 8999999999998655 69999999999999998 56
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRI 303 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~v 303 (357)
..+.++.+|+..|.++.....++.+.+|+.|+++++|++....+ ..+.++.+.+-|++|-.+ .+++|+++|.|.+
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 67788999999999999988888888899999999999964433 245578889999998766 9999999999999
Q ss_pred eeCCCCcceeeeeeec---------CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLE---------GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++.+.++.-...... .+...|++++..|... ++++|+.+|.||+|.
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-------L~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-------LLASGSWSGCVRLWK 408 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCc-------eEEecCCCCceEEEE
Confidence 9998764322111111 1223899999999998 999999999999993
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=196.99 Aligned_cols=232 Identities=19% Similarity=0.351 Sum_probs=192.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~ 101 (357)
.++.|.++.|- |++||+|... .|+|||. .+...++.+.+ |+.+|..+.|+|.. |++|+.|+.+++||+.+
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~a---h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-KSRVILRQLYA---HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEecc-ccHHHHHHHhh---ccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 66789999998 9999999888 9999998 88778888888 99999999999865 99999999999999998
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcc-hhhhh
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNY-KCLES 177 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~ 177 (357)
.... ..+ .+|++.|.|.+++| .++++|++||.|++||++.. ..+.+
T Consensus 143 a~v~---~~l---------------------------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 143 AYVQ---AEL---------------------------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred cEEE---EEe---------------------------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 7631 111 29999999999999 58999999999999999987 55556
Q ss_pred ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 178 VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
+ .|..+|..+.+-|.|.+++......|++||+-. ..+.+..+..|...|+|+.+..++..|++|+-|+.
T Consensus 193 l--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~---------G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 193 L--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTT---------GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred e--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecC---------CceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 5 899999999999998544445567999999871 33455555569999999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
+++||+.+-+ .+..+ ...++|++++.+++ .++.|..||.+.+-+...
T Consensus 262 VKVfd~t~~K---vv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 262 VKVFDTTNYK---VVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eEEEEccceE---EEEee-ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999976554 33332 36788998888874 999999999888775443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=206.21 Aligned_cols=238 Identities=20% Similarity=0.363 Sum_probs=205.5
Q ss_pred ccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
.+..+.+.+ |...|..++..++. +++++.||++++|+-..++.... ..
T Consensus 4 Y~ls~~l~g---H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~-~~--------------------------- 52 (745)
T KOG0301|consen 4 YKLSHELEG---HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET-HA--------------------------- 52 (745)
T ss_pred ceeEEEecc---CccchheeEecCCeEEeecCCCCceeeeeccCcccccc-ee---------------------------
Confidence 345567777 99999999998887 99999999999999765543321 11
Q ss_pred cccccccEEE-EEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccc
Q 038568 138 WLEHWDAVSD-LVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 138 ~~~~~~~v~~-~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
+.+|.+-|.. +++.+ ..+++|+.|++|.+|...+..++..+ .+|+..|.++....++.+++|+-|.++++|...
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG- 130 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCceEecccccceEEecch-
Confidence 1256666666 77776 56999999999999999999999999 999999999998888889999999999999865
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eE
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LL 292 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l 292 (357)
++...+.+|...|++++.-|++ .+++|+.|.+|++|.-.+ ..+++.+|...|+.++.-++ .+
T Consensus 131 -----------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL~vl~~~~f 193 (745)
T KOG0301|consen 131 -----------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGLAVLDDSHF 193 (745)
T ss_pred -----------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-----hhhhhccchhheeeeEEecCCCe
Confidence 4566689999999999999987 899999999999998742 56788899999999999888 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++++.||.|++|++. + +++.+..+|..-|.++....++. .++|+|.|+++++|+
T Consensus 194 lScsNDg~Ir~w~~~-g---e~l~~~~ghtn~vYsis~~~~~~-------~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDLD-G---EVLLEMHGHTNFVYSISMALSDG-------LIVSTGEDRTLRIWK 247 (745)
T ss_pred EeecCCceEEEEecc-C---ceeeeeeccceEEEEEEecCCCC-------eEEEecCCceEEEee
Confidence 999999999999994 3 77889999999999999777766 999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=191.12 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=202.2
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
.+.+..+.+.+++| |...|+.+.|+ ...+++++.| .|+||.. ........... |.++|+.+..+|++
T Consensus 246 ~d~~s~q~l~~~~G-----h~kki~~v~~~~~~~~v~~aSad~~i~vws~-~~~s~~~~~~~---h~~~V~~ls~h~tge 316 (506)
T KOG0289|consen 246 FDKPSNQILATLKG-----HTKKITSVKFHKDLDTVITASADEIIRVWSV-PLSSEPTSSRP---HEEPVTGLSLHPTGE 316 (506)
T ss_pred EecchhhhhhhccC-----cceEEEEEEeccchhheeecCCcceEEeecc-ccccCcccccc---ccccceeeeeccCCc
Confidence 34455566666665 99999999999 7889999999 9999999 66666666665 99999999999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++++.|++..+.|++++........- ...-.+++.+|+| ..|.+|..|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeec----------------------------cccceeEEeeEcCCceEEeccCCC
Confidence 999999999999999998765544321 1224589999999 778899999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEee-ccccceeE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 239 (357)
|.|++||+.++..+..| .+|.++|..+.|+.+|+ |++++.|+.|++||+| ..+....+. ....++.+
T Consensus 369 ~~vkiwdlks~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR----------Kl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR----------KLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred ceEEEEEcCCccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh----------hhcccceeecccccccee
Confidence 99999999999999999 88999999999999995 9999999999999999 222233332 22347999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
+.|.+.|.+|+.++.|=+|++++-.+ +.......+..|.+...++.|... ++++++.|..++++.+
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999999998887777776443 234456677778888888888765 9999999999888764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=207.26 Aligned_cols=293 Identities=18% Similarity=0.324 Sum_probs=224.3
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEE-ecCc--
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITF-HITK-- 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~-~~~~-- 84 (357)
...++..++. |.++|+.++.. ++.|+++|.| +|++|+. ... -...++.. |...|.|+++ .++.
T Consensus 62 s~~~~asme~-----HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~-~~~~~~c~stir~---H~DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 62 STPYIASMEH-----HSDWVNDIILCGNGKTLISASSDTTVKVWNA-HKDNTFCMSTIRT---HKDYVKCLAYIAKNNEL 132 (735)
T ss_pred ccchhhhhhh-----hHhHHhhHHhhcCCCceEEecCCceEEEeec-ccCcchhHhhhhc---ccchheeeeecccCcee
Confidence 3446788887 99999999988 8899999999 9999999 554 56777887 9999999999 5655
Q ss_pred eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+++||.|+.|.+||++++.. .......+.. ....++...|++++.++ ..+++|+.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~---------------------sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVN---------------------SLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccc---------------------cCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999999998733 1111111100 01127889999999999 58999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
.+.|++||.++++.+..+ .+|...|.++..++|| ++++++.||+|++||+. ...++.++..|...|++
T Consensus 192 ek~lr~wDprt~~kimkL-rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----------qQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKL-RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----------QQRCLATYIVHKEGVWA 260 (735)
T ss_pred ccceEEeccccccceeee-eccccceEEEEEcCCCCeEeecCCCceEEeeecc----------ccceeeeEEeccCceEE
Confidence 999999999999999999 7999999999999999 69999999999999998 67788889999999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceee---
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRC--- 314 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~--- 314 (357)
+..+|+-..+++|+.||.|..=|+++......+.. ...+|..+..+ .+-+-++..|+.|+-|..+-......
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD 337 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence 99999999999999999999999998643323222 33445444444 33557777888888886653210000
Q ss_pred -------------------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 -------------------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 -------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.....| ..+|..-+.-.|.+ .++|=...|.+.+||
T Consensus 338 ~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkR-------hVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 338 LDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKR-------HVLTKDAKGNVALWD 391 (735)
T ss_pred CCcccccCCCccccccCCCceeccC-chhhhhhhhhcCcc-------eEeeecCCCCEEEEE
Confidence 000111 11223333344444 899999999999998
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=188.34 Aligned_cols=300 Identities=19% Similarity=0.223 Sum_probs=216.4
Q ss_pred ccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 29 HMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
+..|.|++|. +.-++||..+ .|.||+. .+.+..+.... |.+.|.++....++ |++|+.|..|..||- .-+..
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~-~~~~~~k~~~a---H~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~ 320 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSK-GTNRISKQVHA---HDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKL 320 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeC-CCceEEeEeee---cCCceEEEEEecCccEeecCccceEEeccc-ccccc
Confidence 4789999999 7889999999 9999999 77666666666 99999999999988 999999999999992 22221
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccc------------cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKK------------RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
+.+ .+|...............+.+....+ .+..+|......++.+| +++++++.|+.+++|+ .
T Consensus 321 r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 321 RET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred ccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence 111 22222222222222222222222222 33468889999999999 8999999999999999 3
Q ss_pred chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.+.+.+ .....+..|+.|+|.|.++.|...|...+.|.+ ....+..-. ...++++++|+|+|.+||.
T Consensus 398 ~k~~wt--~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e----------~~~lv~~~~-d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 398 HKLEWT--KIIEDPAECADFHPSGVVAVGTATGRWFVLDTE----------TQDLVTIHT-DNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred CceeEE--EEecCceeEeeccCcceEEEeeccceEEEEecc----------cceeEEEEe-cCCceEEEEEcCCCCEEEE
Confidence 444444 356788999999999999999999999999987 333333333 3889999999999999999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-----------------------------------------
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----------------------------------------- 290 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------- 290 (357)
|+.|+.|++|.+.......... -..+..+++.+.|+.+
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 9999999999987554332211 1122255566655533
Q ss_pred ---------------------eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC
Q 038568 291 ---------------------LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL 349 (357)
Q Consensus 291 ---------------------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 349 (357)
++|+|.+.|.|++|...-.+.........+|.+.|++++|.-+.. .|.+.+.
T Consensus 544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-------~li~tg~ 616 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-------HLISTGK 616 (626)
T ss_pred EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc-------eEEecCC
Confidence 444444555555555443333455667789999999999998887 7777779
Q ss_pred CCeEEecC
Q 038568 350 NGEIKVWD 357 (357)
Q Consensus 350 dg~v~~wd 357 (357)
|..|..|+
T Consensus 617 D~Si~qW~ 624 (626)
T KOG2106|consen 617 DTSIMQWR 624 (626)
T ss_pred CceEEEEE
Confidence 99999995
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=171.52 Aligned_cols=237 Identities=19% Similarity=0.293 Sum_probs=190.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEecc-CCcc---ccceeccccCCCCceEEEEEecCc------eEEee-cCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLI-SDYS---HVDTFSNDLSSSGSVKSITFHITK------IFTAH-QDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~-~~~~---~~~~~~~~~~~~~~v~~l~~~~~~------l~~~~-~d~~ 93 (357)
|++.|.|.+|+ |++||+|+.| +|++..+. ++.+ .-..|.. |.+.|..++|..+- |++++ .|..
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm---hdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM---HDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee---cCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 99999999999 9999999999 99987762 2222 1234454 99999999998541 55554 3666
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE-EecCeEEEEecCCeEEEEEcCcc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV-VKQGLMYSVSWDRSFKIWNASNY 172 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iwd~~~~ 172 (357)
|.+-|-..++....+. +|.+.|.++- |+.-++++|+.|.+|++||++-.
T Consensus 165 iy~tdc~~g~~~~a~s------------------------------ghtghilalyswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALS------------------------------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred EEEeecCCCCcceeec------------------------------CCcccEEEEEEecCcEEEccCCCceEEEEeeecc
Confidence 7777777776544433 8999998874 55599999999999999999988
Q ss_pred hhhhhcccc------ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 173 KCLESVNKA------HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 173 ~~~~~~~~~------~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
.++.++... ....|.++++.|.|+ |++|-.|....+||++ ...+++.+..|...|.++.|+|.
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir----------g~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----------GGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee----------CCceeeeeCCCccceeEEEeCCC
Confidence 888776311 236799999999995 8888999999999999 67788999999999999999999
Q ss_pred CCEEEEEecCCeEEEEecccCCc-eeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 246 GSLLFSGGCDRWIVVWERERDHR-MVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..++++++.|..|++-|++..-. ...+.....|+..+..+.|++. .+++.+.|.++.+|-+.
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999974321 1123344568888999999988 78899999999999764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=206.31 Aligned_cols=303 Identities=15% Similarity=0.237 Sum_probs=239.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+..+.+.+.++++ +...|+++.-+ =+.+|.|..+ +|.|+++ ..++.+.+|+. ..++|++++|..|+
T Consensus 188 Nvrt~K~v~~f~~-----~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl-K~dkil~sFk~---d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 188 NVRTGKVVYTFQE-----FFSRITAIEQSPALDVVAIGLENGTVIIFNL-KFDKILMSFKQ---DWGRVTSLSFRTDGNP 258 (910)
T ss_pred EeccCcEEEEecc-----cccceeEeccCCcceEEEEeccCceEEEEEc-ccCcEEEEEEc---cccceeEEEeccCCCe
Confidence 4467788888886 89999999998 7899999999 9999999 99999999993 35999999999887
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++|+..|.+.+||++..+....+.. .|.+.|....|.+ ..+++++.|
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~n-----------------------------ah~~sv~~~~fl~~epVl~ta~~D 309 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRN-----------------------------AHYGSVTGATFLPGEPVLVTAGAD 309 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeec-----------------------------cccCCcccceecCCCceEeeccCC
Confidence 88888899999999998776554443 7888999999999 899999999
Q ss_pred CeEEEEEcCcch---hhhhccccccccEEEEEEe-cCC-eEEEEeCCCeEEEEEccccccccccc---------------
Q 038568 162 RSFKIWNASNYK---CLESVNKAHEDAVNAVVVS-DNG-VVYTGSADGRIRVWERSVVDHNKERK--------------- 221 (357)
Q Consensus 162 g~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------- 221 (357)
+.+++|=..++. .+..+..+|..+..++.|. .++ .+.+++.|++.+.+++......++..
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 999998665433 2223337899999999998 455 48999999999888875332110000
Q ss_pred ----------------------------------------cceee-eeE-----eeccccceeEEEEecCCCEEEEEecC
Q 038568 222 ----------------------------------------SRHML-VTT-----LVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 222 ----------------------------------------~~~~~-~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
..... ... ++.....+++++.++.|++.+.|+..
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~ 469 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK 469 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC
Confidence 00000 000 11122568899999999999999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc----------------------
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC---------------------- 311 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~---------------------- 311 (357)
|.|-+|+++++-....+..-..|..+|+.++.++. .+++++.+|.+++||..+...
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 99999999998754444334689999999998875 899999999999999876431
Q ss_pred ----------------eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 ----------------YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+.+..+.+|.+.|++++|+||++ +|++++.|++||+||
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-------WlisasmD~tIr~wD 604 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR-------WLISASMDSTIRTWD 604 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc-------EEEEeecCCcEEEEe
Confidence 122344678999999999999999 999999999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=191.20 Aligned_cols=271 Identities=18% Similarity=0.271 Sum_probs=207.7
Q ss_pred eEEEeeCC--ceEEEeccCCccccceeccccCCCCceEEE-EEecCceEEe-ecCCeEEEEecCCccceeeeeecCcccc
Q 038568 41 LLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSVKSI-TFHITKIFTA-HQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.+.+++.| .+.+||+ .++.....+++.. ...-.++ +..+..++++ .....+.+|.+..........
T Consensus 9 ~~sssS~d~~~~~~~dl-~TGt~~~~ykg~~--~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------- 78 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDL-RTGTSLLQYKGSY--LAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------- 78 (476)
T ss_pred EEeccCCCCcceeEEec-CCCceeEEecCcc--cccchhhhhhchhheeeecccCccccccccCchhhhhhhc-------
Confidence 34455667 7999999 9998888888621 1222222 2334454444 445679999997665443111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
--.++|.+++-+| .+++.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.|
T Consensus 79 -----------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 79 -----------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD 134 (476)
T ss_pred -----------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC
Confidence 2347899999999 55666669999999999999999999 999999999999999
Q ss_pred C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEEEecCCeEEEEecccCCceee
Q 038568 195 G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 195 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
+ .|++|+.||.|.+|++...-.... .....+...+..|.-+|+.+...+.| .+|++++.|.++++||+..+..+..
T Consensus 135 gs~iiTgskDg~V~vW~l~~lv~a~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 135 GSHIITGSKDGAVLVWLLTDLVSADN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred CcEEEecCCCccEEEEEEEeeccccc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence 9 699999999999999863322211 12567888999999999999987753 5899999999999999998864432
Q ss_pred eeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc-------------ceeeeeeecCCcC--ceEEEEEeeCC
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN-------------CYRCMAFLEGHEK--PVKSLVAISSS 334 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~-------------~~~~~~~~~~h~~--~v~~~~~~~~~ 334 (357)
+. ....+.+++.+|. .++.|+++|.|.+.++.+-. ....+..+.+|.+ +|+|++.+.|+
T Consensus 214 i~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 214 IT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred Ee----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 22 3456777777765 99999999999998876432 1234566788988 99999999999
Q ss_pred CCCCCCeEEEEEcCCCCeEEecC
Q 038568 335 SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. +|++|+.||+|+|||
T Consensus 290 t-------lLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 290 T-------LLLSGDEDGKVCVWD 305 (476)
T ss_pred c-------EEEeeCCCCCEEEEe
Confidence 9 999999999999998
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=198.40 Aligned_cols=281 Identities=17% Similarity=0.272 Sum_probs=221.9
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
.+.+.+|. |..-|.++..+ .++++||+...|+|||+...+ .++..+... .....|.++...||+ |++
T Consensus 410 arq~~tL~------HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 410 ARQINTLA------HGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred HHhhhhhc------cCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEe
Confidence 44566676 99999999999 889999998899999993221 223333221 156789999999997 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
|+.-.++.|||+........... ....-...+++.+| +..+++..||.|.
T Consensus 483 GGeastlsiWDLAapTprikael----------------------------tssapaCyALa~spDakvcFsccsdGnI~ 534 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAEL----------------------------TSSAPACYALAISPDAKVCFSCCSDGNIA 534 (705)
T ss_pred ccccceeeeeeccCCCcchhhhc----------------------------CCcchhhhhhhcCCccceeeeeccCCcEE
Confidence 99999999999987653211111 02234567788888 8899999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
|||+.+...+..| .+|.+.+.||.++++| +|-+|+-|.+||.||++ ++ ..+.. ....+.|.++.++|
T Consensus 535 vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlr------eg----rqlqq-hdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 535 VWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR------EG----RQLQQ-HDFSSQIFSLGYCP 602 (705)
T ss_pred EEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhh------hh----hhhhh-hhhhhhheecccCC
Confidence 9999999999999 9999999999999999 59999999999999998 21 11111 12357899999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
++.+|++|-.++.+.|......+. ..+.-|...|+++.|. ++++++.+.|+.+..|...-+ ..+...+ -.
T Consensus 603 ~~dWlavGMens~vevlh~skp~k----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~ 674 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSKPEK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ES 674 (705)
T ss_pred CccceeeecccCcEEEEecCCccc----eeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-cc
Confidence 999999999999999988876543 3445688999888775 569999999999999999877 3333333 35
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++|.++..+.|.+ +++||+.|....+|
T Consensus 675 SsVlsCDIS~ddk-------yIVTGSGdkkATVY 701 (705)
T KOG0639|consen 675 SSVLSCDISFDDK-------YIVTGSGDKKATVY 701 (705)
T ss_pred CcceeeeeccCce-------EEEecCCCcceEEE
Confidence 7899999999998 99999999887776
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-27 Score=177.04 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=187.9
Q ss_pred ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
.++.+.|.. ....|+++.|++++ +++++.|.++++||..++++.+.+.
T Consensus 4 ~~~ak~f~~---~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------- 53 (311)
T KOG1446|consen 4 FRPAKVFRE---TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------- 53 (311)
T ss_pred ccccccccc---CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------
Confidence 455666765 78899999999998 8888999999999999998776665
Q ss_pred ccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEc
Q 038568 137 LWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~ 211 (357)
.+.-.+..++|.. +.++.++. |.+|+..++.+.+.++.+ .+|...|++++.+|-+ .+++++.|++|++||+
T Consensus 54 ---skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 54 ---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL 129 (311)
T ss_pred ---cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence 3344566666665 66666666 889999999999999999 9999999999999977 7999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC-c-eeeeeeccCCccceEEEeecC
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH-R-MVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~-~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+ ..++...+. ...-..++|+|+|-++|++...+.|++||++.-. . ...+....+.......+.|++
T Consensus 130 R----------~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 130 R----------VKKCQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP 197 (311)
T ss_pred c----------CCCCceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC
Confidence 8 222222222 2233458999999999999988899999998642 2 112222223455667777776
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc---eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP---VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ +|+.+...+.+++.|.-+|. ....+.++... -.+.+|.||++ ++++|+.||+|.+|+
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds~-------Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDSK-------FVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCCCc-------EEEEecCCCcEEEEE
Confidence 6 88888999999999999984 44444444332 25778999999 999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=177.03 Aligned_cols=227 Identities=15% Similarity=0.169 Sum_probs=190.2
Q ss_pred eccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc
Q 038568 65 FSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW 142 (357)
Q Consensus 65 ~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (357)
+++ |+.+++.+.|+.++ |++++.|.+..||--.+++.+... .+|.
T Consensus 6 l~G---HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty------------------------------~GHt 52 (327)
T KOG0643|consen 6 LQG---HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY------------------------------DGHT 52 (327)
T ss_pred ccc---CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee------------------------------cCCC
Confidence 455 99999999999887 999999999999998777655433 3999
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeC------CCeEEEEEcccc
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA------DGRIRVWERSVV 214 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~ 214 (357)
+.|+|+..+. +.+++|+.|.++++||+++|+++..+ ....+|..+.|+++|.++..+. .+.|.++|++..
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 9999999888 99999999999999999999999998 6788999999999995444433 367899999843
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
.... ....+...+..+.+.++.+-|.|-+++|++|.+||.|.+||++++.+ .+.....|...|+.+.++++ ++
T Consensus 131 ~~~~---~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 131 SSDI---DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred hhhh---cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceE
Confidence 3221 13345666777889999999999999999999999999999999875 44555668889999999888 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++++.|.+-++||+++- ..++++. -..||++.+++|...
T Consensus 206 iT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAAISPLLD 244 (327)
T ss_pred EecccCccceeeeccce---eeEEEee-ecccccceecccccc
Confidence 99999999999999985 5555554 467999999999876
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=198.59 Aligned_cols=235 Identities=21% Similarity=0.287 Sum_probs=201.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
+...|+++.|+ |++||+|..+ .|.|||. ...+.+..+.+ .|...|-+++|....+.+|+.|+.|..+|++..+.
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~-~~~k~~~~~~~--~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDV-KEQKKTRTLRG--SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEeh-hhccccccccC--CcCceeEEEeccCceEEEecCCCcEEEEEEecchh
Confidence 46899999999 9999999999 9999999 77777877775 38999999999988899999999999999988764
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
... . +.+|...|..+.|++ .++|+|+.|+.+.|||....+++..+ ..|
T Consensus 293 ~~~--~---------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-~~H 342 (484)
T KOG0305|consen 293 VVS--T---------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-TEH 342 (484)
T ss_pred hhh--h---------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-ecc
Confidence 433 1 238999999999999 99999999999999999888888888 899
Q ss_pred cccEEEEEEecCC--eEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE--ecCC
Q 038568 183 EDAVNAVVVSDNG--VVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG--GCDR 256 (357)
Q Consensus 183 ~~~v~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg 256 (357)
...|.+++|+|-. .||+|+ .|+.|++||.. ....+.... ..+.|..|.|++..+.|+++ ..++
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----------~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----------TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----------CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999954 688765 59999999987 344444443 46789999999988766664 4577
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
.|.||+..+.. ....+.+|...|..++++|+ .+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccc---eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89999998755 56778899999999999887 9999999999999999764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=178.39 Aligned_cols=234 Identities=15% Similarity=0.263 Sum_probs=184.0
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+....|.++.|+|.. |+.++.||++++||+...+....+ .|..++.+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-------------------------------~~~~plL~ 59 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-------------------------------KHGAPLLD 59 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-------------------------------ecCCceee
Confidence 367899999999765 888999999999999877543333 78899999
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-CeEEEEeCCCeEEEEEcccccccccccccee
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-GVVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
++|.+ ..+++|+.||.|+.+|+++++.... ..|..++.|+...+. +.+++|+-|++|++||.+ ...
T Consensus 60 c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R----------~~~ 127 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR----------NKV 127 (323)
T ss_pred eeccCCceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeeccCCeEEEcccCccEEEEecc----------ccc
Confidence 99999 9999999999999999998776544 589999999999974 479999999999999998 122
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
....+. ....|.++... ++.|++|+.|..+.+||+++...... .....-+..+.|++..|+ -+++++-||.|.+
T Consensus 128 ~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 128 VVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 222222 23478888765 66899999999999999998765432 223345566788887774 8889999999988
Q ss_pred eeCCCCc-ceeeeeeecCCc---------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKEN-CYRCMAFLEGHE---------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~-~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
=.++..+ .......++.|. -||++|+|+|-.. .|+|||.||.|.+||
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-------tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-------TFATGGSDGIVNIWD 260 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-------eEEecCCCceEEEcc
Confidence 6665531 112234455554 3899999999977 899999999999998
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=191.00 Aligned_cols=243 Identities=16% Similarity=0.281 Sum_probs=198.1
Q ss_pred cccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
.....|+.+++. |.+.|..|++....+++++.| +|+.|.. +. .+++++. ....+..|.-+... ++|
T Consensus 96 lsqR~~~~~f~A-----H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~-~~-~p~~til----g~s~~~gIdh~~~~~~FaT 164 (433)
T KOG0268|consen 96 LSQRECIRTFKA-----HEGLVRGICVTQTSFFTVGDDKTVKQWKI-DG-PPLHTIL----GKSVYLGIDHHRKNSVFAT 164 (433)
T ss_pred hhhhhhhheeec-----ccCceeeEEecccceEEecCCcceeeeec-cC-Ccceeee----ccccccccccccccccccc
Confidence 345677888887 999999999998888888999 9999998 54 5777776 45566777766433 888
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSF 164 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 164 (357)
+|. .|.|||......+..+. -..+.|.++.|+| ..|++++.|+.|
T Consensus 165 cGe--~i~IWD~~R~~Pv~sms------------------------------wG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 165 CGE--QIDIWDEQRDNPVSSMS------------------------------WGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cCc--eeeecccccCCccceee------------------------------cCCCceeEEecCCCcchheeeeccCCce
Confidence 876 59999998766555443 3457899999999 889999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
.+||+++..++..+ ......+.|+|+|++. |++|..|..++.||++ ....++....+|.+.|.+++|+
T Consensus 213 vLyD~R~~~Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR---------~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 213 VLYDLRQASPLKKV--ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR---------NLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred EEEecccCCcccee--eeeccccceecCccccceeeccccccceehhhh---------hhcccchhhcccceeEEEeccC
Confidence 99999999999887 5566778999999775 9999999999999998 2456777888999999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
|.|+-+++|+.|.+|+||..+.+.......+ .....|.|+.|+-+ ++++|++|+.|++|.....
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 9999999999999999999987654322221 12345888888766 9999999999999987653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=191.38 Aligned_cols=277 Identities=16% Similarity=0.231 Sum_probs=219.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~ 103 (357)
-..+|.|+||+ .+.||.+-.+ .|.||++....-....+.+ +....|.+++|++++ |++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g--~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG--PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec--CCCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence 56889999999 7789999999 9999999555555556665 467899999999776 9999999999999999988
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc-c
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-K 180 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 180 (357)
....+. ...+.|++++.+| ..++.|+.||.+..++...++...... .
T Consensus 102 ~~~~~d------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 102 QKYNID------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eeEEec------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 665554 4457999999999 889999999988888887766544321 4
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceee---eeEeec-cccceeEEEEecCCCEEEEEecC
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHML---VTTLVK-HRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
...+.+.++.|+|++. ++.|+.||.|++||....+. .... +..+.. ...-|+++.|-.++ .|++|..-
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t------~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~ 224 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT------LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA 224 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCce------EEEeeecccccccCCceEEEEEEEeecC-cEEEecCC
Confidence 4568999999999995 99999999999999983221 1111 111111 23347788877554 79999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc-eeeeeeecCCcCceEEEEEee
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC-YRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~ 332 (357)
|+|.+||...+. .++.+..|...|.+++..++ ++++++.|+.|..|...+.+. +........|...|.+++..+
T Consensus 225 G~V~FWd~~~gT---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 225 GTVTFWDSIFGT---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred ceEEEEcccCcc---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999999887 55677789999999887665 999999999999998876532 445566778999999999998
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEe
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+ .+++||.|..+.+
T Consensus 302 ~---------~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 302 N---------ALISGGRDFTLAI 315 (691)
T ss_pred c---------eEEecceeeEEEE
Confidence 8 7999999998764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=177.59 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=178.4
Q ss_pred cCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccE
Q 038568 69 LSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145 (357)
Q Consensus 69 ~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (357)
.+....|.+|+|+|.. +++++.|++||+|+++....... + ....|.++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-k---------------------------a~~~~~~Pv 75 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-K---------------------------AQQSHDGPV 75 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-h---------------------------hhhccCCCe
Confidence 3578899999999932 66899999999999986422111 1 112789999
Q ss_pred EEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEcccccccccc
Q 038568 146 SDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 146 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
.+++|+. ..+++|+.|+.+++||+.+++. ..+ ..|..+|..+.|-+.. .|++|+-|.+|+.||.|
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-------- 145 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-------- 145 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCe-eee-eecccceeEEEEecCCCcceeEecccccceeecccC--------
Confidence 9999999 8999999999999999999954 445 6899999999998765 39999999999999998
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCC
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSAD 298 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 298 (357)
...++..+. ....++++..- ..+++++..++.|.+|+++.+.... ......-+-.++|++.. .+..+.|+-+
T Consensus 146 --~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~-k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 146 --SSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF-KRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred --CCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh-hhhcCcccceeeEEEEEecCCceEeeeec
Confidence 344555444 34566766654 3478888999999999997654211 11111123345566544 4477999999
Q ss_pred CeEEEeeCCCCcceeeeeeecCCc---------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 299 RTVRIWQRGKENCYRCMAFLEGHE---------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 299 g~i~vw~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|.+.+..+..+.+ ..-..++-|. -+|++|+|+|... .|+|+|.||+..+||
T Consensus 220 Grv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-------tlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 220 GRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-------TLVTAGSDGTFSFWD 279 (347)
T ss_pred ceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccc-------eEEEecCCceEEEec
Confidence 9999999987533 3333445454 2588999999887 999999999999998
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=183.61 Aligned_cols=250 Identities=17% Similarity=0.295 Sum_probs=206.1
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEecc-----CC------------------------
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLI-----SD------------------------ 58 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~-----~~------------------------ 58 (357)
..++.|+.++.+ |.+.|++++|+ +.++++++.| +..||... ..
T Consensus 177 ~Esg~CL~~Y~G-----H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 177 LESGACLATYTG-----HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred eccccceeeecc-----cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 346888888887 99999999999 8999999999 99999831 00
Q ss_pred ----------ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC
Q 038568 59 ----------YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 59 ----------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
..++..|.+ |.+.|.+..|...+ +++++.|.+..+||+++++....+.
T Consensus 252 ~~~~sD~~tiRvPl~~ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt----------------- 311 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT----------------- 311 (481)
T ss_pred cccccCCceeeeeeeeeec---cccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-----------------
Confidence 012334444 89999999998765 9999999999999999998765554
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-hhhhhccccccccEEEEEEecCCeEEEEeCC
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-KCLESVNKAHEDAVNAVVVSDNGVVYTGSAD 203 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 203 (357)
+|....+.++-+| .++++.+.|.+.++||++.. ..+..| .+|...|++..|..+..+++|+.|
T Consensus 312 -------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~dd~vVSgSDD 377 (481)
T KOG0300|consen 312 -------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTDDRVVSGSDD 377 (481)
T ss_pred -------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecCCceeecCCC
Confidence 9999999999999 88899999999999999843 234455 899999999999999999999999
Q ss_pred CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee-eeeccCCccce
Q 038568 204 GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF-AEALWGHTGAL 282 (357)
Q Consensus 204 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v 282 (357)
.+|++||++. ...++..+. ..++++.++.+..+..++.--.+..|++||++..+.... ...-.+|...|
T Consensus 378 rTvKvWdLrN---------MRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 378 RTVKVWDLRN---------MRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ceEEEeeecc---------ccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 9999999982 334555555 467899999999888999999999999999986543222 22446899999
Q ss_pred EEEeecCc----eEEEecCCCeEEEeeCCCC
Q 038568 283 LCLINVGD----LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 283 ~~~~~~~~----~l~~~~~dg~i~vw~~~~~ 309 (357)
.|++|..+ -|++++.|..+.=|.+..+
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEeccc
Confidence 99999876 7889999999999998865
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=204.23 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=196.2
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC---ccccceeccccCCCCceEEEEE
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD---YSHVDTFSNDLSSSGSVKSITF 80 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~l~~ 80 (357)
.+.....+|...++.-+- -.-.+..+.|. .++|||++.. .|.+||+ .. .+.+..|.. |+..++++.|
T Consensus 68 ~~~~~~~~~~~~~k~kqn--~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl-nk~~rnk~l~~f~E---H~Rs~~~ldf 141 (839)
T KOG0269|consen 68 NPNDFSEKCNHRFKTKQN--KFYSAADVKWGQLYSNLIATCSTNGVISVWDL-NKSIRNKLLTVFNE---HERSANKLDF 141 (839)
T ss_pred CcccCCcceeeecccccc--eeeehhhcccccchhhhheeecCCCcEEEEec-CccccchhhhHhhh---hccceeeeee
Confidence 334444444444443111 22345567776 8899999999 9999999 44 456667877 9999999999
Q ss_pred ecC---ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---Ce
Q 038568 81 HIT---KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GL 154 (357)
Q Consensus 81 ~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 154 (357)
++. .|++|+.||+|++||++..+...... +....|.++.|+| ..
T Consensus 142 h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~------------------------------~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 142 HSTEPNILISGSQDGTVKCWDLRSKKSKSTFR------------------------------SNSESIRDVKFSPGYGNK 191 (839)
T ss_pred ccCCccEEEecCCCceEEEEeeeccccccccc------------------------------ccchhhhceeeccCCCce
Confidence 964 49999999999999999876543332 5667899999999 89
Q ss_pred EEEEecCCeEEEEEcCcch-hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 155 MYSVSWDRSFKIWNASNYK-CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
++++...|.+++||++... +...+ .+|.++|.|+.|+|++ +|++|+.|+.|+|||+.. ....+...+.
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~--------~~~~~~~tIn- 261 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD--------SRAKPKHTIN- 261 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccC--------CCccceeEEe-
Confidence 9999999999999999754 55566 8999999999999987 699999999999999861 1122222222
Q ss_pred cccceeEEEEecCCC-EEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeC
Q 038568 233 HRSTVNALALNGDGS-LLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQR 306 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~-~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~ 306 (357)
...+|.++.|-|... .|++++. |-.|+|||++.... +...+..|...++.++|... .+.+++.||+|..-.+
T Consensus 262 Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 262 TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 457899999999655 5666654 77899999986543 56778889999999999762 8999999999877666
Q ss_pred CCC
Q 038568 307 GKE 309 (357)
Q Consensus 307 ~~~ 309 (357)
++.
T Consensus 340 kna 342 (839)
T KOG0269|consen 340 KNA 342 (839)
T ss_pred hcc
Confidence 554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=195.81 Aligned_cols=290 Identities=20% Similarity=0.268 Sum_probs=206.6
Q ss_pred CccceeE--EEEe-----cceEEEeeCC-ceEEEeccCCcccc---ceeccccCCCCceEEEEEecCc--eEEeecCCeE
Q 038568 28 HHMIISC--LAVH-----NSLLYAASLN-EINVFDLISDYSHV---DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKI 94 (357)
Q Consensus 28 h~~~i~~--~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i 94 (357)
|.-++.- ..|+ ...||.+.+| .|.++|. ...... +.|.....|...|.++.|.|.. |++++.|.++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt-~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDT-KSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecc-hhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 4445554 4555 5689999999 9999998 542211 2233333499999999999954 9999999999
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 171 (357)
++||+.+.+....- .+.+|...|.+++|.+ ..|++|+.||.|.|||++.
T Consensus 125 r~Wdvk~s~l~G~~----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGR----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred eeeeeccceeecce----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 99999987654331 2239999999999999 8899999999999999874
Q ss_pred ch--hhhhc----c--------------------ccccc----cEEEEEEecCCeEEEEeC-CCeEEEEEcccccccccc
Q 038568 172 YK--CLESV----N--------------------KAHED----AVNAVVVSDNGVVYTGSA-DGRIRVWERSVVDHNKER 220 (357)
Q Consensus 172 ~~--~~~~~----~--------------------~~~~~----~v~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~ 220 (357)
.. ....+ . ..+.. .|+.+.|-.+..|++++. |+.|++||++........
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 32 10000 0 12222 245566655557888887 999999999944332111
Q ss_pred ccceeeeeEeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---e-EEEeecCceEE
Q 038568 221 KSRHMLVTTLVKH---RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---L-LCLINVGDLLA 293 (357)
Q Consensus 221 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v-~~~~~~~~~l~ 293 (357)
. ......+..| ...+.++..+..|.+|++.+.|+.|+.|++.+...- +...+.++... + .++.+++.+++
T Consensus 257 e--p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 257 E--PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred C--CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEe
Confidence 1 1111112222 345777888888899999999999999999865422 33333333322 2 44566777999
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+.|...++|.+.+.+ .....+.+|...|++++|.|... .-++|+++|-.+++|+
T Consensus 334 SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~------t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSAT------TPVATCSDDFRVKIWR 389 (720)
T ss_pred ccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccC------CCceeeccCcceEEEe
Confidence 99999999999999874 56777899999999999998754 2578889999999996
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=178.81 Aligned_cols=302 Identities=17% Similarity=0.258 Sum_probs=219.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-------cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-------NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHI 82 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-------~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~ 82 (357)
+.+++...++. + |+.+|..++|+ ...+|+++.+.+.+|+...++ ..++.+... .|.+....++|+-
T Consensus 25 ~~yk~t~~l~e--d--~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcsw~y 99 (385)
T KOG1034|consen 25 RSYKYTNHLKE--D--HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCSWSY 99 (385)
T ss_pred cceEeeeehhc--c--CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCC-CCCcceEEEEEEe
Confidence 44555555552 4 99999999998 467888887788999883333 344444432 3788889999984
Q ss_pred C---c---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---C
Q 038568 83 T---K---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---G 153 (357)
Q Consensus 83 ~---~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 153 (357)
+ + ++.++.-|.|+|.|+.+++....+. +|...|+.+.+.| +
T Consensus 100 d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~------------------------------ghG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 100 DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR------------------------------GHGGSINEIKFHPDRPQ 149 (385)
T ss_pred cCCCCCeeEEeecceeEEEEEecchhhhcccee------------------------------ccCccchhhhcCCCCCc
Confidence 3 2 8888899999999999887665544 8999999999999 6
Q ss_pred eEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc------------
Q 038568 154 LMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK------------ 218 (357)
Q Consensus 154 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~------------ 218 (357)
+++++|.|..|++||+++..++..+- .+|...|.++.|++++ +|++++.|.++++|++...+...
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 99999999999999999999988773 5789999999999999 79999999999999997322110
Q ss_pred ccc------cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc-cCCc----------eeeeeeccCCccc
Q 038568 219 ERK------SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHR----------MVFAEALWGHTGA 281 (357)
Q Consensus 219 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~----------~~~~~~~~~~~~~ 281 (357)
+.. .......+-..|...|-|+.|- |+++++-+.++.|..|..- -.+. ...+..+.-....
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 000 0000111334577888888886 5699999999999999882 1111 1112222222333
Q ss_pred eE--EEeecC--ceEEEecCCCeEEEeeCCCCcceeee-eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 282 LL--CLINVG--DLLASGSADRTVRIWQRGKENCYRCM-AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 282 v~--~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+. .+++++ ++||.|...|.|.+||+++.++..+- .........|...+|+.|+. +|+...+|++|.-|
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-------~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-------ILVLVCDDGTVWRW 380 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-------EEEEEeCCCcEEEE
Confidence 33 334444 49999999999999999986543211 11222346799999999998 99999999999998
Q ss_pred C
Q 038568 357 D 357 (357)
Q Consensus 357 d 357 (357)
|
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
Confidence 7
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=193.70 Aligned_cols=246 Identities=17% Similarity=0.257 Sum_probs=181.8
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|...|.++++.|.+ |++|+.|.+|++||+..... .+.++.+. ......|.+
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--------------------------P~E~h~i~s 219 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--------------------------PCETHQINS 219 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--------------------------cccccccce
Confidence 88899999999988 99999999999999976432 11122111 245568999
Q ss_pred EEEec--CeEEEEecCCeEEEEEcCcchh---------hhhc--cccccccEEEEEEecCC--eEEEEeCCCeEEEEEcc
Q 038568 148 LVVKQ--GLMYSVSWDRSFKIWNASNYKC---------LESV--NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERS 212 (357)
Q Consensus 148 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~---------~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~ 212 (357)
++|++ +.|++.+.....+++|-...+. +..+ ..+|...++|.+|+|.. .+++++.||++|+||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 99999 8888888888999999543222 1111 26788999999999988 49999999999999998
Q ss_pred ccccccccccceeeeeE--eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc--ceEEEeec
Q 038568 213 VVDHNKERKSRHMLVTT--LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG--ALLCLINV 288 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~ 288 (357)
.. ....+.+.. ..+..-+++.++|+++++.+|+|+.||.|.+|+............-..|.. .|+|+.|+
T Consensus 300 ~~------k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 300 NT------KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred Cc------hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 32 212222221 123456789999999999999999999999999865443333344456766 88999887
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCC------CCeEEecC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSL------NGEIKVWD 357 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~------dg~v~~wd 357 (357)
.+ +|++-+.|+++++||+++.+ +++....+ ..-+-+.++|+|+.+ +|+||.. .|.+.+||
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd~k-------li~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPDDK-------LILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cccchhhhccCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCCce-------EEEecccccCCCCCceEEEEe
Confidence 66 99999999999999999864 44444333 234567899999998 8888863 34555554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-26 Score=181.47 Aligned_cols=281 Identities=15% Similarity=0.242 Sum_probs=218.3
Q ss_pred CccceeEEEEe----cceEEEee--CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH----NSLLYAAS--LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s----~~~l~t~~--~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
....|+|++|+ |.+|+.-. .+ .+.+||. +.+........ .++.|....|+|.. |+.....+.+.+|+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~---sne~v~~a~FHPtd~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCGKGHLYFWT 228 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCccee---ccceEEEEEeccCCCcEEEEeCCceEEEEE
Confidence 66789999999 67776654 44 8999999 77777777766 77889999999965 44444558999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
++.+...+....+.. .....|.|++|.+ .-+++|..+|.|.||+..+.+..+.
T Consensus 229 ~~~~~l~k~~~~fek--------------------------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEK--------------------------REKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred ccCCceEEEeecccc--------------------------ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE
Confidence 998877666655542 2236799999999 8999999999999999988888888
Q ss_pred ccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccc--c----------------------------cceeee
Q 038568 178 VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKER--K----------------------------SRHMLV 227 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~----------------------------~~~~~~ 227 (357)
. ..|.+.|.+++...+|.|++|+.|+.|..||-......+.. + ......
T Consensus 283 ~-~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 V-HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred e-eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 7 59999999999999999999999999999993221111000 0 011112
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeC
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQR 306 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~ 306 (357)
....+|......++.+|+...+++++.|+.+++|+ ..+. ..... -..++.|+.|+|. .+|.|...|...+.|.
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~--~wt~~--~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL--EWTKI--IEDPAECADFHPSGVVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce--eEEEE--ecCceeEeeccCcceEEEeeccceEEEEec
Confidence 23456778889999999999999999999999999 2222 11222 2455677777766 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++. ..+..... +.+++.+.|+|++. +||.|+.|+.|.+|
T Consensus 436 e~~---~lv~~~~d-~~~ls~v~ysp~G~-------~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 436 ETQ---DLVTIHTD-NEQLSVVRYSPDGA-------FLAVGSHDNHIYIY 474 (626)
T ss_pred ccc---eeEEEEec-CCceEEEEEcCCCC-------EEEEecCCCeEEEE
Confidence 984 33433333 88999999999999 99999999999987
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=177.94 Aligned_cols=245 Identities=20% Similarity=0.383 Sum_probs=196.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc---cccceeccccCCCCceEEEEEecCc--e
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY---SHVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
...+++|-. |.+.|+++.|. ...|++|+.| +|++||+ ... +..+.|+ ...+|.+|.|+|.+ |
T Consensus 162 hPvIRTlYD-----H~devn~l~FHPre~ILiS~srD~tvKlFDf-sK~saKrA~K~~q----d~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 162 HPVIRTLYD-----HVDEVNDLDFHPRETILISGSRDNTVKLFDF-SKTSAKRAFKVFQ----DTEPVRSISFHPSGEFL 231 (430)
T ss_pred CceEeehhh-----ccCcccceeecchhheEEeccCCCeEEEEec-ccHHHHHHHHHhh----ccceeeeEeecCCCceE
Confidence 356667765 99999999999 8899999999 9999999 442 2334454 67899999999988 8
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
+.|..-.++++||+++-+........ ..|.+.|+++.+++ ++.++++.||.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd---------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPD---------------------------DQHTGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcc---------------------------cccccceeEEEecCCccEEEEeccCCc
Confidence 88888899999999987654333221 28999999999999 89999999999
Q ss_pred EEEEEcCcchhhhhcccccc-ccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-----ccc
Q 038568 164 FKIWNASNYKCLESVNKAHE-DAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-----RST 236 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 236 (357)
|++||--+++|+.++...|. ..|.+..|..++ ++++.+.|..+++|.+. ...++..+.+. ..-
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~----------t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS----------TGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec----------CCceEEEEecCCcccchhh
Confidence 99999999999999977775 478889999999 59999999999999998 34455544432 111
Q ss_pred eeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 237 VNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
-+...|+....+++.-.+ .+.+.-||.++..+... ...+|.+.+.++..+|. .+++|+.|..+|+|--+
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 234567777777776654 56799999998876433 23489999999999887 89999999999999654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=182.82 Aligned_cols=291 Identities=17% Similarity=0.220 Sum_probs=207.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe---c-ceEEEeeCC-ceEEEeccCC----ccccceeccccCCCCceEEEEEec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH---N-SLLYAASLN-EINVFDLISD----YSHVDTFSNDLSSSGSVKSITFHI 82 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s---~-~~l~t~~~d-~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~ 82 (357)
.........+. |.+.|++++|. . +++|+|... +|-+||+ .+ ...+..+.. |..+|.+|.|+|
T Consensus 174 ~~~~~~~v~kv-----~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~-~~~~~d~d~v~~f~~---hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 174 DDYRILNVAKV-----TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNF-GTQEKDKDGVYLFTP---HSGPVSGLKFSP 244 (498)
T ss_pred ccceecceeEe-----cccceEEEEecccCcceEEEEccCCCcEEEEec-CCCCCccCceEEecc---CCccccceEecC
Confidence 34445555665 88999999999 3 678888877 9999999 42 223344554 999999999998
Q ss_pred Cc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE
Q 038568 83 TK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 83 ~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
.. +++.+.||+|+.-|++.......+..- .....+.++.|+. ..++.
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~----------------------------~d~~~fs~~d~~~e~~~vl~ 296 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD----------------------------TDNIWFSSLDFSAESRSVLF 296 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcC----------------------------ccceeeeeccccCCCccEEE
Confidence 64 999999999999999876432222110 1234566777777 66667
Q ss_pred EecCCeEEEEEcCcchh-hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 158 VSWDRSFKIWNASNYKC-LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
+..=|...+||.+++.. ...+ .-|...|..++++|.. .|++++.|++++|||++.... ...+......|.
T Consensus 297 ~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~------K~sp~lst~~Hr 369 (498)
T KOG4328|consen 297 GDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG------KASPFLSTLPHR 369 (498)
T ss_pred eecccceEEEEeecCCccchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcC------CCCcceeccccc
Confidence 77667999999998765 4444 6788899999999977 599999999999999994332 222344556799
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecc----cCCceeeeeeccCCccc--eEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERE----RDHRMVFAEALWGHTGA--LLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
..|.+..|+|.+..|++.+.|..|+|||.. .......+..-..+... .....|+|+ ++++|..-..|-|+|-
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 999999999988779999999999999984 22221122111111111 233467776 8999999999999998
Q ss_pred CCCcceeeeeeecCCcC-ceEEE-EEeeCCCCCCCCeEEEEEcC-CCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEK-PVKSL-VAISSSSSASNGIVSIGSGS-LNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~~~~~~~~l~s~~-~dg~v~~w 356 (357)
+.+ +.+..+..... .|.++ .|+|-.. .+++|+ ..|.|.||
T Consensus 450 ~~~---q~v~el~~P~~~tI~~vn~~HP~~~-------~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 450 NGG---QMVCELHDPESSTIPSVNEFHPMRD-------TLAAGGNSSGKIYVF 492 (498)
T ss_pred CCC---EEeeeccCccccccccceeeccccc-------ceeccCCccceEEEE
Confidence 876 54555443332 45544 7899875 455554 77888887
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=184.51 Aligned_cols=250 Identities=22% Similarity=0.321 Sum_probs=194.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.++|.|++-+ |.+|+.|+.. .|++|.+ .+|..+..+.. |-..|+|+.|+.|+ |+||+.||.|.+|.+..-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~a---HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWEL-SSGILLNVLSA---HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEe-ccccHHHHHHh---hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 35789999888 8888888777 9999999 99999999988 99999999999987 999999999999997531
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+...+.. .......|..|.-+|+++...+ .++++++.|.++++||+..+..+.++
T Consensus 156 -----v~a~~~~----------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 156 -----VSADNDH----------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -----cccccCC----------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 1111000 1111245569999999999887 79999999999999999999988887
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccc------cccccceeeeeEeecccc--ceeEEEEecCCCEE
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHN------KERKSRHMLVTTLVKHRS--TVNALALNGDGSLL 249 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 249 (357)
.....+.+++.+|-+ .+++|+.+|.|.+.++.....+ +...........+.+|.+ +|+|++++-||..|
T Consensus 215 --~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 215 --TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred --ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 778899999999988 5999999999999988643321 122234455667788888 99999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEee---cCceEEEecCCCeEEEeeCC
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN---VGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~vw~~~ 307 (357)
++|+.||.++|||+.+.+.+ +++....++|+-+.+ .+..+..-.....+-.|++.
T Consensus 293 lSGd~dg~VcvWdi~S~Q~i---Rtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSKQCI---RTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EeeCCCCCEEEEecchHHHH---HHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 99999999999999987743 444435677777766 33444433334445555543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=204.07 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=208.8
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+++..... .+++|+. .. +.. |...|.++..-... +++|+.|..+-+|.+........+
T Consensus 6 ~~m~~~~~t~Lr~~~~-~~------~~~---hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~--------- 66 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDT-RE------FVA---HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL--------- 66 (825)
T ss_pred ccceeeeeeccccccc-hh------hhh---hhhhhceeeeeccceeeccCCCceeeccccccCCchhhee---------
Confidence 34455566 7888887 32 233 77888888764333 999999999999998765433322
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
.+|..+|.++.|+. .+|++|+.+|+|++||++..+.+.++ .+|...+.++.|+|-+
T Consensus 67 ---------------------~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~ 124 (825)
T KOG0267|consen 67 ---------------------TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYG 124 (825)
T ss_pred ---------------------eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccce
Confidence 29999999999999 88999999999999999999999999 8999999999999998
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
+++.|+.|+.+++||++ ...+...+.+|...|..+.|+|+|++++.|++|..++|||+..++ ....
T Consensus 125 ~~~a~gStdtd~~iwD~R----------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---~~~e 191 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIR----------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---LSKE 191 (825)
T ss_pred EEeccccccccceehhhh----------ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---cccc
Confidence 58899999999999998 556778888899999999999999999999999999999999887 5667
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+..|.+.+..+.+++. ++++|+.|+++++||+++- +.+.........|.+..|+|++. .+.+|..+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~-------~~~~G~q~ 259 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGK-------IVLSGEQI 259 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCce-------eeecCchh
Confidence 8889999999999987 8899999999999999974 67777777788999999999997 77776544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=192.36 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=208.4
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceecccc------------CC---------CCceEEEEEecCc--eE
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDL------------SS---------SGSVKSITFHITK--IF 86 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~------------~~---------~~~v~~l~~~~~~--l~ 86 (357)
..+|++.+.++|++|..+ .|++|+. .+...+.++.... .| -....++.|.+.. |.
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp-~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNP-ETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCc-chhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 357888889999999999 9999998 7655444443211 00 0123467788654 88
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-------------C
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-------------G 153 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~ 153 (357)
+.-.|..+.|||++..........+ .-|...|+++.-.| .
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~---------------------------lyHS~ciW~Ve~~p~nv~~~~~aclp~~ 393 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSM---------------------------LYHSACIWDVENLPCNVHSPTAACLPRG 393 (1080)
T ss_pred EEEcCceEEEEeccccccccceeee---------------------------eeccceeeeeccccccccCcccccCCcc
Confidence 8899999999999876544333222 14555555554322 6
Q ss_pred eEEEEecCCeEEEEEcCcchhhhh------------c------------------------cccccccEEEEEEecCC-e
Q 038568 154 LMYSVSWDRSFKIWNASNYKCLES------------V------------------------NKAHEDAVNAVVVSDNG-V 196 (357)
Q Consensus 154 ~l~~~~~dg~i~iwd~~~~~~~~~------------~------------------------~~~~~~~v~~~~~~~~~-~ 196 (357)
.+.+++.|++|++||+..+..-.. + .......+.+++++|++ +
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 799999999999999875210000 0 01233568999999999 5
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec---CCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
|++|..-|.+++|++. .......+..|...|.|+.|+. ..++|++++.|..|+|||..... .+..
T Consensus 474 LAsGDr~GnlrVy~Lq----------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--~l~q 541 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQ----------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--DLVQ 541 (1080)
T ss_pred ecccCccCceEEEEeh----------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--chhh
Confidence 9999999999999998 5566777889999999999986 44689999999999999986433 2445
Q ss_pred eccCCccceEEEeec-------------------------------------------------Cc--eEEEecCCCeEE
Q 038568 274 ALWGHTGALLCLINV-------------------------------------------------GD--LLASGSADRTVR 302 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~-------------------------------------------------~~--~l~~~~~dg~i~ 302 (357)
++.+|...|+++.|. |. ++++++.|..|+
T Consensus 542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 555666655554432 33 889999999999
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+++++++.+.++--++|.+..-.+...|.+- ||++...|.++.++|
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-------Y~atScsdktl~~~D 669 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-------YLATSCSDKTLCFVD 669 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc-------EEEEeecCCceEEEE
Confidence 999999976666666677888888999999998 999999999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=203.17 Aligned_cols=237 Identities=18% Similarity=0.288 Sum_probs=192.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC------------------ccccceeccccCCCCceEEEEEecCc--
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD------------------YSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
|.+.|+|+.|+ |++||+|++| .|.||+. .. .+.+..+.+ |...|..++|+|+.
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~-~~~~~~~~fgs~g~~~~vE~wk~~~~l~~---H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWER-AEIGSGTVFGSTGGAKNVESWKVVSILRG---HDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeee-cccCCcccccccccccccceeeEEEEEec---CCCccceeccCCCccE
Confidence 99999999999 9999999999 9999998 41 124566777 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
|++++.|++|.+|+..+.+....+ .+|.+.|..+.|.| ++|++-+.|+
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl------------------------------~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVL------------------------------RGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred EEEecccceEEEEccccceeeeee------------------------------ecccccccceEECCccCeeeeecCCc
Confidence 999999999999999887544433 39999999999999 9999999999
Q ss_pred eEEEEEcCcchhhhhccc-----cccccEEEEEEecCCe-EEEEeC----CCeEEEEEccccccccccccceeeeeEeec
Q 038568 163 SFKIWNASNYKCLESVNK-----AHEDAVNAVVVSDNGV-VYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+|++|++.+....+.+.. .....+..+.|+|||. |++... -..+.|.+-. ..+.-..+.+
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~----------tWk~~~~LvG 263 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG----------TWKVDKDLVG 263 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC----------Cceeeeeeec
Confidence 999999877555554421 2345678999999994 655432 3456676654 5666778899
Q ss_pred cccceeEEEEec-----CCC------------EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 233 HRSTVNALALNG-----DGS------------LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 233 ~~~~v~~~~~~~-----~~~------------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
|..++.++.|+| ..+ .+|+|+.|++|.||.....+++..+..+. ...|..++|+++ .|+
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDGFSLF 341 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh--cCceeeeeEcCCCCeEE
Confidence 999999999998 112 68899999999999998777765555543 457899999987 899
Q ss_pred EecCCCeEEEeeCCCCc
Q 038568 294 SGSADRTVRIWQRGKEN 310 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~ 310 (357)
+++.||+|.+..++..+
T Consensus 342 acS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 342 ACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCeEEEEEcchHH
Confidence 99999999999997643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=180.46 Aligned_cols=240 Identities=20% Similarity=0.316 Sum_probs=181.1
Q ss_pred CccceeEEEEe--cc--eEEEeeCC-ceEEEeccCC---------------ccccceeccccCCCCceEEEEEecC--c-
Q 038568 28 HHMIISCLAVH--NS--LLYAASLN-EINVFDLISD---------------YSHVDTFSNDLSSSGSVKSITFHIT--K- 84 (357)
Q Consensus 28 h~~~i~~~~~s--~~--~l~t~~~d-~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~l~~~~~--~- 84 (357)
|.+.|+.+.-+ ++ +.|+=+.. .|.||++... .+++.++.+ |...=+.|+|+|- +
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g---hk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG---HKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc---cCccceeeecccccccc
Confidence 77788887776 43 44444455 9999998311 345666666 8888899999994 3
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d 161 (357)
|++|..-+.|++|...++........+ .+|...|-.++|+| ..|++|+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf---------------------------~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPF---------------------------TGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred cccCccccceEeeeeccCceeecCccc---------------------------cccccchhhhccCCccCceEEeeecC
Confidence 999999999999999887654333332 38999999999999 899999999
Q ss_pred CeEEEEEcCcchhhh-hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 162 RSFKIWNASNYKCLE-SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|+|+|||++.+.... .+...|...|+.|.|+... .|++|+.||+++|||+|.. + ..+++..++-|..+|++
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~-~~~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------K-SGQPVATFKYHKAPITS 352 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------c-CCCcceeEEeccCCeeE
Confidence 999999999873222 2227899999999999776 6999999999999999933 2 23788899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCCce-------------eeeeeccCC--ccceEEEeecCc---eEEEecCCCe
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDHRM-------------VFAEALWGH--TGALLCLINVGD---LLASGSADRT 300 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~--~~~v~~~~~~~~---~l~~~~~dg~ 300 (357)
+.|+| +...|++++.|.+|.+||+.-.... .+.+-+.-| ...+..+.|++. +|++.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG- 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG- 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence 99999 4568889999999999998632210 001112223 234566777755 889988888
Q ss_pred EEEee
Q 038568 301 VRIWQ 305 (357)
Q Consensus 301 i~vw~ 305 (357)
+.||.
T Consensus 432 fnVfk 436 (440)
T KOG0302|consen 432 FNVFK 436 (440)
T ss_pred eeEEE
Confidence 55553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=179.84 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=217.0
Q ss_pred CCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEE
Q 038568 25 PDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRV 96 (357)
Q Consensus 25 g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~v 96 (357)
++|-.+.|+++.|+ ..+|++|+.| .++||.+ +. ...++.+.- ..-+|.+..|.|++ +++++....+..
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l---~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHL---EKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEe-cCccChhheeeee---ccCccceeeecCCCceEEEecccceEEEE
Confidence 45567899999999 7899999999 9999998 44 234555554 67899999999987 899999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc-cccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH-WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
||+.+.+..+ +.... ++ ...+..+..++ ++|+..+..|.|.+....+++
T Consensus 285 yDle~ak~~k-~~~~~---------------------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 285 YDLETAKVTK-LKPPY---------------------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred eecccccccc-ccCCC---------------------------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 9998876432 22111 22 23455566666 899999999999999999999
Q ss_pred hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce--eEEEEecCCCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV--NALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~ 250 (357)
.+..+ ...+.+..++|+.++ .|++++.+|.|.+||++ ...++..+.. .+.| ++++.++++.+||
T Consensus 337 li~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~----------~~~~~~rf~D-~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 337 LITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR----------QNSCLHRFVD-DGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred hhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC----------CcceEEEEee-cCccceeeeeecCCCceEE
Confidence 99998 677889999999999 48888899999999998 3355555543 3333 5677778999999
Q ss_pred EEecCCeEEEEeccc---CCceeeeeeccCCccceEEEeecCc--eEEEec--CCCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 251 SGGCDRWIVVWERER---DHRMVFAEALWGHTGALLCLINVGD--LLASGS--ADRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
+|+..|.|.|||.++ ...+.++..+..-...|..+.|+++ .||.++ .+..+|+-.+.+...+.........-+
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 999999999999753 2333455666667778999999988 555444 578899998887533333333334446
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|+|++|+|.+. +||.|-.+|+|.+|.
T Consensus 484 ~vtc~aFSP~sG-------~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 484 HVTCMAFSPNSG-------YLAVGNEAGRVHLFK 510 (514)
T ss_pred ceEEEEecCCCc-------eEEeecCCCceeeEe
Confidence 799999999988 999999999999993
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=183.35 Aligned_cols=203 Identities=20% Similarity=0.335 Sum_probs=165.9
Q ss_pred cccccEEEEEEec----CeEEEEecCCeEEEEEcCc----------------chhhhhccccccccEEEEEEec--CCeE
Q 038568 140 EHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN----------------YKCLESVNKAHEDAVNAVVVSD--NGVV 197 (357)
Q Consensus 140 ~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~--~~~l 197 (357)
.|.+.++.+...+ .+.++-+..|.|.|||+.. .+++.++ .+|...-..++|+| .|.|
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccccc
Confidence 5666676666655 5677778899999999753 2345556 77888889999999 4579
Q ss_pred EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 198 YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 198 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
++|..-+.|++|... ++. -..-...+.+|...|..|+|+|. ...|++|+.||+|+|||++.+.....+.. .
T Consensus 228 lsGDc~~~I~lw~~~------~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPS------TGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred ccCccccceEeeeec------cCc-eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 999999999999987 211 12223456679999999999994 45899999999999999998854434433 7
Q ss_pred CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 277 GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.|.+.|..++|+.+ +||+|+.||+++|||+++-+..++++.++.|..+|++|.|+|... ..|+++|.|.+|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------SVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------ceEEeccCCCcEE
Confidence 89999999999987 899999999999999998777788999999999999999999765 3788889999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 374 iWD 376 (440)
T KOG0302|consen 374 IWD 376 (440)
T ss_pred EEE
Confidence 998
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=183.34 Aligned_cols=229 Identities=17% Similarity=0.281 Sum_probs=179.2
Q ss_pred cceEEEeeCC-ceEEEeccCCcc---ccceec---------------cccCCCCceEEEEEecCc---eEEeecCCeEEE
Q 038568 39 NSLLYAASLN-EINVFDLISDYS---HVDTFS---------------NDLSSSGSVKSITFHITK---IFTAHQDCKIRV 96 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~---~~~~~~---------------~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~v 96 (357)
|+++|.|..| .|.|||+ +-.. +...+. ...+|+..|.+|+|+... |++||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDL-DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDL-DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEecc-ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 7899999999 9999998 3211 111110 112488999999999754 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 173 (357)
||+.+++....+. .|...|.++.|+| ..|++|+.|+++.+.|.+...
T Consensus 271 WD~~~g~p~~s~~------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred EEcCCCCcceehh------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 9999998765553 6889999999999 899999999999999998533
Q ss_pred hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 250 (357)
..... -...+.|-.++|.|.. .++++..||.|+-+|+| ...+++.+++.|..+|.++++++. ..+++
T Consensus 321 ~s~~~-wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 321 NSGKE-WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---------NPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccCce-EEeccceEEEEecCCCceeEEEecCCceEEeeecC---------CCCCceeEEEeccCCcceEEecCCCCccee
Confidence 32222 2456789999999977 58999999999999999 244789999999999999999984 45889
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
+++.|+.|++|++...... ......-.-+...|+++.++ .++.|+..+.++|||+.+.
T Consensus 391 t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eccccceEEEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999999999754421 11111111223567777777 8999999999999999876
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=171.31 Aligned_cols=281 Identities=15% Similarity=0.249 Sum_probs=205.9
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
-++..+|+ |.. ..|+.|+ |.+||+|..| .|.|||+ .+...-+.+.+ |..+|++++|++++ |+|+
T Consensus 15 Eel~~tld------~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~-~T~~iar~lsa---H~~pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 15 EELTHTLD------NPL-AECCQFSRWGDYLAVGCANGRVVIYDF-DTFRIARMLSA---HVRPITSLCWSRDGRKLLTS 83 (405)
T ss_pred Hhhceecc------CCc-cceEEeccCcceeeeeccCCcEEEEEc-cccchhhhhhc---cccceeEEEecCCCCEeeee
Confidence 34555666 444 8899999 9999999999 9999999 99888888988 99999999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFK 165 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 165 (357)
+.|..|.+||+..+.....+ ...++|+...|+| +..++.-.+..-.
T Consensus 84 S~D~si~lwDl~~gs~l~ri-------------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRI-------------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred cCCceeEEEeccCCCceeEE-------------------------------EccCccceeeeccccCCeEEEEEecCCcE
Confidence 99999999999999866665 3467899999999 5555554455555
Q ss_pred EEEcCcch--hhhhcccc-ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-cceeEE
Q 038568 166 IWNASNYK--CLESVNKA-HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-STVNAL 240 (357)
Q Consensus 166 iwd~~~~~--~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 240 (357)
+-++..++ ++..-..+ ....-.+..|.+.| ++++|...|.+.++|.. ..+++..++... ..|..+
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~----------t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE----------TLECVASFRITSVQAIKQI 202 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc----------hheeeeeeeechheeeeEE
Confidence 55554421 11111000 11112233577777 69999999999999987 445666666555 788999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCC------ceeeeeeccC--CccceEEEeecCc--eEEEec-CCCeEEEeeCCCC
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDH------RMVFAEALWG--HTGALLCLINVGD--LLASGS-ADRTVRIWQRGKE 309 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~--~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~ 309 (357)
.++..|+.|+.-+.|..||.|+++.-. .+.+...+.. .+..=.++.|+++ |+++++ .-..++||....|
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 999999999999999999999987321 1111111111 0111134455555 666555 4568999999988
Q ss_pred cceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 310 NCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 310 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++.+.|.. .....+.|+|-.+ .+++- ..|.|++|.
T Consensus 283 ---sLVKILhG~kgE~l~DV~whp~rp-------~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 283 ---SLVKILHGTKGEELLDVNWHPVRP-------IIASI-ASGVVYIWA 320 (405)
T ss_pred ---ceeeeecCCchhheeeccccccee-------eeeec-cCCceEEEE
Confidence 7778888877 6688999999987 78877 688999994
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=181.15 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=187.4
Q ss_pred CceEEEEEec---------CceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 73 GSVKSITFHI---------TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 73 ~~v~~l~~~~---------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
....|++|.. +.+|.|+.|..|.|||+.-.......-.+..... ......+.+...-.+|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~s---------k~~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKAS---------KKKKKKGKRSNSASGHTD 244 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhh---------hhhhhhcccccccccchH
Confidence 4446777762 2399999999999999874432222211110000 000000111122247999
Q ss_pred cEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccc
Q 038568 144 AVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 144 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.|.++.|+. +.||+|+.|.+|++||+.++++...+ ..|...|.++.|+|.. .|++|+.|++|.+.|.|.
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~----- 318 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD----- 318 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccC-----
Confidence 999999998 89999999999999999999999999 7899999999999976 599999999999999982
Q ss_pred ccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~ 294 (357)
.......-.-.+.|..++|.| ....++++..||+|+-+|++.... ++.++..|..+|.++++++. ++++
T Consensus 319 -----~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 319 -----PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred -----ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceee
Confidence 111111122457789999999 445788888999999999998753 66778889999999998765 9999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++.|+.|++|++..... +.+....-.-+...|.++.|+-. ..++.||..+.+++||
T Consensus 392 ~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a------~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVA------FTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccceEEEEeecCCCC-cccccccccccceeecccCCCcc------eEEEecCccceEEEee
Confidence 99999999999975421 22222221223466777777765 4788999999999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=188.14 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=232.6
Q ss_pred ccccceecccccCCCCCCCc-cceeEEEEe--c-ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHH-MIISCLAVH--N-SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~-~~i~~~~~s--~-~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+....+.+.+++ |. ++|+.++|. | ..+|+|+.. .+.+||+ +..+.+..++. .|.+.|..+.|.|..
T Consensus 230 NlK~dkil~sFk------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL-e~kkl~~v~~n--ah~~sv~~~~fl~~e 300 (910)
T KOG1539|consen 230 NLKFDKILMSFK------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL-EKKKLINVTRN--AHYGSVTGATFLPGE 300 (910)
T ss_pred EcccCcEEEEEE------ccccceeEEEeccCCCeeEEeccCCceEEEEEc-CCCeeeeeeec--cccCCcccceecCCC
Confidence 445677888898 75 999999998 5 466777776 9999999 77666666652 289999999999988
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeec-Cc------------cccceeeeecCC------------------------
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTL-PT------------VKDRLIRSVLPN------------------------ 125 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~------------------------ 125 (357)
+++++.|+.+++|=.+++.....+-.. .+ ...........+
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 999999999999976643321110000 00 000000000000
Q ss_pred --------------------------------CeEEEecc---------cc----------cccccccccEEEEEEec--
Q 038568 126 --------------------------------NYVTVRRH---------KK----------RLWLEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 126 --------------------------------~~~~~~~~---------~~----------~~~~~~~~~v~~~~~~~-- 152 (357)
+.+..... .. ..++.....+++++.++
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 00000000 00 00111235778888888
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhc--cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESV--NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT 229 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (357)
++.+.|+..|.|-+|++.+|-....+ ...|..+|+.++...-+ .+++++.+|.+++||.. ...++..
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~----------~k~l~~~ 530 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK----------KKVLKKS 530 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC----------Ccceeee
Confidence 89999999999999999999887777 35899999999998766 59999999999999987 3334444
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
+. -...+.++.++.....++.+..|-.|+++|..+.+ ..+.+.+|.+.++.++|+++ +|++++.|++|++||+.
T Consensus 531 l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 531 LR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 43 45678888888888899999999999999999776 66788999999999999987 99999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC-CeEEec
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN-GEIKVW 356 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-g~v~~w 356 (357)
++ .++..+. -..+.+++.|+|++. +|||...| .-|++|
T Consensus 607 t~---~lID~~~-vd~~~~sls~SPngD-------~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 607 TG---TLIDGLL-VDSPCTSLSFSPNGD-------FLATVHVDQNGIYLW 645 (910)
T ss_pred Cc---ceeeeEe-cCCcceeeEECCCCC-------EEEEEEecCceEEEE
Confidence 98 4444333 367899999999999 99999988 568888
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=183.12 Aligned_cols=239 Identities=15% Similarity=0.281 Sum_probs=193.5
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
...+|.+|||+... ||.+-.||.|-+|++...=.....-.. +....|.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g----------------------------~~drsIE~L 75 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG----------------------------PEDRSIESL 75 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec----------------------------CCCCceeeE
Confidence 56789999999654 999999999999999875322222111 445789999
Q ss_pred EEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 149 VVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 149 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+|.+ ..|++.+.+|.|.-||+.+++++..+ ....+.|.+++.+|.+ .++.|+.||.+..++.. ......
T Consensus 76 ~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~--------p~~I~~ 146 (691)
T KOG2048|consen 76 AWAEGGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG--------PDKITY 146 (691)
T ss_pred EEccCCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC--------CceEEE
Confidence 9998 99999999999999999999999998 8889999999999988 59999999977777765 122333
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee----ecc-CCccceEEEeecC-ceEEEecCCCe
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE----ALW-GHTGALLCLINVG-DLLASGSADRT 300 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~-~~~~~v~~~~~~~-~~l~~~~~dg~ 300 (357)
...+....+.|.+++|+|++..+++|+.||.|++||..++....... .+. +...-|.++.+-. +.|++|.+-|+
T Consensus 147 ~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGT 226 (691)
T ss_pred EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCce
Confidence 44455567899999999999999999999999999999887654221 111 1233456666654 49999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
|.+||...+ .++..+..|...|.+++..+++. +++++|.|+.|..|
T Consensus 227 V~FWd~~~g---TLiqS~~~h~adVl~Lav~~~~d-------~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 227 VTFWDSIFG---TLIQSHSCHDADVLALAVADNED-------RVFSAGVDPKIIQY 272 (691)
T ss_pred EEEEcccCc---chhhhhhhhhcceeEEEEcCCCC-------eEEEccCCCceEEE
Confidence 999999987 77788889999999999999988 99999999988654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=188.52 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=208.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-cccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|+..-+.|+|. |++|.+++.| .|++|+. ... +...++.. +...|.+++-..+.|++++.+++|.+|.+.+++
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~-~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKT-NSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeec-CCcccCCchhhc---cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 88999999999 9999999999 9999998 444 56666665 888999999998899999999999999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
....+. ...-++.+++++. ++++.|+.|-.|++-+.........+ .+
T Consensus 88 ~~~iL~------------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rg 136 (933)
T KOG1274|consen 88 EDTILA------------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RG 136 (933)
T ss_pred ccceee------------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cc
Confidence 654444 3456889999998 79999999999999999988888888 89
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
|..+|.++.++|++ .|++.+.||.|++||+........-....+. .-......+..++|+|++..++..+.|+.|++
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--NEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc--ccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999999999999 5899999999999999832211111100000 00011456778999999888999999999999
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+.........+..- .+...+.++.|+|. |||+++.||.|.|||+++-+ . ......|.+++|.|+.+
T Consensus 215 y~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h----ccccceeEEEecCCCCC
Confidence 999988755444332 23333777777766 99999999999999999731 1 22346799999999886
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=167.72 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=167.9
Q ss_pred CCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 70 SSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
+|.+.|+++...+.. +++|+.||.|.+||++.....+.-..+-. ...+....++ .+|.-.|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k-----------~~c~v~~~h~----~~Hky~is 105 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK-----------HKCIVAKQHE----NGHKYAIS 105 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh-----------eeeeccccCC----ccceeeee
Confidence 399999999998753 99999999999999986542111000000 0000111111 38899999
Q ss_pred EEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC----eEEEEeCCCeEEEEEccccccccc
Q 038568 147 DLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 147 ~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
++.|.| .++.+++.|.++++||.++.+....| ..++.|.+-+++|-. .+++|..+-.|++.|+.
T Consensus 106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------- 176 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------- 176 (397)
T ss_pred eeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-------
Confidence 999999 89999999999999999998888777 667788888888854 48888899999999998
Q ss_pred cccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccC------------CceeeeeeccCCccceEEEe
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERD------------HRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~ 286 (357)
.+.....+.+|...|.++.|+|... .|++|+.||.|++||++.. +.+...+.-..|.+.+..++
T Consensus 177 ---SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 177 ---SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred ---CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 6678889999999999999999665 6789999999999999753 22222333456888899999
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
|..+ ++++++.|..+++|+..+++
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ecccchhhhhccCccceEEeecccCc
Confidence 8766 99999999999999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-24 Score=176.36 Aligned_cols=259 Identities=12% Similarity=0.117 Sum_probs=177.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
++.+++++.| .|++||+ .+++.+..+.. + ..+.+++|+|++ + ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~-~t~~~~~~~~~---~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDT-ATLEVTRTFPV---G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP----- 70 (300)
T ss_pred CcEEEEecCCCEEEEEEC-CCCceEEEEEC---C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----
Confidence 3678899999 9999999 88888888874 4 346789999986 4 567788999999998775433221
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
.+ ..+..++++| +.++ +++.++.|++||+++.+.+..+ .....+.++++
T Consensus 71 -------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~ 122 (300)
T TIGR03866 71 -------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI--PVGVEPEGMAV 122 (300)
T ss_pred -------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--eCCCCcceEEE
Confidence 11 1245678888 5554 4556899999999987777666 23345678999
Q ss_pred ecCC-eEEEEeCCC-eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCc
Q 038568 192 SDNG-VVYTGSADG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHR 268 (357)
Q Consensus 192 ~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 268 (357)
+|++ .++++..++ .+..||.+ ......... ....+.+++|+|++++|+++ ..++.|++||+++++.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~----------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTK----------TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCC----------CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 9999 466666654 56778876 222222222 22345779999999988655 4699999999998764
Q ss_pred eeeeeec--cCCcc--ceEEEeecCc--e-EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCe
Q 038568 269 MVFAEAL--WGHTG--ALLCLINVGD--L-LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGI 341 (357)
Q Consensus 269 ~~~~~~~--~~~~~--~v~~~~~~~~--~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 341 (357)
...+... ..+.. ....+.++++ + +++.+.++.+.+||.++++ .+..+ .+...+.+++|+|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~------ 261 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---VLDYL-LVGQRVWQLAFTPDEK------ 261 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEE-EeCCCcceEEECCCCC------
Confidence 3322210 00111 1234556554 4 4445567789999998763 33332 2345789999999998
Q ss_pred EEEEEc-CCCCeEEecC
Q 038568 342 VSIGSG-SLNGEIKVWD 357 (357)
Q Consensus 342 ~~l~s~-~~dg~v~~wd 357 (357)
+|+++ +.+|.|++||
T Consensus 262 -~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 262 -YLLTTNGVSNDVSVID 277 (300)
T ss_pred -EEEEEcCCCCeEEEEE
Confidence 77765 5799999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=197.00 Aligned_cols=223 Identities=20% Similarity=0.384 Sum_probs=194.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|...|.|+..- ++.+++|+.| .+-+|.. .....+..|.+ |..+|.++.|++.. |++|+.+|+|++||++..
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~---hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAI-GKPNAITSLTG---HESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccc-cCCchhheeec---cCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 88889988865 8999999999 9999999 66677777888 99999999999876 889999999999999987
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+..+.+ .+|...+.++.|+| .+.++|+.|+.+++||++...|...+ .
T Consensus 103 k~vrtL------------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~ 151 (825)
T KOG0267|consen 103 KIVRTL------------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-K 151 (825)
T ss_pred hhhhhh------------------------------hccccCcceeeeccceEEeccccccccceehhhhccCceeee-c
Confidence 655433 39999999999999 88899999999999999988899998 7
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
+|...+..+.|+|+| +++.++.|..+++||.. .++....+..|...+.++.|+|..-++++|+.|++++
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~----------agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT----------AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccc----------ccccccccccccccccccccCchhhhhccCCCCceee
Confidence 799999999999999 68999999999999997 6778888999999999999999989999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
+||+++-+ .+.........|.+..|+++ .+++|..+
T Consensus 222 f~dletfe---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 222 FWDLETFE---VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccceeE---EeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999765 44444455778999999987 55555444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=185.20 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=186.4
Q ss_pred ccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccce--eccccCCCCceEEEEEecCc---eEEeecC
Q 038568 20 LKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDT--FSNDLSSSGSVKSITFHITK---IFTAHQD 91 (357)
Q Consensus 20 ~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~---l~~~~~d 91 (357)
|+.+.. |.++|..+.|- ...|++++.| ++++||+ +..+.+.. +.+ |.+.|.+++|.|.. |++|+.|
T Consensus 93 lk~~~a--H~nAifDl~wapge~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~G---H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 93 LKKPLA--HKNAIFDLKWAPGESLLVSASGDSTIRPWDV-KTSRLVGGRLNLG---HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred hccccc--ccceeEeeccCCCceeEEEccCCceeeeeee-ccceeecceeecc---cccccchhhhccCCCcceeeccCC
Confidence 444444 99999999999 6689999999 9999999 87777766 776 99999999999865 9999999
Q ss_pred CeEEEEecCCccceeeeeecC-ccccceeeeecCCCeEEEecccccccccccc----cEEEEEEec-CeEEEEec-CCeE
Q 038568 92 CKIRVWKITASRQHQLVSTLP-TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD----AVSDLVVKQ-GLMYSVSW-DRSF 164 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-~~l~~~~~-dg~i 164 (357)
|.|.|||++-... ..+..+. ...........+.. ........+..+.. .|+.+.|.. ..||+++. |+.|
T Consensus 167 g~illWD~R~n~~-d~~e~~~~~~~~~~n~~ptpsk---p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~i 242 (720)
T KOG0321|consen 167 GEILLWDCRCNGV-DALEEFDNRIYGRHNTAPTPSK---PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTI 242 (720)
T ss_pred CcEEEEEEeccch-hhHHHHhhhhhccccCCCCCCc---hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcce
Confidence 9999999875431 0110000 00000000000000 00111122223333 356677777 88999888 9999
Q ss_pred EEEEcCcchhhhhcc-------ccc---cccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 165 KIWNASNYKCLESVN-------KAH---EDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~-------~~~---~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
++||+++........ ..+ ...+.++.....| +|++.+.|+.|++|++.... ..++..+.++
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s--------~sP~~~~sg~ 314 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS--------ISPVAEFSGK 314 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC--------cCchhhccCc
Confidence 999999765443321 112 3356777777766 67777889999999998332 2233333333
Q ss_pred ccc--eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCC
Q 038568 234 RST--VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 234 ~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~ 308 (357)
... -..-..+|++.++++|+.|...++|.+.+.+. ....+.+|...|.++.|.+. -++++++|..+++|++.+
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccC--ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 211 11234578999999999999999999998765 34567799999999999876 788889999999999965
Q ss_pred C
Q 038568 309 E 309 (357)
Q Consensus 309 ~ 309 (357)
+
T Consensus 393 ~ 393 (720)
T KOG0321|consen 393 G 393 (720)
T ss_pred c
Confidence 4
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=186.50 Aligned_cols=236 Identities=18% Similarity=0.231 Sum_probs=194.8
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|...-+.|+|.|++ |++++.||.|++|+.... +....+. .+...|.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~------------------------------~~g~~v~~ 61 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID------------------------------ISGELVSS 61 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh------------------------------ccCceeEE
Confidence 88899999999998 999999999999998765 3322221 36678889
Q ss_pred EEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 148 LVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 148 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
++...++|++|+.+++|.+|.+..++.-..+ ....-++++++++-+| +++.|+.|-.|++.++. ....
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~----------D~s~ 130 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD----------DSSQ 130 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEecc----------ccch
Confidence 9888899999999999999999888766555 6678899999999999 69999999999999987 4556
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC-----ccceEEEeecCc--eEEEecCCC
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH-----TGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~--~l~~~~~dg 299 (357)
...+++|.++|.++.|+|++++||+.+.||.|++||+.++.....+..+... ...+..++|+|+ .++..+.|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 6788999999999999999999999999999999999987644333322221 334567789988 888999999
Q ss_pred eEEEeeCCCCcceeeeeee--cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 300 TVRIWQRGKENCYRCMAFL--EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++|+.... .....+ ..+...+..+.|+|.|. |||+++.||.|.|||
T Consensus 211 ~Vkvy~r~~w---e~~f~Lr~~~~ss~~~~~~wsPnG~-------YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 211 TVKVYSRKGW---ELQFKLRDKLSSSKFSDLQWSPNGK-------YIAASTLDGQILVWN 260 (933)
T ss_pred eEEEEccCCc---eeheeecccccccceEEEEEcCCCc-------EEeeeccCCcEEEEe
Confidence 9999999876 333333 33445599999999998 999999999999997
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=167.31 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=199.7
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
|.+.|+++.|. ..+|.+|..- .|++|++ .+.+....++. .+...|+.+.-.|+. +.+-+.|+.+.+|++..+..
T Consensus 13 ~~~~v~s~~fqa~~rL~sg~~~G~V~~w~l-qt~r~~~~~r~--~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 13 HSSSVTSVLFQANERLMSGLSVGIVKMWVL-QTERDLPLIRL--FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred ccchheehhhccchhhhcccccceEEEEEe-ecCccchhhhh--hccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 99999999999 8889999988 9999999 88888888873 278899999999965 99999999999999986532
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCC-eEEEEEcC-----------cc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDR-SFKIWNAS-----------NY 172 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~iwd~~-----------~~ 172 (357)
.. .|+-.++++.|.+.-+...+... .+-.++-+ ..
T Consensus 90 i~---------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 90 IS---------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred EE---------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 21 23334455555442222222211 11122111 11
Q ss_pred hhhhhc---cccccccEEEEEEec-CC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 173 KCLESV---NKAHEDAVNAVVVSD-NG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 173 ~~~~~~---~~~~~~~v~~~~~~~-~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
..+... .....+.+.+..+.- ++ .+++|.++|.+.+||+...+..-......+.......|..+|.++.|.+.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence 111111 023345566666443 23 38899999999999998443222222334455566779999999999986
Q ss_pred CCEEEEEecCCeEEEEecccCCc-eeee--eeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 246 GSLLFSGGCDRWIVVWERERDHR-MVFA--EALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
-..=++|+.+..+..|+++.... +... ..+......-..+..+++.+|+++.|+.||||+.++. +++..++.|.
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHs 293 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHS 293 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---Cchhhhhhhh
Confidence 66678888888899999874421 1111 1121111122446667779999999999999999997 7888999999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|++++|+|+.+ ++|++|.|++|.+|+
T Consensus 294 agvn~vAfspd~~-------lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 294 AGVNAVAFSPDCE-------LMAAASKDARISLWK 321 (323)
T ss_pred cceeEEEeCCCCc-------hhhhccCCceEEeee
Confidence 9999999999987 999999999999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=178.08 Aligned_cols=320 Identities=17% Similarity=0.201 Sum_probs=227.8
Q ss_pred eecccccCCCCCCCccceeEEEEe--cc---eEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCceE
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NS---LLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITKIF 86 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~---~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 86 (357)
..+.++++ |.++|+|+.+- .+ ++++|+.| .|++|.+ +. ...+..+++ |...+.|+.-.+....
T Consensus 45 ~i~t~l~G-----H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l-~~~~~~~i~~~~g---~~~~~~cv~a~~~~~~ 115 (764)
T KOG1063|consen 45 LIVTTLDG-----HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKL-RDEYLIKIYTIQG---HCKECVCVVARSSVMT 115 (764)
T ss_pred eeEEeccC-----CccceEEEEEcccccccceEEEccCCCcEEEEEE-eehheEEEEeecC---cceeEEEEEeeeeEEE
Confidence 45566665 99999999997 33 79999999 9999999 53 233445554 6665555544333333
Q ss_pred EeecCCeEEEEecCCccceeeeee---------------cCccccceeeeecCCCeEEEeccc------ccccccccccE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVST---------------LPTVKDRLIRSVLPNNYVTVRRHK------KRLWLEHWDAV 145 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 145 (357)
+.+.|+++.+||.+..+. ..... .+.....+.........+.+.... ...+.+|.+.|
T Consensus 116 ~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWI 194 (764)
T ss_pred eeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhh
Confidence 347899999999955441 11111 110111111111222223333322 24558999999
Q ss_pred EEEEEec-----CeEEEEecCCeEEEEEcCcch---------------------hh---------hhccccccccEEEEE
Q 038568 146 SDLVVKQ-----GLMYSVSWDRSFKIWNASNYK---------------------CL---------ESVNKAHEDAVNAVV 190 (357)
Q Consensus 146 ~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~---------------------~~---------~~~~~~~~~~v~~~~ 190 (357)
.+++|.. -+|+++|.|..|+||.+.-+. .+ ..+..+|.+.|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9999988 479999999999999764322 01 012258999999999
Q ss_pred EecCC-eEEEEeCCCeEEEEEccccccccccccceeeee---EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 191 VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT---TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 191 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
|+|.+ .|++++.|.++.+|... +......... ...+.........|+|+++.+++-+..|-.++|.....
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd------~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPD------ENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred EccchhhheecccCcceEEEecC------CccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 99999 69999999999999876 2222222222 22233456788999999999999999999999996655
Q ss_pred CceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCC-CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
..........||...|..++|+| ++|++.+.|.+-|+|-.- ....+..+.+.+-|...++|++|-+... .
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~-------~ 421 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL-------Q 421 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc-------e
Confidence 55556667789999999999995 599999999999998765 3334677888889999999999999544 7
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++|.+...+|+|+
T Consensus 422 FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 422 FVSGADEKVLRVFE 435 (764)
T ss_pred eeecccceeeeeec
Confidence 99999999999875
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=179.16 Aligned_cols=234 Identities=19% Similarity=0.310 Sum_probs=187.7
Q ss_pred CCCceEEEEEecC-c-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHIT-K-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~-~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|.+-|.++..+.. + ++||+. |.|+|||+........+..+.- ......|.++
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc-------------------------l~rdnyiRSc 471 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC-------------------------LNRDNYIRSC 471 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc-------------------------cCcccceeee
Confidence 8888989988854 4 888776 8999999986643333322211 0234568888
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhh--hhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCL--ESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
...+ +.|++|+.-.++.|||+...... ..+ ....-...+++.+||.. .++++.||.|.|||+. .
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spDakvcFsccsdGnI~vwDLh----------n 540 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----------N 540 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----------c
Confidence 8888 88999999999999999865433 233 33345677899999985 8889999999999998 6
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTV 301 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i 301 (357)
...++.+++|...+.||.+++||..|.+|+-|++||.||+++++++... .....|.++.+.|+ +++.|-+++.+
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcE
Confidence 7789999999999999999999999999999999999999988754221 23456777776665 99999999999
Q ss_pred EEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 302 RIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 302 ~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|......+ .+.+..|.+-|.++.|.+.++ ++++.|.|..+..|
T Consensus 617 evlh~skp~----kyqlhlheScVLSlKFa~cGk-------wfvStGkDnlLnaw 660 (705)
T KOG0639|consen 617 EVLHTSKPE----KYQLHLHESCVLSLKFAYCGK-------WFVSTGKDNLLNAW 660 (705)
T ss_pred EEEecCCcc----ceeecccccEEEEEEecccCc-------eeeecCchhhhhhc
Confidence 999887653 455677999999999999999 99999999998888
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=167.29 Aligned_cols=272 Identities=14% Similarity=0.238 Sum_probs=195.8
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec----CceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI----TKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
..+|++-.+ .|++||. .+++.+..|.+ +...++.+.|.. +.+.+|+.||+|++||++.......+..-
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~---~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~--- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKG---PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT--- 113 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecC---CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc---
Confidence 457777777 9999999 89999999998 888888888875 34999999999999999987655444332
Q ss_pred ccceeeeecCCCeEEEeccccccccccc-ccEEEEEEec--CeEEEEec----CCeEEEEEcCcchh-hhhccccccccE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVSDLVVKQ--GLMYSVSW----DRSFKIWNASNYKC-LESVNKAHEDAV 186 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v 186 (357)
.+. .+..+++.+. +.+++|.. +-.|.+||++..+. +..+...|...|
T Consensus 114 -------------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 114 -------------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred -------------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 333 4667777764 56666643 66799999998776 788878999999
Q ss_pred EEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEec
Q 038568 187 NAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWER 263 (357)
Q Consensus 187 ~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~ 263 (357)
++++|+|.. .|++|+.||.|.+||+.. .. ....+.....+...|.++.|..++ +.|.+-+......+|++
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~------d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKK------DN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCC------Cc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 999999987 799999999999999972 21 122233334577889999999876 35888888999999999
Q ss_pred ccCCceeeeeec----------cCCccceEEEeecCc-eEEEecC-CCeEEEeeC---CCCcceeeeeeecC-CcCceEE
Q 038568 264 ERDHRMVFAEAL----------WGHTGALLCLINVGD-LLASGSA-DRTVRIWQR---GKENCYRCMAFLEG-HEKPVKS 327 (357)
Q Consensus 264 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~-~l~~~~~-dg~i~vw~~---~~~~~~~~~~~~~~-h~~~v~~ 327 (357)
+.+......... .....-|.+...... ..+.++. -|...++-+ .++.....+..+++ |..-|++
T Consensus 242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 877632211111 001112222222222 4444433 555555543 34444455666666 7778999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|...+. ++.|||.||.+.+|.
T Consensus 322 i~~~~~~~-------~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 322 ILFDVKND-------VLYTGGEDGLLQAWK 344 (376)
T ss_pred Hhhhcccc-------eeeccCCCceEEEEe
Confidence 99987777 999999999999993
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=173.12 Aligned_cols=255 Identities=13% Similarity=0.160 Sum_probs=194.5
Q ss_pred eeEEEEe-cceEEEee--CC-ceEEEeccCCcc-ccceeccccCCCCceEEEEEec--CceEEeecCCeEEEEecCCccc
Q 038568 32 ISCLAVH-NSLLYAAS--LN-EINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHI--TKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~--~d-~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
+.++.|+ .++|++++ .| .+++|.- .... .+...... ....-.|++... -++++|+..+.|+|||++....
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 8899999 66577665 66 9999986 3321 11111110 111222333222 2399999999999999985444
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
.+.+ .+|.+.|+++.++. .+||+++..|.|.|..+.++..-..+....
T Consensus 114 hr~l------------------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 114 HRFL------------------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhc------------------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 3333 38999999999998 899999999999999999998888885555
Q ss_pred cccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEE
Q 038568 183 EDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIV 259 (357)
Q Consensus 183 ~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 259 (357)
...+.-+.++|.. .|.+++.+|.|.+||+. ...........|..+...++|+| +..+|++.+.|..|.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~---------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ---------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEecc---------CCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 6677899999977 48889999999999997 22334445668999999999999 556889999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
+||.+.......+. ...+...++|.++ +|++|...|.|..||++..+ .++..+..|...|++++|-|..
T Consensus 235 ~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred Eeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 99998665332222 3455667777666 99999999999999999864 7788999999999999998874
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=194.45 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=191.0
Q ss_pred CccceeEEEEe--cc----eEEEeeCC-ceEEEeccCC---c---cccceeccccCCCCceEEEEEecCc---eEEeecC
Q 038568 28 HHMIISCLAVH--NS----LLYAASLN-EINVFDLISD---Y---SHVDTFSNDLSSSGSVKSITFHITK---IFTAHQD 91 (357)
Q Consensus 28 h~~~i~~~~~s--~~----~l~t~~~d-~i~iw~~~~~---~---~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d 91 (357)
-...-+.++|. +. +||.|..| .|.+||. .. + ..+.++.. |.+.|..+.|++.. |++|+.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p-~~~~~~~~~~~la~~~~---h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDP-ASIIANASEEVLATKSK---HTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecc-hhhccCcchHHHhhhcc---cCCceeeeeccccCCceeeccCCC
Confidence 45677889998 44 48888888 9999998 43 2 33445554 99999999999864 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEE
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd 168 (357)
|.|.|||+...+....... ....+.|.+++|+. ..|++++.+|++.|||
T Consensus 139 geI~iWDlnn~~tP~~~~~----------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGS----------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred CcEEEeccCCcCCCCCCCC----------------------------CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 9999999987553322211 13467899999999 8899999999999999
Q ss_pred cCcchhhhhcccccc-ccEEEEEEecCC--eEEEEeCCC---eEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 169 ASNYKCLESVNKAHE-DAVNAVVVSDNG--VVYTGSADG---RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~--~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
++..+.+..+..... ..+..++|+|+. ++++++.|. .|.+||+| ....+++.+.+|...|.++.|
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---------~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---------FASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc---------ccCCchhhhcccccceeeecc
Confidence 999888877732222 357899999998 577777654 58999998 245577788899999999999
Q ss_pred ecCC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 243 NGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 243 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
++.+ ++|++++.|++|.+|+.++++ .+..+.....++..+.|.++ .+++++-||.|.|+.+...
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9955 899999999999999999988 44555557788999999876 8999999999999998764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=165.11 Aligned_cols=289 Identities=11% Similarity=0.191 Sum_probs=211.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC------ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD------YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~v 96 (357)
|.+.|+++.|+ +++||+|+.| .+++|++ +. .+++..... +|...|.|++|.... +++|+.+++|..
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~-de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNV-DELMVRKTPKPIGVMEH--PHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeech-HHHHhhcCCCCceeccC--ccccceEEEEEccCCeeEecCCCcceeEe
Confidence 99999999999 9999999999 9999998 43 344444433 477999999999654 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK- 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~- 173 (357)
-|+++.+.+...... ...+.|+.+..+| +.|++.+.++.|.+||.+..+
T Consensus 132 HDiEt~qsi~V~~~~----------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 132 HDIETKQSIYVANEN----------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eecccceeeeeeccc----------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 999988655433221 3345899999999 999999999999999998654
Q ss_pred hhhhcc-ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 174 CLESVN-KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+..+. .........+.|+|.. +|++.+..+.+-+||++.....-- .......+......-.++.|+|+|+.++
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY---QRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH---hhhccccCcccchhhhheeeCCCCCeeh
Confidence 333221 2345667888999977 588999999999999983221100 0000111111122336788999999998
Q ss_pred EEecCCeEEEEecccCCceeeeeecc--C--CccceEEEeecCc-eEEEecCCCeEEEeeCCCCc---------------
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALW--G--HTGALLCLINVGD-LLASGSADRTVRIWQRGKEN--------------- 310 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~--------------- 310 (357)
+--....-.+||+-+.+.+....... + ....+.+++|.++ .+++|+.+-.|++|.+....
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred hhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhC
Confidence 88777777888988765432221111 0 1224567778877 79999999999999885311
Q ss_pred -----ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 -----CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 -----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+..+++|.+-++.+.|+|-.. +|++.|....+++|.
T Consensus 341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------LLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEecccccccceeecCCcc-------eEeccchhhheeccc
Confidence 1134567899999999999999987 999999999999994
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=175.85 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=218.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~ 100 (357)
|.+.|..|.|+ |..|++|+.| .|.+||+ ..+.....|.. +|...|....|.|.. +++++.||.+++=.+.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW-~~~~~~l~f~S--GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDW-VSGSPKLSFES--GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehh-hccCccccccc--ccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 99999999999 9999999999 9999999 77777766665 599999888888753 9999999999998876
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
........+.+ ..|.++|..++..| ..|.+++.|+.+.-+|+++..+...
T Consensus 218 ~t~~~e~t~rl---------------------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 218 ETGYVENTKRL---------------------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred cccceecceec---------------------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 54433322222 27889999999888 8899999999999999988765444
Q ss_pred cc--ccccc---cEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccc--cceeeeeEeeccccceeEEEEecCCCE
Q 038568 178 VN--KAHED---AVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERK--SRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 178 ~~--~~~~~---~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+. ..+.. ....++..|.+ ++++++.|..+++||.+..+...... ....+-.........|++++|+.++.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 32 22233 56788888876 59999999999999988443321111 000111111122346899999988877
Q ss_pred EEEEecCCeEEEEecccCCc----------eeeeeeccCCccc--eEEEeecC---ceEEEecCCCeEEEeeCCCCccee
Q 038568 249 LFSGGCDRWIVVWERERDHR----------MVFAEALWGHTGA--LLCLINVG---DLLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~--v~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
|+++..|-.|+++.-..+.- .......++|.+. |..+-|-| +++++|+.-|.|.+|+-.++ +
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---e 427 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---E 427 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---H
Confidence 88888888899995442221 1122336777653 56666655 39999999999999999987 6
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+..+.+...-|+||.-+|-.+ +|||+|-|..|+||
T Consensus 428 ii~~MegDr~VVNCLEpHP~~P-------vLAsSGid~DVKIW 463 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLP-------VLASSGIDHDVKIW 463 (559)
T ss_pred HHHHhhcccceEeccCCCCCCc-------hhhccCCccceeee
Confidence 6677777777999999999998 99999999999999
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=192.39 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=198.9
Q ss_pred eCC-ceEEEecc-CCc----cccceeccccCCCCceEEEEEecCc------eEEeecCCeEEEEecCCc---cceeeeee
Q 038568 46 SLN-EINVFDLI-SDY----SHVDTFSNDLSSSGSVKSITFHITK------IFTAHQDCKIRVWKITAS---RQHQLVST 110 (357)
Q Consensus 46 ~~d-~i~iw~~~-~~~----~~~~~~~~~~~~~~~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~---~~~~~~~~ 110 (357)
+.+ ++.||.+. .+. +.+..+. .....+.|+|.+.+ |+.|..||.|.+||...- .....+..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~----s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~ 111 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ----SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT 111 (1049)
T ss_pred ccccccceeeecccCcccccccccccc----ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh
Confidence 345 66676661 111 2344444 56788999998642 788889999999998752 22222222
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhc-cccccccE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESV-NKAHEDAV 186 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v 186 (357)
...|.+.|..+.|++ +.||+|+.||.|.|||+++.+.-... .......|
T Consensus 112 ---------------------------~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI 164 (1049)
T KOG0307|consen 112 ---------------------------KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI 164 (1049)
T ss_pred ---------------------------hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence 238999999999999 69999999999999999885544444 23356789
Q ss_pred EEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc--cceeEEEEecCC-CEEEEEecCC---eE
Q 038568 187 NAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR--STVNALALNGDG-SLLFSGGCDR---WI 258 (357)
Q Consensus 187 ~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg---~i 258 (357)
.+++|+..- .|++++.+|.+.|||++ ..+++..+..+. ..+..++|+|+. ..|++++.|. .|
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr----------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLR----------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceecccc----------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 999998765 49999999999999998 334444444443 347789999965 4666666644 59
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.+||++.... ..+.+.+|...|++++|.+. +|++++.|+.|.+|+.+++ +.+..+....+.+..+.|+|...
T Consensus 235 qlWDlR~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 235 QLWDLRFASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred EeecccccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceeeeeecCCCc
Confidence 9999986554 55677899999999999865 9999999999999999998 77888888889999999999877
Q ss_pred CCCCCeEEEEEcCCCCeEEec
Q 038568 336 SASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+++.++.||.|.||
T Consensus 310 ------~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 310 ------SVMAAASFDGKISIY 324 (1049)
T ss_pred ------chhhhheeccceeee
Confidence 378899999999887
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=155.95 Aligned_cols=288 Identities=15% Similarity=0.164 Sum_probs=203.1
Q ss_pred cceecccccCCCCCCCccceeEEEEe-----cceEEEee----CC-ceEEEecc-CCccccceeccccCCCCceEEEEEe
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH-----NSLLYAAS----LN-EINVFDLI-SDYSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s-----~~~l~t~~----~d-~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
..+.+..+. -.-++.++.|+ +.+||.|+ .. .|.|-.+. ++++.+..-. ..|.-+++.+.|.
T Consensus 34 r~~eiy~Y~------ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wi 105 (364)
T KOG0290|consen 34 RRKEIYTYN------APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWI 105 (364)
T ss_pred ccceEEEec------CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC--CCCCCCccceEec
Confidence 444455565 34568899998 66899998 23 66666652 3333333221 2399999999999
Q ss_pred cCc------eEEeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--
Q 038568 82 ITK------IFTAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 82 ~~~------l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 152 (357)
|+. |++.+ +..+++|.+...+.. .....+.... -..+..+++++.|+.
T Consensus 106 Pd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~k----------------------ns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 106 PDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNK----------------------NSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCc----------------------ccccCCcccccccccCC
Confidence 874 33333 347999999753321 1111111100 125678999999998
Q ss_pred -CeEEEEecCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+++.+.+-|-+..|||++++.. ...+ -+|...|..++|...+ .|++.+.||.+|+||+|..+ ....
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-------HSTI 234 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-------HSTI 234 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-------cceE
Confidence 8999999999999999998743 3334 6899999999999966 59999999999999998322 1233
Q ss_pred eeEeeccccceeEEEEec-CCCEEEEEecC-CeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeE
Q 038568 227 VTTLVKHRSTVNALALNG-DGSLLFSGGCD-RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTV 301 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i 301 (357)
+.+-.....+...++|++ |-+++++-..| ..|.|.|++.... .+..+.+|.+.|..++|.|. .|++++.|..+
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 333333356788999998 55688876655 4699999997664 56788999999999999876 99999999999
Q ss_pred EEeeCCCCcc---eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 302 RIWQRGKENC---YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 302 ~vw~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.+||+..... ..++.... ..+.|+.+.|++..+ ..++.+.
T Consensus 313 liWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~------Dwiai~~ 355 (364)
T KOG0290|consen 313 LIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP------DWIAICF 355 (364)
T ss_pred EEEecccccccCCCCchhhhh-ccceeeeeeecccCC------CEEEEEe
Confidence 9999986421 11222222 467899999997654 2666654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=174.84 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=97.9
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecccCCce----eeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeC
Q 038568 235 STVNALALNG-DGSLLFSGGCDRWIVVWERERDHRM----VFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQR 306 (357)
Q Consensus 235 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~ 306 (357)
..|+.+.|+| |...|++++.||.|++|.+..+... ..-..+..|...|..+.|+|- .|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3478889998 7778999999999999998754322 233456789999999999985 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+. +....+.+|.+.|.+++|+|+++ .++|.+.||+|++|+
T Consensus 708 ~~~---~~~~~l~gHtdqIf~~AWSpdGr-------~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANA---KLYSRLVGHTDQIFGIAWSPDGR-------RIATVCKDGTLRVYE 748 (1012)
T ss_pred hhh---hhhheeccCcCceeEEEECCCCc-------ceeeeecCceEEEeC
Confidence 997 55677899999999999999999 999999999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=162.27 Aligned_cols=241 Identities=17% Similarity=0.276 Sum_probs=176.5
Q ss_pred CCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecc
Q 038568 57 SDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRH 133 (357)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (357)
+.++.-.......+|.++|..++|+|-. |++|+.|.+|.||++..+.....+..
T Consensus 66 k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------------------- 122 (472)
T KOG0303|consen 66 KTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------------------- 122 (472)
T ss_pred cccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-----------------------
Confidence 3444333333333599999999999843 99999999999999976644333221
Q ss_pred cccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEE
Q 038568 134 KKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209 (357)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~ 209 (357)
....+.+|...|.-++|+| +.|++++.|.+|.+||+.+++.+.++ .|...|.++.|+.+| +|++.+.|..||+|
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--CCCCeEEEEEeccCCceeeeecccceeEEE
Confidence 1133459999999999999 99999999999999999999999888 499999999999999 79999999999999
Q ss_pred EccccccccccccceeeeeEeeccccc-eeEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCccceEEE
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRST-VNALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
|.+ ..+.+..-.+|.+. -..+.|-.++.++-+|- .+.++-+||...-+.......+....+ |+--
T Consensus 201 dpr----------~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~P 269 (472)
T KOG0303|consen 201 DPR----------RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLP 269 (472)
T ss_pred cCC----------CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEe
Confidence 998 45566666667543 45567778888555553 378899999987776656666654444 4444
Q ss_pred eecCc---eEEEecCCCeEEEeeCCCCccee-eeeeecCCcCceEEEEEeeCC
Q 038568 286 INVGD---LLASGSADRTVRIWQRGKENCYR-CMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 286 ~~~~~---~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.|+++ ..++|-.|+.||.|.+.+..++- -+.+++ ...+-.++.|.|..
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence 56665 55677789999999998764321 122222 34455666666643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=156.92 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=173.6
Q ss_pred ceEEEeccCCcc-----ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--eeeeeecCcccccee
Q 038568 49 EINVFDLISDYS-----HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLI 119 (357)
Q Consensus 49 ~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 119 (357)
.++-|+. +... .+..+++ |...|++++|+.|+ |+|++.|++|++|+++.-.. .++++..
T Consensus 62 r~~~~k~-~q~~f~Hpl~~~~LKg---H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-------- 129 (420)
T KOG2096|consen 62 RNDQWKA-KQPTFVHPLNVSVLKG---HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-------- 129 (420)
T ss_pred chhhhcc-cCCCcccchhhhhhhc---cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--------
Confidence 4555665 3322 2345666 99999999999998 99999999999999976332 1111110
Q ss_pred eeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---h--------hhcccccccc
Q 038568 120 RSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC---L--------ESVNKAHEDA 185 (357)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---~--------~~~~~~~~~~ 185 (357)
-..+.-+.+.|.| ..++++-...++++|.+...+. - ..+...|...
T Consensus 130 --------------------ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~ 189 (420)
T KOG2096|consen 130 --------------------VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD 189 (420)
T ss_pred --------------------ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence 1123457788998 6677777778899998753221 0 1122445666
Q ss_pred EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+..+-...++ +|++++.|..|.+|+++ ++.+..+......-+..+.+|+|+++++++..-.|++|.+-
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-----------Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLK-----------GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecC-----------CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 6666666666 59999999999999986 56667777677777888999999999999999999999874
Q ss_pred c---C--CceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC----Ccceeeeeee----cCCcCceEEEE
Q 038568 265 R---D--HRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK----ENCYRCMAFL----EGHEKPVKSLV 329 (357)
Q Consensus 265 ~---~--~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~----~~~~~~~~~~----~~h~~~v~~~~ 329 (357)
- + +.......+.||...|..++|+++ .+++.+.||.+++||.+- ++..+.+.+. ....+.-..+.
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 2 1 223344578899999999999987 999999999999999852 2222223322 22223334899
Q ss_pred EeeCCC
Q 038568 330 AISSSS 335 (357)
Q Consensus 330 ~~~~~~ 335 (357)
.+|++.
T Consensus 339 lsP~g~ 344 (420)
T KOG2096|consen 339 LSPSGD 344 (420)
T ss_pred eCCCCc
Confidence 999997
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=163.33 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=181.4
Q ss_pred cccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEeccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (357)
......+. +.++|++++|+|.. +++|..-|+|-+||+.+.+. ...+
T Consensus 177 ~~~~v~kv---~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-------------------------- 227 (498)
T KOG4328|consen 177 RILNVAKV---TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-------------------------- 227 (498)
T ss_pred eecceeEe---cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce--------------------------
Confidence 44455555 88999999999964 88899999999999963221 1111
Q ss_pred ccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEE
Q 038568 135 KRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209 (357)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~ 209 (357)
..+..|..+|.++.|+| ..+++.+.||+|+.-|+++...-..+. ......+.++.++.+. .++.+..=|...+|
T Consensus 228 -~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 228 -YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred -EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 12238999999999999 899999999999999998765433331 2244566777777766 47778777899999
Q ss_pred EccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCcee-eeeeccCCccceEEEee
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMV-FAEALWGHTGALLCLIN 287 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~ 287 (357)
|+++ . ......+.-|...|.+++++| ...+|++++.|++.+|||++.-.... ++-....|...|.+..|
T Consensus 307 D~R~------~---~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 307 DLRT------D---GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred Eeec------C---CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 9983 2 222334556778999999999 45589999999999999998644322 23344569999999999
Q ss_pred cCc--eEEEecCCCeEEEeeCCC-Ccceeeeeeec---CCcCc--eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 288 VGD--LLASGSADRTVRIWQRGK-ENCYRCMAFLE---GHEKP--VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 288 ~~~--~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~---~h~~~--v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|. .|++.+.|..|+|||..- +....+...+. .+... .....|.|+.. +++.|-.-..|-|+|
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-------li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-------LIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-------EEEEeccCcceeEEc
Confidence 887 899999999999999841 00112222222 11122 33557999887 888887777776664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=177.68 Aligned_cols=290 Identities=23% Similarity=0.323 Sum_probs=207.0
Q ss_pred ccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecCC
Q 038568 29 HMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~ 101 (357)
..+-..+.|+ ...++++... .|+|||. +.++.+..|.........|+.+.+-.+. +++|+.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345566777 7788888867 9999999 8888888888755667889999998653 99999999999998543
Q ss_pred c--cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 102 S--RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 102 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
. +..+.+....+..+... +..+.=.-+.|.. .+|++++.-..|+|||....++...
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~--------------------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLP--------------------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred cccCCceeEEeeccccccCc--------------------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3 22233332222211111 1111113345655 7777777788999999999988888
Q ss_pred ccccccccEEEEEEecC-C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc--eeEEEEecCCC-EEEEE
Q 038568 178 VNKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST--VNALALNGDGS-LLFSG 252 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~ 252 (357)
+..+....++++.-+-. | .+++|..||.|++||.+... ....+...+.|... |..+.+.++|- .|++|
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------ccccceeecccCCcccceeEEeecCCCcceeee
Confidence 86667777888876543 3 69999999999999998322 22456677788877 99999998665 59999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCc--c-ceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeee----eecCCcC
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHT--G-ALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMA----FLEGHEK 323 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~----~~~~h~~ 323 (357)
+.||.|++||++..... .......|. + ..+++..+.. .+|+|+. +.|+||++...+. ..+. .+....+
T Consensus 1276 s~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIG 1352 (1387)
T ss_pred ccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCC
Confidence 99999999999974222 122222222 3 4777877765 8888888 9999999975321 1111 1222346
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+.+++|+|-.- ++|.|+.|.+|.||
T Consensus 1353 s~scL~FHP~~~-------llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRL-------LLAAGSADSTVSIY 1378 (1387)
T ss_pred CcceeeecchhH-------hhhhccCCceEEEe
Confidence 789999999987 89999999999987
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=156.69 Aligned_cols=295 Identities=17% Similarity=0.194 Sum_probs=196.5
Q ss_pred ccceeEEEEe---cceEEEeeCC-ceEEEeccCCccc---------cceeccccCCCCceEEEEEecCc--eEEeecCCe
Q 038568 29 HMIISCLAVH---NSLLYAASLN-EINVFDLISDYSH---------VDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK 93 (357)
Q Consensus 29 ~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~ 93 (357)
..+|..+.|. .+.||||+.| .|+||.+ +..+. ...+.. |...|+++.|+|++ |++|+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v-~r~~~~~~~~~V~y~s~Ls~---H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKV-NRSEPGGGDMKVEYLSSLSR---HTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeee-eecCCCCCceeEEEeecccC---CcceeEEEEEcCCcCeeeecCCCce
Confidence 4688999998 4489999999 9999998 44222 234444 99999999999997 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
+.+|....-... . .+. ......+.... .+++.+|...|..++|++ .++++++.|..+++||+..
T Consensus 89 v~lWk~~~~~~~----~----~d~-e~~~~ke~w~v-----~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 89 VFLWKQGDVRIF----D----ADT-EADLNKEKWVV-----KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred EEEEEecCcCCc----c----ccc-hhhhCccceEE-----EEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999987641110 0 000 00000111111 133347999999999999 8999999999999999999
Q ss_pred chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc-----------ccceeeeeEee--ccccce
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER-----------KSRHMLVTTLV--KHRSTV 237 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~v 237 (357)
|+.+..+ ..|...+..++|.|-+ ++++-+.|...+.+.+........- .......+.+. ....-.
T Consensus 155 G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 155 GQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred ceeEeec-cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 9999988 8999999999999987 5888888887777665421111000 00001111111 011234
Q ss_pred eEEEEecCCCEEEEEec----CC-----eEEEEecccCCceeeeeeccCCccceEEEeecC-------------------
Q 038568 238 NALALNGDGSLLFSGGC----DR-----WIVVWERERDHRMVFAEALWGHTGALLCLINVG------------------- 289 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~----dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------- 289 (357)
..++|+|+|.+|++.+. ++ ..++|+-...++ +...+.+-..+...+.+++
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC--ceeecCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence 56889999999887643 22 235555443322 2233334444444444432
Q ss_pred -ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 290 -DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 290 -~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..+|.++ .+.|++||.++..++..+. .-|-.+|++++|++++. .|+..|.||...
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~-------~l~vSS~DGyCS 367 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGS-------VLLVSSTDGFCS 367 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEe--eeeeeeecceeecCCCc-------EEEEeccCCceE
Confidence 1345555 4569999999875444333 45788999999999998 999999999754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=162.88 Aligned_cols=262 Identities=16% Similarity=0.170 Sum_probs=188.2
Q ss_pred eEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eE--EeecCCeEEEEecCCccc-eeeeeecCcccc
Q 038568 41 LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IF--TAHQDCKIRVWKITASRQ-HQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~--~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~ 116 (357)
+.+..+.|.++|||+ ...+....+.... ....+.++.|.... |+ +.+.|..+++|.-..... +..+....
T Consensus 5 l~~aS~gd~~kl~D~-s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~---- 78 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDF-SDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT---- 78 (673)
T ss_pred eeeeccCCceEEeec-ccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc----
Confidence 444444559999999 6656555555322 22348999999766 44 445688899997553311 11111110
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
+. .-.|++... .++++|+..++|+|||++...+.+.+ ..|...|+++.++..
T Consensus 79 -----------------------gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~YN~~ 132 (673)
T KOG4378|consen 79 -----------------------GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVDYNNT 132 (673)
T ss_pred -----------------------cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEEecCC
Confidence 11 222333323 78999999999999999965566555 899999999999875
Q ss_pred C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCC-EEEEEecCCeEEEEecccCCceee
Q 038568 195 G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 195 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
. +|++++..|.|.+..+. .......+... ...|.-+.|+|..+ +|.+++.+|.|.+||.....+ .
T Consensus 133 DeyiAsvs~gGdiiih~~~----------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~ 200 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK----------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--I 200 (673)
T ss_pred cceeEEeccCCcEEEEecc----------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--c
Confidence 5 89999999999999987 22222333322 34567899999766 566788999999999986554 3
Q ss_pred eeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 272 AEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
......|..+...++|+|. +|++.+.|..|.+||....+ ....+. ...|.+.++|.++|. +|+.|.
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---s~~~l~-y~~Plstvaf~~~G~-------~L~aG~ 269 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---STDRLT-YSHPLSTVAFSECGT-------YLCAGN 269 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc---ccceee-ecCCcceeeecCCce-------EEEeec
Confidence 4455679999988888775 99999999999999999753 223332 356899999999998 999999
Q ss_pred CCCeEEecC
Q 038568 349 LNGEIKVWD 357 (357)
Q Consensus 349 ~dg~v~~wd 357 (357)
..|.|..||
T Consensus 270 s~G~~i~YD 278 (673)
T KOG4378|consen 270 SKGELIAYD 278 (673)
T ss_pred CCceEEEEe
Confidence 999999987
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=149.36 Aligned_cols=243 Identities=19% Similarity=0.242 Sum_probs=185.7
Q ss_pred CccceeEEEEe---cceEEEeeCC--------ceEEEeccCCc--------cccceeccccCCCCceEEEEEecCc--eE
Q 038568 28 HHMIISCLAVH---NSLLYAASLN--------EINVFDLISDY--------SHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d--------~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
|.+.|+.++-+ ...|+|+..+ .+-||.+.+.. +.+..+.. .+-+.|.|+.|.|+. ++
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt--eavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT--EAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH--HHhCceeeEEEcCCCCeeE
Confidence 88999999888 6778877653 46799983322 22333331 255699999999987 55
Q ss_pred EeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecC
Q 038568 87 TAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWD 161 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~d 161 (357)
+-. |..|.+|++..+..+ ..+.... -.++....++-+|+| +.+++ ..|
T Consensus 140 sm~-dn~i~l~~l~ess~~vaev~ss~-------------------------s~e~~~~ftsg~WspHHdgnqv~t-t~d 192 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVAEVLSSE-------------------------SAEMRHSFTSGAWSPHHDGNQVAT-TSD 192 (370)
T ss_pred Eec-cCceEEEEcccCcchheeecccc-------------------------cccccceecccccCCCCccceEEE-eCC
Confidence 554 899999999877652 1111100 014566778888988 44544 458
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
+++..||+++.++...+..+|...+..+.|+|+. .|++++.||.|++||.| ....++..+.+|...|.+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---------~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---------KTKFPVQELPGHSHWVWA 263 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---------CCCccccccCCCceEEEE
Confidence 9999999999999999988999999999999988 49999999999999998 356788899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCC---------------------c-----eeeeeeccCCccceEEEeecCc--
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDH---------------------R-----MVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~---------------------~-----~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
+.|+| ...++++|+.|..|.+|....-. + -..+.++..|...|.+++|+..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 45688999999999999763210 0 0123356679999999999865
Q ss_pred -eEEEecCCCeEEEeeCCC
Q 038568 291 -LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~ 308 (357)
.+|+-+.||.+.|=.+..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 899999999998877654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=158.44 Aligned_cols=258 Identities=12% Similarity=0.148 Sum_probs=172.6
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceE-EEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLL-YAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I- 85 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l-~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l- 85 (357)
+.++++.+.. | ..+.+++|+ ++.+ ++++.+ .|++||. .+++....+.. +. .+..++|+|++ +
T Consensus 20 t~~~~~~~~~-----~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~---~~-~~~~~~~~~~g~~l~ 88 (300)
T TIGR03866 20 TLEVTRTFPV-----G-QRPRGITLSKDGKLLYVCASDSDTIQVIDL-ATGEVIGTLPS---GP-DPELFALHPNGKILY 88 (300)
T ss_pred CCceEEEEEC-----C-CCCCceEECCCCCEEEEEECCCCeEEEEEC-CCCcEEEeccC---CC-CccEEEECCCCCEEE
Confidence 4556666663 3 346789998 6665 566677 9999999 88777776653 33 35678999986 4
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC-
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR- 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg- 162 (357)
++++.|+.+++||+.+.+....+. +...+.+++|+| .++++++.++
T Consensus 89 ~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 89 IANEDDNLVTVIDIETRKVLAEIP-------------------------------VGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred EEcCCCCeEEEEECCCCeEEeEee-------------------------------CCCCcceEEECCCCCEEEEEecCCC
Confidence 445568999999998765433221 122356789988 6777777665
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEeecc-------
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH------- 233 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------- 233 (357)
.+.+||.++++.+... .......++.|+|++. ++ ++..++.|++||++. .+....+..+
T Consensus 138 ~~~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~----------~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT----------RKVIKKITFEIPGVHPE 205 (300)
T ss_pred eEEEEeCCCCeEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc----------ceeeeeeeecccccccc
Confidence 5677899887665544 2234457899999984 54 445699999999972 2222222111
Q ss_pred ccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe-cCCCeEEEeeCCCC
Q 038568 234 RSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG-SADRTVRIWQRGKE 309 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~-~~dg~i~vw~~~~~ 309 (357)
......++|+|++++++++ +.++.|.+||+++.+..... .+...+.+++|+++ +|+++ +.+|.|++||++++
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 1123468899999986554 45678999999876643222 12345777788765 77665 56899999999997
Q ss_pred cceeeeeeecCCcCceEEEEEee
Q 038568 310 NCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 310 ~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+.+..+... ...++++++|
T Consensus 282 ---~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 282 ---KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ---cEEEEEEcc-cccceeEeCC
Confidence 445555544 4458888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=154.50 Aligned_cols=248 Identities=18% Similarity=0.259 Sum_probs=180.6
Q ss_pred CccceeEEEEe------cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEE
Q 038568 28 HHMIISCLAVH------NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s------~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vw 97 (357)
|...-..++|+ ..++|+|+.- .|+|.|+ .+++....+.+ |...|+.|.++|+. +++++.|..|++|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~-~~~~~~~~~~g---hG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV-VSGQCSKNYRG---HGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEec-chhhhccceec---cCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 77778888887 3578888877 9999999 99999999998 99999999999976 9999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
++++...+..+.-.. +|.+.|.++.|+. .++++++.|.+|++|++...+..
T Consensus 164 nI~~~~Cv~VfGG~e---------------------------gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVE---------------------------GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred eccCCeEEEEecccc---------------------------cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 999987665554433 9999999999999 99999999999999999854321
Q ss_pred hhc---------------------------cccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccc----cccccce
Q 038568 176 ESV---------------------------NKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHN----KERKSRH 224 (357)
Q Consensus 176 ~~~---------------------------~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~ 224 (357)
..+ ...|...|.|+.|-- .++++-+.++.|..|.....+.. +..+...
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 111 023444555555543 26788888999999998321111 0111122
Q ss_pred eeeeEeeccccceeEEE--EecCCCEEEEEecCCeEEEEecccCCceeeeee-ccCCccceEEEeecCc--eEEEecCCC
Q 038568 225 MLVTTLVKHRSTVNALA--LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA-LWGHTGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~l~~~~~dg 299 (357)
..+..+.-....++-+. |+|-++.|+.|.+.|.|++||++..++...... .......|...+|+.+ .|+...+|+
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence 33344444445555554 556778999999999999999997765322111 1112345666666544 899999999
Q ss_pred eEEEeeCC
Q 038568 300 TVRIWQRG 307 (357)
Q Consensus 300 ~i~vw~~~ 307 (357)
+|.-||..
T Consensus 376 ~Vwrwdrv 383 (385)
T KOG1034|consen 376 TVWRWDRV 383 (385)
T ss_pred cEEEEEee
Confidence 99999864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=145.92 Aligned_cols=266 Identities=17% Similarity=0.236 Sum_probs=189.5
Q ss_pred CC-ceEEEeccCCc--c-ccceeccccCCCCceEEEEEecCc---eEEeecC-------CeEEEEecCCccceeeeeecC
Q 038568 47 LN-EINVFDLISDY--S-HVDTFSNDLSSSGSVKSITFHITK---IFTAHQD-------CKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 47 ~d-~i~iw~~~~~~--~-~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~ 112 (357)
.| .|.+.++ +.. . .-+.|.. |.+.|..|+-+|.. |+|+..+ -.+.||.+..........++.
T Consensus 38 ~dNqVhll~~-d~e~s~l~skvf~h---~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRL-DSEGSELLSKVFFH---HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEe-cCccchhhhhhhhc---CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 45 7777777 332 2 2345555 88999999999854 5555442 247899887543321111111
Q ss_pred ccccceeeeecCCCeEEEeccccccc-ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh-hhhcc----ccccc
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC-LESVN----KAHED 184 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~----~~~~~ 184 (357)
.. ..+ ..+-+.|.|+.|.| ..+++-. |..|.+|++..... +..+. ..+..
T Consensus 114 ~v---------------------~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 114 CV---------------------ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred Hh---------------------hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence 00 000 14556899999999 5566555 88999999987665 33321 33566
Q ss_pred cEEEEEEec--CCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEE
Q 038568 185 AVNAVVVSD--NGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVW 261 (357)
Q Consensus 185 ~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw 261 (357)
..++-+|+| ++.-+....|+++..||+|+. .+....-..|...|..+.|+|+.. +|++|+.||.|++|
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~---------~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTM---------KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccch---------hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 788889998 455556667899999999932 222333457888899999999655 78899999999999
Q ss_pred ecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc---------------------c-----e
Q 038568 262 ERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN---------------------C-----Y 312 (357)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~---------------------~-----~ 312 (357)
|.+..+. ++..+.+|...|.++.|++. +|++|+.|..|.+|....-. . -
T Consensus 243 D~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 243 DTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred eccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 9997764 67788999999999999886 89999999999999653210 0 1
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+.++..|.+.|.+++|+.-.+ -.||+-+.||++.|
T Consensus 321 g~l~tydehEDSVY~~aWSsadP------WiFASLSYDGRviI 357 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADP------WIFASLSYDGRVII 357 (370)
T ss_pred cccccccccccceEEEeeccCCC------eeEEEeccCceEEe
Confidence 13446778999999999998877 37899999999865
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=157.48 Aligned_cols=239 Identities=15% Similarity=0.248 Sum_probs=182.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..+.|+++.|+|.. |++|+.|+++++|.++..... .+..+. -...+|.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~---------------------------l~~fPi~~a 263 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIH---------------------------LEKFPIQKA 263 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeee---------------------------eccCcccee
Confidence 56799999999987 999999999999999865432 222211 345789999
Q ss_pred EEec---CeEEEEecCCeEEEEEcCcchhhhhcc-ccc-cccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 149 VVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-KAH-EDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 149 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+|.| ..+++++....++.||+.+.+....-. .++ ...+....+++++ .|+..+..|.|.+.-..
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak---------- 333 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK---------- 333 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh----------
Confidence 9999 489999999999999998876443221 222 3457778889988 69999999999998766
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEE
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVR 302 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 302 (357)
..+.+..++ ..+.|..+.|+.+++.|++++.+|.|.+||++..........-.+-.+.-.|.+.++.+||+|+..|.|.
T Consensus 334 T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 334 TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 445555555 4678999999999999999999999999999988644333332233344567777888999999999999
Q ss_pred EeeCCC---CcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC--CCCeEEe
Q 038568 303 IWQRGK---ENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS--LNGEIKV 355 (357)
Q Consensus 303 vw~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~~ 355 (357)
|||.++ ...++++..+..-...|+++.|+++.+ +||-+| .+..+|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-------iLAiaS~~~knalrL 463 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-------ILAIASRVKKNALRL 463 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-------hhhhhhhccccceEE
Confidence 999754 223467777777778999999999998 887776 3444543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=162.17 Aligned_cols=264 Identities=14% Similarity=0.230 Sum_probs=202.5
Q ss_pred ceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee
Q 038568 31 IISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
.|..++|. |..|+.+..+.+.+||. +.+..++++++ |...|++++|+.|+ +++|+.|..|.+|...-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~-ndG~llqtLKg---HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDT-SDGTLLQPLKG---HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeC-CCccccccccc---ccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 89999998 88888887779999999 99999999999 99999999999987 999999999999986544322
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
+- .|.+.|.|+.|+| ..|++++-+ ..-+|......... .....
T Consensus 89 --kY-----------------------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~ 133 (1081)
T KOG1538|consen 89 --KY-----------------------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSS 133 (1081)
T ss_pred --ee-----------------------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhhe
Confidence 11 8999999999999 777777764 57788875433322 24567
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-----CEEEEEecCCeE
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-----SLLFSGGCDRWI 258 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i 258 (357)
.+.+.+|..|| +++.|-.+|+|.+-+-. ......+....+..++|.+++|+|.. ..+++.....++
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN--------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC--------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 78999999999 59999999999987543 11222233334567899999999943 478888888888
Q ss_pred EEEecccCCceeeeeeccCCccceEEEee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLIN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
.+|.+.. +.+...+. -.-.-.|+++ +|++++.|+.|+.+.+|--+ | ..+.++......|++++..|+++
T Consensus 206 SFy~LsG-~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~PNsQ- 276 (1081)
T KOG1538|consen 206 SFYQLSG-KQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAKPNSQ- 276 (1081)
T ss_pred EEEEecc-eeeccccc---CCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEccCCc-
Confidence 8888763 32211111 1222344444 55699999999999999654 3 45666666788999999999999
Q ss_pred CCCCeEEEEEcCCCCeEEecC
Q 038568 337 ASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++.|+.||+|-.||
T Consensus 277 ------~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 277 ------YVVVGCQDGTIACYN 291 (1081)
T ss_pred ------eEEEEEccCeeehhh
Confidence 999999999998765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=148.13 Aligned_cols=266 Identities=18% Similarity=0.252 Sum_probs=194.5
Q ss_pred eeEEEEe--cceEEEeeCC-ceEEEeccCCcc------------ccceeccccCCCCceEEEEEec-------Cc--eEE
Q 038568 32 ISCLAVH--NSLLYAASLN-EINVFDLISDYS------------HVDTFSNDLSSSGSVKSITFHI-------TK--IFT 87 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~------------~~~~~~~~~~~~~~v~~l~~~~-------~~--l~~ 87 (357)
...+.|+ |..|++-+.| .+++|++ ...- ...+++- .....|...+|-+ +. +++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nl-P~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNL-PFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEec-ChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccceeee
Confidence 3456788 8999999999 9999998 3210 0111111 1346677888863 32 888
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc---cEEEEEEec--CeEEEEecCC
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD---AVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~l~~~~~dg 162 (357)
.+.+.-|++||.-+++........ .|.. ...+++|+| .+|++| ...
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~y----------------------------dh~de~taAhsL~Fs~DGeqlfaG-ykr 179 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAY----------------------------DHQDEYTAAHSLQFSPDGEQLFAG-YKR 179 (406)
T ss_pred ccccCceeeeeccccccccchhhh----------------------------hhHHhhhhheeEEecCCCCeEeec-ccc
Confidence 889999999999999876555433 3333 346899999 555554 568
Q ss_pred eEEEEEc-Ccchhh---hhc---cccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 163 SFKIWNA-SNYKCL---ESV---NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 163 ~i~iwd~-~~~~~~---~~~---~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
+|+++|+ +.|+.- .++ +.+..+.+.+++++|-. .+++|+....+-||.-. ...++..+-+|
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----------~~~pl~llggh 249 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----------GRRPLQLLGGH 249 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC----------CCCceeeeccc
Confidence 9999999 444321 122 12346788999999966 58999998888888765 55677888899
Q ss_pred ccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCcc-ce----EEEeecCceEEEecCCCeEEEeeCC
Q 038568 234 RSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTG-AL----LCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~-~v----~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
.+.|+.+.|.++|+.|++|+. |-.|.+||++.... ++..+..|.. .- ..+...+++|++|+.||.|++||+.
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 999999999999999999986 77899999996554 3344555544 22 2333445599999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+.. ..+..+..|+..++.++++|-.+ +++|++..
T Consensus 328 ~~g--n~~sv~~~~sd~vNgvslnP~mp-------ilatssGq 361 (406)
T KOG2919|consen 328 DLG--NEVSVTGNYSDTVNGVSLNPIMP-------ILATSSGQ 361 (406)
T ss_pred CCC--CcccccccccccccceecCcccc-------eeeeccCc
Confidence 832 45677788999999999999988 88888743
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=162.12 Aligned_cols=267 Identities=14% Similarity=0.144 Sum_probs=194.7
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccce--eeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQH--QLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~ 123 (357)
.+.||++.+...+-..+. -...|.++.|+|.. ++.|+.+|+|.+||++.+... ..+...
T Consensus 223 ~~~vW~~~~p~~Pe~~~~----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~------------ 286 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL------------ 286 (555)
T ss_pred eEEEEecCCCCCceEEEe----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc------------
Confidence 599999944445555555 67899999999754 899999999999999877642 222111
Q ss_pred CCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchh-hhh-----cc-----ccccccEEE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKC-LES-----VN-----KAHEDAVNA 188 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-~~~-----~~-----~~~~~~v~~ 188 (357)
...|..+++.+.|.. .-+++++.||.|..|+++.-.. ... .. ......+++
T Consensus 287 --------------~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~ 352 (555)
T KOG1587|consen 287 --------------EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATS 352 (555)
T ss_pred --------------cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceee
Confidence 127899999999988 4599999999999998875332 111 10 123346888
Q ss_pred EEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 189 VVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 189 ~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
++|.+.. .+++|+.+|.|.--+........ ....+....+..|.++|+++.++|=+..++..+.|.+++||.....
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~ 430 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI 430 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC
Confidence 9998866 69999999999874433111110 0122445566778999999999996655554445999999998732
Q ss_pred CceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
.. ++..+..+...+++++|++. .|+++..||.|.+||+.... ..++.....+....+.+.|++.++ .
T Consensus 431 ~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g~-------~ 500 (555)
T KOG1587|consen 431 AS--PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNGK-------L 500 (555)
T ss_pred CC--cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCCc-------E
Confidence 22 34455567777999999987 89999999999999997642 344555555567788889999898 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
|+.|...|.+++|+
T Consensus 501 lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 501 LAVGDANGTTHILK 514 (555)
T ss_pred EEEecCCCcEEEEE
Confidence 99999999999885
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=137.28 Aligned_cols=285 Identities=16% Similarity=0.205 Sum_probs=190.7
Q ss_pred ceeEEEEe--cceEEEeeCC-ceEEEeccCC----------ccccceeccccCCCCceEEEEEecCceEEeecCCeEEEE
Q 038568 31 IISCLAVH--NSLLYAASLN-EINVFDLISD----------YSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVW 97 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~----------~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vw 97 (357)
.|.+-+++ +++|++|..+ .|-+..+ ++ ..++-.+++ |.++|+.++|..+.|++|+. |.|+-|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl-~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSL-KSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFHDDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEe-hhhhccccCCCCCcceeeccc---cCCCeeeeeeehhheeeccC-ceEEEe
Confidence 35555566 8999999999 9999988 33 123334455 99999999999777887775 999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
..+......-.+.+=...... .+-...-..|+++...| +.++.++.|+.++-||+++|+..
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~-----------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~ 149 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPM-----------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ 149 (325)
T ss_pred eehhhhhhccchhhhhhcCcc-----------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE
Confidence 987544311111000000000 00001234688888888 77777779999999999999999
Q ss_pred hhccccccccEEEEEE-ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEEEe
Q 038568 176 ESVNKAHEDAVNAVVV-SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 253 (357)
..+ .+|.+.+.++.- +.++.+++|+.||++|+||.++.+..+....... ...++.| ...|.+++.+ ..+|++|+
T Consensus 150 r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-~~~lRp~~g~wigala~~--edWlvCGg 225 (325)
T KOG0649|consen 150 REY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-PNLLRPDWGKWIGALAVN--EDWLVCGG 225 (325)
T ss_pred EEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-hhhcCcccCceeEEEecc--CceEEecC
Confidence 999 999999999998 4566899999999999999985443322111111 1112222 3456677665 44777765
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
...+.+|.++..+....+. -...+..+.|..+.+++++..+.|.-|.+.. .............++..|+..
T Consensus 226 -Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 226 -GPKLSLWHLRSSESTCVFP----IPARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTS 296 (325)
T ss_pred -CCceeEEeccCCCceEEEe----cccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCC
Confidence 4569999999877543332 3456778899999999999999999998874 333333333444556655543
Q ss_pred CCCCCCCeEEEEEcCCCCeEEec
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
-- .+|-.++....+.++
T Consensus 297 p~------k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 297 PI------KFISIAGFSNKLHIL 313 (325)
T ss_pred ce------EEEEecccceeeeee
Confidence 22 366667777776654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=156.71 Aligned_cols=213 Identities=16% Similarity=0.281 Sum_probs=150.5
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~ 100 (357)
|.+.|+|++|+ |.+|++|+.| .+.|||. -..++++.+.. +|...|.++.|-|.. +++|..|..|+++|+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~-~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDP-FEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecc-hhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 99999999999 9999999999 9999999 67777777764 599999999999843 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC--- 174 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--- 174 (357)
..+.-..-... ......|..|...|..++..| +.+.+++.||+|+-+|++....
T Consensus 126 ~~~~~~~d~~~--------------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 126 SSKEGGMDHGM--------------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred cccccccccCc--------------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 53321110000 001134458889999998888 7899999999999999986321
Q ss_pred -------hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc-cc-cc------cceeeeeEe-eccc--
Q 038568 175 -------LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN-KE-RK------SRHMLVTTL-VKHR-- 234 (357)
Q Consensus 175 -------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-~~-~~------~~~~~~~~~-~~~~-- 234 (357)
+..+ ...--...++.++|.. +|++|+.|-..++||.+..... .. .. ....++.-+ .+|-
T Consensus 186 ~~~~~~~l~ny-~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNY-NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHh-chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1111 1222456788999976 6999999999999995532111 00 00 000011111 1111
Q ss_pred ---------cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 235 ---------STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 235 ---------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
..++.+.|+|+|.-|++.-....|+++|+.
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 125678899999887777666779999874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=171.97 Aligned_cols=262 Identities=20% Similarity=0.282 Sum_probs=197.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|.|+.|. |.++++|+.| .++||.. ++..++..+.| |.+.|+.++.+.+. +++++.|..|++|.+..+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~-et~~~lAs~rG---hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSM-ETARCLASCRG---HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeec-cchhhhccCCC---CccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 99999999999 9999999999 9999998 99999999999 99999999999776 899999999999999988
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc----
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV---- 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 178 (357)
..+..+ .+|++.|++++|+|.. +.+.||++++||.+- ..+...
T Consensus 265 ~pvsvL------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r~-~~~~y~prp~ 311 (1113)
T KOG0644|consen 265 APVSVL------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDARL-EPRIYVPRPL 311 (1113)
T ss_pred chHHHH------------------------------hccccceeeeccCccc--cCCCCCceEeccccc-cccccCCCCC
Confidence 765433 3999999999999933 888899999999872 211111
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCC
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDR 256 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 256 (357)
.......+.++.+-.++ .+++++.|+.-..|.+.. +..+...+.-+.++.+- .+.+++-.+-
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~----------------l~~~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ----------------LAWRSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhH----------------hhhhccceEEEeccccccccceeeeeee
Confidence 11233556666676666 599999999999888651 01111112222222221 4667777788
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+.+|++.++. ....+.+|...+..+.++|- ...+++.||...|||+-.+-+.+... .+|. .+..-.|+++
T Consensus 376 ~~~vwnl~~g~---l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~gh~-kl~d~kFSqd 449 (1113)
T KOG0644|consen 376 RLCVWNLYTGQ---LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IGHG-KLVDGKFSQD 449 (1113)
T ss_pred Eeeeeecccch---hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--cccc-eeeccccCCC
Confidence 89999999887 45566788888888877654 77899999999999999885443322 4554 4566789999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|. .++....-|.+.|
T Consensus 450 gt-------s~~lsd~hgql~i 464 (1113)
T KOG0644|consen 450 GT-------SIALSDDHGQLYI 464 (1113)
T ss_pred Cc-------eEecCCCCCceEE
Confidence 87 5655555566554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=140.88 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=157.0
Q ss_pred cccccEEEEEEec-------CeEEEEecCCeEEEEEcCcch----hhhhc----cccccccEEEEEEecCC--eEEEEeC
Q 038568 140 EHWDAVSDLVVKQ-------GLMYSVSWDRSFKIWNASNYK----CLESV----NKAHEDAVNAVVVSDNG--VVYTGSA 202 (357)
Q Consensus 140 ~~~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~----~~~~~----~~~~~~~v~~~~~~~~~--~l~~~~~ 202 (357)
.|.-+++.+.|.| ++||+++ -.+++|.+...+ +...+ ...+..++++..|+.-. ++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 7888999999998 3555554 379999987421 11111 13456789999998644 6999999
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccc
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA 281 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 281 (357)
|-+..+||++. + ........+..|...|..++|...+ +.+++.+.||.+|+||++..+....+..-.....+
T Consensus 172 DTTCTiWdie~------~-~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 172 DTTCTIWDIET------G-VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred cCeEEEEEEee------c-cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 99999999982 1 1233466778899999999999855 48899999999999999987655455544444667
Q ss_pred eEEEeecCc---eEEEecCC-CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 282 LLCLINVGD---LLASGSAD-RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 282 v~~~~~~~~---~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...++|+.. ++|+-..| ..|.+.|++.+. .++..+++|.+.|++++|.|... ..|+|+|+|..+.+||
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~------~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSS------SHICTAGDDCQALIWD 316 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCC------ceeeecCCcceEEEEe
Confidence 888998754 77776665 579999999873 66899999999999999999876 4899999999999997
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=151.47 Aligned_cols=248 Identities=14% Similarity=0.203 Sum_probs=177.2
Q ss_pred ecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC------ccccceeccccCCCCceEEEEEecCc-
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD------YSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
.-.....+.| |+++|..++|+ .+.||+||.| +|.||++.+. .+++..+.+ |...|--++|+|.-
T Consensus 70 ~d~~~P~v~G--Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g---H~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 70 MDASYPLVCG--HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG---HQRRVGLVQWHPTAP 144 (472)
T ss_pred cCCCCCCccC--ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee---cceeEEEEeecccch
Confidence 3333344456 99999999999 8899999999 9999998322 245667777 99999999999964
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|++++.|.+|.+|++.+++....+ .|.+.|.++.|+. .++++++.
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l-------------------------------~hpd~i~S~sfn~dGs~l~Ttck 193 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITL-------------------------------DHPDMVYSMSFNRDGSLLCTTCK 193 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeec-------------------------------CCCCeEEEEEeccCCceeeeecc
Confidence 999999999999999999754433 6899999999999 99999999
Q ss_pred CCeEEEEEcCcchhhhhccccccc-cEEEEEEecCCeEEEEe----CCCeEEEEEccccccccccccceeeeeEeecccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHED-AVNAVVVSDNGVVYTGS----ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (357)
|..|+|||.++++.+..- ..|.+ .-..+.|..++.+++.+ .+..+-+||....+ . .-....+. ..+
T Consensus 194 DKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~------e-P~~~~elD-tSn 264 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE------E-PIALQELD-TSN 264 (472)
T ss_pred cceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCccccc------C-cceeEEec-cCC
Confidence 999999999999988876 55543 34456677777666554 47889999976221 1 12223333 345
Q ss_pred ceeEEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCC
Q 038568 236 TVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~ 308 (357)
.|.---|.+|.+.++.++ .|+.||.|.+.........-.......+-..+.+.|+.-+-.+..-..++|.+.+
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccccccchHHHHHHHHHhhc
Confidence 566566788888766555 5999999999876543222222233445566677666444444444444444433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-22 Score=160.60 Aligned_cols=258 Identities=19% Similarity=0.263 Sum_probs=181.2
Q ss_pred ccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--------ccccceeccccCCCCceEEEEEecCc--
Q 038568 18 ASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--------YSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 18 ~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
.++.. |.+.|++++|. ...|++|+.| +|.+|++ +. .+++.+|++ |.++|.|++..+++
T Consensus 288 ~tl~s-----~~d~ir~l~~~~sep~lit~sed~~lk~WnL-qk~~~s~~~~~epi~tfra---H~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRS-----HDDCIRALAFHPSEPVLITASEDGTLKLWNL-QKAKKSAEKDVEPILTFRA---HEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeec-----chhhhhhhhcCCCCCeEEEeccccchhhhhh-cccCCccccceeeeEEEec---ccCceEEEEecCCceE
Confidence 35665 99999999998 7899999999 9999999 32 456788888 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
+++|+.||+|+.|++............. .-..++.+|.+.|+.+++++ ..|++++.||
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~--------------------vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPS--------------------VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcc--------------------hhccceeccccceeeeeecccccceeeecCCc
Confidence 9999999999999876322111110000 00134459999999999999 8899999999
Q ss_pred eEEEEEcCcchhhhhccc-cccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEee-------c
Q 038568 163 SFKIWNASNYKCLESVNK-AHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-------K 232 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~ 232 (357)
+++.|+.....+ .++.. .......++.+-... ..++...-+.-.++++.. ...+..+. .
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev----------~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV----------VSDLLIFESSASPGPR 487 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh----------hhheeeccccCCCccc
Confidence 999999876655 33311 112223344443222 122222223333333321 11111111 1
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
....+..+.++|...+.+++..|+.|+++|..++. .+.....|...++++++.++ +|++++.||.+++|.+...
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k- 563 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK- 563 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccc---cchheeeccceecceeecCCCceEEeecCCceeehhhccch-
Confidence 12346778889999999999999999999999887 45566679999999999887 9999999999999999765
Q ss_pred ceeeeeeecCC
Q 038568 311 CYRCMAFLEGH 321 (357)
Q Consensus 311 ~~~~~~~~~~h 321 (357)
.++.....|
T Consensus 564 --~~~~es~~~ 572 (577)
T KOG0642|consen 564 --TCVLESTAH 572 (577)
T ss_pred --heeeccccc
Confidence 444444444
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=156.42 Aligned_cols=236 Identities=18% Similarity=0.233 Sum_probs=176.3
Q ss_pred eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 64 TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 64 ~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
.+.+ |.+.|.+|...|.+ |++|+.||+++||.+.+++++..+. .
T Consensus 395 vyrG---Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-------------------------------~ 440 (733)
T KOG0650|consen 395 VYRG---HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-------------------------------F 440 (733)
T ss_pred eEec---cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-------------------------------e
Confidence 4455 99999999999987 9999999999999999998766553 3
Q ss_pred cccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---------------------------------hh---hccccc
Q 038568 142 WDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC---------------------------------LE---SVNKAH 182 (357)
Q Consensus 142 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---------------------------------~~---~~~~~~ 182 (357)
.+.|.|++|+| ..+++++.+..+.+-+..-|.. .. .+...|
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec
Confidence 45788888888 3333333333455554322210 00 011346
Q ss_pred cccEEEEEEecCC-eEEEEeC---CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 183 EDAVNAVVVSDNG-VVYTGSA---DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 183 ~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
...|..+.|+..| +|++... ...|.|.++. .......+....+.|.++.|+|...+|++++. ..|
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS----------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~v 589 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS----------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSV 589 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecc----------cccccCchhhcCCceeEEEecCCCceEEEEec-cce
Confidence 7789999999999 6777654 4578899987 22333445556678999999999888988876 459
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
+|||+.... ..+.+......+..++.++ +-|+.|+.|+.+..+|+.-.. ++.+.++.|...+++++|++.-+
T Consensus 590 RiYdL~kqe---lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryP- 663 (733)
T KOG0650|consen 590 RIYDLSKQE---LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYP- 663 (733)
T ss_pred EEEehhHHH---HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccc-
Confidence 999998755 3344444556676666665 799999999999999998652 56788899999999999999998
Q ss_pred CCCCeEEEEEcCCCCeEEec
Q 038568 337 ASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~w 356 (357)
++++|+.||++.|+
T Consensus 664 ------Lfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 664 ------LFASGSDDGTVIVF 677 (733)
T ss_pred ------eeeeecCCCcEEEE
Confidence 99999999999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=133.85 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=177.4
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeec--CCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ--DCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~--d~~i~vwd~~~~~ 103 (357)
....+..+.|+ ...|..|+.|--++|+. ++......... ....|..+-|+.+.++..+. -+.+++.++....
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~-~~~~k~~~~~~---~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSC-SPFEKCFSKDT---EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEec-CchHHhhcccC---CCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence 45567788888 66777777778899998 55444222222 55678888899888444443 3458999988776
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcccc--
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKA-- 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 181 (357)
.+..+ ....+|.++.++.+.|+++-.+. |.|||+++.+.+.++...
T Consensus 80 ~ICe~-------------------------------~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 80 TICEI-------------------------------FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP 127 (391)
T ss_pred eEEEE-------------------------------ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC
Confidence 55444 33568999999997777777654 999999999999988433
Q ss_pred ccccEEEEEEecCC-eEEEE--eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe-
Q 038568 182 HEDAVNAVVVSDNG-VVYTG--SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW- 257 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 257 (357)
+...+.++..++.+ +++.- ...|.|.+||.. ..++...+..|++++.+++|+++|.+||++++.|+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceE
Confidence 45556666666665 55543 346999999987 66778888999999999999999999999999987
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
||||.+.+++.+..++.-.- ...|.+++|+++ +|++.+..++|++|.+++
T Consensus 198 IRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 79999999987665554222 445688888887 899999999999998864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=144.28 Aligned_cols=223 Identities=17% Similarity=0.221 Sum_probs=169.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCc---eEEEEEecCc-eEEeecCCeEEEEec-CCccceeeeeecC
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS---VKSITFHITK-IFTAHQDCKIRVWKI-TASRQHQLVSTLP 112 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~---v~~l~~~~~~-l~~~~~d~~i~vwd~-~~~~~~~~~~~~~ 112 (357)
.+++|+.+.+ -|++||. -+++....+.+.. |... ..+++|+||+ -+.++....|+++|+ +.++......++.
T Consensus 123 t~l~a~ssr~~PIh~wda-ftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDA-FTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred cceeeeccccCceeeeec-cccccccchhhhh-hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 4688888899 9999999 8999888887644 4443 4689999998 555666789999999 4443322222211
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.. -.+..+-+.+++|+| ..++.|+....+-|+.-....++..+ .+|.+.|+.+
T Consensus 201 ~~-----------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL 256 (406)
T KOG2919|consen 201 KG-----------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHL 256 (406)
T ss_pred cc-----------------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeE
Confidence 00 014567899999999 68999999999999998888899888 8999999999
Q ss_pred EEecCC-eEEEEeC-CCeEEEEEccccccccccccceeeeeEeecccc-ceeEE--EEecCCCEEEEEecCCeEEEEecc
Q 038568 190 VVSDNG-VVYTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-TVNAL--ALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 190 ~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+|.++| +|++|.. |..|..||+| ....++..+..|.. .-..| ...|++++|++|+.||.|++||++
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR---------~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIR---------YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeeh---------hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 999999 6888765 7899999998 24456666666655 22234 446799999999999999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
+... ....+..+...+..++++|- ++++++..
T Consensus 328 ~~gn--~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 328 DLGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCC--cccccccccccccceecCcccceeeeccCc
Confidence 7433 33455668888999999998 56665543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-18 Score=149.86 Aligned_cols=275 Identities=29% Similarity=0.515 Sum_probs=205.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc-ccceeccccCCC-CceEEEEE-ecCc---eEEe-ecCCeEEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS-HVDTFSNDLSSS-GSVKSITF-HITK---IFTA-HQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~-~~~~~~~~~~~~-~~v~~l~~-~~~~---l~~~-~~d~~i~vw 97 (357)
|...|.++.+. +..++.++.| .+.+|+. .... ....+.. +. ..+..+.+ .++. ++.. ..|+.+.+|
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDL-DNGEKLIKSLEG---LHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEc-CCCceeEEEEec---cCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 99999999999 8888888888 9999999 6655 6666664 34 37777777 5544 3443 448999999
Q ss_pred ecCC-ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcch
Q 038568 98 KITA-SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYK 173 (357)
Q Consensus 98 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~ 173 (357)
+... ......+ ..|...|..++|+| ..+++++. |+.+++|+...++
T Consensus 140 ~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 140 DLSTPGKLIRTL------------------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred EecCCCeEEEEE------------------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence 9987 3322222 27889999999999 57778875 9999999999877
Q ss_pred hhhhccccccccEEEEEEecCCe-EEEE-eCCCeEEEEEccccccccccccceeeee-EeeccccceeEEEEecCCCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGV-VYTG-SADGRIRVWERSVVDHNKERKSRHMLVT-TLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+..+ ..|...+.+++++|++. ++++ +.|+.+++||.. ...... .+..|.... ...|+|++.+++
T Consensus 190 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 257 (466)
T COG2319 190 PLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS----------TGKLLRSTLSGHSDSV-VSSFSPDGSLLA 257 (466)
T ss_pred eEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC----------CCcEEeeecCCCCcce-eEeECCCCCEEE
Confidence 78777 66899999999999884 4444 899999999865 233333 566777665 448999998899
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
+++.|+.+++|++..... ......+|...+.++.+.| ..+++++.|+.+++|+..+........ ...|...+..+
T Consensus 258 ~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL 334 (466)
T ss_pred EecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence 999999999999997765 1222267888999999987 377778888999999988763222222 34777789999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.+++. ....++..|+.+++|+
T Consensus 335 ~~~~~~~------~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 335 SFSPDGS------LLVSGGSDDGTIRLWD 357 (466)
T ss_pred EECCCCC------EEEEeecCCCcEEeee
Confidence 9932313 1444446888888885
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=155.68 Aligned_cols=238 Identities=19% Similarity=0.268 Sum_probs=167.7
Q ss_pred cceEEE--eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecCCccceeeeeecC
Q 038568 39 NSLLYA--ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 39 ~~~l~t--~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 112 (357)
..++|+ ++.. .|-||++.+.++.....-........|+++.|.|= +|+.++.||.|++|.+..+.......+..
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 444443 3445 99999995555543322211125678999999983 39999999999999998765443332221
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.++..|...|+++.|+| +.|+++++|-+|++||+.+++....+ .+|.+.|..+
T Consensus 671 -----------------------~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~ 726 (1012)
T KOG1445|consen 671 -----------------------KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-VGHTDQIFGI 726 (1012)
T ss_pred -----------------------eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-ccCcCceeEE
Confidence 44558999999999999 99999999999999999999998888 8999999999
Q ss_pred EEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEEEecCC----eEEEEec
Q 038568 190 VVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFSGGCDR----WIVVWER 263 (357)
Q Consensus 190 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~ 263 (357)
+|+|+| ++++.+.||+|++|+.+. ..+++++-.+- ...-..+.|--+|+++++.+.|. +|.+||.
T Consensus 727 AWSpdGr~~AtVcKDg~~rVy~Prs---------~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDGTLRVYEPRS---------REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred EECCCCcceeeeecCceEEEeCCCC---------CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 999999 599999999999999882 12223222211 12234577888999988887654 5888887
Q ss_pred ccCCce-eeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc
Q 038568 264 ERDHRM-VFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~ 310 (357)
++-... .....+.... .++--.++.+ ++++|-.|..|.+|.+-...
T Consensus 798 q~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 798 QTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred hhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 754311 0111111111 1111123333 88999999999999987653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=158.59 Aligned_cols=298 Identities=18% Similarity=0.240 Sum_probs=199.7
Q ss_pred ccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-------cccceeccccCCCCceEEEEE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-------SHVDTFSNDLSSSGSVKSITF 80 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-------~~~~~~~~~~~~~~~v~~l~~ 80 (357)
+.+..+..|.. |...|..++.+ +.+++|||.| +|++|+. ... +...++.. ....+.++..
T Consensus 1036 p~G~lVAhL~E-----hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~-~k~~~~~~s~rS~ltys~---~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1036 PRGILVAHLHE-----HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNL-RKLEGEGGSARSELTYSP---EGSRVEKVTM 1106 (1431)
T ss_pred ccceEeehhhh-----ccccccceeecCCCCceEEEecCCceEEEeee-hhhhcCcceeeeeEEEec---cCCceEEEEe
Confidence 45677777876 99999999998 5899999999 9999998 431 11222322 4667888877
Q ss_pred ecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccc-cccccEEE-EEEec---C
Q 038568 81 HITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL-EHWDAVSD-LVVKQ---G 153 (357)
Q Consensus 81 ~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~---~ 153 (357)
.+++ +|.++.||.|++.+++............ ++.. ...+.+.+ -+|.. .
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-----------------------ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-----------------------RIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeee-----------------------ecccccCCCceEEeecccccccc
Confidence 7765 9999999999999998632111110000 0000 11223333 33333 3
Q ss_pred -eEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE-
Q 038568 154 -LMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT- 229 (357)
Q Consensus 154 -~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~- 229 (357)
.++.+..-+.|..||++......+++ ....+.|++++.+|.+ .++.|...|.+.+||+| -..++..
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR----------F~~~i~sw 1233 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR----------FRVPILSW 1233 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee----------cCceeecc
Confidence 78888889999999999887777663 3345789999999988 69999999999999998 2333333
Q ss_pred eeccccceeEEEEec---CCCEEEEEe--cCCeEEEEecccCCceeeeeecc----------------CC-ccceEEEee
Q 038568 230 LVKHRSTVNALALNG---DGSLLFSGG--CDRWIVVWERERDHRMVFAEALW----------------GH-TGALLCLIN 287 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~---~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~----------------~~-~~~v~~~~~ 287 (357)
..++..+++.+..+| .....++++ ..+.|.+|++.++.....+..-. .+ ...+.+.-.
T Consensus 1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 235567888888877 224444444 47889999999876443332210 00 111222233
Q ss_pred cCc-eEEEecCCCeEEEeeCCCCcce--------------------------e-------------------eeee----
Q 038568 288 VGD-LLASGSADRTVRIWQRGKENCY--------------------------R-------------------CMAF---- 317 (357)
Q Consensus 288 ~~~-~l~~~~~dg~i~vw~~~~~~~~--------------------------~-------------------~~~~---- 317 (357)
.++ .+.+|+.|..|+.||...+... + ....
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~ 1393 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPG 1393 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccC
Confidence 333 8999999999999997643210 0 0000
Q ss_pred ----ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 ----LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ----~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
-..|.++|+++++..... .+|++++.||.|++|.
T Consensus 1394 ~~~ps~~H~d~Itdma~~~~~q------~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1394 PSDPSTYHHDPITDMATLKSEQ------PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCCcccccchhhhhhhhccCc------cEEEEecCCCeeeecC
Confidence 124778899998877654 4999999999999994
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=140.36 Aligned_cols=261 Identities=18% Similarity=0.229 Sum_probs=183.3
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.++..+...-+.|.+ |-.+|++++|| |+.|+|+|.| .|.+||+ ..+.+++.++ ...+|..+.|+|..
T Consensus 49 I~D~~T~~iar~lsa-----H~~pi~sl~WS~dgr~LltsS~D~si~lwDl-~~gs~l~rir----f~spv~~~q~hp~k 118 (405)
T KOG1273|consen 49 IYDFDTFRIARMLSA-----HVRPITSLCWSRDGRKLLTSSRDWSIKLWDL-LKGSPLKRIR----FDSPVWGAQWHPRK 118 (405)
T ss_pred EEEccccchhhhhhc-----cccceeEEEecCCCCEeeeecCCceeEEEec-cCCCceeEEE----ccCccceeeecccc
Confidence 344555666677776 99999999999 9999999999 9999999 8889999998 88999999999864
Q ss_pred ---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 85 ---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 85 ---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
.++.-.+..-.+-++..+.. ..+..... . .....-.+..|.+ +++++|.
T Consensus 119 ~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d------------~-------------dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 119 RNKCVATIMEESPVVIDFSDPKH-SVLPKDDD------------G-------------DLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred CCeEEEEEecCCcEEEEecCCce-eeccCCCc------------c-------------ccccccccccccCCCCEEEEec
Confidence 44444445555666654321 11111000 0 0011112224566 9999999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee--ccccc
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRST 236 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 236 (357)
..|.+.++|..+.+++..+.......|..+.++..| .|+.-+.|+.||.|+++........ ...++...++ ..+..
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~-~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD-GEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc-CCcChhHHHHHHHhhhh
Confidence 999999999999999998843334789999999988 5999999999999998732221000 0111111111 12234
Q ss_pred eeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCc-cceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 237 VNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHT-GALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
-.++.|+.+|.+++.++. ...++||.-..+. +++.+.|.+ .....+.|++- .+++- ..|.+++|.....
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 467889999999988774 5579999999887 555666666 45677889887 44444 7889999987654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=136.21 Aligned_cols=293 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc---cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY---SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~ 99 (357)
-..+|+|.+|+ +..+|++-.. .|.||.. ... +..+++.. |...|+.++|+|.. |++++.|..-.||..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~-~~~~~w~~~htls~---Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSM-LGADLWEPAHTLSE---HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEe-cCCCCceeceehhh---hCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34689999999 7888888888 9999987 443 56777777 99999999999865 999999999999998
Q ss_pred C-CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh-
Q 038568 100 T-ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL- 175 (357)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~- 175 (357)
. .++....+. +..+....+++.|+| +.+++|+....|.||=++...--
T Consensus 85 ~~~~~Wkptlv----------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 85 PSGGTWKPTLV----------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred CCCCeecccee----------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 4 433322222 227788999999999 99999999999999988754421
Q ss_pred --hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc--ccc------cccceeeeeEeeccccceeEEEEec
Q 038568 176 --ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH--NKE------RKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 176 --~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~------~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+.+...+...|+++.|+|++ .|++|+.|+.+++|..-.-.. .+. ...-++++.++....+.+..+.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 22335678889999999999 699999999999997532111 111 0111233344445668899999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCC------------C--
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGK------------E-- 309 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~------------~-- 309 (357)
+|..|+-.+.|..+.+-|.....+. ........-+.+++.|-.+ .++.++.|..=.++.... +
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~~~--v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~ 294 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPSER--VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKA 294 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCchh--ccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccc
Confidence 9999999999999999998766431 1111111244455555333 444444442222221110 0
Q ss_pred cc-------------------eeeeee--ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 310 NC-------------------YRCMAF--LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 310 ~~-------------------~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.. .+.... -..|...|+.|.....+. ..-..+-+.+.||.+-+||
T Consensus 295 s~s~~lt~a~~kF~~~d~k~~~~~~~~~~~~~h~N~i~~l~~~~~~~---~~i~~f~t~g~Dg~~viw~ 360 (361)
T KOG1523|consen 295 SSSSPLTSAWRKFLGMDRKGRTENDRSARWGAHQNCITSLRPFAGGK---GKITKFSTSGLDGKLVIWD 360 (361)
T ss_pred cCCchhHHHHHHHhcccccccccccccccchHhHhhhhhhhecccCC---cceEEEEecCccceEEEec
Confidence 00 000000 134666677665544322 2234688999999999997
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=147.29 Aligned_cols=212 Identities=17% Similarity=0.227 Sum_probs=141.2
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
..+.-|...|.++.|++ .+|++|+..|.+.+|.+.+++ +++...-.++|..+.++||+ ..+....|+.|.+....
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 34457888999999999 899999999999999999988 44437788999999999999 57777889999998875
Q ss_pred ccccccccccceeeeeE-eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee-------------------
Q 038568 213 VVDHNKERKSRHMLVTT-LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA------------------- 272 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------- 272 (357)
.......-.....+... -...++-.+.++++|..+.++-.+..|.|.+||+.+.+.+..+
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 33221111100000000 1112333456666775556666666777777766433221111
Q ss_pred ----------------------------------------------eeccCCccceEEEeecC----ceEEEecCCCeEE
Q 038568 273 ----------------------------------------------EALWGHTGALLCLINVG----DLLASGSADRTVR 302 (357)
Q Consensus 273 ----------------------------------------------~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~ 302 (357)
.....|.....+..+.+ +..++++.||.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 01123444333333221 2789999999999
Q ss_pred EeeCCCC-------cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKE-------NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|-+... ..+.+...-.-|..++++++|+.||. +++.+.|++|.+||
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs--------lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS--------LLAVSFDDTITIWD 536 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc--------EEEEecCCEEEEec
Confidence 9988321 23455555556899999999999996 66777899999998
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=152.15 Aligned_cols=241 Identities=18% Similarity=0.306 Sum_probs=166.2
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCc-----cceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITAS-----RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
|...|+.++|.|.. |++++.||+|++|++... ..+..+. .|.+|.+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~---------------------------tfraH~g 345 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL---------------------------TFRAHEG 345 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE---------------------------EEecccC
Confidence 88889999999876 999999999999999431 1122222 2349999
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCc---------chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEc
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASN---------YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~ 211 (357)
+|.|++..+ ..+++|+-||+|+.|++.. ...+.....+|...++.+++++.. +|++++.||++++|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 999999999 8999999999999996542 112222227899999999999876 6999999999999998
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEecccCCceeeeeecc--C--CccceEEEe
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALW--G--HTGALLCLI 286 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~--~~~~v~~~~ 286 (357)
. .... +........+...++++-... ...++...-+.-.++++.....+..+.... + ....+..+.
T Consensus 426 ~------~~~~---~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 426 T------EESP---CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred C------CcCc---cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 6 1111 111111122333455554322 122222222333333333333222211110 0 112234445
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+. +.+++..|+.|+++|..++ ..+.....|...++++++.|++. +|++++.||.+++|.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~---~~l~s~~a~~~svtslai~~ng~-------~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTG---KILHSMVAHKDSVTSLAIDPNGP-------YLMSGSHDGSVRLWK 559 (577)
T ss_pred ecCCCCeeEecccCCceeccccccc---ccchheeeccceecceeecCCCc-------eEEeecCCceeehhh
Confidence 5554 8999999999999999997 77888889999999999999999 999999999999994
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=125.39 Aligned_cols=238 Identities=14% Similarity=0.165 Sum_probs=167.5
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.|.+-+++|.. |++|..+|.|.+..+.+-...... +.+...+ -...+|.++++.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~---------------~~gk~~i-----v~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE---------------PPGKLKI-----VPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC---------------CCCCcce-----eeccccCCCeeeeeee
Confidence 34555677765 999999999999998643211000 0000000 0114899999999999
Q ss_pred cCeEEEEecCCeEEEEEcCcchh------hhhcc-cc-----ccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc
Q 038568 152 QGLMYSVSWDRSFKIWNASNYKC------LESVN-KA-----HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 152 ~~~l~~~~~dg~i~iwd~~~~~~------~~~~~-~~-----~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
..+|++|+. |.|+-|..+.... +.... .. .-..|+++...|.. .++.++.|+.++.||++
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE------ 144 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE------ 144 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec------
Confidence 988888875 9999998764332 11111 11 12468899998865 57777799999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc------CC-ccceEEEeecCce
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW------GH-TGALLCLINVGDL 291 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~ 291 (357)
.++..+.+++|...|.++.--.....+++|++||++|+||.++.+....+.... .| ...|.+++-+.++
T Consensus 145 ----~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edW 220 (325)
T KOG0649|consen 145 ----DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDW 220 (325)
T ss_pred ----CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCce
Confidence 678889999999999999985555679999999999999999998766554332 22 3457888999999
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+++|+.- .+.+|.++..+.. ++..+. .+|..+.|..+ .++++|..+.|.-|
T Consensus 221 lvCGgGp-~lslwhLrsse~t-~vfpip---a~v~~v~F~~d---------~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 221 LVCGGGP-KLSLWHLRSSEST-CVFPIP---ARVHLVDFVDD---------CVLIGGEGNHVQSY 271 (325)
T ss_pred EEecCCC-ceeEEeccCCCce-EEEecc---cceeEeeeecc---------eEEEeccccceeee
Confidence 9888754 5999999987322 233333 45777888777 56666655555544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=141.46 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=177.2
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEE-ec---------CceEEeecCCeEE
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HI---------TKIFTAHQDCKIR 95 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~---------~~l~~~~~d~~i~ 95 (357)
|...|.|+.|+ ..-+..++.| .+.+|.- -+......+.. ...-|....+ -+ +.|+.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~-~~~~s~~~~~~---p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSD-VSRDSVEVAKL---PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeec-ccchhhhhhhC---CcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 88889999998 4444444555 5555443 22222222222 1222211111 11 1289999999998
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
+.+-. ++....+ ..|.+.+.+-.|++ .-|++++.||.|++|. ++|.
T Consensus 89 il~k~-~rVE~sv------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGM 136 (737)
T KOG1524|consen 89 ILNKS-ARVERSI------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGM 136 (737)
T ss_pred Eeccc-chhhhhh------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccch
Confidence 88743 2222222 28999999999999 7899999999999998 4666
Q ss_pred hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
...++ .....+|.|++|.|+..=+.-+..+.+.+=.+. ....+...+.|.+-|.++.|++..+++++|+
T Consensus 137 LRStl-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 137 LRSTV-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLA----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred HHHHH-hhcCceeEEEEECCCCCceEEecCCeEEEeecc----------cccceeEEeccCcEEEEeecCccccceeecC
Confidence 66666 567889999999998842222334566655554 3345567789999999999999999999999
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+|-..+|||.... .+.....|..+|++++|+|+.+...++-+++| .-+...+.|..++|++|
T Consensus 206 ED~kfKvWD~~G~----~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R--------------~~~p~~GSifnlsWS~D 267 (737)
T KOG1524|consen 206 EDFRFKIWDAQGA----NLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR--------------FSSPRVGSIFNLSWSAD 267 (737)
T ss_pred CceeEEeecccCc----ccccCChhccceeeeeeccccceeeeeeeeee--------------ecCCCccceEEEEEcCC
Confidence 9999999998743 23345579999999999998443333333444 12234678999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|. .++.|...|.+.+
T Consensus 268 GT-------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 268 GT-------QATCGTSTGQLIV 282 (737)
T ss_pred Cc-------eeeccccCceEEE
Confidence 98 8999988887643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=136.08 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=171.4
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceEEEEEec
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVKSITFHI 82 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~ 82 (357)
+...+++.+..+++ |...++.+.|. +..+.+|+.| .|++||+ ........+.-.. +. .+..+++..-
T Consensus 55 yd~~tg~~l~~fk~-----~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~-Rs~~e~a~~~~~~-~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 55 YDKGTGQLLEEFKG-----PPATTNGVRFISCDSPHGVISCSSDGTVRLWDI-RSQAESARISWTQ-QSGTPFICLDLNC 127 (376)
T ss_pred EeccchhhhheecC-----CCCcccceEEecCCCCCeeEEeccCCeEEEEEe-ecchhhhheeccC-CCCCcceEeeccC
Confidence 44456778888887 77788888887 6789999999 9999999 7655555544322 33 5667777763
Q ss_pred C-c-eEEee----cCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 83 T-K-IFTAH----QDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 83 ~-~-l~~~~----~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
+ + +++|. .+-.+.+||++..++ +..+. ..|.+.|+++.|+|
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-----------------------------eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-----------------------------ESHNDDVTQLRFHPSDP 178 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhh-----------------------------hhccCcceeEEecCCCC
Confidence 3 3 44443 366799999998765 33222 38999999999999
Q ss_pred CeEEEEecCCeEEEEEcCcch---hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
++|++||.||-|.++|++... .+... -.+...|.++.|..++ ++.+-+......+|+++..+............
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 999999999999999997542 22222 3678889999999998 69999999999999998433211100000000
Q ss_pred eEeec--cccceeEEEEec-CCCEEEEEec-CCeEEEEecc---cCCceeeeeeccC-CccceEEEeec--CceEEEecC
Q 038568 228 TTLVK--HRSTVNALALNG-DGSLLFSGGC-DRWIVVWERE---RDHRMVFAEALWG-HTGALLCLINV--GDLLASGSA 297 (357)
Q Consensus 228 ~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-dg~i~vwd~~---~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~ 297 (357)
..... .-..+-.. .+| +...++.++. -|...++-+. ++........+.+ |..-|+.+.|. ++++.+|++
T Consensus 258 ~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE 336 (376)
T KOG1188|consen 258 DDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE 336 (376)
T ss_pred hhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC
Confidence 00000 00111111 123 4444444444 5555555443 3333334445555 55566777665 349999999
Q ss_pred CCeEEEeeCC
Q 038568 298 DRTVRIWQRG 307 (357)
Q Consensus 298 dg~i~vw~~~ 307 (357)
||.+.+|...
T Consensus 337 DG~l~~Wk~~ 346 (376)
T KOG1188|consen 337 DGLLQAWKVE 346 (376)
T ss_pred CceEEEEecC
Confidence 9999999853
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-20 Score=159.90 Aligned_cols=237 Identities=18% Similarity=0.325 Sum_probs=185.6
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.++.+.+ |...|+|+.|...+ +++|+.|..++||..+++.+.....
T Consensus 181 k~ikrLlg---H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r---------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLG---HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR---------------------------- 229 (1113)
T ss_pred HHHHHHHh---hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------------------
Confidence 44556666 99999999999876 9999999999999998886554433
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|.+.|+.++.+. .++++++.|..|++|.+..+.++..+ .+|.+.|++++|+|-. +.+.||++++||.+..-
T Consensus 230 --Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~---sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 230 --GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP 303 (1113)
T ss_pred --CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc---cCCCCCceEeccccccc
Confidence 9999999999988 78899999999999999999999999 9999999999999964 78899999999987110
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceE
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLL 292 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 292 (357)
. ...+...-.....-+.++.|...+.-+++++.|+.-..|.+.... .+...+.-+...+ .+.
T Consensus 304 ~------~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 304 R------IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------WRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred c------ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------hhccceEEEeccccccccc
Confidence 0 001000011123456777888888899999999998888765221 1222222222222 367
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++-.+-.+++|++.++ ..++.+.+|...+..+.++|-.. +...+++.||...|||
T Consensus 369 ~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpfn~------ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPFNP------RIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCCCc------HhhhhccCCCceEeee
Confidence 77888899999999998 77888899999999999999877 4667999999999997
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=137.61 Aligned_cols=280 Identities=29% Similarity=0.491 Sum_probs=202.1
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
......+.. |...|.+++|+ +.++++++. | .+++|+. .....+..+.+ |...|.+++|+|++ ++.
T Consensus 145 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 145 GKLIRTLEG-----HSESVTSLAFSPDGKLLASGSSLDGTIKLWDL-RTGKPLSTLAG---HTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred CeEEEEEec-----CcccEEEEEECCCCCEEEecCCCCCceEEEEc-CCCceEEeecc---CCCceEEEEEcCCcceEEE
Confidence 344555565 99999999999 668888885 8 9999999 77788888887 99999999999876 444
Q ss_pred -eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 88 -AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 88 -~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
++.|+.+++||...+..... .+ ..|.... ...|.+ ..+++++.|+.+
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~--~~---------------------------~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRS--TL---------------------------SGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred EecCCCcEEEEECCCCcEEee--ec---------------------------CCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 48999999998774443321 11 1555554 337777 588899999999
Q ss_pred EEEEcCcchh-hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE--eeccccceeEE
Q 038568 165 KIWNASNYKC-LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT--LVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 240 (357)
++|+...... +..+ ..|...+.++.+.|++ .+++++.|+.+.+||.+. ...... ...|...+..+
T Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 266 RLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET----------GKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred EEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC----------CceEEEeeecccCCceEEE
Confidence 9999987665 4444 5678999999999966 577788888999998761 222222 23677788999
Q ss_pred EEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-c-eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 241 ALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-D-LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 241 ~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.|.+++..++.+ ..|+.+.+|+..... .......... +..+.+.+ . ....+..++.+.+|+.... .....
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 407 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---SLLRN 407 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccC---eeeee
Confidence 993332455555 678999999998776 1112211221 44554444 2 3334788999999999986 33333
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...+...+....+.+++. .+++++.++.+++|+
T Consensus 408 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 440 (466)
T COG2319 408 LDGHTSRVTSLDFSPDGK-------SLASGSSDNTIRLWD 440 (466)
T ss_pred ccCCCCcEEEEEECCCCc-------EEEEecCCCcEEEEe
Confidence 333327889999999998 899999999999985
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-20 Score=145.85 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=197.1
Q ss_pred eeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceee
Q 038568 32 ISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
-..+.|+ |.+|+.|+.. .|-.+|+ .++.+...+. -...|.++.|..+. +++......+.|||-. +..+.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw-~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDW-VTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeec-ccceeeeeee----hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee
Confidence 3456777 9999999998 9999999 8888888887 78899999998765 6666667899999965 444455
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccccccc
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA 185 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (357)
++. ...|..+.|.| -+|++++..|.++--|+.+|+.+..+ ....+.
T Consensus 206 lk~-------------------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~ 253 (545)
T KOG1272|consen 206 LKR-------------------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGR 253 (545)
T ss_pred hhh-------------------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCc
Confidence 532 35788999999 67888889999999999999999999 777788
Q ss_pred EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+..++-+|-+ .+-+|...|+|.+|... ..+++..+..|.++|.++++.++|+++++.+.|..++|||++
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 8999999966 68899999999999987 566777788899999999999999999999999999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCC-CCc-ceeeeeeecCCcCceEEEEEeeCCC
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG-KEN-CYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~-~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.-.++....+ ..+...++++..-+++.+....|.+|.-. .+. .....+--..-.++|..+.|+|-..
T Consensus 324 ~~~ql~t~~t----p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 324 NFYQLHTYRT----PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred cccccceeec----CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 8765433332 23456678888866666777789999532 211 0111111111235899999999776
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-17 Score=124.99 Aligned_cols=194 Identities=14% Similarity=0.252 Sum_probs=156.3
Q ss_pred CccceeEEEEecceEEEeeCC---ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVHNSLLYAASLN---EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d---~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
-.-.|.-+-|+..++|..+.+ .+++.++ .....+..+. ...+|.++.++.++|+.+-.+. |.|||+++.+.
T Consensus 45 ~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~----fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl 118 (391)
T KOG2110|consen 45 EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHF-KKKTTICEIF----FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL 118 (391)
T ss_pred CCeEEEEeecccceeEEEecCCCceEEEEEc-ccCceEEEEe----cCCceEEEEEccceEEEEEccc-EEEEeccccee
Confidence 345677788888888887755 6999999 7778888777 7789999999999988887754 99999999887
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEE--ecCCeEEEEEcCcchhhhhccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV--SWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~--~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+..+...+ .+...+.++.+++ .+++-= ...|.|.+||..+-+.+..+ .
T Consensus 119 LhTI~t~~---------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-~ 170 (391)
T KOG2110|consen 119 LHTIETTP---------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-N 170 (391)
T ss_pred ehhhhccC---------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-E
Confidence 77776543 3445566666666 355532 23689999999999999999 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCe-EEEEEccccccccccccceeeeeEeecc--ccceeEEEEecCCCEEEEEecCC
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGR-IRVWERSVVDHNKERKSRHMLVTTLVKH--RSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
.|.+.+.+++|+++| +|++++..|+ ||+|.+. .++.+.+++.. ...|.+++|+|++.+|++.+..+
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~----------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP----------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcC----------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 999999999999999 6999999887 6899987 44555555533 34588999999999999999999
Q ss_pred eEEEEeccc
Q 038568 257 WIVVWERER 265 (357)
Q Consensus 257 ~i~vwd~~~ 265 (357)
+|++|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-17 Score=133.82 Aligned_cols=272 Identities=10% Similarity=0.149 Sum_probs=163.1
Q ss_pred eEEEe-eCC-ceEEEeccCC-cc--ccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCccceeeeeecC
Q 038568 41 LLYAA-SLN-EINVFDLISD-YS--HVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 41 ~l~t~-~~d-~i~iw~~~~~-~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~~~~~~~~~~~ 112 (357)
+++++ ..+ .|++|++ .+ ++ .++.+. +.+....++++|++ |+++ ..++.|.+|+++...........
T Consensus 3 ~~y~~~~~~~~I~~~~~-~~~g~l~~~~~~~----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~- 76 (330)
T PRK11028 3 IVYIASPESQQIHVWNL-NHEGALTLLQVVD----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES- 76 (330)
T ss_pred EEEEEcCCCCCEEEEEE-CCCCceeeeeEEe----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-
Confidence 34444 566 9999999 53 32 444444 44667789999987 5444 45888999999732222222211
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcch-hhhhcc-ccccccEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYK-CLESVN-KAHEDAVN 187 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~-~~~~~~-~~~~~~v~ 187 (357)
........++++| +++++++ .++.|.+|++++.. ...... ..+.....
T Consensus 77 ---------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~ 129 (330)
T PRK11028 77 ---------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH 129 (330)
T ss_pred ---------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc
Confidence 1122356788998 6666665 48899999997432 211110 12234567
Q ss_pred EEEEecCC-eE-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEecc
Q 038568 188 AVVVSDNG-VV-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERE 264 (357)
Q Consensus 188 ~~~~~~~~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 264 (357)
.++++|++ ++ ++...++.|.+||+....... .......... .......++|+|++++++++.. ++.|.+|+++
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~---~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV---AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc---ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 78899998 44 556667999999997211000 0000001111 1234678999999999988876 8999999997
Q ss_pred cC-CceeeeeeccC------CccceEEEeecCc--eEEEec-CCCeEEEeeCCCCc-ceeeeeeecCCcCceEEEEEeeC
Q 038568 265 RD-HRMVFAEALWG------HTGALLCLINVGD--LLASGS-ADRTVRIWQRGKEN-CYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 265 ~~-~~~~~~~~~~~------~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.. ........+.. +......+.++|+ +++++. .++.|.+|++.... ..+.+..... ......+.++|+
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d 284 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS 284 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC
Confidence 42 12222222211 1112234555554 777765 47899999996542 2223333322 134568899999
Q ss_pred CCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 334 SSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
++ +|+++. .+++|.+|+
T Consensus 285 g~-------~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 285 GK-------YLIAAGQKSHHISVYE 302 (330)
T ss_pred CC-------EEEEEEccCCcEEEEE
Confidence 98 666555 589999983
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=148.05 Aligned_cols=238 Identities=20% Similarity=0.253 Sum_probs=167.1
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
+-..+.|+|=. ++++.....|+|||.+.++....+.... .....|+++.+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~---------------------------~~~t~Vs~l~li 1118 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA---------------------------FPDTRVSDLELI 1118 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC---------------------------CCCCccceeeee
Confidence 45567777643 8888877899999999887655444321 334678888887
Q ss_pred c----CeEEEEecCCeEEEEEcCc-----chhhhhcc------ccccccEEEEEEecC-CeEEEEeCCCeEEEEEccccc
Q 038568 152 Q----GLMYSVSWDRSFKIWNASN-----YKCLESVN------KAHEDAVNAVVVSDN-GVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 152 ~----~~l~~~~~dg~i~iwd~~~-----~~~~~~~~------~~~~~~v~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 215 (357)
. .++++|+.||.|+||+--. .+.+..+. .+..+.-.-+.|..+ |+|++++.-..|+|||..
T Consensus 1119 Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~--- 1195 (1387)
T KOG1517|consen 1119 NEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH--- 1195 (1387)
T ss_pred cccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc---
Confidence 7 7899999999999997422 12221110 111111133455543 478888888999999987
Q ss_pred cccccccceeeeeE-eeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecCc-
Q 038568 216 HNKERKSRHMLVTT-LVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVGD- 290 (357)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~- 290 (357)
....... ..+....|+++.-+. .|+.+++|..||.|++||.+....-..+.....|... |..+.+...
T Consensus 1196 -------~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 -------KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred -------cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 2222222 223455677776543 5789999999999999999977655556666778777 888877664
Q ss_pred --eEEEecCCCeEEEeeCCCCcceeeeeeecCCc--C-ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 --LLASGSADRTVRIWQRGKENCYRCMAFLEGHE--K-PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++|+.||.|++||++.. ..........|. + ..+++..++..+ .+|+|+. +.|+||+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~hap-------iiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEHAP-------IIASGSA-QLIKIYS 1331 (1387)
T ss_pred CcceeeeccCCeEEEEecccC-cccccceeeeccccCccceeeeeccCCC-------eeeecCc-ceEEEEe
Confidence 6999999999999999974 223333333443 3 599999999998 9999998 9999996
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=144.02 Aligned_cols=240 Identities=9% Similarity=0.130 Sum_probs=181.6
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.++...+..++++++ |++.|.|++|+ |+.+|+|+.| .|.+|+. .- +-+-.+. |...|.|+.|+|-.
T Consensus 37 iyD~ndG~llqtLKg-----HKDtVycVAys~dGkrFASG~aDK~VI~W~~-kl-EG~LkYS----H~D~IQCMsFNP~~ 105 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKG-----HKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KL-EGILKYS----HNDAIQCMSFNPIT 105 (1081)
T ss_pred EEeCCCccccccccc-----ccceEEEEEEccCCceeccCCCceeEEEecc-cc-cceeeec----cCCeeeEeecCchH
Confidence 345567788889997 99999999999 9999999999 9999987 32 3333444 99999999999965
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|++++. ...-+|..+.....+. .....+.+++|.. .+++.|-.
T Consensus 106 h~LasCsL-sdFglWS~~qK~V~K~--------------------------------kss~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 106 HQLASCSL-SDFGLWSPEQKSVSKH--------------------------------KSSSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred HHhhhcch-hhccccChhhhhHHhh--------------------------------hhheeEEEeeecCCCcEEEEecc
Confidence 888776 4567888765432211 3346788899988 89999999
Q ss_pred CCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC------eEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 161 DRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG------VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+|+|.+-+- +++....+. .+.+.+|.+++|+|.. .+++..-..++.+|.+. ++.+..-+.
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-----------G~~Igk~r~ 220 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-----------GKQIGKDRA 220 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-----------ceeeccccc
Confidence 999999874 444433332 4567899999999853 37788888888888875 333333333
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..-...|+.+.++|.+++.|+.|+.+.+|-.+ +- .+.+......+|..++..|+ +++.|+.||+|.-|++-
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-Gv---rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GV---RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEeec-Ce---EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 44456789999999999999999999999654 32 23344446677887777666 99999999999999863
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=141.15 Aligned_cols=250 Identities=17% Similarity=0.134 Sum_probs=173.2
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccc--cceecc-ccCCCCceEEEEEecCc----eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSH--VDTFSN-DLSSSGSVKSITFHITK----IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~-~~~~~~~v~~l~~~~~~----l~~~~~d~~i~v 96 (357)
-...|+|++|+ .+++|.|..+ +|.+||+ ..+.. ...+.. ...|..+|+.+.|..+. +++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~-~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDL-RKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEc-cCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 46789999999 7888888899 9999999 54433 222211 12489999999998642 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc--
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN-- 171 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~-- 171 (357)
|+++.-.............. . ..-......++++.|.+ ..++.|+.+|.|.--+-..
T Consensus 320 W~~~~l~~P~e~~~~~~~~~-----------------~-~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKH-----------------K-GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred eeccccccchhhcccccccc-----------------c-ccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 98765433211111110000 0 00002335688899988 8899999999988733222
Q ss_pred -ch-----hhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 172 -YK-----CLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 172 -~~-----~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
.. .+..+ ..|.++|.++.++|=+ . +++++ |.++++|.-. ....++..+..+...|++++||
T Consensus 382 ~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---------~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 382 PAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---------VIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred ccccccccccccc-cccCcceEeeecCCCccceeeeec-cceeEecccc---------CCCCcchhhhhccceeeeeEEc
Confidence 11 22233 6788999999999977 3 44444 9999999864 2345666677777889999999
Q ss_pred cC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCC
Q 038568 244 GD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 244 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~ 308 (357)
|- ...++++..||.|.+||+.....- +......+......+.+++ ..|++|...|.+.+|++..
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~-Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEE-PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccC-CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 94 458888889999999999855432 2222222344445566655 4899999999999999964
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=128.00 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=166.5
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCC-eEEEEecCCccc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDC-KIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~-~i~vwd~~~~~~ 104 (357)
|...|+.+.-- ++.|.+-+.| .+.+|++ .....+ .. |.-.++++.|.+..+...+... ..-.++-+....
T Consensus 55 g~~~it~lq~~p~d~l~tqgRd~~L~lw~i-a~s~~i---~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde 127 (323)
T KOG0322|consen 55 GRLFITNLQSIPNDSLDTQGRDPLLILWTI-AYSAFI---SI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE 127 (323)
T ss_pred ccceeeceeecCCcchhhcCCCceEEEEEc-cCcceE---EE---eeeeccccccccceeccCCCcchhheecCCcccch
Confidence 67788888777 7889999999 9999999 543332 22 6667778888876666555433 222222221111
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-----CeEEEEecCCeEEEEEcCcchh-----
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----GLMYSVSWDRSFKIWNASNYKC----- 174 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~----- 174 (357)
..... ..........++.. ....+.+.+..+.. -++++|..+|.+.+||+.++..
T Consensus 128 ~h~~D----~g~~tqv~i~dd~~-----------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~ 192 (323)
T KOG0322|consen 128 THKQD----GGDTTQVQIADDSE-----------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP 192 (323)
T ss_pred hhhhc----cCccceeEccCchh-----------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence 00000 00000000000000 13445666666433 5677888999999999998733
Q ss_pred -----hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 175 -----LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 175 -----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
.... ..|..++.++.+.+.- +=++|+.+..+..|.+.. .....+...+..-..-.|..+..-||++.
T Consensus 193 ~~~kv~~~~-ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~------s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 193 QSSKVESPN-ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH------STGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred cccccccch-hhccCcceeeeechhhcCCcCCCccccceeeeecc------ccCcccccceEEecCCCccceEEccCCcE
Confidence 3333 5688999999998643 457788888899999872 11122222233333456888999999999
Q ss_pred EEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
+++++.|++||||+.++.. ++..+.-|...|.+++|+++ .+|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~---pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLN---PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCC---chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999887 45566679999999999998 9999999999999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=134.81 Aligned_cols=214 Identities=14% Similarity=0.168 Sum_probs=148.9
Q ss_pred eeEEEEe--cceEEEeeCCceEEEeccCCcc----ccceeccccCCCCceEEEEEe-----cCc--eEEeecCCeEEEEe
Q 038568 32 ISCLAVH--NSLLYAASLNEINVFDLISDYS----HVDTFSNDLSSSGSVKSITFH-----ITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~l~~~-----~~~--l~~~~~d~~i~vwd 98 (357)
+....++ |++|+-.-.+.+++|+. ..+. ++....- ......|=+|+ |.+ ++.+-.-|.+.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~-~g~~~~~~pi~k~~y---~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSY-RGAADLSKPIDKREY---KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEc-cCcchhccchhhhcc---cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 4445555 77777766567888887 4321 1111111 22233344453 233 88888889999998
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcc---
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNY--- 172 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~--- 172 (357)
....+..+.+.... .-....|+++.|-| ..++.+-.+|.+.+||....
T Consensus 202 p~~~~~sklfne~r--------------------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 202 PINFEVSKLFNEER--------------------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred chhhHHHHhhhhcc--------------------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC
Confidence 76532222121110 02247899999999 78888888999999975310
Q ss_pred -------------------------hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 173 -------------------------KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 173 -------------------------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
.++..+ ......|+..+|+||| +|++.+.||.+||||.. ..++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd----------t~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD----------TQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc----------HHHH
Confidence 011111 1234578899999999 59999999999999997 3445
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+..++.--+...|++|+|||++|++|++|..|.||.+...+ .+..-.+|+.+|..++|+|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence 55555566789999999999999999999999999998776 5667789999999999998
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=136.47 Aligned_cols=301 Identities=17% Similarity=0.265 Sum_probs=204.6
Q ss_pred EEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-----eEEeecCCeEEEEecCCccceee
Q 038568 35 LAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-----IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 35 ~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
-.|+ +++++....+.|.||.. .+++++..+.+ |..+++.+.+.|.. +++++.||.|++||...+..++.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~-~Tg~~i~~l~~---~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYST-ATGECITSLED---HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEec-chHhhhhhccc---ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3466 77777777779999999 99999999998 99999999998753 77999999999999998876655
Q ss_pred eeecCccccce----------eeeecCCCeEEEec-------------------ccccccccccccEEEEEEec-CeEEE
Q 038568 108 VSTLPTVKDRL----------IRSVLPNNYVTVRR-------------------HKKRLWLEHWDAVSDLVVKQ-GLMYS 157 (357)
Q Consensus 108 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~-~~l~~ 157 (357)
+...-...... ....+.+.+..+.. ....+...|.. -.++.+++ ..+..
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 44321111100 11111111111110 00111122222 34566666 55555
Q ss_pred EecCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 158 VSWDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
...+..+.+|+..++.. .......|...+++.+++|++ +++++..||.|.+|.-- ...........+.=|
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~------~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF------GSSDDSETCTLLHWH 250 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc------ccccccccceEEEec
Confidence 55667899999877441 111124566678999999999 59999999999999743 101122233445568
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~ 311 (357)
...|++++|+++|.+|++|+..+.+.+|.+.++++. .+ ..-.++|..+.++++ +.+....|+.|.+-...+.+.
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCcc-cc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 899999999999999999999999999999988732 22 334677888888776 778888899999998755322
Q ss_pred eeeeeeec--------CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 YRCMAFLE--------GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...+.-+. ...+-.+.++++|..+ .++-.+..|.|.+||
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-------~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-------SLVLNGHPGHVQFYD 373 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCC-------ceeecCCCceEEEEe
Confidence 12222221 1245577888999665 788888889998886
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=125.28 Aligned_cols=229 Identities=18% Similarity=0.165 Sum_probs=173.7
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..++|+|.+|++++ ++.+.....|.||.....+......++. .|...|+.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls---------------------------~Hd~~vtgv 61 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS---------------------------EHDKIVTGV 61 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh---------------------------hhCcceeEE
Confidence 56799999999997 8888888999999998887666665554 899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcC-c--chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNAS-N--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+|.| +.|++++.|..-++|... . .++...+ ..++...+++.|+|.+ +|++|+....|.+|-++ ..+.
T Consensus 62 dWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E------~ENd 134 (361)
T KOG1523|consen 62 DWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYE------QEND 134 (361)
T ss_pred eecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEe------cccc
Confidence 9999 899999999999999983 2 2344444 6788999999999988 79999999999999886 2222
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc-----CC-------cee---eeeeccCCccceEEEee
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER-----DH-------RMV---FAEALWGHTGALLCLIN 287 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~-------~~~---~~~~~~~~~~~v~~~~~ 287 (357)
-......-+.+++.|++++|+|++-+|++|+.|+..|||..-- .. .+. +........+.+..+.|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 2222333456778899999999999999999999999997531 10 000 01122234567888888
Q ss_pred c--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 V--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+ ++.|+-.+.|+.+.+-|...+. +.+.......-|..++.|..+..
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~--~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS--ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc--hhccchhhccCCceeeEeecCCc
Confidence 7 5599999999999999988763 22333333347788888876653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=135.67 Aligned_cols=222 Identities=20% Similarity=0.248 Sum_probs=157.7
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...|.++.|..+. ++..+.|..+.+|.--+.+....+...+..- ++. .|..+-..-.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-------pt~--------------~h~~~rs~~~ 71 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-------PTD--------------MHLGGRSSGG 71 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccC-------Ccc--------------ccccccccCC
Confidence 77888899999876 7777777777666543333222222111000 000 1100000000
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
=.. +.++.++.||.+.+.+ +.++....+ .+|.+.+.+-.|+|+|. |++++.||.|++|.-. +...
T Consensus 72 g~~~d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-----------GMLR 138 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-----------GMLR 138 (737)
T ss_pred CCCcceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-----------chHH
Confidence 000 6788999999999987 467777777 89999999999999995 9999999999999854 2333
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
..+.....+|+|++|.|+.+.++-+ ..+.+.|=.+.... ..-....|.+-|++++|++. .+++|++|-..++||
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD 214 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccccc---ceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence 3444567789999999988766554 34557776665444 23356689999999999976 999999999999999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
... +.+..-..|..+|++++|.|+.
T Consensus 215 ~~G----~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 215 AQG----ANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred ccC----cccccCChhccceeeeeecccc
Confidence 874 6677788899999999999994
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=135.99 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=132.5
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
+.+.+.+ |.+-|+++.|+.++ |++|+.|-.+.|||....+....+.+
T Consensus 42 lE~eL~G---H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T---------------------------- 90 (758)
T KOG1310|consen 42 LEAELTG---HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST---------------------------- 90 (758)
T ss_pred hhhhhcc---ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec----------------------------
Confidence 3456777 99999999999998 99999999999999997777766665
Q ss_pred ccccccEEEEEEec----CeEEEEecCCeEEEEEcCc----------chhhhhccccccccEEEEEEecCC--eEEEEeC
Q 038568 139 LEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN----------YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSA 202 (357)
Q Consensus 139 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~ 202 (357)
+|...|.++.|-| ..+++|+.|..|+++|+.. .+....+ ..|...|..++..|++ .+.+++.
T Consensus 91 -gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasE 168 (758)
T KOG1310|consen 91 -GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASE 168 (758)
T ss_pred -ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecC
Confidence 9999999999999 7899999999999999984 2233444 6788889999999988 5999999
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecc
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 264 (357)
||+++-+|++.....+....-...+..+...--...++..+| +..+|++|+.|-..++||.+
T Consensus 169 DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 169 DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 999999999832211111101111112222224567899999 55699999999999999954
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=128.70 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=138.7
Q ss_pred eEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 33 SCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.+++|+ |..|++|+.| ++|||++ .+...+..... |.+.|.+|.|+||+ |++.+.| ..+||+.+++-.+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~-Ps~~t~l~e~~---~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW-PSMLTILEEIA---HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec-CcchhhhhhHh---hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 678888 8999999999 9999998 77777777776 99999999999998 8888998 999999999854433
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-C-----eEE-EEecCCeEEEEEcCcchh-----h
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-G-----LMY-SVSWDRSFKIWNASNYKC-----L 175 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----~l~-~~~~dg~i~iwd~~~~~~-----~ 175 (357)
.... ........+.|.. + +++ ....-+.|+.||+..... .
T Consensus 223 ~t~~----------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 223 KTPF----------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred cCCc----------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 3321 1122333344433 2 222 223345566665543221 2
Q ss_pred hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec
Q 038568 176 ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
.+. ......|++++++++| .++.|+.||.|.+++... .......-+.|...|+.+.|+|+.+++++.+.
T Consensus 275 ~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~---------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 275 RKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS---------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred hhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEece---------eeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 222 2334579999999999 588999999999999861 12233344578999999999999999999999
Q ss_pred CCeEEEEeccc
Q 038568 255 DRWIVVWERER 265 (357)
Q Consensus 255 dg~i~vwd~~~ 265 (357)
|.++.|..+.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 99999988764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-15 Score=111.33 Aligned_cols=235 Identities=12% Similarity=0.177 Sum_probs=158.9
Q ss_pred ceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecC------CeEEEEecCC
Q 038568 31 IISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQD------CKIRVWKITA 101 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d------~~i~vwd~~~ 101 (357)
....++|+ ..-+++|..+-.+||+. +..+....-+... ..-.+..|-|-.+. .+.|+.+ ..+.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~-~P~ke~~~r~~~~-~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNC-DPFKESASRQFID-GGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEec-Cchhhhhhhcccc-CchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45558888 55566665559999999 6644333222200 12344455566666 2333332 5699999443
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcC-cchhhhhccc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNAS-NYKCLESVNK 180 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 180 (357)
.+.+..+ ....+|.++.+.++.+++.- .+.|.+|... +.+.+..+..
T Consensus 85 ~~~i~el-------------------------------~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 85 ERCIIEL-------------------------------SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred CcEEEEE-------------------------------EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 3322222 45689999999997777776 4689999987 5555555521
Q ss_pred -cccccEEEEEEecCC-eEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 181 -AHEDAVNAVVVSDNG-VVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 181 -~~~~~v~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.......+++-..+. .|+. |-.-|.|++-|+.. .. ......+.+|.+.|.|++.+.+|..+|+++..|+
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~------~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT 204 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS------TK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGT 204 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh------cC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence 223334444333333 2433 45579999999972 11 1134667899999999999999999999999997
Q ss_pred -EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 -IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 -i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
|||||..+++.+..++.-. ....+.+++|+++ +|+++++.|++.|+.++.
T Consensus 205 LIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 8999999999766654422 3467899999998 999999999999999875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-15 Score=121.80 Aligned_cols=249 Identities=12% Similarity=0.153 Sum_probs=149.7
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc--eE
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
++++.+. +.+....++++ +++|++++. + .|.+|++.+++.. +.... ..+....++|+|++ ++
T Consensus 26 ~~~~~~~------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~----~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 26 TLLQVVD------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP----LPGSPTHISTDHQGRFLF 95 (330)
T ss_pred eeeeEEe------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec----CCCCceEEEECCCCCEEE
Confidence 4556665 44567788888 888877764 5 9999999323322 22222 33456789999987 55
Q ss_pred Eee-cCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecC
Q 038568 87 TAH-QDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWD 161 (357)
Q Consensus 87 ~~~-~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~d 161 (357)
+++ .++.|.+|++++.... ...... .+......++++| ++++ +...+
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQII----------------------------EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeec----------------------------cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 554 4899999999743211 111111 1123355677888 5664 45567
Q ss_pred CeEEEEEcCcchhhhh-----ccccccccEEEEEEecCCe-EEEEeC-CCeEEEEEccccccccccccceeeeeEeec--
Q 038568 162 RSFKIWNASNYKCLES-----VNKAHEDAVNAVVVSDNGV-VYTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVK-- 232 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 232 (357)
+.|.+||+++...+.. ...........+.|+|++. ++++.. ++.|.+|++.. .....+....+..
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~------~~~~~~~~~~~~~~p 221 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD------PHGEIECVQTLDMMP 221 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC------CCCCEEEEEEEecCC
Confidence 9999999976432221 1112234567899999984 555554 89999999862 1111122222221
Q ss_pred ----cccceeEEEEecCCCEEEEEec-CCeEEEEecccCC-ceeeeeeccCCccceEEEeec--CceEEEec-CCCeEEE
Q 038568 233 ----HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDH-RMVFAEALWGHTGALLCLINV--GDLLASGS-ADRTVRI 303 (357)
Q Consensus 233 ----~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~v 303 (357)
+......+.++|++++++++.. ++.|.+|++.... ........... .....+.++ +++|+++. .+++|.+
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 1122346889999999998854 7899999996543 22222221111 122344554 55666655 4899999
Q ss_pred eeCCC
Q 038568 304 WQRGK 308 (357)
Q Consensus 304 w~~~~ 308 (357)
|+++.
T Consensus 301 ~~~~~ 305 (330)
T PRK11028 301 YEIDG 305 (330)
T ss_pred EEEcC
Confidence 98853
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=119.25 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.....++.++| |.+.|++...- ..-+++.+.| +++||--.+.++.-..+.. ....+++++.+.++. |+
T Consensus 12 ~kp~ll~~~eG-----~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 12 KKPELLSKIEG-----SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred cchhhhhhhcC-----chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEE
Confidence 34455666675 99999987666 7889999999 9999976466666555542 146788999999875 88
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
.+-..|++.-+.+...=. .... .+.+..|...+..+.|+. ..+++.+.|..+
T Consensus 85 vg~~ngtvtefs~sedfn--km~~------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFN--KMTF------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF 138 (404)
T ss_pred EEEecceEEEEEhhhhhh--hcch------------------------hhhhhhhhcceeeEEecCCceeEEEeccccce
Confidence 888899988887653211 1110 033348999999999988 889999999877
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
.---.+.+..+..+. .....+++.+.-. .-..|...|.|..-.+. .....++..+.+|...+.+++|.|
T Consensus 139 ~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~--------~~~~~~i~~~~~h~~~~~~l~Wd~ 207 (404)
T KOG1409|consen 139 AWHCTESGNRLGGYN--FETPASALQFDAL-YAFVGDHSGQITMLKLE--------QNGCQLITTFNGHTGEVTCLKWDP 207 (404)
T ss_pred EEEeeccCCcccceE--eeccCCCCceeeE-EEEecccccceEEEEEe--------ecCCceEEEEcCcccceEEEEEcC
Confidence 655556665555441 1111112222111 45566677777666554 224567888999999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
..+.|++|..|..+.+||+--.+. ....+.+|...|..+.+.+- .+.+++.||.|.+|+.+.
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcEEEeccccCceEEEeccCCcc--eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999975443 44567789998988877664 899999999999999753
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=128.02 Aligned_cols=195 Identities=19% Similarity=0.284 Sum_probs=146.4
Q ss_pred EEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 76 KSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 76 ~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
..++|++++ +++++.||++|||++.+....... ..|...|.++.|+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e------------------------------~~~~~eV~DL~FS~d 197 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE------------------------------IAHHAEVKDLDFSPD 197 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh------------------------------HhhcCccccceeCCC
Confidence 678899885 999999999999997655432221 27889999999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-----eEEEE-eCCCeEEEEEccccccccccccce
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-----VVYTG-SADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-----~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+.|++.+.| ..+||+.+++.++.... .........+.|+.++ ++++. ..-+.|+.||+...... ..
T Consensus 198 gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-----~~ 271 (398)
T KOG0771|consen 198 GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-----NF 271 (398)
T ss_pred CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-----cc
Confidence 799999999 89999999998887763 2334456677787666 34433 34567888877521110 01
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVR 302 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~ 302 (357)
-...........|++++.+++|++++.|+.||.|.|++..+.+..... ...|...|+.+.|+|+ ++++.+.|....
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 111222223457999999999999999999999999999987765443 4579999999999998 888899999888
Q ss_pred EeeCCC
Q 038568 303 IWQRGK 308 (357)
Q Consensus 303 vw~~~~ 308 (357)
|..+.-
T Consensus 350 v~~l~v 355 (398)
T KOG0771|consen 350 VTKLAV 355 (398)
T ss_pred EEEEee
Confidence 887754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=122.77 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=187.7
Q ss_pred CccceeEEEEe----cceEEEeeCC-ceEEEeccCCcccccee---ccccCCCCceEEEEEecCceEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTF---SNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~ 99 (357)
-...|+.++|. .+.|...+.| .+..+.+ ........+ .......++|..++.....|++|-.+|.+.+|..
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~-~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVI-EEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccc-cCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 45678888887 4456666567 7877777 544433332 1111167788888888888999999999999998
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecC--CeEEEEEcCcchh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWD--RSFKIWNASNYKC 174 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d--g~i~iwd~~~~~~ 174 (357)
..+....... +...-...+..+.-.+ ..+++|+.. ..+.+||+++.+.
T Consensus 133 k~~d~hss~l---------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 133 KSGDLHSSKL---------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred cCCccccccc---------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence 8554210000 0001113344444444 677789988 8899999998765
Q ss_pred hhhccc--------cccccEEEEEEecC--C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 175 LESVNK--------AHEDAVNAVVVSDN--G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 175 ~~~~~~--------~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
+.+-.. .-.-.++++.|.+. . .|+++..-+.+++||.+ ....++..+.-...+++++...
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~---------~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR---------HQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc---------ccCcceeEeccccCcceeeeec
Confidence 544321 12234677888776 3 69999999999999988 3456777777778999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
|+++++++|..-|.+..||++.+... ...+.+..+.+.++..+|. +++++|-|..|||+|+.+.+ ++...- -
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---ll~kvY-v 330 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---LLHKVY-V 330 (412)
T ss_pred CCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---hhhhhh-h
Confidence 99999999999999999999987742 2346788899999999888 99999999999999999853 222211 2
Q ss_pred cCceEEEEEeeCC
Q 038568 322 EKPVKSLVAISSS 334 (357)
Q Consensus 322 ~~~v~~~~~~~~~ 334 (357)
...+++|.+.++-
T Consensus 331 Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 KSRLTFILLRDDV 343 (412)
T ss_pred hccccEEEecCCc
Confidence 3456777775543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=136.16 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=146.4
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEE---EecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV---VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
..++.++.+..+.+||...+.....++........++. .+++. ++++|+.-+.|.+|+.. . ...+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~------~---dn~p~- 169 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH------E---DNKPI- 169 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc------c---cCCcc-
Confidence 78888999999999999888777766222222222222 23444 59999999999999986 1 11222
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~ 308 (357)
.+.+|.+.+.++.++.||+++++.++|.++|+|++.+.+... ....+|...+..+.+.++.+++++.|.+.++|+.+-
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccceeEEeccceEEEEEeccc
Confidence 678999999999999999999999999999999999887543 466789999999999999999999999999997764
Q ss_pred CcceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 309 ENCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+..+.+|. ..|..++..++.. .++|++.||.+++||
T Consensus 248 ----~~l~~y~~h~g~~iw~~~~~~~~~-------~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 248 ----TQLEVYDEHSGKGIWKIAVPIGVI-------IKVTGGNDSTLKLWD 286 (967)
T ss_pred ----ceehhhhhhhhcceeEEEEcCCce-------EEEeeccCcchhhhh
Confidence 3344677775 4699999999887 999999999999996
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=135.42 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=162.2
Q ss_pred EeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeE
Q 038568 53 FDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYV 128 (357)
Q Consensus 53 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 128 (357)
|+. .|..+..+.. |...|..++.++.. +++|+.||+|++|+...-... ...+.
T Consensus 1034 W~p--~G~lVAhL~E---hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS------------------ 1090 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHE---HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS------------------ 1090 (1431)
T ss_pred CCc--cceEeehhhh---ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee------------------
Confidence 554 4577778877 99999999988643 999999999999998753221 00000
Q ss_pred EEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-------hhhhccccccccEEEEE-Eec--CC-
Q 038568 129 TVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-------CLESVNKAHEDAVNAVV-VSD--NG- 195 (357)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~-~~~--~~- 195 (357)
..++......+.++.+.+ +.+|.++.||.|++.++...+ +.........+.+.++. +.. ..
T Consensus 1091 ------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1091 ------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred ------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence 011112456777777777 899999999999999987521 11111112233344433 222 22
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 275 (357)
.++.+..-+.|..||++. ...-.. .......+.|++++.+|.+.++++|+..|.+.+||++=...+... .
T Consensus 1165 ~lvy~T~~~~iv~~D~r~------~~~~w~--lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw--~ 1234 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRM------RHDAWR--LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW--E 1234 (1431)
T ss_pred eEEEEEeccceEEecchh------hhhHHh--hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc--c
Confidence 478888899999999982 211111 122334578999999999999999999999999999965532211 1
Q ss_pred cCCccceEEEeec---C--ce-EEEec-CCCeEEEeeCCCCcceeeeeeec----------------CCcCceEEEEEee
Q 038568 276 WGHTGALLCLINV---G--DL-LASGS-ADRTVRIWQRGKENCYRCMAFLE----------------GHEKPVKSLVAIS 332 (357)
Q Consensus 276 ~~~~~~v~~~~~~---~--~~-l~~~~-~dg~i~vw~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~ 332 (357)
.++..++..+..+ + .. +.+++ ..+.|.+|++.++.....+..-. .+.-+.....+..
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 2344566555443 3 23 44444 57899999999874322222110 0001111112222
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
-+ .++.+|+.|+.||.||
T Consensus 1315 ~~-------~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1315 KN-------GFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CC-------ceeeecCCccceeecc
Confidence 22 2899999999999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-16 Score=121.83 Aligned_cols=246 Identities=13% Similarity=0.188 Sum_probs=169.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|.+.|++|.|+.++ |++|+.|..+++|+++..-..+..+.+.- .-..|.+.|.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-----------------------~~~~H~SNIF~L 111 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-----------------------MEHPHRSNIFSL 111 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-----------------------ccCccccceEEE
Confidence 99999999999876 99999999999999864321111111100 001677899999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+|.. ..+++|..+++|...|+++.+.+..+. ....+.|..+..+|-. .|++.+.++.|.+||.+ ......
T Consensus 112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R------d~~~~~ 185 (609)
T KOG4227|consen 112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR------DRQNPI 185 (609)
T ss_pred EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc------CCCCCC
Confidence 9998 889999999999999999998888772 1223489999999955 79999999999999998 322222
Q ss_pred eeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeee-eccCCcc---ceEEEeecC--ceEEEecC
Q 038568 225 MLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAE-ALWGHTG---ALLCLINVG--DLLASGSA 297 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~---~v~~~~~~~--~~l~~~~~ 297 (357)
.++.. .........+.|+| ...+|++.+..+-+-+||.+......... .+.+-.. .-+...|++ +.|.+--.
T Consensus 186 ~~~~~-AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 186 SLVLP-ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred ceeee-cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 33222 22345567889999 45688888888889999998665432111 1111111 113444544 46666666
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCc-------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHE-------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...-.+||+-+...+ +..+ .|+ ..+.+++|..+. -++||+++-.|++|.
T Consensus 265 ~~~P~~~D~~S~R~~--V~k~-D~N~~GY~N~~T~KS~~F~~D~--------~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCF--VLKS-DHNPNGYCNIKTIKSMTFIDDY--------TVATGSDHWGIHIWK 320 (609)
T ss_pred cCCCEEeeeecccce--eEec-cCCCCcceeeeeeeeeeeecce--------eeeccCcccceEEEe
Confidence 666677888764221 2222 222 357788888775 599999999999993
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-16 Score=120.04 Aligned_cols=249 Identities=11% Similarity=0.126 Sum_probs=170.5
Q ss_pred CCCceEEEEEecCc----eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK----IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
....|..++|..++ |...+.|..+..+.+............. .......+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~------------------------~~~l~~~~I~ 109 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK------------------------TVSLGTKSIK 109 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc------------------------cccccccccc
Confidence 55678888888654 4444467777777766554333321111 1114567788
Q ss_pred EEEEecCeEEEEecCCeEEEEEcCcch----hhhhccccccccEEEEEEecCC--eEEEEeCC--CeEEEEEcccccccc
Q 038568 147 DLVVKQGLMYSVSWDRSFKIWNASNYK----CLESVNKAHEDAVNAVVVSDNG--VVYTGSAD--GRIRVWERSVVDHNK 218 (357)
Q Consensus 147 ~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d--~~i~i~d~~~~~~~~ 218 (357)
.++.....|++|-.+|.+.+|..+.+. .+..+ .....+..+.-.+.. .+++|+.. ..+.+||+.......
T Consensus 110 gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 110 GLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred chhhcCCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 888888899999999999999987433 22222 334556666666654 46779988 899999998321111
Q ss_pred ccccceeeeeEeeccccceeEEEEecC--CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE--EeecCceEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGD--GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~ 294 (357)
+.+....-...+. -.-.++++.|-+. ...|++++.-+++++||.+.++++.....+. ..++++ +.++++++++
T Consensus 188 ~aKNvpnD~L~Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 188 SAKNVPNDRLGLR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYT 264 (412)
T ss_pred eccCCCCccccce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEE
Confidence 1110000000000 1234578888886 7899999999999999999877654444443 445544 4556669999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|..-|.+..||.+.++ .....+++-.+.|++|..+|..+ +|+++|-|..|||+|
T Consensus 265 gn~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp~~~-------~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHPTHP-------VLASCGLDRYVRIHD 318 (412)
T ss_pred ecccchhheecccCce--eeccccCCccCCcceEEEcCCCc-------eEEeeccceeEEEee
Confidence 9999999999999973 22334888999999999999998 999999999999987
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=125.38 Aligned_cols=162 Identities=25% Similarity=0.414 Sum_probs=135.2
Q ss_pred ccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
...++.++.|.++. ++++|+.|..|++|.+........ ....+....+..|...|+++.|+|+|..|++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 35678888888876 699999999999999874433221 134566778889999999999999999999999999999
Q ss_pred EEecc--------c-----CCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 260 VWERE--------R-----DHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 260 vwd~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+|... + .+.....+.+.+|...+..++|.++ ++++++.|+.+++||+..+ +.+..+..|..-
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~y 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHY 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeeccccccc
Confidence 99876 2 2234455677789999999999887 9999999999999999998 778889999999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
|..++|.|-++ ++++-+.|...+
T Consensus 168 vqgvawDpl~q-------yv~s~s~dr~~~ 190 (434)
T KOG1009|consen 168 VQGVAWDPLNQ-------YVASKSSDRHPE 190 (434)
T ss_pred cceeecchhhh-------hhhhhccCcccc
Confidence 99999999998 898888887444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=130.78 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=149.9
Q ss_pred CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceee
Q 038568 47 LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 47 ~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.+ .|.+||. +... .+.+.. +...+.+.+|+|++ |+.++.+ ..|.+||+.+++.. .+...+
T Consensus 182 ~~~~i~i~d~-dg~~-~~~lt~---~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~-------- 247 (429)
T PRK01742 182 QPYEVRVADY-DGFN-QFIVNR---SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFR-------- 247 (429)
T ss_pred ceEEEEEECC-CCCC-ceEecc---CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCC--------
Confidence 36 9999998 5544 455665 78899999999997 6666543 46999999876532 222111
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEE-ecCCeEEEE--EcCcchhhhhccccccccEEEEEEecCC
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV-SWDRSFKIW--NASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
++ ....+|+| +.|+.+ +.+|.+.|| |+.+++. ..+ ..+...+....|+|+|
T Consensus 248 -------------------g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l-t~~~~~~~~~~wSpDG 303 (429)
T PRK01742 248 -------------------GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL-TSGAGNNTEPSWSPDG 303 (429)
T ss_pred -------------------Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-ccCCCCcCCEEECCCC
Confidence 22 33578999 566665 467866555 6655543 344 3455667889999999
Q ss_pred e-EE-EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 196 V-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 196 ~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
. |+ ++..++...+|++.. ..... ..+ .+.. ....|+|+|++|+..+.++ +.+||+.++.......
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~------~~~~~---~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSA------SGGGA---SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CEEEEEECCCCCceEEEEEC------CCCCe---EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 4 44 444678889998762 11111 111 2332 4578999999998887765 6669998776432211
Q ss_pred eccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 274 ALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
. ....-..++.++++|+.++.++.+.+|++.+.. ......+..|.+.+...+|+|-.
T Consensus 371 ~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 371 T---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred C---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCCCC
Confidence 1 111222334444588888889988888764210 14566677888889999999853
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-15 Score=122.07 Aligned_cols=280 Identities=14% Similarity=0.184 Sum_probs=185.1
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
-++++.|. |...-+.|..+ |+|+. ||... .|++||+ ..... .|.... ....|.-.-.+.|. ++.
T Consensus 42 ieLiQdfe------~p~ast~ik~s~DGqY~lAtG~YKP~ikvydl-anLSL--KFERhl-Dae~V~feiLsDD~SK~v~ 111 (703)
T KOG2321|consen 42 IELIQDFE------MPTASTRIKVSPDGQYLLATGTYKPQIKVYDL-ANLSL--KFERHL-DAEVVDFEILSDDYSKSVF 111 (703)
T ss_pred HHHHHhcC------CccccceeEecCCCcEEEEecccCCceEEEEc-cccee--eeeecc-cccceeEEEeccchhhheE
Confidence 34566676 88889999998 77655 55577 9999999 54322 233200 23344445555554 666
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
-..|.+|.+-.--..- ..+. -...-.+++++. .-|+.++....|+
T Consensus 112 L~~DR~IefHak~G~h--y~~R-------------------------------IP~~GRDm~y~~~scDly~~gsg~evY 158 (703)
T KOG2321|consen 112 LQNDRTIEFHAKYGRH--YRTR-------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVY 158 (703)
T ss_pred eecCceeeehhhcCee--eeee-------------------------------cCcCCccccccCCCccEEEeecCcceE
Confidence 6778877665432111 1110 012234455555 3344445556788
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-----cceeE
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-----STVNA 239 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~ 239 (357)
-++++.|+-+..+ ......++++..++.. +|++|+.+|.|-.||.+.-... ...........|. ..|++
T Consensus 159 RlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 159 RLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV----GTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred EEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhh----eeeecccccCCCccccccCcceE
Confidence 8999999999998 6667899999999865 7888888999999999821110 0111111112222 34999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcceeee
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
+.|+.+|-.+++|+.+|.+.|||+++.+++.. .-.+...+|..+.|.+. .+++ .....++|||-.+++..
T Consensus 234 l~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~--- 307 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--KDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPM--- 307 (703)
T ss_pred EEecCCceeEEeeccCCcEEEEEcccCCceee--cccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCce---
Confidence 99999999999999999999999998876422 22344567788888543 4444 44678999999998543
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+.. ...++.+++.|++. +++++-.++.+..
T Consensus 308 asiEp-t~~lND~C~~p~sG-------m~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 308 ASIEP-TSDLNDFCFVPGSG-------MFFTANESSKMHT 339 (703)
T ss_pred eeccc-cCCcCceeeecCCc-------eEEEecCCCccee
Confidence 43333 34599999999987 8888887776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-14 Score=110.99 Aligned_cols=286 Identities=13% Similarity=0.134 Sum_probs=171.3
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCcc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~ 103 (357)
..+..++|+ -.-+|++..| .|++|+- .. .....++. .....|+|++|-|.. |+.|+. +-|.+|..+...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~k-ss-t~pt~Lks--~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDK-SS-TCPTKLKS--VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEecc-CC-CCCceecc--hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 456677888 4457788888 9999998 54 55555553 256789999999975 888887 568999876432
Q ss_pred ceeee-eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcchhhhhcc
Q 038568 104 QHQLV-STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 179 (357)
..... .........+ ....+| .+|++++|++ ..+++++. |..|.|||..++..+.-.
T Consensus 174 n~~r~~~~~s~~~~qv-----------------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~- 234 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQV-----------------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI- 234 (445)
T ss_pred ccccccccccccchhh-----------------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-
Confidence 22111 1000000000 000144 7899999999 66777665 578999999998876655
Q ss_pred ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
....+.+.-+.|+||+ +|+++..|+..++|+.. ......... ...+.|....|+|+|++|+..+. |.-
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~---------q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN---------QSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhc---------ccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 4566778899999999 69999999999999654 122222222 23458999999999997665543 334
Q ss_pred EEEecccCCc------------eeeeeec------cC---CccceEEEeecCc--eEEEecCCC--------eEEEeeCC
Q 038568 259 VVWERERDHR------------MVFAEAL------WG---HTGALLCLINVGD--LLASGSADR--------TVRIWQRG 307 (357)
Q Consensus 259 ~vwd~~~~~~------------~~~~~~~------~~---~~~~v~~~~~~~~--~l~~~~~dg--------~i~vw~~~ 307 (357)
++|.+.-..+ ...+..+ .+ ..+..-+++|+|. +||+.-..+ .|.+||.+
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 4554432111 1111111 01 1345566777654 888765543 47778887
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..........-......-..++|+|-.+ ...+|..+=.-|.+.
T Consensus 384 ~sp~vels~cg~i~ge~P~~IsF~pl~n----~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 384 KSPPVELSYCGMIGGEYPAYISFGPLKN----EGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccCceEEEecccccCCCCceEEeeeccc----CCcEEEEEeccCceE
Confidence 6433332211111122244566665432 112444444445544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-15 Score=113.36 Aligned_cols=262 Identities=11% Similarity=0.145 Sum_probs=176.1
Q ss_pred EEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeee
Q 038568 36 AVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 36 ~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
+|| |+++|+++.-.+.|-|. ++.+..+.|. --..|.-+.|..+. |.....|+.|.+|++...+....+.
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~-~tlq~~qlf~----cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId- 88 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDS-ETLQLHQLFL----CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID- 88 (447)
T ss_pred eECCCCCeeeeeeeeEEEEecc-chhhHHHHHH----HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence 455 99999997668888898 8877777766 45678889999876 7777889999999999887766665
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.....+.+++|+| ..|.+...+-.|.+|.+.+.+....- -.+..+.
T Consensus 89 -----------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~k 137 (447)
T KOG4497|consen 89 -----------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVK 137 (447)
T ss_pred -----------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCce
Confidence 4457899999999 56777888999999999876654332 3344557
Q ss_pred EEEEecCCeEEEEeC--C-----------------------------------CeEEEEEccccccccccccceeeeeEe
Q 038568 188 AVVVSDNGVVYTGSA--D-----------------------------------GRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~--d-----------------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
.++|+|+|++++-.. | ..+.+||-- .+...-.
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~-----------Leykv~a 206 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV-----------LEYKVYA 206 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch-----------hhheeee
Confidence 788888886433221 1 122333321 0000001
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCce-----------------------------------------
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM----------------------------------------- 269 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------- 269 (357)
....-.+..++|+|.+++|++|+.|+.+||.+--+-+..
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 122356888999999999999999999988653211000
Q ss_pred ----------------eeeee------ccCCccceEEEeecCc--eEEEecC--CCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 270 ----------------VFAEA------LWGHTGALLCLINVGD--LLASGSA--DRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 270 ----------------~~~~~------~~~~~~~v~~~~~~~~--~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
..+.. .......+--++|+++ ++++-.+ -+.+.+||+++.+ +...-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 00000 0111223455677777 5555543 3689999999752 333334567
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|....|+|..+ .|+.+.....+.+|
T Consensus 363 piraf~WdP~~p-------rL~vctg~srLY~W 388 (447)
T KOG4497|consen 363 PIRAFEWDPGRP-------RLVVCTGKSRLYFW 388 (447)
T ss_pred ceeEEEeCCCCc-------eEEEEcCCceEEEE
Confidence 999999999988 77766666678877
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-17 Score=128.65 Aligned_cols=224 Identities=12% Similarity=0.218 Sum_probs=176.2
Q ss_pred CceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
-.-..+.|+.++ |+.|+..|.+..+|+.+.+....+.. ...|.++.|
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-------------------------------~Etv~Dv~~ 178 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-------------------------------METVRDVTF 178 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-------------------------------hhhhhhhhh
Confidence 345678888877 99999999999999999877665543 356888888
Q ss_pred ec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 151 KQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 151 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.. ..+++......+.|||- .|..+..+ .....|..+.|.|.- .|++++..|.++--|+. .++.+.
T Consensus 179 LHneq~~AVAQK~y~yvYD~-~GtElHCl--k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS----------~GklVa 245 (545)
T KOG1272|consen 179 LHNEQFFAVAQKKYVYVYDN-NGTELHCL--KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVS----------TGKLVA 245 (545)
T ss_pred hcchHHHHhhhhceEEEecC-CCcEEeeh--hhcCchhhhcccchhheeeecccCCceEEEeec----------hhhhhH
Confidence 87 55556666789999994 56666666 344678899999988 48888999999999998 566777
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
.+....+.+..+.-+|-...+-+|..+|+|.+|.....+. +..+..|.++|.+++++++ |++|.+.|..++|||+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch---HHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 7777788899999999888999999999999999988774 4456679999999998766 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++-. .+.+... ..+...+++|..+ +||.+ ....|.+|
T Consensus 323 R~~~---ql~t~~t-p~~a~~ls~Sqkg--------lLA~~-~G~~v~iw 359 (545)
T KOG1272|consen 323 RNFY---QLHTYRT-PHPASNLSLSQKG--------LLALS-YGDHVQIW 359 (545)
T ss_pred cccc---ccceeec-CCCcccccccccc--------ceeee-cCCeeeee
Confidence 9853 2333322 3467788888876 45444 44467777
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-14 Score=106.17 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=131.0
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecC-CccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT-ASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|.|||= ....++.++. ...+|.++.+.++.|++.-. +.|.||.+. ..+....+.+....
T Consensus 76 kviIWDD-~k~~~i~el~----f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NP------------- 136 (346)
T KOG2111|consen 76 KVIIWDD-LKERCIIELS----FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNP------------- 136 (346)
T ss_pred eEEEEec-ccCcEEEEEE----eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCC-------------
Confidence 6999996 6777888887 78999999999999887765 789999987 55555555543211
Q ss_pred EEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEe
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGS 201 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 201 (357)
....+++-.. .+|+ -|-.-|.|+|-|+...+. -..+ .+|...|.|++.+.+| ++++++
T Consensus 137 ---------------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 137 ---------------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred ---------------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCCccEEEEec
Confidence 1122222222 2222 344568999999986555 2444 8999999999999999 699999
Q ss_pred CCCe-EEEEEccccccccccccceeeeeEeec--cccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 202 ADGR-IRVWERSVVDHNKERKSRHMLVTTLVK--HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 202 ~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
..|+ |||||.. .+..+.+++. ....|++|+|+|++.+|++++.-|+++||.++...
T Consensus 201 tkGTLIRIFdt~----------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 201 TKGTLIRIFDTE----------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cCcEEEEEEEcC----------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9987 7999987 4455555553 24679999999999999999999999999997543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=111.85 Aligned_cols=278 Identities=14% Similarity=0.221 Sum_probs=168.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc----ccceecccc---------CCCCceEEEEEecCc----eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS----HVDTFSNDL---------SSSGSVKSITFHITK----IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~----~~~~~~~~~---------~~~~~v~~l~~~~~~----l~~ 87 (357)
-.+-|.++.|+ |++||||..+ .|.++.-.+... ....++... .-...|..+.|.+++ ++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35679999999 9999999999 999997622222 122232200 124678999999764 788
Q ss_pred eecCCeEEEEecCCccceeeeeecCccc-----cceeeeecCCCeEEEeccccccc-ccccccEEEEEEec-CeEEEEec
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVK-----DRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ-GLMYSVSW 160 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~l~~~~~ 160 (357)
.+.|.+|++|.+........-..++... ..+..+........+.....+++ ..|.-.|+++.++. ...+..+.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999987544322111110000 00000111111112222222333 57899999999999 44444555
Q ss_pred CCeEEEEEcCcch-hhh--hcc----ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccc------ccee
Q 038568 161 DRSFKIWNASNYK-CLE--SVN----KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERK------SRHM 225 (357)
Q Consensus 161 dg~i~iwd~~~~~-~~~--~~~----~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~ 225 (357)
|=.|.+|+++--. ... .++ ......|++..|+|.. .++-.+..|+|++.|++......... ....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7889999876321 111 110 1223568889999976 58888999999999998322111000 0011
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc------------cce---EEEeecCc
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT------------GAL---LCLINVGD 290 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------~~v---~~~~~~~~ 290 (357)
...-+.+--..|..+.|+++|+++++-+. -+|++||+.....+.. +..-|. ..| ..++|+|+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~--t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE--TYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce--EEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11112223356889999999999998654 5699999964443222 222221 122 45678887
Q ss_pred --eEEEecCCCeEEEeeCCC
Q 038568 291 --LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~ 308 (357)
+++||+..+..++++...
T Consensus 341 ~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cceEecccccceEEEecCCC
Confidence 999999999999999544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=120.49 Aligned_cols=199 Identities=17% Similarity=0.266 Sum_probs=147.3
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhcc---ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccc--------
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVN---KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKE-------- 219 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~-------- 219 (357)
--++.|-.-|.+.+.|....+....+. ...+..++|+.|-|.+ .++++-.+|.+++||.........
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 456777778999999987643333221 2235789999999866 688889999999998643211100
Q ss_pred ----------cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 220 ----------RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 220 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
......++..+.--.+.|...+|+|||++||+.+.||.+||||..+.+.+ ..++..-+..+|++|+|
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl---g~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL---GVMKSYFGGLLCVCWSP 342 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH---HHHHhhccceEEEEEcC
Confidence 00111233334444567899999999999999999999999999987643 33333456789999998
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC----------------------------CCCC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS----------------------------SASN 339 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------------~~~~ 339 (357)
| +|++|++|--|.||.+... +.+..-++|+++|+.++|.|--. ..+.
T Consensus 343 DGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred CccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 8 9999999999999999986 88999999999999999984110 0011
Q ss_pred -------------CeEEEEEcCCCCeEEecC
Q 038568 340 -------------GIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 340 -------------~~~~l~s~~~dg~v~~wd 357 (357)
..+.|.+.|.|-++.+||
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWD 450 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWD 450 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEe
Confidence 236799999999999998
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=120.88 Aligned_cols=248 Identities=15% Similarity=0.237 Sum_probs=175.4
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
..+.. |.+.|..+.|+..+ |++++.|..|.+||+...+....+.. +
T Consensus 136 ~kL~~---H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-----------------------------G 183 (559)
T KOG1334|consen 136 KKLNK---HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-----------------------------G 183 (559)
T ss_pred hcccC---CCCccceeeecccCceeeccCccceEEeehhhccCccccccc-----------------------------c
Confidence 34554 99999999999876 99999999999999988765444332 8
Q ss_pred ccccEEEEEEec----CeEEEEecCCeEEEEEcCc-chhh--hhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEc
Q 038568 141 HWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN-YKCL--ESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWER 211 (357)
Q Consensus 141 ~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~ 211 (357)
|...|..-.|.| ..+++++.||.+++=.+.. +.+. ..+ ..|.++|..++.-|+. .|.+++.|+.+.-+|+
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeee
Confidence 999998888988 7899999999999877643 2222 233 6789999999999987 4999999999999999
Q ss_pred cccccccccccceeeeeEeecccc---ceeEEEEecCC-CEEEEEecCCeEEEEecccCCcee---eeeec------cCC
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRS---TVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMV---FAEAL------WGH 278 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~------~~~ 278 (357)
+ ......... ....+.. ..+.++.+|.. ..+++|+.|..+++||.+.-..-. .+..+ ...
T Consensus 263 r------~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 263 R------QDVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred c------cCCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 8 322222222 2222222 56788999944 489999999999999987432210 11111 122
Q ss_pred ccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc---------eeeee-eecCCcC--ceEEEEE-eeCCCCCCCCeEE
Q 038568 279 TGALLCLINVGD--LLASGSADRTVRIWQRGKENC---------YRCMA-FLEGHEK--PVKSLVA-ISSSSSASNGIVS 343 (357)
Q Consensus 279 ~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~---------~~~~~-~~~~h~~--~v~~~~~-~~~~~~~~~~~~~ 343 (357)
...|+++.|+.+ -|+++-.|-.|+++.-.-+.. ...+. ..++|.. .|.++-| -|... +
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-------y 408 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-------Y 408 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-------e
Confidence 345789999833 555555566799995443211 01122 2677764 4666654 46666 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++||+=|.|.|||
T Consensus 409 VvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWD 422 (559)
T ss_pred EEecCccceEEEEe
Confidence 99999999999997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=105.57 Aligned_cols=306 Identities=12% Similarity=0.107 Sum_probs=186.4
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+..+.+..+.+. --+.|.-+.|. .. .|..+..+ .|.+|++ ...+-...+.. ...++.+++|+|++
T Consensus 35 d~~tlq~~qlf~------cldki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIde---g~agls~~~WSPdgr 104 (447)
T KOG4497|consen 35 DSETLQLHQLFL------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDE---GQAGLSSISWSPDGR 104 (447)
T ss_pred ccchhhHHHHHH------HHHHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEecc---CCCcceeeeECCCcc
Confidence 334444444444 33557778887 33 44555677 9999999 77777777776 78899999999998
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE-Eecccc----------------cccccccccE
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT-VRRHKK----------------RLWLEHWDAV 145 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~v 145 (357)
|.+...+-.|.||.+.+.+...... +.... ....+.+++... +..... +.+.-.+-..
T Consensus 105 hiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~-kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 105 HILLTSEFDLRITVWSLNTQKGYLLPH--PKTNV-KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred eEeeeecceeEEEEEEeccceeEEecc--cccCc-eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 7788889999999998765422111 11111 112222222211 111110 1111222334
Q ss_pred EEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccc-----
Q 038568 146 SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE----- 219 (357)
Q Consensus 146 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----- 219 (357)
+.+.|+|+ +..+.+||.--.-.+..+ ...-.+..++|+|.+ .|++|+.|+.+|+.+--+-+...+
T Consensus 182 tgieWsPd-------g~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 182 TGIEWSPD-------GNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred cCceECCC-------CcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 55666651 345677875333333332 344678899999977 599999999998755321110000
Q ss_pred ---------------------------------------c------ccceeeeeEe------eccccceeEEEEecCCCE
Q 038568 220 ---------------------------------------R------KSRHMLVTTL------VKHRSTVNALALNGDGSL 248 (357)
Q Consensus 220 ---------------------------------------~------~~~~~~~~~~------~~~~~~v~~~~~~~~~~~ 248 (357)
. ......+..+ ......+.-++|++|..+
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y 332 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY 332 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence 0 0000011111 112334667999999988
Q ss_pred EEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 249 LFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 249 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+++-.. -+.+-+||++..+.. .......+|.++.|+|. .|+.+.....+++|...-. ..+... +..-.
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~l~----avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~---~~V~vP-~~GF~ 404 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLKLH----AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP---RVVGVP-KKGFN 404 (447)
T ss_pred EeeecCCCCceEEEEechhhhhh----hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc---eEEecC-CCCce
Confidence 887644 356999999876532 22235678999999987 6666666677999988753 334332 23367
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
|..+.|.-++. .++-.+.|..
T Consensus 405 i~~l~W~~~g~-------~i~l~~kDaf 425 (447)
T KOG4497|consen 405 IQKLQWLQPGE-------FIVLCGKDAF 425 (447)
T ss_pred eeeEEecCCCc-------EEEEEcCCce
Confidence 99999999998 8888888854
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-14 Score=119.97 Aligned_cols=186 Identities=13% Similarity=0.026 Sum_probs=118.8
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEE-eCCCeEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTG-SADGRIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d~~i~i~d 210 (357)
.+...+.+..|+| +.|+.++.+ ..|++||+.+++. +..+ .......+|+||| +|+.+ ..+|.+.+|.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~----~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF----RGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC----CCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 5667899999999 677776653 3699999988753 3222 2233468999999 46655 4688776665
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+.. .......+..+...+....|+|||+.|+..+ .+|...||+++....... .+ .+.. ....|+|
T Consensus 277 ~d~---------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 277 MGA---------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQISA 342 (429)
T ss_pred EEC---------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCccCCC
Confidence 431 0112233445666788899999999777554 578888888754322111 11 2222 2334554
Q ss_pred --ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 290 --DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 290 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++|+..+.++ +.+||+.+++... + ...+ ....+.|+|+++ +|+.++.+|.+.+|
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~-l--t~~~--~~~~~~~sPdG~-------~i~~~s~~g~~~~l 398 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEV-L--SSTF--LDESPSISPNGI-------MIIYSSTQGLGKVL 398 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEE-e--cCCC--CCCCceECCCCC-------EEEEEEcCCCceEE
Confidence 4777777665 5669998874221 1 1122 235678999998 88888888887766
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-13 Score=113.34 Aligned_cols=231 Identities=10% Similarity=0.046 Sum_probs=140.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee---cCCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH---QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.+||. +... .+.+.. +...+.+.+|+||+ |+..+ .+..|.+|++.+++.. .+..+
T Consensus 180 ~l~~~d~-dg~~-~~~lt~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~------------ 241 (429)
T PRK03629 180 ELRVSDY-DGYN-QFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF------------ 241 (429)
T ss_pred eEEEEcC-CCCC-CEEeec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCC------------
Confidence 7999998 5543 344444 67789999999997 55433 3457999999876532 22211
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEEE-EecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS-VSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
...+....|+| +.|+. .+.+| .|.+||+.+++..... .+...+....|+|+|. |
T Consensus 242 ------------------~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 242 ------------------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred ------------------CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceEECCCCCEE
Confidence 12234578999 55554 34455 5889999877654332 3345677899999994 6
Q ss_pred EEEeC-CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeee
Q 038568 198 YTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAE 273 (357)
Q Consensus 198 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 273 (357)
+..+. ++...+|.+... . .. ...+...........|+|||++|+..+.+ ..|.+||+.++... .+.
T Consensus 302 ~f~s~~~g~~~Iy~~d~~----~----g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNIN----G----GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred EEEeCCCCCceEEEEECC----C----CC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 55554 455555544310 1 11 12222233445678999999988876543 35888999877532 222
Q ss_pred eccCCccceEEEeecCceEEEecCCCe---EEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 274 ALWGHTGALLCLINVGDLLASGSADRT---VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
. .....-..++.++.+|+.++.++. +.++++.. .....+.+|.+.+...+|+|-
T Consensus 372 ~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 372 D--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCCC
Confidence 1 111222234444457777776653 67777754 334556678888999999873
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-13 Score=100.39 Aligned_cols=261 Identities=16% Similarity=0.218 Sum_probs=174.5
Q ss_pred ceEEEeccCCccccc--eeccccCCCCceEEEEEec---Cc---eEEeecCCeEEEEecCCccceeeeeecCccccceee
Q 038568 49 EINVFDLISDYSHVD--TFSNDLSSSGSVKSITFHI---TK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~---~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.+.+|++ .+.+... +++. .....+..+.|.- ++ ++-+..+|.|.++..........+..+....
T Consensus 47 kl~Lys~-~d~~~~~l~~~q~--~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k----- 118 (339)
T KOG0280|consen 47 KLHLYSL-EDMKLSPLDTLQC--TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK----- 118 (339)
T ss_pred ceEEEee-cccccCccceeee--ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh-----
Confidence 5778888 5544433 2221 1455677888873 22 7778888999999877554433333332110
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCC-
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~- 195 (357)
-......++.|++ ..++++-.+|.+.+-+...... ++.+ +.|.-+..-..|+...
T Consensus 119 -------------------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 119 -------------------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEP 178 (339)
T ss_pred -------------------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCC
Confidence 0011345677777 6788888899998666544433 3356 7899899888887654
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
.+.+|+.|+.+..||+|.+ ........+.|...|.++.-+| .+.++++|+.|-.|++||.++..++....
T Consensus 179 nlvytGgDD~~l~~~D~R~p--------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIP--------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred ceEEecCCCceEEEEEecCC--------cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 6999999999999999821 1222333567889999998887 67899999999999999999655432222
Q ss_pred eccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcc--eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 274 ALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENC--YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
. -.+.|..+.++|. .|+++-.+| .+|-+.+.+.. ...+...+.|.+-+..-.|..... +|+|+
T Consensus 251 ~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-------~lATC 319 (339)
T KOG0280|consen 251 K---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-------FLATC 319 (339)
T ss_pred c---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccc-------eeeee
Confidence 1 3377899988886 355555555 67777765421 124556677888788888855444 78987
Q ss_pred C-CCCeEE-ec
Q 038568 348 S-LNGEIK-VW 356 (357)
Q Consensus 348 ~-~dg~v~-~w 356 (357)
+ .|+.++ +|
T Consensus 320 sFYDk~~~~~W 330 (339)
T KOG0280|consen 320 SFYDKKIRQLW 330 (339)
T ss_pred eccccceeeee
Confidence 7 677755 66
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-13 Score=104.30 Aligned_cols=196 Identities=16% Similarity=0.266 Sum_probs=135.8
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~ 217 (357)
+..+..++|++ ..++++..|-.|++||-+. ++...++......|+|++|-|.+ .|++|+. +.|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34678899999 7788999999999999766 55555555667889999999987 4777766 56889987521110
Q ss_pred ccc----ccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 218 KER----KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 218 ~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
... ......+....+| .+|++|.|++||..+++++- |..|.|||.+++...... . -..+.+.-+.|+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~--~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-P--KGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-c--cCCCceeeEEEcCCCC
Confidence 000 0001112223344 78999999999999998875 678999999988765333 1 23344556666665
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
+|.++.-|+..++|+.... +......-+ .+.|...+|+|+++ .+|++.+..-.
T Consensus 252 ~lfaAt~davfrlw~e~q~--wt~erw~lg-sgrvqtacWspcGs------fLLf~~sgsp~ 304 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQS--WTKERWILG-SGRVQTACWSPCGS------FLLFACSGSPR 304 (445)
T ss_pred EEEEecccceeeeehhccc--ceecceecc-CCceeeeeecCCCC------EEEEEEcCCce
Confidence 9999999999999976543 222333333 34899999999998 45666655443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=102.89 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=157.5
Q ss_pred cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
++++++.. .+ .|.+.|. .+.+.+..+.. ....-..+.|+||+ +++++.||.|.++|+.+.+....+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---- 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---- 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----
Confidence 56665555 44 9999999 89899999985 44443457789976 77888999999999999987766653
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcchhhhhcccc------cccc
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKCLESVNKA------HEDA 185 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~ 185 (357)
......+++++ ++++++. .++.+.++|.++.+.+..+... ....
T Consensus 77 ---------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 77 ---------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESR 129 (369)
T ss_dssp ---------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred ---------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCC
Confidence 23456788888 6666554 6899999999999988877321 2346
Q ss_pred EEEEEEecCCe-EEEE-eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEe
Q 038568 186 VNAVVVSDNGV-VYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWE 262 (357)
Q Consensus 186 v~~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd 262 (357)
+.++..+|... ++.. -..+.|.+.|... . ..................|+|++++++++ ..++.|-++|
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d------~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSD------P---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTT------S---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEecc------c---cccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 77887777773 4444 4458888888761 1 11222222334556788999999987665 4577899999
Q ss_pred cccCCceeeeee-ccCCccceEEE-----------eecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 263 RERDHRMVFAEA-LWGHTGALLCL-----------INVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~v~~~-----------~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
..+.+....+.. ...|..+...+ .-.+...++.-....+.+||..+. +.+..+.....+ ..+..
T Consensus 201 ~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 201 TKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp TTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEEEEEE-SSSS---EE-
T ss_pred eccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEEEEEECCCCc-ceeec
Confidence 988765443322 11233333222 222223322222335667877764 667777776666 78888
Q ss_pred eeCCCCCCCCeEEEEEc----CCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSG----SLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~----~~dg~v~~wd 357 (357)
+|+++ ++... ...++|.++|
T Consensus 277 hP~s~-------~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 277 HPDSR-------YVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp -TT-S-------EEEEE-TT-SSHT-EEEEE
T ss_pred CCCCc-------cEEeeccCCCCCceEEEEE
Confidence 99998 77766 4456777765
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=102.54 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=164.0
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+..+.+.+..+.. ....-..+.|+ |+++++++.| .|.++|+ .+.+.+++++ .......+++++|+
T Consensus 22 D~~t~~~~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~-~~~~~v~~i~----~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 22 DGATNKVVARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDL-ATGKVVATIK----VGGNPRGIAVSPDGKY 91 (369)
T ss_dssp ETTT-SEEEEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEET-TSSSEEEEEE-----SSEEEEEEE--TTTE
T ss_pred ECCCCeEEEEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEEC-CcccEEEEEe----cCCCcceEEEcCCCCE
Confidence 3445677777774 33333346677 8999999999 9999999 9999999998 55667899999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEec
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVSW 160 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~ 160 (357)
+++...++.+.++|.++.+..+.+....... ......+..+..++ . ++++.-.
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----------------------~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----------------------DGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-T-----------------------TTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEecCCCceeEeccccccceeecccccccc-----------------------cccCCCceeEEecCCCCEEEEEEcc
Confidence 4455578999999999887766654321000 01345677777777 4 4444444
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEe----eccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL----VKHR 234 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (357)
.+.|.+-|....+.+..-............|+|++ + +++...++.|.++|... .+....+ ..|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~----------~k~v~~i~~g~~p~~ 218 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT----------GKLVALIDTGKKPHP 218 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT----------TEEEEEEE-SSSBEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc----------ceEEEEeeccccccc
Confidence 58888888776544332213445667788999998 4 45556778999999872 1222211 1222
Q ss_pred cceeEE-------EEe--cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe----cCCC
Q 038568 235 STVNAL-------ALN--GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG----SADR 299 (357)
Q Consensus 235 ~~v~~~-------~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~----~~dg 299 (357)
.+...+ .|. ..+...++.-....+.+||..+.+....+ ...... .-+..+|+ ++.+. ...+
T Consensus 219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I---~~~G~g-lFi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI---PTQGGG-LFIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE---E-SSSS---EE--TT-SEEEEE-TT-SSHT
T ss_pred cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE---ECCCCc-ceeecCCCCccEEeeccCCCCCc
Confidence 222221 121 12233323333345667888877744333 333334 44444554 77776 4568
Q ss_pred eEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 300 TVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
.|.++|.++. +.+..+.. ....+..+.|+++++ ...+|.- .+|.|.+||
T Consensus 295 ~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~------~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 295 TVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGK------EVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSS------EEEEEEE--TTEEEEEE
T ss_pred eEEEEECcCc---ceeEEEeccCCCcEeccEECCCCC------EEEEEEecCCCEEEEEE
Confidence 9999999986 44444432 223588999999997 2334443 344798886
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=108.16 Aligned_cols=234 Identities=15% Similarity=0.171 Sum_probs=157.3
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+...-+.|..+||+ +++|..--.|++||+..-...-.- .....+..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------------------hlDae~V~ 98 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------------------HLDAEVVD 98 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------------------ccccccee
Confidence 78888999999998 888999999999999864322111 11122222
Q ss_pred E-EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccc
Q 038568 148 L-VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 148 ~-~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
+ ..+. ..++--..|.+|-+...- |.. ..+ .-...-..++++.-. -|+.++....|+-+++. .
T Consensus 99 feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~--RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE----------q 164 (703)
T KOG2321|consen 99 FEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRT--RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE----------Q 164 (703)
T ss_pred EEEeccchhhheEeecCceeeehhhc-Cee-eee--ecCcCCccccccCCCccEEEeecCcceEEEEcc----------c
Confidence 2 2222 334444456666554321 111 111 122334566666544 47777777788888987 5
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee---ccCCcc-----ceEEEeecCc--eEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA---LWGHTG-----ALLCLINVGD--LLA 293 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~-----~v~~~~~~~~--~l~ 293 (357)
+..+..+....+.++++..++...+|++|+.+|.|..||.++......+.. ...|.+ .|+++.|..+ .++
T Consensus 165 GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 165 GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 667777777778999999999888999999999999999997665433322 222333 3899999886 899
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|..+|.+.|||+++.++. +..-++..-+|..+.|.+.+. +..++|.. ...++|||
T Consensus 245 VGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~-----q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQ-----QNKVVSMD-KRILKIWD 300 (703)
T ss_pred eeccCCcEEEEEcccCCce--eecccCCccceeeecccccCC-----CceEEecc-hHHhhhcc
Confidence 9999999999999987422 333344556899999988732 12566663 56789997
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-12 Score=110.49 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=136.0
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.+||. +. ...+.+.. +...+.+.+|+|++ |+..+. +..|.+||+.+++.. .+.
T Consensus 185 ~l~i~D~-~g-~~~~~lt~---~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~-------------- 244 (433)
T PRK04922 185 ALQVADS-DG-YNPQTILR---SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVA-------------- 244 (433)
T ss_pred EEEEECC-CC-CCceEeec---CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eec--------------
Confidence 6899998 54 34444554 77889999999997 666553 346999999876532 221
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
...+...+..|+| +.+ ++.+.+| .|.+||+.+++.. .+ ..+.......+|+|++. |
T Consensus 245 ----------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l-t~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 245 ----------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL-TNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred ----------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC-ccCCCCccceEECCCCCEE
Confidence 1223344678888 444 4555555 5999999887643 33 34444556789999994 5
Q ss_pred EEEe-CCCe--EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceee
Q 038568 198 YTGS-ADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~ 271 (357)
+..+ .+|. |.++|+. . .. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .
T Consensus 307 ~f~sd~~g~~~iy~~dl~------~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~ 374 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAAS------G----GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T 374 (433)
T ss_pred EEEECCCCCceEEEEECC------C----CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E
Confidence 5554 4455 5555554 1 11 111112223345689999999988765433 6999999876532 2
Q ss_pred eeeccCCccceEEEeecCc--eEEEecC---CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSA---DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+. .+ .......|+++ +|+..+. .+.|.++++... ....+..+.+.+...+|+|
T Consensus 375 Lt--~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 375 LT--PG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC--CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence 21 11 12223455544 5554443 346777887543 2334444556677778876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-12 Score=108.19 Aligned_cols=229 Identities=12% Similarity=0.048 Sum_probs=134.5
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +. ...+.+.. +...+.+.+|+||+ |+..+. ...|.+||+.+++... +.
T Consensus 177 ~L~~~D~-dG-~~~~~l~~---~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-------------- 236 (427)
T PRK02889 177 QLQISDA-DG-QNAQSALS---SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA-------------- 236 (427)
T ss_pred EEEEECC-CC-CCceEecc---CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee--------------
Confidence 6777776 43 44444544 77889999999997 665553 2459999998775432 22
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEc--CcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNA--SNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
.....+....|+| +.|+ +.+.+|...+|.+ ..+. ...+ ..+........|+|||. |
T Consensus 237 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-t~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 237 ----------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-TQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred ----------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-CCCCCCCcCeEEcCCCCEE
Confidence 1223455788999 4554 5677887666654 3333 3444 33444556788999994 5
Q ss_pred EEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceeeee
Q 038568 198 YTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVFAE 273 (357)
Q Consensus 198 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 273 (357)
+..+ .++...+|.+... ....+.+ .. ........+|+|+|++|+..+.++ .|.+||+.+++.....
T Consensus 299 ~f~s~~~g~~~Iy~~~~~------~g~~~~l-t~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt- 368 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPAS------GGAAQRV-TF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT- 368 (427)
T ss_pred EEEecCCCCcEEEEEECC------CCceEEE-ec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-
Confidence 5444 4566777766411 1111111 11 222344678999999998776654 6999999877532211
Q ss_pred eccCCccceEEEeecCc--eEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 274 ALWGHTGALLCLINVGD--LLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~--~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
... ......|+++ .|+..+. .| .+.+.++. + .....+..+.+.+...+|+|-
T Consensus 369 --~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 --DTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --CCC--CccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccCCC
Confidence 111 1233455554 5554443 33 35555553 3 233444456667777888874
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-14 Score=117.61 Aligned_cols=297 Identities=15% Similarity=0.172 Sum_probs=198.8
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC--
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-- 83 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 83 (357)
++..++.-..-.++ -.+++.++..+ |+-+|.++.--+.+-|+.+.+.+.+-+... ..-.|-...|+|.
T Consensus 9 pyns~tf~kslsl~------v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 9 PYNSPTFGKSLSLK------VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPA 80 (1081)
T ss_pred CCCCCccCceeEEE------ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeecc--CcchhcceecccCCC
Confidence 34555665666666 56778888888 888999987767777875556666655520 2335677888864
Q ss_pred --c-eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeE
Q 038568 84 --K-IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLM 155 (357)
Q Consensus 84 --~-l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 155 (357)
. +++.+. ..-.+|++..... +..+ +.+|...|+++.|++ ..+
T Consensus 81 ~~~wiVsts~-qkaiiwnlA~ss~~aIef~-----------------------------lhghsraitd~n~~~q~pdVl 130 (1081)
T KOG0309|consen 81 KPYWIVSTSN-QKAIIWNLAKSSSNAIEFV-----------------------------LHGHSRAITDINFNPQHPDVL 130 (1081)
T ss_pred CceeEEecCc-chhhhhhhhcCCccceEEE-----------------------------EecCccceeccccCCCCCcce
Confidence 2 555444 4566898864432 2222 238999999999999 899
Q ss_pred EEEecCCeEEEEEcCcch-hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 156 YSVSWDRSFKIWNASNYK-CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
++++.|-.+..||+++.. ++..+ ..-...-..++|+... .+++.+..+.|.+||.+ ....++..+++|
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r---------~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR---------KGSTPLCSLKGH 200 (1081)
T ss_pred eeccccccceeeeccCCCcceeee-ecccccCceeeecccCcchhhhccCCceEEEecc---------CCCcceEEeccc
Confidence 999999999999998754 44444 4445566778888644 57777888999999998 245677888889
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee--cCc--eEEEe---------cCCC
Q 038568 234 RSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN--VGD--LLASG---------SADR 299 (357)
Q Consensus 234 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~~~---------~~dg 299 (357)
...|+.++|+. ....+.+++.|++|+.||.......... ......++..-.+ -++ ++.-. --++
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--eccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 99999999986 3346889999999999998754321111 1112223322222 122 11111 1122
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC---CCCeEEEEEcCCCCeEEec
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA---SNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~~l~s~~~dg~v~~w 356 (357)
....|+..++ .++++.+.||.+.|....|-..+... +.....|+|-+.|..+|+|
T Consensus 279 ~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 279 SDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred hhhhhccccC--CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2334444443 47799999999999888886543311 2224689999999999999
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-12 Score=102.96 Aligned_cols=248 Identities=15% Similarity=0.239 Sum_probs=161.5
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
++....||.+++|+...++..+.+.........-....+. +.+.....+... .......+-....++-|...|.|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~~--~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWLS--LEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHHh--HHHHhhccCCceEEEeecCCccE
Confidence 8888999999999999888766665443221111111000 000000000000 00000001111578889999999
Q ss_pred EEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 165 KIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
.+|++..++....+. ..|.+.|+++.++.+- .|.+++.|+.+..|+.. .....+........+.+++.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----------~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----------EKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----------cceeeeeeccCCCccceEEE
Confidence 999999998887775 6789999999988765 59999999999999987 56677777888888999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-------Cc-eEEEecCCCeEEEeeCCCC-ccee
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-------GD-LLASGSADRTVRIWQRGKE-NCYR 313 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~~~~~dg~i~vw~~~~~-~~~~ 313 (357)
+||+..+++++ ++|++||+++.+ .+..+.+|.++|.+++|- ++ .|.+...+..+.+|-+... +...
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks 227 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKS 227 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccch
Confidence 99999999886 679999999887 677889999999998874 33 4555566777888887652 1122
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
....+....-+|+.=.+.... ..+...+++.-.+|.+..
T Consensus 228 ~~~sl~~~dipv~~ds~~~ed---~~~~l~lAst~~~g~v~~ 266 (541)
T KOG4547|consen 228 LSCSLTVPDIPVTSDSGLLED---GTIPLVLASTLIPGIVHL 266 (541)
T ss_pred hheeeccCCCCeEeccccccc---cccceEEeeeccCceeee
Confidence 223333333333322222211 112245666666666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-12 Score=96.07 Aligned_cols=108 Identities=16% Similarity=0.265 Sum_probs=81.3
Q ss_pred ccccEEEEEEec--CeEEE--EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeC---CCeEEEEEcc
Q 038568 141 HWDAVSDLVVKQ--GLMYS--VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA---DGRIRVWERS 212 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~ 212 (357)
..++|.+++|+| +.+++ |..++.|.+||++ ++.+..+ ....++.+.|+|+| ++++++. .|.|.+||.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 445799999999 55443 4467899999996 5666655 35677899999999 4666653 4779999997
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec------CCeEEEEecc
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC------DRWIVVWERE 264 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~ 264 (357)
..+.+.... | ..++.++|+|+|++|+++.. |+.++||+..
T Consensus 134 ----------~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 134 ----------KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ----------CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 344444443 3 34789999999999999875 7789999986
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=101.83 Aligned_cols=185 Identities=19% Similarity=0.300 Sum_probs=149.9
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEe------c--------------Cc--eEEeecCCeEE
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH------I--------------TK--IFTAHQDCKIR 95 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~------~--------------~~--l~~~~~d~~i~ 95 (357)
..++|....| .+++|+. ..++....|.......+..++..|. | +. ++-|...|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5789999999 9999999 7777777776544345566666663 2 11 77788889999
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
+|++..++....+... .|.+.|.++.++. ..|.+++.|+.+..|+...++
T Consensus 84 ~ys~~~g~it~~~st~----------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTD----------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEEecCCeEEEEEecC----------------------------CCCCcceeeecccccCceEecCCceeEEEEecccce
Confidence 9999988876666543 8999999999888 899999999999999999988
Q ss_pred hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-----CC
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-----GS 247 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 247 (357)
.+..+ ......+.+++++||+ .+++++ +.|++||++ ..+.+..+.+|.++|.++.|-.+ |.
T Consensus 136 ~~~~~-~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~----------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 136 IIRIW-KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIE----------TKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eeeee-ccCCCccceEEEcCCCCEEEecc--ceEEEEEcc----------CceEEEEecCCCcceEEEEEEEeccccccc
Confidence 88888 7788889999999998 466665 689999998 67889999999999999999876 66
Q ss_pred EEEEEe-cCCeEEEEeccc
Q 038568 248 LLFSGG-CDRWIVVWERER 265 (357)
Q Consensus 248 ~l~~~~-~dg~i~vwd~~~ 265 (357)
+++++. .+.-+.+|-.+.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 666554 455577887664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=99.37 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=157.0
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcC-cchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS-NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 213 (357)
+++|.+.+++...-| .-+++.+.|.++++|--+ .++.-..+......+++++.+.++. +|++|-..|++.-+.+.
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s- 98 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS- 98 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh-
Confidence 358888888888888 889999999999999543 4554444434567889999999988 48899999999988876
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc----------------------------
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER---------------------------- 265 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------------------------- 265 (357)
..-......+....|...+..+.|+-...++++.+.|..+.---.+.
T Consensus 99 -----edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 99 -----EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred -----hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 22234445566667888888888887767777777665443211110
Q ss_pred ----------CCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 266 ----------DHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 266 ----------~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.....++..+.+|.+.+.+++|++. .|.+|..|..+.+||+--.+ .....+.+|.+.|..+...+-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhhhhhhh
Confidence 0112245567889999999999987 99999999999999997653 446778899999999998888
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+ .+.+++.||.|.+||
T Consensus 252 t~-------~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 252 TR-------QLISCGEDGGIVVWN 268 (404)
T ss_pred he-------eeeeccCCCeEEEEe
Confidence 77 999999999999997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-11 Score=103.45 Aligned_cols=226 Identities=9% Similarity=-0.007 Sum_probs=137.4
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +. ...+.+.. +...+.+.+|+||+ |+..+. +..|.+||+.+++.. .+.
T Consensus 183 ~l~~~d~-dg-~~~~~lt~---~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------------- 242 (435)
T PRK05137 183 RLAIMDQ-DG-ANVRYLTD---GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------------- 242 (435)
T ss_pred EEEEECC-CC-CCcEEEec---CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee--------------
Confidence 7888887 54 44455555 88899999999997 665543 468999999877542 221
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
.+.+.+....|+| +.| ++.+.++. |.+||+.+++.. .+ ..+........|+||+. +
T Consensus 243 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-t~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 243 ----------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-TDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred ----------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ec-cCCCCccCceeEcCCCCEE
Confidence 3344566788998 444 45666655 777788776543 34 34455567789999994 5
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceee
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~ 271 (357)
+..+ .+| .|.++|+. . .. ...+..+...+....|+|+|+.|+....+ ..|.+||+..+... .
T Consensus 305 ~f~s~~~g~~~Iy~~d~~------g----~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~ 372 (435)
T PRK05137 305 VFESDRSGSPQLYVMNAD------G----SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-I 372 (435)
T ss_pred EEEECCCCCCeEEEEECC------C----CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-e
Confidence 5544 333 57777765 1 11 12222234456678899999998876643 36888888654421 2
Q ss_pred eeeccCCccceEEEeecCc--eEEEecC-C-----CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSA-D-----RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~-d-----g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+. .+ ..+....|+|+ .|+..+. . ..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 373 lt--~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 373 LT--SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cc--CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCCC
Confidence 21 11 22444556654 5544332 2 3578888866422 2222 2334566677763
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.7e-12 Score=93.88 Aligned_cols=107 Identities=10% Similarity=0.203 Sum_probs=78.0
Q ss_pred cccceeEEEEecCCCEEEEE--ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC---CCeEEEee
Q 038568 233 HRSTVNALALNGDGSLLFSG--GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA---DRTVRIWQ 305 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~ 305 (357)
..++|.+++|+|+|+.+++. ..++.|.+||++ .+ .+..+ +...+..+.|+|+ +|++++. .|.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~---~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK---KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc---EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34579999999999986554 457899999997 33 23333 2345667778776 7777764 46799999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC------CCeEEecC
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL------NGEIKVWD 357 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~------dg~v~~wd 357 (357)
+++. +.+.... | ..++.++|+|+++ +|+++.. |..++||+
T Consensus 132 ~~~~---~~i~~~~-~-~~~t~~~WsPdGr-------~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKK---KKISTFE-H-SDATDVEWSPDGR-------YLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCC---EEeeccc-c-CcEEEEEEcCCCC-------EEEEEEeccceeccccEEEEE
Confidence 9975 5555443 3 3478999999999 8888764 77788885
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-12 Score=110.69 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=141.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceE--EE---EEecCc--eEEeecCCeEEEEecCCccceeeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVK--SI---TFHITK--IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~--~l---~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
...++.+..+ .+.+||. ........+. +....+ ++ .++++. +++|+.-+.|.+|++........
T Consensus 99 ~k~i~l~~~~ns~~i~d~-~~~~~~~~i~----~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~--- 170 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDS-KNSSVLSKIQ----SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR--- 170 (967)
T ss_pred cceEEEEEcCceEEEEec-ccCceehhcC----CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce---
Confidence 5677777777 9999999 6666666655 333322 22 233443 89999999999999873322211
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
+.+|.+.|.++.++. .++++.|.|.++++|++.+.+.....--+|...+..
T Consensus 171 ---------------------------l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 171 ---------------------------LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred ---------------------------ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 129999999999977 999999999999999999988777333699999999
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+++.|+ ++++++.|-+.++|+.. ...+..+.+|. ..+..++..++...+++++.|+.+++|++.
T Consensus 224 ~~~~~n-~i~t~gedctcrvW~~~-----------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 224 CCFLPN-RIITVGEDCTCRVWGVN-----------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccc-eeEEeccceEEEEEecc-----------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 999999 99999999999999765 33344666675 468999999999999999999999999985
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-10 Score=95.96 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=108.3
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccc---c------EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHED---A------VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~------v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..++.+..+|.+..+|.++++.+......... . +.+-..-.++.+++++.+|.++.+|.++ +
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G--- 261 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------G--- 261 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------C---
Confidence 56778888899999999998876543111100 0 1110111255788888999999999872 2
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRI 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~v 303 (357)
+...... .. ...... ..+..+++++.||.++.+|..+++.+.....+.. .........++.+++++.+|.|++
T Consensus 262 -~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 262 -RVLWKRD-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAVVGGYLVVGDFEGYLHW 334 (377)
T ss_pred -cEEEeec-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEEECCEEEEEeCCCEEEE
Confidence 2222221 11 111222 2456788888999999999998875432222211 112222345678999999999999
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|..++ +.+..+..+...+..--...++ .|+.++.||.|..+
T Consensus 335 ~d~~tG---~~~~~~~~~~~~~~~sp~~~~~--------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDG---SFVARLKTDGSGIASPPVVVGD--------GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCC---CEEEEEEcCCCccccCCEEECC--------EEEEEeCCceEEEe
Confidence 999988 4555555555444333223333 57778889998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=92.05 Aligned_cols=241 Identities=16% Similarity=0.081 Sum_probs=153.7
Q ss_pred ccceeEEEEe-----cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCC---ceEEEEEecCc--eEEeecCCeEEE
Q 038568 29 HMIISCLAVH-----NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG---SVKSITFHITK--IFTAHQDCKIRV 96 (357)
Q Consensus 29 ~~~i~~~~~s-----~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~--l~~~~~d~~i~v 96 (357)
...+..+.|. |. .++-+-.. .|.++.. +..+....+++.....- ...++.|++.+ ++++-.+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~-~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRN-DEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEee-ccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 3456667776 44 55566666 8889887 54444444443221221 23466777755 888888888885
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcC-cc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNAS-NY 172 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~-~~ 172 (357)
-+...... +.. +.|+.|.-+.+-..|+. +.+++|+.|+.+..||++ .+
T Consensus 148 v~~t~~~l-e~v---------------------------q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 148 VYETEMVL-EKV---------------------------QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred Eecceeee-eec---------------------------ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 44332211 111 34558889999998877 899999999999999999 34
Q ss_pred hhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC--CCE
Q 038568 173 KCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD--GSL 248 (357)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 248 (357)
+.+..-...|...|.+|.-+|.. ++++|+.|..|++||.|. ..+++..-. ..+.|+.+..+|. ++.
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn---------m~kPl~~~~-v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN---------MGKPLFKAK-VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc---------ccCccccCc-cccceEEEEecchhhhHH
Confidence 44444336788999999988764 699999999999999982 233333222 3488999999993 334
Q ss_pred EEEEecCCeEEEEecccCCce--eeeeeccCCccceEEEeecCc--eEEEec-CCCeEE-EeeCCCC
Q 038568 249 LFSGGCDRWIVVWERERDHRM--VFAEALWGHTGALLCLINVGD--LLASGS-ADRTVR-IWQRGKE 309 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~-vw~~~~~ 309 (357)
|+++-.+| .+|-+.+.+..- ........|.+-+..-.|+.. .|++++ .|+.++ +|-.-++
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55555555 777777654321 123344456555555555333 577765 366544 6654443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=100.23 Aligned_cols=329 Identities=15% Similarity=0.204 Sum_probs=206.5
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--------c------ceEEEeeCC-ceEEEeccCCccccceeccccCCCC
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--------N------SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG 73 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--------~------~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~ 73 (357)
-+..+.|.+++++. |...|+.+.|. + -+||++... .|.+||. ..+..+..+.. |..
T Consensus 40 VDs~s~q~iqsie~-----h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~---~~~ 110 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIEL-----HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSH---SND 110 (1062)
T ss_pred Eehhhhhhhhcccc-----CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcC---CCc
Confidence 35567888888887 99999999996 1 146666666 9999999 88888888887 999
Q ss_pred ceEEEEEecCc------eEEeecCCeEEEEecCCccceeeeeecCcc---------ccceeeeecCCCeEEEe-------
Q 038568 74 SVKSITFHITK------IFTAHQDCKIRVWKITASRQHQLVSTLPTV---------KDRLIRSVLPNNYVTVR------- 131 (357)
Q Consensus 74 ~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~------- 131 (357)
++..+.|-+.+ |++-....++.+|+..+|+..-........ ..+-.......+.+...
T Consensus 111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 99999998643 777777889999999888754322211110 00000000111111000
Q ss_pred ----cccccccccccc-------------------------cEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 132 ----RHKKRLWLEHWD-------------------------AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 132 ----~~~~~~~~~~~~-------------------------~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
++.-.+-..|++ ....++|+| +.++-......+.++|++-..++..+ .
T Consensus 191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv-p 269 (1062)
T KOG1912|consen 191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV-P 269 (1062)
T ss_pred CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE-E
Confidence 000011111111 122456777 44444445667999999988888877 5
Q ss_pred cccccEEEEEEecCC---eEEEEeCCCeEEEEEcccccccccc----------c--------------------------
Q 038568 181 AHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKER----------K-------------------------- 221 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~----------~-------------------------- 221 (357)
...+.+.-+.+-|+. .|++.-.||.+.+|-.+......+. .
T Consensus 270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~ 349 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSAL 349 (1062)
T ss_pred eccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhh
Confidence 555666677788876 3888999999999976532111000 0
Q ss_pred --------------c-------------------------------ceeeeeEeeccccceeEEEEec-----------C
Q 038568 222 --------------S-------------------------------RHMLVTTLVKHRSTVNALALNG-----------D 245 (357)
Q Consensus 222 --------------~-------------------------------~~~~~~~~~~~~~~v~~~~~~~-----------~ 245 (357)
. ....+....+|.....+....| .
T Consensus 350 avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~ 429 (1062)
T KOG1912|consen 350 AVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG 429 (1062)
T ss_pred hhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC
Confidence 0 0000000011222222222221 1
Q ss_pred C-------CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEec----------CCCeEEEeeCC
Q 038568 246 G-------SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGS----------ADRTVRIWQRG 307 (357)
Q Consensus 246 ~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~----------~dg~i~vw~~~ 307 (357)
+ .+++.|...|+|.++|+.++. ....+..|...|.++.|-+. .|++.+ .-+.+.+-|++
T Consensus 430 ~n~~~~~~pLvAvGT~sGTV~vvdvst~~---v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLr 506 (1062)
T KOG1912|consen 430 GNTPAGTVPLVAVGTNSGTVDVVDVSTNA---VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLR 506 (1062)
T ss_pred CCccceeeeeEEeecCCceEEEEEecchh---hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcc
Confidence 1 257889999999999999886 45567789999999999887 444433 23567788999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|-........+....+|+.+..+..++ ||+..=.|.-+.+||
T Consensus 507 tGlsk~fR~l~~~despI~~irvS~~~~-------yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 507 TGLSKRFRGLQKPDESPIRAIRVSSSGR-------YLAILFRREPLEIWD 549 (1062)
T ss_pred cccccccccCCCCCcCcceeeeecccCc-------eEEEEecccchHHHh
Confidence 8732221112334567899999999998 999988888888886
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-09 Score=86.06 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=154.6
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec----CCeEEEEecCCc-cceeeeeecCccccceeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ----DCKIRVWKITAS-RQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~----d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 121 (357)
.|.+|++......+..... .........++++|++ |+++.. ++.|..|++... ..+..+...+
T Consensus 14 gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--------- 83 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--------- 83 (345)
T ss_dssp EEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------
T ss_pred cEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------
Confidence 7888877222222222221 1144556778898876 666655 578999998865 3333333221
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCc-chhhhh---cc---------cccccc
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASN-YKCLES---VN---------KAHEDA 185 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~---------~~~~~~ 185 (357)
........+++++ ++|+++. .+|.|.++++.. +..... +. ......
T Consensus 84 ------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 84 ------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp ------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred ------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 1223445678877 6677666 489999999976 322211 10 112355
Q ss_pred EEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEec-CCeEEEE
Q 038568 186 VNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGC-DRWIVVW 261 (357)
Q Consensus 186 v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw 261 (357)
..++.++|++. ++ +.-....|.+|++. ...........+ .........++|+|+++++++..+ ++.|.++
T Consensus 146 ~H~v~~~pdg~~v~v~dlG~D~v~~~~~~------~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDLGADRVYVYDID------DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-------TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ceeEEECCCCCEEEEEecCCCEEEEEEEe------CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 77899999984 43 34446689999987 221112122222 234456789999999998866654 7889999
Q ss_pred eccc-CCceeeeeeccC----C--ccceEEEeec--CceE-EEecCCCeEEEeeCC-CCcceeeeeeecCCcCceEEEEE
Q 038568 262 ERER-DHRMVFAEALWG----H--TGALLCLINV--GDLL-ASGSADRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 262 d~~~-~~~~~~~~~~~~----~--~~~v~~~~~~--~~~l-~~~~~dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
++.. ...+........ . ......+.++ +++| ++....+.|.+|++. .....+.+..........+.+.+
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 9982 222222222111 1 1134455555 4444 445567899999994 32335555555544555899999
Q ss_pred eeCCCCCCCCeEEEEEc-CCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSG-SLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~-~~dg~v~~wd 357 (357)
+|+++ +|+++ ..++.|.+|+
T Consensus 300 s~~g~-------~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 300 SPDGR-------YLYVANQDSNTVSVFD 320 (345)
T ss_dssp -TTSS-------EEEEEETTTTEEEEEE
T ss_pred eCCCC-------EEEEEecCCCeEEEEE
Confidence 99998 55544 5777888763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=121.82 Aligned_cols=184 Identities=18% Similarity=0.259 Sum_probs=147.3
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
..+-..|.++.-+| .+.++|+.||.+++|....++.+..+.......++.+.|+.+| .+..+..||.+.+|...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--- 2281 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---
Confidence 34556778888888 8899999999999999998888887765666899999999988 68899999999999975
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
.++....+.|........|-. ..+++++ .++.+.+||..-......+. ..|.+.++++++.|+
T Consensus 2282 --------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2282 --------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred --------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce
Confidence 456667778888888888875 4566654 47889999987554444444 679999999999988
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++||.+|.|++||++.. +..+.++. +. ... ++++|+..|.++||+
T Consensus 2350 llisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~-------~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TRE-------YFVTGSSEGNIKIWR 2396 (2439)
T ss_pred EEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhh-------eeeccCcccceEEEE
Confidence 9999999999999999975 33443332 44 333 899999999999995
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-11 Score=101.23 Aligned_cols=208 Identities=9% Similarity=-0.007 Sum_probs=127.2
Q ss_pred CccceeEEEEe--cceEEEee---CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE-eecCC--eEEE
Q 038568 28 HHMIISCLAVH--NSLLYAAS---LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT-AHQDC--KIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~---~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~-~~~d~--~i~v 96 (357)
+...+.+.+|+ |+.|+..+ .+ .|.+|++ .+++... +.. ..+.+...+|+||+ |+. .+.+| .|.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-~~G~~~~-l~~---~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGAVRQ-VAS---FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC-CCCCeEE-ccC---CCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 56688999999 88887654 35 8999999 7765332 222 33345578999997 543 34444 5888
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCe--EEEEEcCc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRS--FKIWNASN 171 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~--i~iwd~~~ 171 (357)
||+.+++..... .+...+....|+| +.|+..+. ++. |.++|+.+
T Consensus 272 ~d~~tg~~~~lt-------------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 272 MDLASGQIRQVT-------------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EECCCCCEEEcc-------------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 998876532211 2234567788999 56665554 344 44456665
Q ss_pred chhhhhccccccccEEEEEEecCC-eEEEEeC-C--CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA-D--GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS 247 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (357)
++. ..+ ...........|+|+| +++..+. + ..|.+||+.. + . ...+.. ........|+|||+
T Consensus 321 g~~-~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~------g----~-~~~Lt~-~~~~~~p~~SpDG~ 386 (429)
T PRK03629 321 GAP-QRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT------G----G-VQVLTD-TFLDETPSIAPNGT 386 (429)
T ss_pred CCe-EEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC------C----C-eEEeCC-CCCCCCceECCCCC
Confidence 543 233 2233445678899999 4555443 3 3578888762 1 1 111211 11234678999999
Q ss_pred EEEEEecCCe---EEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 248 LLFSGGCDRW---IVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 248 ~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+|+.++.++. +.++++.... ...+.+|.+.+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence 9999887764 6677775332 233445677777777765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=120.93 Aligned_cols=185 Identities=19% Similarity=0.297 Sum_probs=141.4
Q ss_pred CceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
..|.++.-+|.. .+||+.||.+++|....++.+.+.++. + ...|+.+.|
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~----------------------------g-~s~vtr~~f 2259 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA----------------------------G-NSRVTRSRF 2259 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc----------------------------C-cchhhhhhh
Confidence 345556666654 899999999999999998887777663 3 378888888
Q ss_pred ec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEe---CCCeEEEEEcccccccccccccee
Q 038568 151 KQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGS---ADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 151 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
+. +.+..+..||.+.+|.+. .++.... ..|........|-.. .+++++ .++.+.+||... . ....
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~------~-~~~s 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLL------P-PMNS 2329 (2439)
T ss_pred cccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeeeh-hhhccccCCCCCcccchhccc------C-cccc
Confidence 88 888899999999999986 5555555 678888888888763 344443 478899999651 1 1122
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEee
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
.+. ..|.+.++++++-|....|++|+.+|.|++||++..+. +..+. . +. ..+++++|+..|.++||+
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql---~h~~~-----~--~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL---RHTFQ-----A--LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH---HHHhh-----h--hh-hhheeeccCcccceEEEE
Confidence 233 67999999999999999999999999999999986553 22222 1 22 345999999999999999
Q ss_pred CCCC
Q 038568 306 RGKE 309 (357)
Q Consensus 306 ~~~~ 309 (357)
+...
T Consensus 2397 ~s~~ 2400 (2439)
T KOG1064|consen 2397 LSEF 2400 (2439)
T ss_pred cccc
Confidence 9875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-12 Score=95.14 Aligned_cols=273 Identities=13% Similarity=0.207 Sum_probs=162.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc-----ccceecccc---------CCCCceEEEEEecCc----eE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS-----HVDTFSNDL---------SSSGSVKSITFHITK----IF 86 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~-----~~~~~~~~~---------~~~~~v~~l~~~~~~----l~ 86 (357)
..+.|+++.|. |.||++|..+ .|.+|.- +... ....|++.. .-...|..+.|..+. ++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer-~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFER-EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeec-ccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45679999999 9999999988 9999987 3322 222344410 123568899998653 78
Q ss_pred EeecCCeEEEEecCCccceeeeee------cCcc-cc------ceeeeecCCCeEEEeccccccc-ccccccEEEEEEec
Q 038568 87 TAHQDCKIRVWKITASRQHQLVST------LPTV-KD------RLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ 152 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~------~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 152 (357)
..+.|.+|++|.+...... .+.. +... .+ .+....-......+...+.+++ ..|.-.|.++.|+.
T Consensus 104 lstNdktiKlWKiyeknlk-~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLK-VVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EecCCceeeeeeeecccch-hhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 8889999999998754221 1110 0000 00 0011111122233333344444 68999999999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchh---hhhcc----ccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccccccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKC---LESVN----KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
...+..+.|=.|.+|++.-... +..+. ......|++..|+|.. .+.-.+..|.|++-|+|..........
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 4455555677899998764221 11110 1123457888999976 577788899999999983221111000
Q ss_pred ------ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC------------ccce--
Q 038568 223 ------RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH------------TGAL-- 282 (357)
Q Consensus 223 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~v-- 282 (357)
.+.....+.+-...|..+.|+++|+++++-+. -++++||.+..+.+ +.+..-| ...|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p--ikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP--IKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC--ceeechHHHHHHHHHhhhhccceee
Confidence 00111112233456888999999999988654 46999999876543 2222212 1122
Q ss_pred -EEEeecCc--eEEEecCCCeEEEee
Q 038568 283 -LCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 283 -~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
..+.|+|+ .+++|+..+..-++-
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eEEEEecCCcccccccccccceeeec
Confidence 34566665 777777666666664
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=99.67 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=107.1
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCCeEEEEEcc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADGRIRVWERS 212 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~i~d~~ 212 (357)
.+...+.+.+|+| +.|+..+.+ ..|.+||+.+++... + ........+..|+||| .|+ +.+.++...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4556788999999 667666543 459999998876532 2 2234456688999999 454 56778887777664
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEec--ccCCceeeeeeccCCccceEEEeecC
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWER--ERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
. .......+..+........|+|||+.|+..+. +|...+|.+ .++.. ..+ ...+....-..+++++
T Consensus 271 ~---------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-t~~g~~~~~~~~SpDG 339 (427)
T PRK02889 271 A---------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV-TFTGSYNTSPRISPDG 339 (427)
T ss_pred C---------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE-ecCCCCcCceEECCCC
Confidence 1 11112333344445567889999998876654 455666654 33332 111 1222211112334445
Q ss_pred ceEEEecCCC---eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 290 DLLASGSADR---TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 290 ~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++|+..+.++ .|.+||+.+++.. .+.. ........|+|+++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVT----ALTD-TTRDESPSFAPNGR 383 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeE----EccC-CCCccCceECCCCC
Confidence 5776655543 6999999886422 1221 12346789999998
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=106.18 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=181.9
Q ss_pred cCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc------cceeccccCCCCceEEEEEecCceEEeecC
Q 038568 21 KIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH------VDTFSNDLSSSGSVKSITFHITKIFTAHQD 91 (357)
Q Consensus 21 ~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d 91 (357)
..+.| |...|.+++-- .+-+++++.| +|++|.+...+.. .-+++. |+.+|.++.|..+.-..++.|
T Consensus 729 ~nf~G--H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a---Hkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTG--HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA---HKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred ecccC--cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh---ccCcccceeeeeccceeeecc
Confidence 34456 99999998654 7889999999 9999999333322 335555 999999999998874555668
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeE-EEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLM-YSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l-~~~~~dg~i~iwd~ 169 (357)
|-|.+||.--++....+...+. .+..+.|.++.-.. ..+ +-++...+|+++|.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk-------------------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPK-------------------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred CcceeecccccchhHhhhcCcc-------------------------cCCCceeEecccCcchheeeeccchhhheeeec
Confidence 9999999877765443332221 02233455554323 344 44478899999999
Q ss_pred Ccchhhhhcc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 170 SNYKCLESVN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 170 ~~~~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+.++....+. ......+.++++.+.| +++++-.+|.|.+.|.+ .+..+..++........++- |
T Consensus 859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR----------~G~vINswrpmecdllqlaa-p 927 (1034)
T KOG4190|consen 859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR----------NGKVINSWRPMECDLLQLAA-P 927 (1034)
T ss_pred ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC----------CCceeccCCcccchhhhhcC-c
Confidence 9877655552 2344668899999988 69999999999999998 34444444444444444443 4
Q ss_pred CCCEEEEEecCCeEEE-EecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC-cceeeeeee--cC
Q 038568 245 DGSLLFSGGCDRWIVV-WERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE-NCYRCMAFL--EG 320 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~--~~ 320 (357)
..+.|+....|.++.+ |-...+.... .......+..-+.--+-.|++....+.+.+|.-... .....+..+ ..
T Consensus 928 sdq~L~~saldHslaVnWhaldgimh~---q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~ 1004 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWHALDGIMHL---QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDE 1004 (1034)
T ss_pred hhHHHHhhcccceeEeeehhcCCeeee---ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccc
Confidence 5567777778888888 8766554221 111122222222233446677777777888743211 000111111 22
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+..++++.-|-.. -+..|...|.|.+
T Consensus 1005 f~G~lTala~LPLN~-------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1005 FPGTLTALAPLPLNC-------AFLAGNEHGAIAL 1032 (1034)
T ss_pred cCCccceeeeccccc-------hhhccCCCCceee
Confidence 345678888888776 6777888888875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-10 Score=97.68 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=108.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +... .+.+.. +...+...+|+|++ |+.+..+ ..|.+||+.+++... +.
T Consensus 171 ~l~~~d~-~g~~-~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-------------- 230 (417)
T TIGR02800 171 ELQVADY-DGAN-PQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-------------- 230 (417)
T ss_pred eEEEEcC-CCCC-CEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee--------------
Confidence 7888887 5433 444544 67788999999997 6555433 479999998765322 11
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 197 (357)
.+...+.+..|+| +.|+ +.+.++ .|.+||+.+++... + ..+........|+|++ +|
T Consensus 231 ----------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 231 ----------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-L-TNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred ----------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-C-CCCCCCCCCEEECCCCCEE
Confidence 2334455678888 4454 445444 58889988765432 3 2333444567899998 45
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCC
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDH 267 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~ 267 (357)
+..+ .++ .|.++|+. . .. ...+..+........|+|++++++.++.++ .|.+||+.++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~------~----~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD------G----GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEEECCCCCceEEEEECC------C----CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 5444 334 46666665 1 11 122333445667889999999999888776 78999988754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-10 Score=93.00 Aligned_cols=273 Identities=10% Similarity=0.131 Sum_probs=158.5
Q ss_pred ccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE-----eecC-----CeE
Q 038568 29 HMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT-----AHQD-----CKI 94 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~-----~~~d-----~~i 94 (357)
..+++..+++ |+++|.+..+.++|++. .....+.+.. .. .+.++.|+|-+ |.+ ...+ ..+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~-~~~~~~lt~~----~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEI-ATLKVVLCVE----LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEc-cCCcEEEEec----cc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 3446667777 77777766669999998 6665444443 23 89999999965 222 1122 346
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcch
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 173 (357)
++|+++++.....+.. ..... ++..|+. ..+++=-..+.+.+|++...+
T Consensus 108 ~v~~vet~~~~s~~q~-----------------------------k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQK-----------------------------KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred eeeeeccceehhheeh-----------------------------hhhcC-cccccccchhhhhhhhcceEEEEecCCcc
Confidence 7999887432222211 11111 4556666 444444445667777776633
Q ss_pred hhhhccccccccEEEEEEecCC---eEEE-----EeCCCeEEEEEccccccc----------------------------
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG---VVYT-----GSADGRIRVWERSVVDHN---------------------------- 217 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~---~l~~-----~~~d~~i~i~d~~~~~~~---------------------------- 217 (357)
.+.. .-|...++.+.++|.. .+++ .+.-+.|++|........
T Consensus 158 ~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvL 235 (566)
T KOG2315|consen 158 TIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVL 235 (566)
T ss_pred ceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEE
Confidence 3322 2345566666666653 1221 233445666655411100
Q ss_pred ------ccc-----cc-------ceeeeeEeeccccceeEEEEecCCCEEEE--EecCCeEEEEecccCCceeeeeeccC
Q 038568 218 ------KER-----KS-------RHMLVTTLVKHRSTVNALALNGDGSLLFS--GGCDRWIVVWERERDHRMVFAEALWG 277 (357)
Q Consensus 218 ------~~~-----~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (357)
+++ +. .+.....-....++|.++.|+|+++.+++ |-.-..+.|||++.. ++..+
T Consensus 236 astdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df-- 309 (566)
T KOG2315|consen 236 ASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDF-- 309 (566)
T ss_pred EEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeC--
Confidence 000 00 00011111123689999999999986654 445778999999844 22222
Q ss_pred CccceEEEeecCc--eEEEecC---CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC---
Q 038568 278 HTGALLCLINVGD--LLASGSA---DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL--- 349 (357)
Q Consensus 278 ~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~--- 349 (357)
..++-.++-|+|. +|+.+|- -|.+-+||+.+. +++..+.... -+-+.|+|||+ +|+|+..
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~~--tt~~eW~PdGe-------~flTATTaPR 377 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAAN--TTVFEWSPDGE-------YFLTATTAPR 377 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccCC--ceEEEEcCCCc-------EEEEEecccc
Confidence 3455566666654 6666554 489999999985 6666666543 35689999998 8877763
Q ss_pred ---CCeEEecC
Q 038568 350 ---NGEIKVWD 357 (357)
Q Consensus 350 ---dg~v~~wd 357 (357)
|+.++||+
T Consensus 378 lrvdNg~Kiwh 388 (566)
T KOG2315|consen 378 LRVDNGIKIWH 388 (566)
T ss_pred EEecCCeEEEE
Confidence 67788884
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-10 Score=94.04 Aligned_cols=262 Identities=12% Similarity=0.083 Sum_probs=154.6
Q ss_pred EEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 36 AVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 36 ~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
...++.+++++.+ .|..+|. .+++.+-.+.. ............+.++.++.++.+..+|..+++..-.....
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~---~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--- 134 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDA-ETGKRLWRVDL---DERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--- 134 (377)
T ss_pred EEECCEEEEECCCCeEEEEEc-cCCcEeeeecC---CCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC---
Confidence 3347888888888 9999999 88888776654 22212233344445888889999999999888754433211
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccE-----EE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAV-----NA 188 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~ 188 (357)
..+. ......+.++.++.+|.|..||.++++.+..+. ...... .+
T Consensus 135 ----------------------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~s 185 (377)
T TIGR03300 135 ----------------------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSAS 185 (377)
T ss_pred ----------------------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCC
Confidence 1111 111223667778889999999999998877662 221111 11
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee-ccc--cceeEEEEec--CCCEEEEEecCCeEEEEec
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHR--STVNALALNG--DGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~ 263 (357)
... .++.++.+..++.+..+|.++++. ..+...... +.. .....+.-+| .+..+++++.+|.++.||.
T Consensus 186 p~~-~~~~v~~~~~~g~v~ald~~tG~~------~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 186 PVI-ADGGVLVGFAGGKLVALDLQTGQP------LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CEE-ECCEEEEECCCCEEEEEEccCCCE------eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 111 245778888899999999873221 111000000 000 0000010011 2457888888999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
++++...... . .........++.++.++.||.+..+|..+++ .+-.... ......+... .+.
T Consensus 259 ~tG~~~W~~~-~----~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~------- 321 (377)
T TIGR03300 259 RSGRVLWKRD-A----SSYQGPAVDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGG------- 321 (377)
T ss_pred CCCcEEEeec-c----CCccCceEeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECC-------
Confidence 9887543222 1 1122334556788888899999999998874 2222211 1111122222 233
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
.|++++.||.|.++|
T Consensus 322 ~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 322 YLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEEeCCCEEEEEE
Confidence 778888899988875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=93.11 Aligned_cols=255 Identities=12% Similarity=0.170 Sum_probs=160.5
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
...-|.++.|...+ |++|..+|.|.++.-..... ......++......... .-..-...|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL---------------kSleieEKin 88 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL---------------KSLEIEEKIN 88 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh---------------hhhhhhhhhh
Confidence 45678899998776 99999999999997543321 11111111111000000 0012345678
Q ss_pred EEEEec----CeEEEEecCCeEEEEEcCcchh-----------------------------------hhhccccccccEE
Q 038568 147 DLVVKQ----GLMYSVSWDRSFKIWNASNYKC-----------------------------------LESVNKAHEDAVN 187 (357)
Q Consensus 147 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~ 187 (357)
.+.|.+ ..++..+.|.+|++|.+..... .+.+..+|.-.|+
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN 168 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence 888877 6777888899999998753211 1112356778899
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-----ccceeEEEEec-CCCEEEEEecCCeEEEE
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-----RSTVNALALNG-DGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 261 (357)
++.++.|+..+....|=.|.+|++...+ ..... ..++.+ ..-|++..|+| ..+.++-.+..|+|++-
T Consensus 169 SIS~NsD~Et~lSADdLRINLWnlei~d------~sFnI-VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 169 SISVNSDKETFLSADDLRINLWNLEIID------QSFNI-VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeeecCccceEeeccceeeeeccccccC------CceeE-EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 9999999876666788899999987322 12222 222222 34588999999 45678888889999999
Q ss_pred ecccCCcee----eeee---------ccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcC---
Q 038568 262 ERERDHRMV----FAEA---------LWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEK--- 323 (357)
Q Consensus 262 d~~~~~~~~----~~~~---------~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--- 323 (357)
|++...... .... +..--..|..+.|+. +++++-.. -+|++||+.... +++.+.+.|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--KPVETYPVHEYLRS 318 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--CcceEEeehHhHHH
Confidence 998432110 0100 001122455566654 47776553 579999996542 44555555531
Q ss_pred ---------c---eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 ---------P---VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ---------~---v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. -..++|+.++. +++|||....+++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~-------~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDS-------YVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcc-------eEecccccceEEEec
Confidence 2 24567888887 999999999999875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-10 Score=97.94 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=109.9
Q ss_pred cccccEEEEEEec--CeEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCCe--EEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADGR--IRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~--i~i~d 210 (357)
.+...+.+..|+| +.|+..+. +..|.+||+.+++.. .+ ......+....|+|+| .| ++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5667899999999 66666653 468999999887653 23 3455567788999999 44 45555555 66667
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-C--CeEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-D--RWIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . . ....+..+........|+|||+.|+..+. + ..|+++|+..+... .+. .+...+....|
T Consensus 277 ~~------~----~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt---~~~~~~~~~~~ 341 (435)
T PRK05137 277 LR------S----G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS---FGGGRYSTPVW 341 (435)
T ss_pred CC------C----C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee---cCCCcccCeEE
Confidence 65 1 1 12334445555677899999998887664 3 36888888765432 221 12333444556
Q ss_pred cCc--eEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGD--LLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~--~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+|+ .|+....+ ..|.+||+..+. .+. +. ....+....|+||++
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~---lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERI---LT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCc-eEe---cc-CCCCCCCCeECCCCC
Confidence 554 66554432 468888886542 121 21 123467889999998
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=96.10 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=182.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc---------------ccceeccccCCCCceEEEEEecCc--eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS---------------HVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~---------------~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
......|++|+ ..++|+|+.| .+++..+ .+.. .-+++.+ |.+.|.-+.|+.+. |-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl-~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKL-GTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEc-cccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence 56778999999 8999999999 9999988 4421 1245566 99999999999765 889
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
...+|.|.||-+-.+......... ...+.|.+++|+. ..++....||.|.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNn----------------------------RnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINN----------------------------RNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhC----------------------------cCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 999999999999887654443321 4456788999988 7788888888887
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeee----eEeeccccceeEE
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLV----TTLVKHRSTVNAL 240 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~ 240 (357)
+=.+...+.-.. .-.......+.|++|.. ++.+-..|.+.+||.+..-..+ ....+. ..+......+..+
T Consensus 141 VGsvdGNRIwgK--eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K---l~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 141 VGSVDGNRIWGK--ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK---LEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred EEeeccceecch--hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHh---hhhceEEeeeeeecCCCccccce
Confidence 766543322211 11222344788999984 6777788999999975211100 000110 0111111224455
Q ss_pred EEe--------cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC---------CeE
Q 038568 241 ALN--------GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD---------RTV 301 (357)
Q Consensus 241 ~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d---------g~i 301 (357)
.|. |+...|+++..+|.+.+..-.+...+..+.+ ...+....|+++ .|+.++.+ +.|
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v 291 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKV 291 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceE
Confidence 553 4777999999999999877665544433322 245666777766 77777754 356
Q ss_pred EEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 302 RIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 302 ~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+|..-. +.+..++.....|++++|-..+- .++-+ .|+.|.+
T Consensus 292 ~Fysp~G----~i~gtlkvpg~~It~lsWEg~gL-------riA~A-vdsfiyf 333 (1189)
T KOG2041|consen 292 HFYSPYG----HIVGTLKVPGSCITGLSWEGTGL-------RIAIA-VDSFIYF 333 (1189)
T ss_pred EEeccch----hheEEEecCCceeeeeEEcCCce-------EEEEE-ecceEEE
Confidence 6665442 55677777888999999987764 55544 4666543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-10 Score=97.04 Aligned_cols=174 Identities=14% Similarity=0.047 Sum_probs=106.1
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~--~i~i~d 210 (357)
.+...+.+..|+| +.|+..+.+ ..|.+||+.+++.... ........+..|+|+| ++ ++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4556788999999 677776643 4699999987764322 2233445578999999 34 4445555 588888
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCe--EEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRW--IVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . .. ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.. .+ ...+ ......+|
T Consensus 279 ~~------~----g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l-t~~g--~~~~~~~~ 343 (433)
T PRK04922 279 LG------S----RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL-TFQG--NYNARASV 343 (433)
T ss_pred CC------C----CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee-ecCC--CCccCEEE
Confidence 86 1 11 2233344444567899999998887664 444 667777665422 11 1222 22233455
Q ss_pred c--CceEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 V--GDLLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~--~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+ +++|+..+.+ ..|.+||+.+++. + .+. +........|+|+++
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~---~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV-R---TLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe-E---ECC-CCCCCCCceECCCCC
Confidence 5 4466654433 2699999987632 2 222 222345678999998
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=98.41 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=165.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
......|++|+.+. +++|+.||.++|-.+.+...-.....+... ..-.-.+.+.+|...|.-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~---------------snLsmNQtLeGH~~sV~vv 77 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA---------------SNLSMNQTLEGHNASVMVV 77 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc---------------cccchhhhhccCcceEEEE
Confidence 56678999999654 999999999999998765422111111000 0011124567999999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhc-cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESV-NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
.|+. ..|-+...+|-|.+|-+-.+.-.... .....+.|.+++|+.+| ++.....||.|.+=.+. ...--+
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd------GNRIwg 151 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD------GNRIWG 151 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec------cceecc
Confidence 9999 77888889999999999887654443 34567789999999999 69899999999877665 111111
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee--------eeeccCCccceEEEeec--------
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF--------AEALWGHTGALLCLINV-------- 288 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~-------- 288 (357)
..++ ..-...+.|++|.+.++.+-.+|.+.+||.+..-.... ...+......+..+.|.
T Consensus 152 ---KeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 152 ---KELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred ---hhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence 1111 12234788999999999999999999999864321111 01111111123333332
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
|+ .|+.+-.+|.+.+..-.+.. .++..-.+ -.|.++.|+++|. +|+.+|.|.
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~--~Pvv~dtg--m~~vgakWnh~G~-------vLAvcG~~~ 280 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDP--EPVVVDTG--MKIVGAKWNHNGA-------VLAVCGNDS 280 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCC--CCeEEecc--cEeecceecCCCc-------EEEEccCcc
Confidence 23 89999999999998776653 22322222 5688999999998 999988663
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-10 Score=97.07 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=173.6
Q ss_pred CCCCccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC-----------c---eEEee
Q 038568 25 PDPHHMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-----------K---IFTAH 89 (357)
Q Consensus 25 g~~h~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~---l~~~~ 89 (357)
|-+|...-.++.|+ +.+||-|+...|.+-|. .+.+.++.+.. |...|+.+.|.|- . |+++.
T Consensus 11 G~l~~sN~~A~Dw~~~GLiAygshslV~VVDs-~s~q~iqsie~---h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 11 GPLSRSNRNAADWSPSGLIAYGSHSLVSVVDS-RSLQLIQSIEL---HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred CCCCcccccccccCccceEEEecCceEEEEeh-hhhhhhhcccc---CccceeEEEeccCCCchhccCccccceeEEecc
Confidence 44455567888999 88999998888899999 88899999998 9999999999862 1 67778
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec------CeEEEEecCCe
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ------GLMYSVSWDRS 163 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~ 163 (357)
..|.|.+||+........+. .|.+++.+++|-+ ..|++-....+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLS------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhc------------------------------CCCcchhheeeeeccCcchheeEEecCCcE
Confidence 88999999998776544433 6778899999987 56777788889
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc------
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS------ 235 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------ 235 (357)
+.+|+..+|+..... ........|+.+.|-. .+..-+..|.+.+-+.-...+... ..+..+.-..|..
T Consensus 137 lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~---pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKY-DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV---PGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEEEEccCCceeecc-ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC---CceeEEEecCccchhhhhh
Confidence 999999999999888 5556677789998854 366667778877776542222111 1111211111111
Q ss_pred -------------------ceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE
Q 038568 236 -------------------TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS 294 (357)
Q Consensus 236 -------------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 294 (357)
....++|+|.-+.++-......+.++|++-...+..+... ........+-++++ .|++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-r~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-cCCcceeEeccCCCcceEEE
Confidence 0123667886655555566788999999877655444332 22334455555554 8999
Q ss_pred ecCCCeEEEeeCCC
Q 038568 295 GSADRTVRIWQRGK 308 (357)
Q Consensus 295 ~~~dg~i~vw~~~~ 308 (357)
...||.+.+|--+.
T Consensus 292 lH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRKE 305 (1062)
T ss_pred EecCCeEEEEEeec
Confidence 99999999997654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-11 Score=88.73 Aligned_cols=234 Identities=16% Similarity=0.227 Sum_probs=137.2
Q ss_pred eeEEEEe-cceEEEeeCC-ceEEEeccCCccc------------cceeccccCCCCceEEEEEecCceEEeecCCeEEEE
Q 038568 32 ISCLAVH-NSLLYAASLN-EINVFDLISDYSH------------VDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVW 97 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vw 97 (357)
|+.+.+. ...|+++..+ .+..... -.+.. .+.+.. ....++...+....++++++..||.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~-~r~~~~~~~~rt~~i~~~~~~a~-~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGK-GRGRCISLWERDDGIDPFKVLAK-NSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhhheeecccchhheeeecc-ceEEEechhhcccCcCceeeeec-cCCCCCcccccccCCceEecCCCceEEEE
Confidence 6666676 6667777666 6655544 22222 222221 00122223333333459999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEe-----cCCeEEEEEcCc
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVS-----WDRSFKIWNASN 171 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-----~dg~i~iwd~~~ 171 (357)
+.+... +.....+. .|.+.......+. +.+.++. .-+..+.|+++.
T Consensus 117 s~~~~~--~~~~~i~~--------------------------~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 117 STDKDL--ALMSRIPS--------------------------IHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred echHHH--hhhhhccc--------------------------ccccccccceeecccEEecCCcceEeeccceeeecccc
Confidence 987521 11111110 1222111111122 2222222 123455666654
Q ss_pred chhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCE
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSL 248 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 248 (357)
.+.+..- ......|.+++-+|.. .+++|+.||.+.+||.+. ...+...+..|+.+++.+.|+| ++..
T Consensus 169 ~~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn---------~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 169 IKTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN---------VAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ccccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEccc---------ccchHHHHHHhhhhhhheeccCCCchh
Confidence 3322222 1223348899988866 588999999999999982 2445666788999999999999 6779
Q ss_pred EEEEecCCeEEEEecccCCc---------------------eeeeeeccCCccceEEEeecCceEEEecCCCeEEEee
Q 038568 249 LFSGGCDRWIVVWERERDHR---------------------MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
|+++++||.+.-||..+.-. +.....+......|..+...+..|++|++-+.|++++
T Consensus 239 Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999999874210 0000111122334566666677888988888888865
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-08 Score=80.68 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=145.4
Q ss_pred ceeEEEEe--cceEEEeeC----C-ceEEEeccCCc----cccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEE
Q 038568 31 IISCLAVH--NSLLYAASL----N-EINVFDLISDY----SHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~----d-~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~v 96 (357)
....++++ +++|.+... + .|..|++ ... +.+..... .......++++|++ |+++ -.+|.+.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i-~~~~g~L~~~~~~~~---~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI-DPDTGTLTLLNSVPS---GGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-ETTTTEEEEEEEEEE---SSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEE-CCCcceeEEeeeecc---CCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 34557776 777777765 4 8889988 442 22333332 44566689999887 5544 46899999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~ 173 (357)
+++.....+............ ....-........++.++| +++++.. ....|.+|++....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~----------------g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGS----------------GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEE----------------ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEccCCcccceeeeecccCCC----------------CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 999874322222110000000 0000002234567889999 5555543 34579999987654
Q ss_pred h-h---hhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeec------cccceeEEE
Q 038568 174 C-L---ESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK------HRSTVNALA 241 (357)
Q Consensus 174 ~-~---~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 241 (357)
. + ..+..........+.|+|++ + .++.-.++.|.++++.. .......+..... .......|+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP------SDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET------TTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc------cCCceeEEEEeeeccccccccCCceeEE
Confidence 1 2 22223556778999999998 3 55666789999999871 1112222222221 112577899
Q ss_pred EecCCCEEEEEe-cCCeEEEEecc-cCCceeeeeeccCCccceEEEeec--CceEEEe-cCCCeEEEeeCC
Q 038568 242 LNGDGSLLFSGG-CDRWIVVWERE-RDHRMVFAEALWGHTGALLCLINV--GDLLASG-SADRTVRIWQRG 307 (357)
Q Consensus 242 ~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~vw~~~ 307 (357)
++|||++|+++. .++.|.+|+++ ....+...............+.++ +++|+++ ..++.|.+|++.
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999888765 46789999994 323344444443323335666664 4566555 467899999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-10 Score=91.85 Aligned_cols=277 Identities=12% Similarity=0.131 Sum_probs=163.3
Q ss_pred ceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEE
Q 038568 31 IISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~v 96 (357)
.+.++.|+ |++|.|=- .. .+.+|++ +++.....++. ....=.+..|+.|. |++--..+.+.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v-et~~~~s~~q~---k~Q~~W~~qfs~dEsl~arlv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV-ETGVQRSQIQK---KMQNGWVPQFSIDESLAARLVSNEVQF 150 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeee-ccceehhheeh---hhhcCcccccccchhhhhhhhcceEEE
Confidence 57788888 77776621 23 6789999 77555555553 22222688999886 555455677999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccc-------ccc-----cc---------ccccEEEEEEec---
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK-------RLW-----LE---------HWDAVSDLVVKQ--- 152 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~---------~~~~v~~~~~~~--- 152 (357)
|++.+.+.....-..+...............+.+...+. +++ .. ....-..+.|++
T Consensus 151 ~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 151 YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 998764432222112222111111111111111111000 000 00 011223466666
Q ss_pred CeEEEEec--C---------CeEEEEEcCcchhhhhccccccccEEEEEEecCCe---EEEEeCCCeEEEEEcccccccc
Q 038568 153 GLMYSVSW--D---------RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV---VYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 153 ~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.+|+.++. | .++++.+++...+.-.+ ...++|.++.|+|+++ ++-|..-..+.+||++
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr------ 302 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR------ 302 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC------
Confidence 34433332 3 36888888744444443 6689999999999993 5667778899999987
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
..++..+ ..++=+++-|+|.|++++.++- -|.|-|||..+.+ .+..+..-...+...+.+|++|+|+
T Consensus 303 -----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 303 -----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred -----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---hccccccCCceEEEEcCCCcEEEEE
Confidence 4444444 4577789999999999988876 4789999999865 3444444444444445555577777
Q ss_pred cC------CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 296 SA------DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 296 ~~------dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.. |+.++||++.. ..+..-.- .+....+.|-|-.
T Consensus 373 TTaPRlrvdNg~KiwhytG----~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTG----SLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred eccccEEecCCeEEEEecC----ceeehhhh-hHhHhheeeeecC
Confidence 64 78899999874 22322211 1146677777543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=101.14 Aligned_cols=208 Identities=15% Similarity=0.227 Sum_probs=136.1
Q ss_pred CCCCceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+|...|..++--.+ .+++++.|+++++|.++....-.... ...-++..|..+|.+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-----------------------aCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-----------------------ACQFTYQAHKKPIHD 789 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-----------------------eeeeEhhhccCcccc
Confidence 38888888866544 39999999999999987532111000 000233589999999
Q ss_pred EEEecCeEEEEecCCeEEEEEcCcchhhhhccc-cccccEEEEEEecC--C-eE-EEEeCCCeEEEEEcccccccccccc
Q 038568 148 LVVKQGLMYSVSWDRSFKIWNASNYKCLESVNK-AHEDAVNAVVVSDN--G-VV-YTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 148 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~--~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+.|....-..++.||.|.+||.--++.+..... ...+.+..+..-++ . .+ +.++...+|+++|.+ ...-
T Consensus 790 igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR------sce~ 863 (1034)
T KOG4190|consen 790 IGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR------SCEW 863 (1034)
T ss_pred eeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc------cccc
Confidence 999984434455688999999988887775421 22223333333333 2 34 444778999999988 2211
Q ss_pred ceee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee-cCceEEEecCCCe
Q 038568 223 RHML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN-VGDLLASGSADRT 300 (357)
Q Consensus 223 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~ 300 (357)
..+. +....+....+.+++..+.|+.++++-.+|.|.+.|.+++. .+............++- +...|+....|.+
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~---vINswrpmecdllqlaapsdq~L~~saldHs 940 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK---VINSWRPMECDLLQLAAPSDQALAQSALDHS 940 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc---eeccCCcccchhhhhcCchhHHHHhhcccce
Confidence 1111 11112334568899999999999999999999999999987 34444444444444443 3447777788888
Q ss_pred EEE-eeCCCC
Q 038568 301 VRI-WQRGKE 309 (357)
Q Consensus 301 i~v-w~~~~~ 309 (357)
+.+ |....+
T Consensus 941 laVnWhaldg 950 (1034)
T KOG4190|consen 941 LAVNWHALDG 950 (1034)
T ss_pred eEeeehhcCC
Confidence 888 876554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-09 Score=91.78 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=130.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +... .+.+.. +...+....|+|++ |+..+.+ ..|.+|++.+++... +.
T Consensus 180 ~l~~~d~-~g~~-~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-------------- 239 (430)
T PRK00178 180 TLQRSDY-DGAR-AVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-------------- 239 (430)
T ss_pred EEEEECC-CCCC-ceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc--------------
Confidence 5888888 5544 444544 77889999999997 6555433 368889998765422 21
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 197 (357)
...+.+....|+| +.|+ +.+.+| .|.+||+.+++.. .+ ..+........|+|++ .+
T Consensus 240 ----------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 240 ----------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV-TNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred ----------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ec-ccCCCCcCCeEECCCCCEE
Confidence 1122344678888 5554 555555 5888899876543 33 2344455677899998 44
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC-C--eEEEEecccCCceee
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-R--WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~ 271 (357)
+..+ .++ .|+++|+. .+. ...+ ... ........|+|+|+.|+..+.+ + .|.++|+.+++.. .
T Consensus 302 ~f~s~~~g~~~iy~~d~~------~g~--~~~l-t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~ 369 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVN------GGR--AERV-TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I 369 (430)
T ss_pred EEEECCCCCceEEEEECC------CCC--EEEe-ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-E
Confidence 4443 344 46666654 111 1111 111 1223457899999988877653 3 5888999876532 2
Q ss_pred eeeccCCccceEEEeecCceEEEec-CC--CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGDLLASGS-AD--RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~l~~~~-~d--g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+... ....-..++.+++.++..+ .+ ..|.++++... ....+..+.+.+...+|+|-
T Consensus 370 lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 370 LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCCCccCCC
Confidence 2211 1111123444445554433 33 34666677543 12233344556777778764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-08 Score=94.81 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=170.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEE----eccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVF----DLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
..+.|.++.|- ...++.+..+ .|.+. +. .. ..+..... -...|.+++|+||. |+..+.++++.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-~~-~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-DE-DEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-CC-ceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 45678888887 5556666655 66666 33 22 23333333 67799999999998 77777788877754
Q ss_pred cCCccceeeeeecCc--cccceeeeecCCCeEEEecc-----------------cccccccccccEEEEEEec--CeEEE
Q 038568 99 ITASRQHQLVSTLPT--VKDRLIRSVLPNNYVTVRRH-----------------KKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
- +-+.+......+. .........+..+...+.+. +...+. ..+.-..++|-. .++|+
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 2 1211111111000 00111111111111111100 011122 444667788888 77777
Q ss_pred Eec---C---CeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeC----CCeEEEEEccccccccccccceeee
Q 038568 158 VSW---D---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA----DGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 158 ~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
.+. . ..++||+-+ |+...+- ....+--.+++|.|.|.++++.. ...|.+|.-+ +-..++..
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-------GLrhgeF~ 297 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-------GLRHGEFT 297 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-------CcEeeeEe
Confidence 664 2 479999954 5544433 34444456789999996555443 3567777643 11122222
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc-CCccceEEEeecCc---eEEEecCCCeEEE
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW-GHTGALLCLINVGD---LLASGSADRTVRI 303 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~l~~~~~dg~i~v 303 (357)
..+......|..+.|++|+..|+.-..|. |.+|-..+.. ....+.+. .....+..+.|++. .|.....+|.+..
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 22334567899999999999999987666 9999887543 22222222 22233444778775 5555555555544
Q ss_pred eeC----CCCc-----------------------------ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 304 WQR----GKEN-----------------------------CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 304 w~~----~~~~-----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+++ ..+. ++-....+. -..+|.+++|+++.. .+++-..|
T Consensus 376 ~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-------~~avl~~d 447 (928)
T PF04762_consen 376 YDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-------RFAVLTSD 447 (928)
T ss_pred EEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-------eEEEEECC
Confidence 432 1110 000111121 346899999999987 68888889
Q ss_pred CeEEecC
Q 038568 351 GEIKVWD 357 (357)
Q Consensus 351 g~v~~wd 357 (357)
|.|.+|+
T Consensus 448 ~~l~~~~ 454 (928)
T PF04762_consen 448 GSLSIYE 454 (928)
T ss_pred CCEEEEE
Confidence 9988873
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=92.86 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=126.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec-CC--eEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-DC--KIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +.... +.+.. ....+.+..|+||+ |+..+. ++ .|.+||+.+++.. .+...
T Consensus 199 ~l~i~d~-dG~~~-~~l~~---~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~------------ 260 (448)
T PRK04792 199 QLMIADY-DGYNE-QMLLR---SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSF------------ 260 (448)
T ss_pred EEEEEeC-CCCCc-eEeec---CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCC------------
Confidence 5667777 54333 44444 67789999999997 554433 33 5888888776532 22211
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
........|+| +.|+ +.+.+|. |.++|+.+++.. .+ ..+........|+||+. +
T Consensus 261 ------------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l-t~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 261 ------------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RI-TRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred ------------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC-ccCCCCccceEECCCCCEE
Confidence 12233568888 5454 5566665 777888776543 33 23444567789999994 4
Q ss_pred E-EEeCCCe--EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceee
Q 038568 198 Y-TGSADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~ 271 (357)
+ +...++. |.++|+. .+ ....+ ... .......+|+|||++|+..+. ++ .|.++|+.++... .
T Consensus 321 ~f~s~~~g~~~Iy~~dl~------~g--~~~~L-t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~ 388 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLA------SG--KVSRL-TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V 388 (448)
T ss_pred EEEECCCCCceEEEEECC------CC--CEEEE-ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-E
Confidence 4 3433444 5555554 11 11111 112 222345789999998877655 33 4666777766532 2
Q ss_pred eeeccCCccceEEEeecCceEE-EecCCC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGDLLA-SGSADR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~l~-~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+.. .....-..++.+++.|+ +...++ .+++++.+. .....+..+.+.+...+|+|-
T Consensus 389 lt~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 389 LTS--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 111 11111123344444444 444444 366777643 233444455566777888773
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=84.41 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=118.6
Q ss_pred ceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc--ccEEEEEE
Q 038568 74 SVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW--DAVSDLVV 150 (357)
Q Consensus 74 ~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~ 150 (357)
.|+.+.+..+. |+++..++.+.......+........-.... ...++..|. ++-..+..
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~------------------~~~~~a~~sep~p~~~~s~ 99 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGID------------------PFKVLAKNSEIDPNDACTM 99 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcC------------------ceeeeeccCCCCCcccccc
Confidence 36677777666 8888888877776654432221111100000 000111111 22223333
Q ss_pred ecCeEEEEecCCeEEEEEcCcchhhh-hccccccccEEEEEEecCCeEEEEeC------CCeEEEEEccccccccccccc
Q 038568 151 KQGLMYSVSWDRSFKIWNASNYKCLE-SVNKAHEDAVNAVVVSDNGVVYTGSA------DGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 151 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..+.++++..||.+.+++.+.-..+. .+...|.+ -.+.++...+.++.... -+..+.|+++ +.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~---------p~ 169 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLD---------PI 169 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccc---------cc
Confidence 33789999999999999987522111 11011111 11222222332333322 3345566665 11
Q ss_pred eeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCC
Q 038568 224 HMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADR 299 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg 299 (357)
........ ....|.+++-+| +.+.+++|+.||.+-+||.+.... +...+..|+.++..+.|+|+ .|+++++||
T Consensus 170 ~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 170 KTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 11111112 223489999999 556888899999999999997743 45567789999999999876 999999999
Q ss_pred eEEEeeCCC
Q 038568 300 TVRIWQRGK 308 (357)
Q Consensus 300 ~i~vw~~~~ 308 (357)
.+..||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-09 Score=92.21 Aligned_cols=182 Identities=13% Similarity=0.028 Sum_probs=110.5
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~--~i~i~d 210 (357)
.+...+.+..|+| +.|+.+..+ ..|++||+.+++.... ..+...+.+++|+|++. |+ +.+.++ .|++||
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 3445677888999 667766543 4799999988754332 23445566789999983 54 444444 578888
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+.. . ....+..+........|+|+++.|+..+. ++ .|+++|+.+++.. .+..+........|
T Consensus 265 ~~~----------~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 265 LDG----------K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYNASPSW 329 (417)
T ss_pred CCC----------C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCccCeEE
Confidence 761 1 12223334444556789999998876654 33 5888888765422 12223334445556
Q ss_pred cCc--eEEEecCCC---eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 288 VGD--LLASGSADR---TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 288 ~~~--~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+++ +|+.++.++ .|.+||+.++. .+. +... .......|+|+++ .|+..+.+
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~-~~~---l~~~-~~~~~p~~spdg~-------~l~~~~~~ 385 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGG-ERV---LTDT-GLDESPSFAPNGR-------MILYATTR 385 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCC-eEE---ccCC-CCCCCceECCCCC-------EEEEEEeC
Confidence 554 777766665 78899988752 122 2211 2234568999987 66555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-09 Score=78.83 Aligned_cols=244 Identities=9% Similarity=-0.055 Sum_probs=152.7
Q ss_pred eCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-------ceEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 46 SLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-------KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 46 ~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+.. .+-+|+.....+.+..+. ..+.|.|. .|+.|+..|...+|...+.+....+..
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y---------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd------- 112 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY---------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD------- 112 (344)
T ss_pred cceeeeEeccccCCchhhEEee---------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-------
Confidence 344 677787732222222221 24666663 289999999999999987664433322
Q ss_pred eeeeecCCCeEEEecccccccccccccE---EEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAV---SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
.|...| ...+-....+..++.|.++++.++.-+...... ....-.+.++.++++
T Consensus 113 ----------------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 113 ----------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSND 169 (344)
T ss_pred ----------------------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-eccccceeeeEEcCC
Confidence 111111 111222245667788889999888654333322 111133889999999
Q ss_pred Ce-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee-
Q 038568 195 GV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA- 272 (357)
Q Consensus 195 ~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 272 (357)
+. +++.+....|-.|.+... ...... .........-.+..|+.....+|++..||++.|||++....+...
T Consensus 170 ~~~~~~Vgds~~Vf~y~id~~------sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 170 PSWGSSVGDSRRVFRYAIDDE------SEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred CceEEEecCCCcceEEEeCCc------cceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 95 778888889999988721 111111 122333444567889998899999999999999999865533221
Q ss_pred -eeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcceeeeeee----cCC-cCceEEEEEeeCCC
Q 038568 273 -EALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENCYRCMAFL----EGH-EKPVKSLVAISSSS 335 (357)
Q Consensus 273 -~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~h-~~~v~~~~~~~~~~ 335 (357)
..-..|.+++..+.|++. +|...-.-+.+.+-|+++....+.+... ..| ...|..-.|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 223458899999999843 6666666788999999997544443322 122 24477777877765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-08 Score=82.16 Aligned_cols=294 Identities=8% Similarity=0.085 Sum_probs=174.7
Q ss_pred ccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC-------------
Q 038568 29 HMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD------------- 91 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d------------- 91 (357)
.-++..+++| |.+|++.....|.+|.- .....+..+. ...|..+.|+|++ |.+-+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g-~~~~~l~~~~-----~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGG-PSKAKLVRFR-----HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccc-cchhheeeee-----cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 4568888999 88888876669999998 6666665664 3578999999987 6654433
Q ss_pred --CeEEEEecCCccceeeeeecCccc--cceeeeecCCC--------eEEEecccccc--c---ccccccEEEEEEec--
Q 038568 92 --CKIRVWKITASRQHQLVSTLPTVK--DRLIRSVLPNN--------YVTVRRHKKRL--W---LEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 92 --~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~--~---~~~~~~v~~~~~~~-- 152 (357)
..+.+||..++..+..+...+... .......-.+. .+.+....... . .-....|....++|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 359999999987655554433321 10111111111 11111100000 0 01124577777887
Q ss_pred --CeEEE-----EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEE-E---e-------CCCeEEEEEccc
Q 038568 153 --GLMYS-----VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYT-G---S-------ADGRIRVWERSV 213 (357)
Q Consensus 153 --~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~---~-------~d~~i~i~d~~~ 213 (357)
..|+. ....+.+++|.+..+..+.+. .-....-..+.|.+.| +|++ . . ....+++++++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~- 263 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT- 263 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-
Confidence 23332 345678889988766655544 2233333467888877 2211 1 1 13567777775
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEE--ecCCeEEEEecccCCceeeeeeccCCccceEEEeec--C
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG--GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--G 289 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 289 (357)
...+.......++|...+|.|.++.+++. -.+-.+.++|++..- ...+. ...-..+.|+ .
T Consensus 264 ----------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl----~~~~P--e~~rNT~~fsp~~ 327 (561)
T COG5354 264 ----------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL----RFYFP--EQKRNTIFFSPHE 327 (561)
T ss_pred ----------ccccceeccccccceeeeecccCCceeEEecccccceeecccccce----EEecC--CcccccccccCcc
Confidence 11122222557899999999988765544 468889999998652 11221 1222334444 4
Q ss_pred ceEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC------CCCeEEecC
Q 038568 290 DLLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS------LNGEIKVWD 357 (357)
Q Consensus 290 ~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~------~dg~v~~wd 357 (357)
++++.++-| |.+-+||.... ..++..+.+.+ .+-+.|+|++. ++.+.- .|..|+|||
T Consensus 328 r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n--~s~~~wspd~q-------F~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLN--TSYCDWSPDGQ-------FYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred cEEEEecCCccccceEEeccCCc--eEEEEEeecCC--ceEeeccCCce-------EEEecCCCcccccCcceEEEE
Confidence 577776655 78999998875 34554555443 34567999997 655542 477788886
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-07 Score=70.39 Aligned_cols=262 Identities=10% Similarity=0.148 Sum_probs=159.0
Q ss_pred ceEEEeccCCc----cccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCc-cceeeeeecCccccce
Q 038568 49 EINVFDLISDY----SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITAS-RQHQLVSTLPTVKDRL 118 (357)
Q Consensus 49 ~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~-~~~~~~~~~~~~~~~~ 118 (357)
-|++|++ ++. ..++... ..+.++-|+|+|+. |.++.. +|.|..|.++.. .....+....
T Consensus 17 gI~v~~l-d~~~g~l~~~~~v~----~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~------ 85 (346)
T COG2706 17 GIYVFNL-DTKTGELSLLQLVA----ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT------ 85 (346)
T ss_pred ceEEEEE-eCcccccchhhhcc----ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc------
Confidence 8999999 531 1222222 77888999999987 777654 477888877653 1222222111
Q ss_pred eeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCc-chhhhhcc-cccccc--------
Q 038568 119 IRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASN-YKCLESVN-KAHEDA-------- 185 (357)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~-~~~~~~~~-~~~~~~-------- 185 (357)
....+-..+++++ ++++++.. .|.|.++-++. |....... ..|...
T Consensus 86 ---------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 86 ---------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ---------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 1112226777777 67777765 57899998865 33222211 123333
Q ss_pred --EEEEEEecCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEE
Q 038568 186 --VNAVVVSDNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVV 260 (357)
Q Consensus 186 --v~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v 260 (357)
+....+.|+++ +++.. .-..|.+|++. .+.........+ ........|.|+|++++..+.++ +++|.+
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~------dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLD------DGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcc------cCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 77888999994 44433 34578999987 222222222223 34456789999999998877766 999999
Q ss_pred EecccC-Cceeeeeecc------CCccce--EEEeecCceEEEecC-CCeEEEeeCCCC-cceeeeeeecCCcCceEEEE
Q 038568 261 WERERD-HRMVFAEALW------GHTGAL--LCLINVGDLLASGSA-DRTVRIWQRGKE-NCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 261 wd~~~~-~~~~~~~~~~------~~~~~v--~~~~~~~~~l~~~~~-dg~i~vw~~~~~-~~~~~~~~~~~h~~~v~~~~ 329 (357)
|..+.. ..+..++.+. ...... ..++.++++|.++.. ...|.+|.+... .....+.....+...-+.+.
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 998864 3222332221 112223 334455557666654 457888888653 23455555555666678999
Q ss_pred EeeCCCCCCCCeEEEEEcCCC-CeEEec
Q 038568 330 AISSSSSASNGIVSIGSGSLN-GEIKVW 356 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~d-g~v~~w 356 (357)
++++++ +|+.+..| ..|.+|
T Consensus 298 i~~~g~-------~Liaa~q~sd~i~vf 318 (346)
T COG2706 298 INPSGR-------FLIAANQKSDNITVF 318 (346)
T ss_pred eCCCCC-------EEEEEccCCCcEEEE
Confidence 999998 77777654 356554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-09 Score=79.77 Aligned_cols=171 Identities=12% Similarity=-0.040 Sum_probs=113.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
.+|+.|+..|...+|...+.+....+-..+...|+-+.-.-+. .+..++.|.++++.++.. .. ...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~------~s-~~~----- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG------DS-NKF----- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec------Cc-ccc-----
Confidence 6899999999999999987654443323333333222111122 477888999999998861 11 111
Q ss_pred eccc--cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 231 VKHR--STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 231 ~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
..|. -.+.+++++++++++++.+....|..|.+..................-.+.+|+.+ .+|++..||++.|||+
T Consensus 153 ~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 153 AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 1122 23789999999999999999999999999865543333222233333355566655 9999999999999999
Q ss_pred CCCcceee--eeeecCCcCceEEEEEeeCCC
Q 038568 307 GKENCYRC--MAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 307 ~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+....+.. -..-..|.+.++.+.|++-+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 87532211 122345889999999998554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-08 Score=82.27 Aligned_cols=263 Identities=10% Similarity=0.035 Sum_probs=152.5
Q ss_pred EecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceE-EEEEecCceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVK-SITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
..+..++.++.+ .+..+|. ++++.+-.... . +.+. +.....+.++.+..++.+.-+|..+++..-........
T Consensus 118 v~~~~v~v~~~~g~l~ald~-~tG~~~W~~~~---~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNA-EDGEVAWQTKV---A-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred EECCEEEEEcCCCEEEEEEC-CCCCCcccccC---C-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 345566777778 9999999 88888877763 2 2222 12233445777888999999999998765444321000
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccc------cEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHED------AVNA 188 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~ 188 (357)
. .......++ .....++.++.+|.+..+|..+++.+......... ....
T Consensus 193 ~---------------------~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 193 L---------------------TLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred c---------------------cccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 0 000011111 11256777888999999999999877665211110 0111
Q ss_pred EEEe---cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 189 VVVS---DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 189 ~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+..+ .++.++.++.+|.+..+|..+ ++ .+-... ......+.. .+..++.++.+|.+..+|..+
T Consensus 248 ~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~----~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 248 VDTTPVVVGGVVYALAYNGNLVALDLRS------GQ----IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred cCCCcEEECCEEEEEEcCCeEEEEECCC------CC----EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCC
Confidence 1112 256777788899999999872 22 111111 111112222 456788888999999999998
Q ss_pred CCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG 345 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~ 345 (357)
++.......... .........++.|+.++.||.|.+.|..+++ .+...+.....+.+--...++ .|+
T Consensus 314 G~~~W~~~~~~~--~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~---~~~~~~~~~~~~~s~P~~~~~--------~l~ 380 (394)
T PRK11138 314 GVELWSQSDLLH--RLLTAPVLYNGYLVVGDSEGYLHWINREDGR---FVAQQKVDSSGFLSEPVVADD--------KLL 380 (394)
T ss_pred CcEEEcccccCC--CcccCCEEECCEEEEEeCCCEEEEEECCCCC---EEEEEEcCCCcceeCCEEECC--------EEE
Confidence 875332221111 1122223346788899999999999999984 343333222223221111233 677
Q ss_pred EcCCCCeEEec
Q 038568 346 SGSLNGEIKVW 356 (357)
Q Consensus 346 s~~~dg~v~~w 356 (357)
.++.||.|..+
T Consensus 381 v~t~~G~l~~~ 391 (394)
T PRK11138 381 IQARDGTVYAI 391 (394)
T ss_pred EEeCCceEEEE
Confidence 78899998765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-08 Score=85.54 Aligned_cols=176 Identities=15% Similarity=0.074 Sum_probs=102.8
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~--~i~i~d 210 (357)
.+...+....|+| +.|+..+.+ ..|.+||+.+++..... ..........|+|+| +|+ +...++ .|.++|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4456788999999 667665543 36899999877543322 223345578999999 454 444455 577788
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. .+ . ...+..+........|+|||+.|+..+. +| .|+++|+.+++... + ...+.......++.
T Consensus 274 ~~------~~----~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~~~~~~~~~~~Sp 340 (430)
T PRK00178 274 LA------SR----Q-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TFVGNYNARPRLSA 340 (430)
T ss_pred CC------CC----C-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ecCCCCccceEECC
Confidence 76 11 1 1223334445567889999998776654 33 57778887665321 1 12222222233344
Q ss_pred cCceEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGDLLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+++.|+..+. ++ .|.+||+.+++. +.+.. ........|+|+++
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spdg~ 386 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPNGT 386 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCCCC
Confidence 4556555443 33 588899987642 22221 11223458999988
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=98.10 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=145.1
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~ 101 (357)
|..+|+.+-|+ ...+|+++.| .+..||+.....++..+.. -...-..++|+-.. +++.+..+.|++||.+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---ccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 99999999999 7899999999 9999999444455555554 55566788898432 55566667899999998
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+.....-. ++|...|+.+.|+. ..+.+.+.||+|+.||..........
T Consensus 190 gs~pl~s~-----------------------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 190 GSTPLCSL-----------------------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred CCcceEEe-----------------------------cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 76433222 27888899999988 88999999999999998764433322
Q ss_pred cccccccEEEEEEecCC--eEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec--------CC-
Q 038568 179 NKAHEDAVNAVVVSDNG--VVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG--------DG- 246 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~--~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~- 246 (357)
......++..-++.|-| +++- --.+..+.+++.+..+..........++..+.+|...|...-|-. +.
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 23456677777777744 3222 112235666665543333233345678899999999887665543 21
Q ss_pred -CEEEEEecCCeEEEEecc
Q 038568 247 -SLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 247 -~~l~~~~~dg~i~vwd~~ 264 (357)
-.|++=+.|..+++|-+.
T Consensus 321 dfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ceeEEEeecCCceEeeecc
Confidence 279999999999999875
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=87.13 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=118.6
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CCeEEEEeCCCeEEEEEccccccccccc-cceeeeeEeecc
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NGVVYTGSADGRIRVWERSVVDHNKERK-SRHMLVTTLVKH 233 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~ 233 (357)
++.+.+-.+-+-|++++... .| ...+.|.++.|.. +..++.|+.+|.|..+|++ ... ....+...+ -|
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR------~rnqG~~~~a~rl-yh 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLR------CRNQGNGWCAQRL-YH 297 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEee------ecccCCCcceEEE-Ec
Confidence 56666778888898876533 33 3667788888887 4479999999999999999 332 123333333 38
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee--c--CceEEEecCCCeEEEeeCCC
Q 038568 234 RSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN--V--GDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 234 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~vw~~~~ 308 (357)
.+.|+++..-. ++.+|++.+.+|+|.+||++..+...-+....||.+...-+-+ + ...+++++.|...|+|.++.
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 89999988776 7789999999999999999977754456777788654433222 2 23889999999999999998
Q ss_pred CcceeeeeeecC----CcCceEEEEEeeCC
Q 038568 309 ENCYRCMAFLEG----HEKPVKSLVAISSS 334 (357)
Q Consensus 309 ~~~~~~~~~~~~----h~~~v~~~~~~~~~ 334 (357)
+ ..+.++.. ....+.+++|...-
T Consensus 378 g---hLl~tipf~~s~~e~d~~sv~~~sr~ 404 (425)
T KOG2695|consen 378 G---HLLCTIPFPYSASEVDIPSVAFDSRL 404 (425)
T ss_pred C---ceeeccCCCCccccccccceehhccc
Confidence 8 44444432 22356677776543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-07 Score=73.26 Aligned_cols=262 Identities=7% Similarity=-0.009 Sum_probs=145.8
Q ss_pred CceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEee---------cCCeEEEEecCCccceeeeeecCccc
Q 038568 48 NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAH---------QDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 48 d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
+.|.+.|. ++.+.+..+.. -..+ ..+ ++||+ .++.+ .+..|.+||..+.+....+...+...
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~---G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDG---GFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEc---cCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 38999999 88888888875 2222 234 89986 44445 58899999999988766655322100
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-c-CCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-W-DRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
. .....-..++++| ++++... . +..|.+.|+.+++.+.++.. .....-...
T Consensus 101 ~-----------------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t 155 (352)
T TIGR02658 101 F-----------------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPT 155 (352)
T ss_pred h-----------------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEe
Confidence 0 0112234567777 5666555 3 78999999999999888722 222222222
Q ss_pred ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEec-CCCEEEEEecCCeEEEEecccCCce
Q 038568 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNG-DGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 192 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.+..+.+-+.||......+.... +........+.....++. .-.|.+ +|+++++..+ |+|.+.|+......
T Consensus 156 -~e~~~~~~~~Dg~~~~v~~d~~g-----~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~ 228 (352)
T TIGR02658 156 -ANDTFFMHCRDGSLAKVGYGTKG-----NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK 228 (352)
T ss_pred -cCCccEEEeecCceEEEEecCCC-----ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce
Confidence 22223344556665554443111 000000011111000100 004456 8888888776 99999996543211
Q ss_pred e--eeeeccC-------CccceEEEeecC--ceEEE-e---------cCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 270 V--FAEALWG-------HTGALLCLINVG--DLLAS-G---------SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 270 ~--~~~~~~~-------~~~~v~~~~~~~--~~l~~-~---------~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
. ....+.. ..+...-+++++ +.++. . ...+.|.++|..+. +.+..+.. ...+..+
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~i 304 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSI 304 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeE
Confidence 1 1111100 112222255554 44444 2 12258999999987 45555443 3578999
Q ss_pred EEeeCCCCCCCCeEEE-EEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSI-GSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l-~s~~~dg~v~~wd 357 (357)
+++||++ ..| ++...++.|.+.|
T Consensus 305 avS~Dgk------p~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 305 NVSQDAK------PLLYALSTGDKTLYIFD 328 (352)
T ss_pred EECCCCC------eEEEEeCCCCCcEEEEE
Confidence 9999986 244 4554678888765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-09 Score=83.41 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=101.1
Q ss_pred cceEEEeeCC-ceEEEeccCCcc---ccceeccccCCCCceEEEEEec---Cc--eEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYS---HVDTFSNDLSSSGSVKSITFHI---TK--IFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~---~~--l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+++||++..+ ...++++..+.+ .+..+. -...-+++.|.. .. ...++....+.+|....+.....
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~----v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~-- 147 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC----VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI-- 147 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEee----cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh--
Confidence 7889988888 777777733322 122222 222333444433 22 22334455566666554322111
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.+|-+.+++++++| .+++++..|..|++-.....-.+..+..+|...|.
T Consensus 148 -----------------------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 148 -----------------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred -----------------------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 29999999999999 89999999999999998887788888789999999
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEcccc
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~ 214 (357)
.++.-++..|++++.|+++++||++.+
T Consensus 199 ~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 199 TISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eeeeccCceeeecCCCCcEEEEecccC
Confidence 999998888999999999999999843
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=81.62 Aligned_cols=235 Identities=12% Similarity=-0.002 Sum_probs=129.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc----e-EEeecCC--eEEEEecCCccceeeeeecCccccceeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----I-FTAHQDC--KIRVWKITASRQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l-~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 121 (357)
.|.+.|. +.. ..+.+.. ....+.+=+|+||+ + ++...+| .|.+.++.+++.. .+..+
T Consensus 166 ~l~~~d~-dG~-~~~~lt~---~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~---------- 229 (428)
T PRK01029 166 ELWSVDY-DGQ-NLRPLTQ---EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILAL---------- 229 (428)
T ss_pred eEEEEcC-CCC-CceEccc---CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecC----------
Confidence 5666666 443 3344543 55566778999995 2 2343443 4777788766532 22222
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-----CCeEEEEEcCcc--hhhhhccccccccEEEEEEe
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----DRSFKIWNASNY--KCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~ 192 (357)
.+......|+| +.|+..+. +-.+..|++..+ .....+...........+|+
T Consensus 230 --------------------~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 230 --------------------QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred --------------------CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 23334568888 45554442 223445776653 12222212222334578999
Q ss_pred cCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCC
Q 038568 193 DNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDH 267 (357)
Q Consensus 193 ~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~ 267 (357)
|||. |+..+ .+|...+|.+... . .......+..+...+....|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~----~---~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQID----P---EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECc----c---cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 9994 55444 4666666654310 0 011122233344566788999999988876543 469999998776
Q ss_pred ceeeeeeccCCccceEEEeecCc--eEE-EecC--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 268 RMVFAEALWGHTGALLCLINVGD--LLA-SGSA--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~--~l~-~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.... ......+....|+++ .|+ ++.. ...|+++|+..++. + .+....+.+...+|+|..
T Consensus 363 ~~~L----t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~---~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 DYQL----TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-R---KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEEc----cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-E---EeecCCCcccCceecCCC
Confidence 4322 112223445666655 444 3332 45788889887632 2 222234456677888753
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-09 Score=83.96 Aligned_cols=250 Identities=12% Similarity=0.137 Sum_probs=166.1
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccC--CccccceeccccCCCCceEEEEEecCc--eEEeec-CCeEEEEecC
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLIS--DYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-DCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-d~~i~vwd~~ 100 (357)
|.+.|+.+... .+++.+|+.| .++.|.... .-+.+..+.. |...|.+++.+-++ +.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 99999999888 9999999999 999998722 1244566666 89999999999888 666566 8999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEE-EEecCCeEEEEEcCcch-h
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMY-SVSWDRSFKIWNASNYK-C 174 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~-~~~~dg~i~iwd~~~~~-~ 174 (357)
+-.....++.. ...+.+ ++..++ ..++ +.-.+|.+.++|-...- +
T Consensus 85 n~DminmiKL~----------------------------~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q 135 (558)
T KOG0882|consen 85 NFDMINMIKLV----------------------------DLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ 135 (558)
T ss_pred ccchhhhcccc----------------------------cCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence 76554333221 001111 111222 1333 33457889999976543 3
Q ss_pred hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc-----ccceeeeeEeeccccceeEEEEecCCCE
Q 038568 175 LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER-----KSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
...+..-|..+|.++.+.+-+ .+++....|.|.-|.....-..... -.....+..+........++.|+|++..
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 334446789999999999988 4778888999999987620000000 0111223334445667889999999999
Q ss_pred EEEEecCCeEEEEecccCCceeeeee-----------------------------ccCCccce---EEEeecCceEEEec
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEA-----------------------------LWGHTGAL---LCLINVGDLLASGS 296 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------------------~~~~~~~v---~~~~~~~~~l~~~~ 296 (357)
+.+-+.|..|++++.++++....+.. +..|...+ .++.-++++|+-|+
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 99999999999999987764332211 11122111 23334456888777
Q ss_pred CCCeEEEeeCCCCc
Q 038568 297 ADRTVRIWQRGKEN 310 (357)
Q Consensus 297 ~dg~i~vw~~~~~~ 310 (357)
-=| |++.++.++.
T Consensus 296 ~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 296 ILG-IKVINLDTNT 308 (558)
T ss_pred cee-EEEEEeecCe
Confidence 766 7888887763
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-07 Score=73.44 Aligned_cols=166 Identities=9% Similarity=0.067 Sum_probs=116.8
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEec--CceEEeecCC-eEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI--TKIFTAHQDC-KIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
|++++..|..+..|.+. ..+-.++. ++.+.|.-..+.. ..++.|..|| .+-|+|.++++.....
T Consensus 332 Gd~ia~VSRGkaFi~~~-~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e------- 398 (668)
T COG4946 332 GDYIALVSRGKAFIMRP-WDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE------- 398 (668)
T ss_pred CcEEEEEecCcEEEECC-CCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-------
Confidence 89999999887777766 33333332 2677787777764 4599999999 8999999988654433
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
..-+.|.++..++ +.++.+.....|.+.|+.++.....- ....+-|+.+.|+|
T Consensus 399 ------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~ 453 (668)
T COG4946 399 ------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHP 453 (668)
T ss_pred ------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcC
Confidence 3457899999999 67888888888999999998765433 56678899999999
Q ss_pred CCe-EEEEeC----CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 194 NGV-VYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 194 ~~~-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
+++ ++-+-- -..|+++|+. ..+ +.......+.=.+-+|.|++++|.--+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~----------~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMD----------GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecC----------CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 996 554444 4568999987 112 222222223334567888888776543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=89.85 Aligned_cols=184 Identities=14% Similarity=0.213 Sum_probs=140.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+..++.|+-. .+..+|+ .+.+..+...- ....|+-|..+...+.+|...|+|.+-|.++-+.+..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl-~~~~e~r~~~v---~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDL-NTEKETRTTNV---SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-------- 214 (1118)
T ss_pred Ccceeecchhhheeeeec-ccceeeeeeec---cCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee--------
Confidence 5667777766 8888999 77776666654 444587787777779999999999999999887665554
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEec---------CCeEEEEEcCcchhhhhccccccccEEE
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSW---------DRSFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
.|++.|.++....+.|++++. |.-|+|||++..+.+..+ .-+. ...-
T Consensus 215 ----------------------aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~-~P~f 270 (1118)
T KOG1275|consen 215 ----------------------AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPY-GPQF 270 (1118)
T ss_pred ----------------------ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-cccc-Cchh
Confidence 899999999999999999886 556899999998888777 2222 2356
Q ss_pred EEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 189 VVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 189 ~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+.|+|.- ++++++..|...+.|.. +-......+..+......+..+++++++..++.|..+|.|.+|.-+
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~------~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTA------TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred hhhcccccceEEEEecccceeecccc------ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 7788865 69999999999999943 1111222233334445669999999999999999999999999743
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-07 Score=78.37 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred EecceEEEeeCC-ceEEEeccCCccccceeccccCC-------CCce-EEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-------SGSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-------~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
+.+..+++++.+ .+.-+|. ++++.+-........ ...+ ..+....+.++.++.++.+.-+|.++++..-.
T Consensus 67 v~~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EECCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 347778888877 9999999 888877665431100 0011 12334445588888899999999998876544
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEecCCeEEEEEcCcchhhhhcccccccc-
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA- 185 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 185 (357)
.... ..+. +-......++.+..+|.+..+|.++|+.+..+.......
T Consensus 146 ~~~~-------------------------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 146 TKVA-------------------------------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ccCC-------------------------------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 3221 1111 111223667778889999999999999887763211100
Q ss_pred ---EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee-Eee-ccc-cceeEEEEec--CCCEEEEEecCCe
Q 038568 186 ---VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT-TLV-KHR-STVNALALNG--DGSLLFSGGCDRW 257 (357)
Q Consensus 186 ---v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~-~~~-~~v~~~~~~~--~~~~l~~~~~dg~ 257 (357)
..+-.. .++.++.+..+|.+..+|..+++. ..+... ... .+. .....+..+| .+..++.++.+|.
T Consensus 195 ~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~------~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 195 LRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQL------IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred ccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChh------hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 001111 134677788899999888873222 111100 000 000 0001111122 2456777788999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
+..+|..+++...... + + ....+...++.++.++.+|.+..+|..+++
T Consensus 268 l~ald~~tG~~~W~~~-~-~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 268 LVALDLRSGQIVWKRE-Y-G---SVNDFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred EEEEECCCCCEEEeec-C-C---CccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 9999999887543221 1 1 112234556788888899999999998874
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-10 Score=59.65 Aligned_cols=38 Identities=32% Similarity=0.716 Sum_probs=36.0
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++..+.+|.++|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------cceeeCCCCEEEEEC
Confidence 56888999999999999999998 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-06 Score=82.33 Aligned_cols=261 Identities=12% Similarity=0.081 Sum_probs=141.6
Q ss_pred eEEEEe---cceEEEeeCC-ceEEEeccCCccccceecccc-----------CCCCceEEEEEecCc--eEEe-ecCCeE
Q 038568 33 SCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-----------SSSGSVKSITFHITK--IFTA-HQDCKI 94 (357)
Q Consensus 33 ~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~~~~~--l~~~-~~d~~i 94 (357)
..++++ ++++++-+.+ .|++||. .. ..+..+.+.. ..-.....+++.+++ |+.+ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~-~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL-DG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC-CC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 346675 4455555566 9999998 54 3333332100 011235788888754 4444 345678
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 171 (357)
+++|+.++... .+.... .... ... +...... ..-..-..+++++ ..+++.+.++.|++||..+
T Consensus 649 r~id~~~~~V~-tlag~G-~~g~---~~~--------gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNG-TKGS---DYQ--------GGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred EEEecCCCEEE-EEeccC-cccC---CCC--------CChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 88988765321 111100 0000 000 0000000 0011235788887 4566667789999999876
Q ss_pred chhhhhcc--------cc------ccccEEEEEEecCC-e-EEEEeCCCeEEEEEcccccccccc--cc-ceeeeeEee-
Q 038568 172 YKCLESVN--------KA------HEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKER--KS-RHMLVTTLV- 231 (357)
Q Consensus 172 ~~~~~~~~--------~~------~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~--~~-~~~~~~~~~- 231 (357)
+... .+. .+ .-.....++++|++ . +++-+.++.|++||+......... .. .......+.
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 5432 110 00 11235679999987 3 556667799999998732110000 00 000000000
Q ss_pred -------ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec----------cCCccceEEEeec--CceE
Q 038568 232 -------KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL----------WGHTGALLCLINV--GDLL 292 (357)
Q Consensus 232 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~--~~~l 292 (357)
..-.....++++++|+++++-..+++|++||..++........- .+.-.....++++ ++.+
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 01112468999999998888888999999999876532221110 0111123445554 4578
Q ss_pred EEecCCCeEEEeeCCCCc
Q 038568 293 ASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~ 310 (357)
++-+.++.|++||+++++
T Consensus 874 VaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEECCCCEEEEEECCCCc
Confidence 888889999999998864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-07 Score=80.78 Aligned_cols=176 Identities=13% Similarity=0.053 Sum_probs=97.9
Q ss_pred cccccEEEEEEec--CeEEEEec-CC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCe--EEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSW-DR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGR--IRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~--i~i~d 210 (357)
.+...+.+..|+| +.|+..+. ++ .|.+||+.+++... + ...........|+|||. |+ +...++. |.++|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 4456788889999 56665543 33 58899998776422 2 12223344689999994 54 4556665 66667
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . .+ ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++... + ...++...-..++.
T Consensus 293 l~------t----g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L-t~~g~~~~~~~~Sp 359 (448)
T PRK04792 293 IA------T----KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L-TFEGEQNLGGSITP 359 (448)
T ss_pred CC------C----CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E-ecCCCCCcCeeECC
Confidence 65 1 11 2233334445677899999998876554 33 57777777665321 1 12222221123344
Q ss_pred cCceEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGDLLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++++|+..+. ++ .|.++|+.+++. +.+ ... .......|+|+++
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~l---t~~-~~d~~ps~spdG~ 405 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAM-QVL---TST-RLDESPSVAPNGT 405 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCe-EEc---cCC-CCCCCceECCCCC
Confidence 4445544433 44 456677777632 222 211 1122447999987
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-07 Score=75.47 Aligned_cols=291 Identities=9% Similarity=0.080 Sum_probs=165.4
Q ss_pred eEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec-----------CCeEEEE
Q 038568 33 SCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-----------DCKIRVW 97 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-----------d~~i~vw 97 (357)
+-+.|| |.||+|--..-|.+|-- ++...++.|. |. .|.-+.|+|+. |+|-+. ...++||
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG-~~f~r~~RF~----Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGG-ESFDRIQRFY----HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecC-ccHHHHHhcc----CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 457788 99999876559999998 8888888886 54 57889999975 777553 2579999
Q ss_pred ecCCccceeeeeecCccccceeeeec--CC--------CeEEEecccc-cccc---cccccEEEEEEec--CeEEEEec-
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVL--PN--------NYVTVRRHKK-RLWL---EHWDAVSDLVVKQ--GLMYSVSW- 160 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~-~~~~---~~~~~v~~~~~~~--~~l~~~~~- 160 (357)
|+.+|...+.+..+...........+ .+ +.+.+..... ..+. -.-..|....|+| +.||--..
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99999877776664322111111111 11 1111111111 1111 1224567778888 44443222
Q ss_pred ----CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEE----------EeCCCeEEEEEcccccccccccccee
Q 038568 161 ----DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYT----------GSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 161 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~----------~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
-..+.+..+.+++.+.+. +-+.-.=..+-|-.+| +|+. .+.-..+-|+.++ + ..-
T Consensus 368 ~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------e---KdI 437 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------E---KDI 437 (698)
T ss_pred ccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee------c---cCC
Confidence 123555555555555544 2233222345555555 3321 1122234455554 1 112
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEec---CCeEEEEecc-cCCceeeeeeccCCccceEEEeecCc--eEEE---ec
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGC---DRWIVVWERE-RDHRMVFAEALWGHTGALLCLINVGD--LLAS---GS 296 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~---~~ 296 (357)
++... .....|...+|-|.|+.+++-+. ..++.+|.++ +...+..+..+.. ...+.+.|+|. +++. +|
T Consensus 438 pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 438 PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecc
Confidence 22222 34567889999999987766543 3568889887 4444444444433 33456667765 4443 34
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
..|.+..+|..... .+... ...| -..+.+.|.|.|+ +++|++.-+.
T Consensus 515 ~~g~l~F~D~~~a~-~k~~~-~~eh-~~at~veWDPtGR-------YvvT~ss~wr 560 (698)
T KOG2314|consen 515 RRGDLEFYDTDYAD-LKDTA-SPEH-FAATEVEWDPTGR-------YVVTSSSSWR 560 (698)
T ss_pred cccceEEEecchhh-hhhcc-Cccc-cccccceECCCCC-------EEEEeeehhh
Confidence 67899999998521 11111 1123 2467899999999 9999876443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-07 Score=71.50 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=124.0
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE-ecCeEEEEecCCeEEEEEc
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-KQGLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~ 169 (357)
+|+|..||..+++..-.....+ .... ..+... ..+.+++++.++.|..||.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~---------------------------~~~~-~~~~~~~~~~~v~~~~~~~~l~~~d~ 53 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP---------------------------GIGG-PVATAVPDGGRVYVASGDGNLYALDA 53 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS---------------------------SCSS-EEETEEEETTEEEEEETTSEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCC---------------------------CCCC-ccceEEEeCCEEEEEcCCCEEEEEEC
Confidence 6889999998887665543211 1112 222233 3477888899999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe-ecc---ccceeEEEEecC
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKH---RSTVNALALNGD 245 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~~~~~~ 245 (357)
.+|+.+..+.. ...+.......++.++++..++.++.+|.. + .+.+... ... ............
T Consensus 54 ~tG~~~W~~~~--~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~------t----G~~~W~~~~~~~~~~~~~~~~~~~~~ 121 (238)
T PF13360_consen 54 KTGKVLWRFDL--PGPISGAPVVDGGRVYVGTSDGSLYALDAK------T----GKVLWSIYLTSSPPAGVRSSSSPAVD 121 (238)
T ss_dssp TTSEEEEEEEC--SSCGGSGEEEETTEEEEEETTSEEEEEETT------T----SCEEEEEEE-SSCTCSTB--SEEEEE
T ss_pred CCCCEEEEeec--cccccceeeecccccccccceeeeEecccC------C----cceeeeeccccccccccccccCceEe
Confidence 99998877732 222111124446677777788899999987 2 2222221 111 011122222233
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccCCc-cc-------eEEEeecCceEEEecCCCe-EEEeeCCCCcceeeee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT-GA-------LLCLINVGDLLASGSADRT-VRIWQRGKENCYRCMA 316 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~-------v~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~ 316 (357)
+..++++..++.|..+|+++++.+.......... .. ...+...++.++.++.++. +.+ |+.+++ .+-
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~---~~w 197 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE---KLW 197 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE---EEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC---EEE
Confidence 7788888889999999999998654443311111 11 1333444457777777775 555 999984 222
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
... ...+..+ ...++. .|+.++.|+.|..||
T Consensus 198 ~~~--~~~~~~~-~~~~~~-------~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 198 SKP--ISGIYSL-PSVDGG-------TLYVTSSDGRLYALD 228 (238)
T ss_dssp EEC--SS-ECEC-EECCCT-------EEEEEETTTEEEEEE
T ss_pred Eec--CCCccCC-ceeeCC-------EEEEEeCCCEEEEEE
Confidence 222 2223221 334444 666666899998876
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=79.81 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=99.6
Q ss_pred EEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEe
Q 038568 187 NAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWE 262 (357)
Q Consensus 187 ~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd 262 (357)
..+..++.++ ++++..+....+++++ ......++...... ...-+++.|..+......+..-| .+.+|+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~------~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYR------ENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEe------cCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 3444566664 6667777777788776 22222223322222 22334555555555555554444 445555
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
...+ ......||-..++.++++++ +|+++..|..||+-.+... ...-...-||..-|..++.-++.
T Consensus 139 ~~~~----~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~------ 206 (390)
T KOG3914|consen 139 ADSG----RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNY------ 206 (390)
T ss_pred cccc----CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCc------
Confidence 4433 33455689999999999887 9999999999999887764 22233456899999999998886
Q ss_pred eEEEEEcCCCCeEEecC
Q 038568 341 IVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~~~dg~v~~wd 357 (357)
.|+|+|.|++|++||
T Consensus 207 --~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWD 221 (390)
T ss_pred --eeeecCCCCcEEEEe
Confidence 689999999999997
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=77.37 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=135.6
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-h----hhhccccc------------cccEEEEEEecCC---eEE
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-C----LESVNKAH------------EDAVNAVVVSDNG---VVY 198 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~~v~~~~~~~~~---~l~ 198 (357)
....|+++.|.. .++++|...|.|.++.-+... | ...+ +.| ...|..+.|..++ .++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 356789999988 899999989999999755422 1 1122 222 3467888887665 488
Q ss_pred EEeCCCeEEEEEcccccccc-------------cc----c----------ccee-----eeeEe-eccccceeEEEEecC
Q 038568 199 TGSADGRIRVWERSVVDHNK-------------ER----K----------SRHM-----LVTTL-VKHRSTVNALALNGD 245 (357)
Q Consensus 199 ~~~~d~~i~i~d~~~~~~~~-------------~~----~----------~~~~-----~~~~~-~~~~~~v~~~~~~~~ 245 (357)
..+.|.+|++|.+..-...- .+ . .... +.+.. ..|..-++++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 88999999999986321000 00 0 0000 00111 346667889999998
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccCCcc-----ceEEEeecCc---eEEEecCCCeEEEeeCCCCcc----ee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG-----ALLCLINVGD---LLASGSADRTVRIWQRGKENC----YR 313 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~----~~ 313 (357)
...++++ .|=+|.+|++.-......+-....|.. .|++..|+|. .+.-.++.|.|++-|++.... .+
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8877776 567799999986554334444445543 3577788886 677778899999999984210 00
Q ss_pred ---------eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 ---------CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+.+-...|..+.|+++++ ++++-+ =-+|++||
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngr-------yIlsRd-yltvkiwD 307 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGR-------YILSRD-YLTVKIWD 307 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCc-------EEEEec-cceEEEEe
Confidence 0111223346788999999998 888765 34899997
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-06 Score=82.27 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=118.3
Q ss_pred cEEEEEEec--CeEEEE-ecCCeEEEEEcCcchhhhhccc---------c-------ccccEEEEEEec-CCe-EEEEeC
Q 038568 144 AVSDLVVKQ--GLMYSV-SWDRSFKIWNASNYKCLESVNK---------A-------HEDAVNAVVVSD-NGV-VYTGSA 202 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~---------~-------~~~~v~~~~~~~-~~~-l~~~~~ 202 (357)
.-..+++.+ +.|+.+ ..++.|+++|..++.. .++.. + .-.....++++| ++. +++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 456778876 545444 4457899999866432 22100 0 012335789999 454 666677
Q ss_pred CCeEEEEEccccccccccccceeeeeEee------ccccceeEEEEecCCCEE-EEEecCCeEEEEecccCCceeeee--
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALALNGDGSLL-FSGGCDRWIVVWERERDHRMVFAE-- 273 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~-- 273 (357)
++.|++||........- ...... .... ..-.....++++|+++.| ++-+.++.|++||+.++.......
T Consensus 704 ~~~I~v~d~~~g~v~~~-~G~G~~-~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVF-SGDGYE-RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEEEE-ecCCcc-ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 89999999862110000 000000 0000 011345679999998854 455567899999998654321110
Q ss_pred --------eccCC--------ccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeee----------ecCCcCce
Q 038568 274 --------ALWGH--------TGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAF----------LEGHEKPV 325 (357)
Q Consensus 274 --------~~~~~--------~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~h~~~v 325 (357)
.+... -.....+++++ +.+++-..++.|++||..++........ ..+.-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00000 00123455554 4778888899999999987532111110 11122357
Q ss_pred EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 326 KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++++++++ ++++-+.++.|++||
T Consensus 862 ~GIavd~dG~-------lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 862 AGLALGENGR-------LFVADTNNSLIRYLD 886 (1057)
T ss_pred eEEEEeCCCC-------EEEEECCCCEEEEEE
Confidence 7899999998 888889999999996
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=89.83 Aligned_cols=179 Identities=12% Similarity=0.198 Sum_probs=131.9
Q ss_pred EecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
..+..++-|+--..+..+|+++.+..+.. .-....+.-|+. ++ .+++|...|+|.+-|.+ ..+.+.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~----------s~~~ih 211 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPN----------SFETIH 211 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeee-eccCCceEEEEe--cCcEEEeecccceEEeecCC----------cCceee
Confidence 34466777777777888999988777665 333334555553 44 58999999999999988 677889
Q ss_pred EeeccccceeEEEEecCCCEEEEEec---------CCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEec
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGC---------DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGS 296 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~ 296 (357)
++..|.+.|..+.. .|+.|++++. |.-|+|||++..+.+.++... .++ .-+.|.|. .+++++
T Consensus 212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCc-hhhhhcccccceEEEEe
Confidence 99999999976655 5788998875 556899999988765554432 222 22345554 889999
Q ss_pred CCCeEEEee---CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 297 ADRTVRIWQ---RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..|...+-| +.++ ...+..+......+.++++++++. .++-|..+|.|.+|
T Consensus 286 ~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~-------alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGD-------ALAFGDHEGHVNLW 339 (1118)
T ss_pred cccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCc-------eEEEecccCcEeee
Confidence 999999999 4433 233344444555699999999998 99999999999999
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-07 Score=78.23 Aligned_cols=178 Identities=13% Similarity=-0.021 Sum_probs=95.4
Q ss_pred ccEEEEEEec--Ce---EEEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEe-CCC----eEEEE
Q 038568 143 DAVSDLVVKQ--GL---MYSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGS-ADG----RIRVW 209 (357)
Q Consensus 143 ~~v~~~~~~~--~~---l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~----~i~i~ 209 (357)
....+-.|+| +. +++...+| .|.+.++.+++..... ..........|+||| +|+..+ .+| .+..|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 3445668888 22 23444443 5778888776543322 234445568999999 455433 223 34446
Q ss_pred EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEE--ecccCCceeeeeeccCCccceEEEe
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVW--ERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
++.. .. ..................+|+|||+.|+..+ .+|...+| ++..... ....+..+...+....
T Consensus 263 ~~~~------g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 263 SLET------GA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLTKKYRNSSCPA 333 (428)
T ss_pred eccc------CC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEeccCCCCcccee
Confidence 6541 10 0111122222223346789999999877665 46654455 4432111 1122222333445556
Q ss_pred ecCc--eEEEecC-C--CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 287 NVGD--LLASGSA-D--RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 287 ~~~~--~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+|+ .|+..+. + ..|.+||+.+++.. .+......+....|+||++
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~----~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDY----QLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeE----EccCCCCCccceEECCCCC
Confidence 6665 5655443 2 47999999887422 2222234567889999987
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=56.42 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=35.9
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
+++..+.+|..+|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-06 Score=69.12 Aligned_cols=217 Identities=10% Similarity=0.085 Sum_probs=126.3
Q ss_pred cceEEEeeC----------C-ceEEEeccCCccccceeccccC-C---CCceEEEEEecCc--eEEee-c-CCeEEEEec
Q 038568 39 NSLLYAASL----------N-EINVFDLISDYSHVDTFSNDLS-S---SGSVKSITFHITK--IFTAH-Q-DCKIRVWKI 99 (357)
Q Consensus 39 ~~~l~t~~~----------d-~i~iw~~~~~~~~~~~~~~~~~-~---~~~v~~l~~~~~~--l~~~~-~-d~~i~vwd~ 99 (357)
++.|+++.. + .|.+||. .+.+.+..+..... + ......++++||+ |+... . +..|.+.|+
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC
Confidence 777777666 4 9999999 99999888874111 1 2233478899987 55444 3 789999999
Q ss_pred CCccceeeeeecCccccceeeeec---------CCCeEEEec--------ccccccccccccEEEE-EEec---CeEEEE
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVL---------PNNYVTVRR--------HKKRLWLEHWDAVSDL-VVKQ---GLMYSV 158 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~v~~~-~~~~---~~l~~~ 158 (357)
.+++....+.... ........ ......+.. ....++..-..++..- .|.+ .+++..
T Consensus 136 ~~~kvv~ei~vp~---~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 136 EGKAFVRMMDVPD---CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred CCCcEEEEEeCCC---CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9998776665421 11111111 111111111 0001111100000000 2233 344444
Q ss_pred ecCCeEEEEEcCc-----chhhhhcccc------ccccEEEEEEecCC-eEEEEe----------CCCeEEEEEcccccc
Q 038568 159 SWDRSFKIWNASN-----YKCLESVNKA------HEDAVNAVVVSDNG-VVYTGS----------ADGRIRVWERSVVDH 216 (357)
Q Consensus 159 ~~dg~i~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~~~~-~l~~~~----------~d~~i~i~d~~~~~~ 216 (357)
. .|+|.+.|+.. .+.+..+... ......-+++++++ ++++.. ..+.|.++|..
T Consensus 213 ~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---- 287 (352)
T TIGR02658 213 Y-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---- 287 (352)
T ss_pred c-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC----
Confidence 4 49999999543 2222222111 23344459999988 455532 22579999987
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCC-EEEEEe-cCCeEEEEecccCCceee
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGG-CDRWIVVWERERDHRMVF 271 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~ 271 (357)
..+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+.+.+..
T Consensus 288 ------t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 288 ------TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ------CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 4455555542 45789999999999 777666 578899999998875443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-06 Score=65.86 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=128.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEE-ecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|..||. .+++.+........ .....+... ..+.+++++.++.|..||..+++..-......
T Consensus 4 ~l~~~d~-~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--------------- 66 (238)
T PF13360_consen 4 TLSALDP-RTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--------------- 66 (238)
T ss_dssp EEEEEET-TTTEEEEEEECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS---------------
T ss_pred EEEEEEC-CCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------------
Confidence 7889998 88888877753111 222222234 33448888899999999999987655544311
Q ss_pred EEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccc----c-ccEEEEEEecCCeEEEEeC
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH----E-DAVNAVVVSDNGVVYTGSA 202 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~-~~v~~~~~~~~~~l~~~~~ 202 (357)
..... .....+.++.++.++.|..+|..+++.+....... . .......+. ++.++++..
T Consensus 67 ------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 130 (238)
T PF13360_consen 67 ------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS 130 (238)
T ss_dssp ------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET
T ss_pred ------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec
Confidence 10111 23333777778788999999999999888741211 1 111222222 447888888
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccc----------e-eEEEEecCCCEEEEEecCCeEEEEecccCCceee
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST----------V-NALALNGDGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
++.|..+|+++ ++.+......... + ..+.+. ++ .++.++.++.+..+|+.+++...
T Consensus 131 ~g~l~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w- 197 (238)
T PF13360_consen 131 SGKLVALDPKT----------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLW- 197 (238)
T ss_dssp CSEEEEEETTT----------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEE-
T ss_pred cCcEEEEecCC----------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEE-
Confidence 99999999882 3333333222211 1 222222 44 77777777764444999887432
Q ss_pred eeeccCCccceEE-EeecCceEEEecCCCeEEEeeCCCCc
Q 038568 272 AEALWGHTGALLC-LINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 272 ~~~~~~~~~~v~~-~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
.. . ...... ....++.|+.++.++.|..||+++++
T Consensus 198 -~~-~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 -SK-P--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EE-C--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -Ee-c--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 11 1 111333 55666777777799999999999983
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-06 Score=64.33 Aligned_cols=255 Identities=11% Similarity=0.128 Sum_probs=147.7
Q ss_pred CccceeEEEEe--cceEEEee-C--C-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAAS-L--N-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~-~--d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~v 96 (357)
+.+..+-|+++ ++.|.++- . + .|-.|.+ +. ++. ..+........+-..++.++++ ++++ -..|.|.+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-D~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-DPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-cCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 66778889999 66777765 2 4 7777777 43 332 2121111133444889999887 4444 35688999
Q ss_pred EecCCc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcc
Q 038568 97 WKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNY 172 (357)
Q Consensus 97 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~ 172 (357)
+.++.. .....+....-... ... -......+....+.| ++|++..- --.|.+|++..+
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~-----------------~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGS-----------------GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred EEcccCCccccceeeeecCCC-----------------CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 998663 32222121100000 000 001122367788888 56666643 236999999866
Q ss_pred hhhhhc--cccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEee------ccccceeEEEE
Q 038568 173 KCLESV--NKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALAL 242 (357)
Q Consensus 173 ~~~~~~--~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~ 242 (357)
+....- ........+.|.|+|+++ .++.--+++|.+|.... .......++.+. ........|..
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP------AVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC------CCceEEEeeeeccCccccCCCCceeEEEE
Confidence 533221 124456778999999995 44566789999999872 111222222221 12345678999
Q ss_pred ecCCCEEEEEec-CCeEEEEecccCC-ceeeeeeccCCccceEEEee--cCceEEEecC-CCeEEEeeCCC
Q 038568 243 NGDGSLLFSGGC-DRWIVVWERERDH-RMVFAEALWGHTGALLCLIN--VGDLLASGSA-DRTVRIWQRGK 308 (357)
Q Consensus 243 ~~~~~~l~~~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vw~~~~ 308 (357)
++||++|.++.. ...|.+|.+.... .+........+...-+.+.+ ++++|+++.. +..|.+|..+.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999999988754 3478888887543 23333333333333344444 4556666655 45788887764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-06 Score=77.51 Aligned_cols=235 Identities=16% Similarity=0.148 Sum_probs=143.4
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEE----ecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVW----KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA 144 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
....|.++.|.++. ++.+..+|.|.+. +..... ...+. .-...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG------------------------------~vd~G 122 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVG------------------------------SVDSG 122 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEE------------------------------EEcCc
Confidence 45789999999876 8889999999999 443322 12222 33568
Q ss_pred EEEEEEec--CeEEEEecCCeEEEEEcC---------------c--------chhhhhcc------------c-------
Q 038568 145 VSDLVVKQ--GLMYSVSWDRSFKIWNAS---------------N--------YKCLESVN------------K------- 180 (357)
Q Consensus 145 v~~~~~~~--~~l~~~~~dg~i~iwd~~---------------~--------~~~~~~~~------------~------- 180 (357)
|.+++|+| ..|+..+.++++.+.+-. . |+.-.+|. .
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 99999999 888888888888876411 0 11111110 0
Q ss_pred ----cccccEEEEEEecCC-eEEEEeC------CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 181 ----AHEDAVNAVVVSDNG-VVYTGSA------DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 181 ----~~~~~v~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.....-..++|-.|| ++++.+- -..+|+|+-+ +.....-..-.+--.+++|-|.|+++
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-----------G~L~stSE~v~gLe~~l~WrPsG~lI 271 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-----------GELQSTSEPVDGLEGALSWRPSGNLI 271 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-----------ceEEeccccCCCccCCccCCCCCCEE
Confidence 022345678899999 4665553 2578999854 22222222222333578999999999
Q ss_pred EEEec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec-CCcC
Q 038568 250 FSGGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE-GHEK 323 (357)
Q Consensus 250 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~ 323 (357)
|+.-. ...|.+|.-+.-+.-...-.+......|..+.|+.+ .||..-.|. |.+|-..+-. +-....+. ....
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~ 349 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSE 349 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCC
Confidence 88765 345777765432221111122245567899999887 777766555 9999887753 22222332 2233
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+..+.|+|... ..|.....+|.+..
T Consensus 350 ~~~~~~Wdpe~p------~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 350 SVNFVKWDPEKP------LRLHVLTSNGQYEI 375 (928)
T ss_pred CCCceEECCCCC------CEEEEEecCCcEEE
Confidence 455699999765 24555555555544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-05 Score=63.79 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=123.7
Q ss_pred EEEEec-Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe-c
Q 038568 77 SITFHI-TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK-Q 152 (357)
Q Consensus 77 ~l~~~~-~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 152 (357)
+..|.+ ++ +++--..+.|..|+..+++... +. ... ...+++. +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~-------------------------------~~~-~~G~~~~~~ 50 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID-------------------------------LPG-PNGMAFDRP 50 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE-------------------------------SSS-EEEEEEECT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee-------------------------------cCC-CceEEEEcc
Confidence 567887 44 4455567889999988765321 11 111 5666666 5
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhccc---c-ccccEEEEEEecCCeEEEEeCC---------CeEEEEEcccccccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVNK---A-HEDAVNAVVVSDNGVVYTGSAD---------GRIRVWERSVVDHNK 218 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~ 218 (357)
..++.+...+ +.++|..+++....... . .....+.+++.|+|.|..+... |.|..++..
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------ 123 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------ 123 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------
Confidence 7777777655 55559888754433311 1 4567889999999965554432 445555543
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEecccCCc-ee---eeeeccCCccceEEEeec--Cce
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWERERDHR-MV---FAEALWGHTGALLCLINV--GDL 291 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~---~~~~~~~~~~~v~~~~~~--~~~ 291 (357)
.+ .......-...+.|+|+|+++.|+ +-+..+.|..+++..... +. .+..+....+..-.++.+ +++
T Consensus 124 -----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 124 -----GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp -----SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred -----Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 11 122222345568999999998776 556788899999974432 21 122222222234455555 446
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSS 335 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 335 (357)
.++....+.|.+++.+ + +.+..+......+++++|. ++..
T Consensus 198 ~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEEECCCCC
Confidence 6666678899999988 5 3344444444579999995 4433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=80.78 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=92.2
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-----hhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-----KCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~ 211 (357)
..+.|.++.|.. ++++.|+.+|.|..+|++.. .+...+ -|...|+++.... ++ +|++.+.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 456788888887 89999999999999999864 334444 6888999988776 44 6999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEE--EEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNAL--ALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
+..+ ..+-+..+.+|-..-..+ ...+....+++++.|-..|||.++.+..+.
T Consensus 329 R~~K-------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 329 RATK-------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhh-------cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 8322 122467778886544333 345567789999999999999999887543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-06 Score=66.98 Aligned_cols=145 Identities=11% Similarity=0.094 Sum_probs=107.6
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCC-eEEEEEccccccccccccce
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADG-RIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~ 224 (357)
.+..+ ++++..|. |...+.+...+-.++ .++...|.-..+.-++ .++.|..|| .+-++|.+ .
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-----------~ 391 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-----------G 391 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-----------C
Confidence 34444 77777775 677787766554443 3566667777776655 588888888 89999987 2
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC---
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR--- 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg--- 299 (357)
..+..+...-+.|.++..+|+|++++++.....|.+.|++++... ..-....+-|+.+.|+++ ++|-+--+|
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee---EecccccceeEEEEEcCCceeEEEecCcceee
Confidence 234455566788999999999999999999999999999988743 222345677899999987 777776665
Q ss_pred -eEEEeeCCCCc
Q 038568 300 -TVRIWQRGKEN 310 (357)
Q Consensus 300 -~i~vw~~~~~~ 310 (357)
.|+++|+..++
T Consensus 469 q~Iklydm~~~K 480 (668)
T COG4946 469 QSIKLYDMDGGK 480 (668)
T ss_pred eeEEEEecCCCe
Confidence 68999998863
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=81.18 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 71 SSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 71 ~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
....++|++++...|+-|+.+|.+++.+....- ...+ .|+.. ..
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~-------------------------------~~s~~----~~ 81 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF-------------------------------DHSSS----IL 81 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc-------------------------------ccccc----cc
Confidence 345677888888789999999999999986442 1111 22222 11
Q ss_pred ecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC------CeEEEEeCCCeEEEEEccccccccccccce
Q 038568 151 KQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN------GVVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 151 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
...++++|+.||+|.|-.+-+.+...++ ....++.+++++|+ +++++|+.-| +.++.-+-. ..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--------gn 150 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--------GN 150 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh--------cC
Confidence 1289999999999999999888877766 67789999999998 2599999988 777764411 11
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC---ccceEEEeecCc-eEEEecCCCe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH---TGALLCLINVGD-LLASGSADRT 300 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~-~l~~~~~dg~ 300 (357)
.....+....++|.++.|. |+++|=++.+| |+|||..+.+.+..+...... ...-..+.|.++ .|+.| ..-+
T Consensus 151 k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~ 226 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDS 226 (846)
T ss_pred ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCe
Confidence 1111455667899999996 66888888888 999999887755433322111 111244677777 45554 4556
Q ss_pred EEEeeCCC
Q 038568 301 VRIWQRGK 308 (357)
Q Consensus 301 i~vw~~~~ 308 (357)
|+|..++.
T Consensus 227 v~i~~I~~ 234 (846)
T KOG2066|consen 227 VKICSIKK 234 (846)
T ss_pred EEEEEEec
Confidence 88888873
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-06 Score=64.17 Aligned_cols=205 Identities=15% Similarity=0.160 Sum_probs=121.2
Q ss_pred cceEEEeeCCceEEEeccCCcc-ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLNEINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
|++||.--+..|.|=...++.. .+.+.+........=..++|+||. ||.+...|+|+++|+...... .+....
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--- 84 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--- 84 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc---
Confidence 7777776544777766633322 223333322234455789999998 888888999999999864322 221110
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--------CeEEEEecCCeEEEEEcCcc-----hhhhhc--cc
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--------GLMYSVSWDRSFKIWNASNY-----KCLESV--NK 180 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~-----~~~~~~--~~ 180 (357)
.. . ..-...|..+.|.+ ..|+.-..+|.++-|-+..+ +....+ ..
T Consensus 85 ~~-----~---------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 85 SF-----P---------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred cc-----C---------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 00 0 02245666666655 26777778888888776332 122222 13
Q ss_pred cccccEEEEEEecCC-eEEEEe-CCC----------eEEEEEcccccccc--------cc--cc-ceee---e-----eE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGS-ADG----------RIRVWERSVVDHNK--------ER--KS-RHML---V-----TT 229 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~-~d~----------~i~i~d~~~~~~~~--------~~--~~-~~~~---~-----~~ 229 (357)
.....|.++.++|.. .|++|+ ... -+..|.+-....-- .. .. .... . ..
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 346789999999986 444444 322 35566654221110 00 00 0000 0 01
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.......|..|..+|||..|++...+|.|.+|++-+-+
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11235679999999999999999999999999997554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-05 Score=62.12 Aligned_cols=212 Identities=16% Similarity=0.101 Sum_probs=126.7
Q ss_pred EEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEe-cCc-eEEeecCCeEEEEecCCccceee
Q 038568 34 CLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH-ITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 34 ~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
+.+|. +.++++--.. .|..|+. .+++. ..+. ... ...+++. +++ |+.+... .+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~-~~~~----~~~-~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEV-EVID----LPG-PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEE-EEEE----SSS-EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeE-EEEe----cCC-CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEE
Confidence 45666 5566666566 9999998 66443 3333 222 6777777 666 7666664 456669888754433
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC--------CeEEEEEcCcchhhhh
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD--------RSFKIWNASNYKCLES 177 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------g~i~iwd~~~~~~~~~ 177 (357)
...... .......+++++.+ ++.++.... |.|..++.. ++...
T Consensus 76 ~~~~~~-------------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~- 128 (246)
T PF08450_consen 76 ADLPDG-------------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV- 128 (246)
T ss_dssp EEEETT-------------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-
T ss_pred eeccCC-------------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-
Confidence 332110 01345678899999 444443332 557777766 44322
Q ss_pred ccccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 178 VNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+ ...-...+.|+|+|++. +++-+..+.|..+++...... -........+....+..-.+++..+|++.++....
T Consensus 129 ~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 129 V-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE---LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp E-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC---EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred E-ecCcccccceEECCcchheeecccccceeEEEeccccccc---eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 2 23455678999999993 456677888999998621110 00112222233333457889999999988888889
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
+.|.++|.+ ++....+.. ....+++++|.
T Consensus 205 ~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fg 233 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIEL---PVPRPTNCAFG 233 (246)
T ss_dssp TEEEEEETT-SCEEEEEE----SSSSEEEEEEE
T ss_pred CEEEEECCC-ccEEEEEcC---CCCCEEEEEEE
Confidence 999999988 664433332 22367888884
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.4e-06 Score=62.47 Aligned_cols=186 Identities=11% Similarity=0.134 Sum_probs=108.6
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc------ccccccEEEEEEecCC-------eEEEEeCCCeEE
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN------KAHEDAVNAVVVSDNG-------VVYTGSADGRIR 207 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~-------~l~~~~~d~~i~ 207 (357)
..=..++|+| .+||.+...|+|+++|+.. ..+..+. ......|..+.|.+.. .|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3456789999 8899999999999999864 3333332 1223566677665422 477888888888
Q ss_pred EEEccccccccccccceeeeeE--eec-cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE
Q 038568 208 VWERSVVDHNKERKSRHMLVTT--LVK-HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284 (357)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 284 (357)
-|-+..... ........ +.. +...|.++.++|..++|++|+.... +++. -......+++
T Consensus 123 Sy~vs~gt~-----q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------s~a~~~GLta 184 (282)
T PF15492_consen 123 SYLVSVGTN-----QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------SKASSCGLTA 184 (282)
T ss_pred eEEEEcccC-----CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------ccccccCceE
Confidence 887642110 11222222 222 3568999999999888887765332 0000 0011122222
Q ss_pred Eeec---CceE-EEecCCCe------EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 285 LINV---GDLL-ASGSADRT------VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 285 ~~~~---~~~l-~~~~~dg~------i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
...- |-+. ++...|+. -.+|.+-+. +...........|..|..+||+. .||+...+|.|.
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~-------~La~ih~sG~ls 254 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGS-------LLACIHFSGSLS 254 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCCCC-------EEEEEEcCCeEE
Confidence 2221 2222 22222221 123333321 11222223456799999999999 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+|+
T Consensus 255 LW~ 257 (282)
T PF15492_consen 255 LWE 257 (282)
T ss_pred EEe
Confidence 996
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-05 Score=67.24 Aligned_cols=253 Identities=12% Similarity=0.115 Sum_probs=125.2
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc---cceeeeecCCCeEEEec----------cccccc
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK---DRLIRSVLPNNYVTVRR----------HKKRLW 138 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~ 138 (357)
.|+.+.|.++. |+.+...|.|.||.+...+....-...+... .++.....+.....+.. .....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999875 9999999999999987654332000000000 00000001111111111 111223
Q ss_pred ccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhc-------cccccccEEEEEEe-----cCC----eEEEEe
Q 038568 139 LEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESV-------NKAHEDAVNAVVVS-----DNG----VVYTGS 201 (357)
Q Consensus 139 ~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~-----~~~----~l~~~~ 201 (357)
....++|++++.+. .+++.|..+|.+.|.|++....+..- .......++++.|. .|+ .+++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 45578999999999 99999999999999999876655442 12234567888886 244 389999
Q ss_pred CCCeEEEEEccccccccccccceeeeeEeeccccceeEEE-EecC-----------------C---CEEEEEecCCeEEE
Q 038568 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA-LNGD-----------------G---SLLFSGGCDRWIVV 260 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~~~~dg~i~v 260 (357)
..|.+.+|.+.... .+....+.......+.++|..+. ++.+ + .-+++...+..+++
T Consensus 163 n~G~v~~fkIlp~~---~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 163 NSGNVLTFKILPSS---NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp TTSEEEEEEEEE-G---GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred CCCCEEEEEEecCC---CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999885211 11111122222234556665554 3211 1 12344445677999
Q ss_pred EecccCCceeeeeeccCCccceEEEee-------cCceEEEecCCCeEEEeeCCCCcceeeeeeecC----CcCceEEEE
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLIN-------VGDLLASGSADRTVRIWQRGKENCYRCMAFLEG----HEKPVKSLV 329 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----h~~~v~~~~ 329 (357)
+..-+.+... +.+ ........+.+ .+..|++-..+|.|+++.+..-+ .+...+- ....+....
T Consensus 240 ~~~~~~k~~~--K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk---ei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 240 FKPPKSKGAH--KSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK---EIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp E-TT---EEE--EE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-E
T ss_pred EeCCCCcccc--eee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch---HhhcccCCCccccccccccE
Confidence 9988766422 222 22122222222 23388888899999999998753 3333322 223455566
Q ss_pred EeeCCC
Q 038568 330 AISSSS 335 (357)
Q Consensus 330 ~~~~~~ 335 (357)
++++|.
T Consensus 314 is~~Gd 319 (395)
T PF08596_consen 314 ISRNGD 319 (395)
T ss_dssp E-TTS-
T ss_pred ECCCCC
Confidence 777776
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-06 Score=68.55 Aligned_cols=275 Identities=9% Similarity=0.112 Sum_probs=150.3
Q ss_pred CccceeEEEEe-cceEEEeeCC-c-----------------eEEEeccCCccccceeccccCCCCceEEEEEecCc---e
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-E-----------------INVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---I 85 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~-----------------i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l 85 (357)
|...-.++.++ |..|+..+.- . +++.+. .+.+..+.+.+ +...|.+++|+|.. +
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~-~~fkssq~lp~---~g~~IrdlafSp~~~GLl 209 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLES-HDFKSSQILPG---EGSFIRDLAFSPFNEGLL 209 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEecc-CCcchhhcccc---cchhhhhhccCcccccee
Confidence 55555666666 5555554432 2 344444 44444555555 88899999999854 7
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDR 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg 162 (357)
..++.+.+|+|.|+++........ .+ ..+++++|.- ++++.|..+|
T Consensus 210 ~~asl~nkiki~dlet~~~vssy~------------------------------a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 210 GLASLGNKIKIMDLETSCVVSSYI------------------------------AY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred eeeccCceEEEEecccceeeehee------------------------------cc-CCceeeeeccCCcceeEEeccCc
Confidence 889999999999999875443332 33 7899999987 8999999999
Q ss_pred eEEEEEcCcchh-hhhcc-ccccccEEEEEEecC------CeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 163 SFKIWNASNYKC-LESVN-KAHEDAVNAVVVSDN------GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 163 ~i~iwd~~~~~~-~~~~~-~~~~~~v~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
.|.+||++..+- +..+. .....+|..++.-+. +-++++... .+..|++. .......++..+ +..
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~------~s~~~~p~vlel-e~p 330 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIV------FSAECLPCVLEL-EPP 330 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhh------ccccCCCccccc-CCC
Confidence 999999986542 22221 123345555443322 223333322 35566654 111112222222 234
Q ss_pred cceeEEEEecCCCE-EEEEecCC------eEEE-EecccCCceeeee-eccC------Cc-cceEEEeecCc-eEEEecC
Q 038568 235 STVNALALNGDGSL-LFSGGCDR------WIVV-WERERDHRMVFAE-ALWG------HT-GALLCLINVGD-LLASGSA 297 (357)
Q Consensus 235 ~~v~~~~~~~~~~~-l~~~~~dg------~i~v-wd~~~~~~~~~~~-~~~~------~~-~~v~~~~~~~~-~l~~~~~ 297 (357)
+...++.+++..+. |++.-.+. .|.. -|..++..+...+ ...+ +. ..+... ...+ .+..+++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~-~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV-EDNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc-ccccEEEEecCC
Confidence 55666666664443 33332211 1111 0111111110000 0000 11 111111 1123 5667777
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+.+.+||..+. +.+..+.- +.+|.+++...... +.+|++-. |..++||
T Consensus 410 tn~lil~D~~s~---evvQ~l~~-~epv~Dicp~~~n~-----~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSF---EVVQTLAL-SEPVLDICPNDTNG-----SSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchh---heeeeccc-CcceeecceeecCC-----cchhhhee-cceEEEE
Confidence 899999999987 55555543 47888887655421 23676665 4466665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-05 Score=66.88 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=140.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
....|+. ....+...-.. ..-.=+-+.|+|-+ |+|-.. .-|.+|--.+-...+.+
T Consensus 191 ~svfwN~-~~n~p~~ie~R---enWTetyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF------------------ 247 (698)
T KOG2314|consen 191 VSVFWNS-KFNEPSLIEER---ENWTETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRF------------------ 247 (698)
T ss_pred eEEEccc-cCCchhhhhhh---hcceeeeEEecCCceEEEEEec-cceeeecCccHHHHHhc------------------
Confidence 3566776 33222222221 22344678999987 666555 45889975544333332
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEec-----------CCeEEEEEcCcchhhhhccc--cccccEEEEEE
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----------DRSFKIWNASNYKCLESVNK--AHEDAVNAVVV 191 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~ 191 (357)
.| ..|.-+.|+| ++|++-+. ...++|||+.+|.....+.. .....-.-..|
T Consensus 248 -------------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 248 -------------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW 313 (698)
T ss_pred -------------cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe
Confidence 23 3477888888 88888764 25799999999999888832 12222335678
Q ss_pred ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE--------------------------------
Q 038568 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA-------------------------------- 239 (357)
Q Consensus 192 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------------------- 239 (357)
+.|++.++.-....|.||+...... +..-.-.-..|..
T Consensus 314 S~DdKy~Arm~~~sisIyEtpsf~l----------ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~ 383 (698)
T KOG2314|consen 314 SHDDKYFARMTGNSISIYETPSFML----------LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK 383 (698)
T ss_pred ccCCceeEEeccceEEEEecCceee----------ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence 8888655555557888887652111 0000001112222
Q ss_pred ---------------EEEecCCCEEEEEe----------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e-
Q 038568 240 ---------------LALNGDGSLLFSGG----------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L- 291 (357)
Q Consensus 240 ---------------~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~- 291 (357)
|.|-.+|.+|+.-- .-..+.|+.++....+... ..-...+..++|.|. .
T Consensus 384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~---velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV---VELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee---eecchheeeeeeccCCCeE
Confidence 33444555554321 1112334444432211111 123456788888775 3
Q ss_pred -EEEecC-CCeEEEeeCC-CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC---CCCeEEecC
Q 038568 292 -LASGSA-DRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS---LNGEIKVWD 357 (357)
Q Consensus 292 -l~~~~~-dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~---~dg~v~~wd 357 (357)
+++|.. ..++.+|.++ +...+..+..+.. ...+.+.|+|.|+ +++.+. ..|.+.++|
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~-------fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR-------FVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc-------EEEEEEecccccceEEEe
Confidence 333332 4679999988 5545566666554 5678999999998 776654 456666665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-07 Score=78.00 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=105.9
Q ss_pred cccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc
Q 038568 142 WDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 142 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
...++|++++..+++-|+-+|.|++.+... .....+ .|... ..+| ++++|+.||+|.+..+-
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~-------- 101 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG-NPKTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLF-------- 101 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCC-cccccc--ccccc------ccCCceEEEecCCCcEEEeecc--------
Confidence 456788888889999999999999999753 332222 33332 4456 79999999999998876
Q ss_pred ccceeeeeEeeccccceeEEEEecC-----CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGD-----GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
.......+ .-..++.+++++|+ .+.+++|+.-| +.++.-+--...... .+....++|.++.|.++++|=+
T Consensus 102 --~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWa 176 (846)
T KOG2066|consen 102 --TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWA 176 (846)
T ss_pred --CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEe
Confidence 12222222 24568899999996 56899999888 777764422111111 3445678999999999999999
Q ss_pred cCCCeEEEeeCCCCc
Q 038568 296 SADRTVRIWQRGKEN 310 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~ 310 (357)
+.+| |++||+.+.+
T Consensus 177 nd~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQ 190 (846)
T ss_pred cCCC-cEEEeccccc
Confidence 9998 8999998874
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=70.76 Aligned_cols=202 Identities=10% Similarity=0.207 Sum_probs=130.6
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCc-eEEEEEecCc--eEEeecCC-----eEEEEecCC
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS-VKSITFHITK--IFTAHQDC-----KIRVWKITA 101 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~--l~~~~~d~-----~i~vwd~~~ 101 (357)
.|+|+.-++..+|.|+.+ .|.+.+- ..+.++.|+. +... |..+-..... |++.+.|+ .++||+++.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa---~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQA---YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc--cceeeehhee---cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 778777778899999999 8888874 5566677776 6666 4444444442 77777665 489999975
Q ss_pred ccc---eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcC--cch-
Q 038568 102 SRQ---HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS--NYK- 173 (357)
Q Consensus 102 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~--~~~- 173 (357)
.+. ..++.... +.+.. ......++.+++.+. +.++.|-.+|.|..+.-. ..+
T Consensus 102 ~~~n~sP~c~~~~r-----------------i~~~~---np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHR-----------------IFTIK---NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred cCCCCCcceeeeee-----------------eeccC---CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 431 11111000 00000 012356788888888 899999999999988422 111
Q ss_pred hhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
....+......+|+.+.+..++. ++-...-..|.+|.+. ........+..|..++.|..+++....++++
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~---------gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS---------GRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec---------CCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 11122245678999999998884 2333344678999886 1223344577788899999999866556666
Q ss_pred ecCCeEEEEecccCC
Q 038568 253 GCDRWIVVWERERDH 267 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~ 267 (357)
+.. -+.+|+....+
T Consensus 233 ~~e-~l~fY~sd~~~ 246 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGRG 246 (933)
T ss_pred cCc-eEEEEcCCCcc
Confidence 544 49999988544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-08 Score=86.58 Aligned_cols=193 Identities=11% Similarity=0.170 Sum_probs=131.7
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~ 87 (357)
++..++++. |+..-+|++|+ .+.|++|+.. .|+++++ .+|........ |..+|+-+.-+-++ |.+
T Consensus 1091 Fr~w~~frd-----~~~~fTc~afs~~~~hL~vG~~~Geik~~nv-~sG~~e~s~nc---H~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1091 FRSWRSFRD-----ETALFTCIAFSGGTNHLAVGSHAGEIKIFNV-SSGSMEESVNC---HQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred cccchhhhc-----cccceeeEEeecCCceEEeeeccceEEEEEc-cCccccccccc---cccccccccccCCcceeeee
Confidence 344455554 99999999999 7899999988 9999999 99999888888 99999999988776 444
Q ss_pred eecCC-eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 88 AHQDC-KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 88 ~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
++... -..+|++.+.- .... ....-.++.|+. ..-+.|......
T Consensus 1162 ss~S~PlsaLW~~~s~~--~~~H-------------------------------sf~ed~~vkFsn~~q~r~~gt~~d~a 1208 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG--GPRH-------------------------------SFDEDKAVKFSNSLQFRALGTEADDA 1208 (1516)
T ss_pred ccccCchHHHhcccccc--Cccc-------------------------------cccccceeehhhhHHHHHhcccccce
Confidence 43333 57889986521 1111 123445777877 333444444678
Q ss_pred EEEEcCcchhhhhccc---cccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 165 KIWNASNYKCLESVNK---AHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
.+||+.++.++.++.. .....-++..|+|+..|+- .||. +||++ ..+.+..+...... -.=.
T Consensus 1209 ~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR----------~~~aIh~FD~ft~~-~~G~ 1273 (1516)
T KOG1832|consen 1209 LLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVR----------IPEAIHRFDQFTDY-GGGG 1273 (1516)
T ss_pred EEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeec----------cHHHHhhhhhheec-cccc
Confidence 9999999998887522 2223347788999886543 3553 69998 22334444333321 2235
Q ss_pred EecCCCEEEEEecCCeEEEEecccCCc
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
|+|.|..++.-++ |||+++-+.
T Consensus 1274 FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred ccCCCceEEeech-----hhhhHHHHH
Confidence 8999998887653 899987653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-07 Score=73.37 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=137.4
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...|+.+.-.-.. +.+++.||.++.|.-..-.....+..+ ..|...|.+++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhF---------------------------raHL~~I~sl~ 60 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHF---------------------------RAHLGVILSLA 60 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhh---------------------------HHHHHHHHhhh
Confidence 88888888777544 999999999999987653434444333 27778888887
Q ss_pred Eec--CeEEEEec-CCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEE-EeCCCeEEEEEcccccccccccc
Q 038568 150 VKQ--GLMYSVSW-DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYT-GSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 150 ~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
.+- -++.+.+. |..++++|+.+...+..+....-....+...++.. .+++ ...++.+.++|-. ..
T Consensus 61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--------~d 132 (558)
T KOG0882|consen 61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--------GD 132 (558)
T ss_pred ccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--------CC
Confidence 777 56667666 99999999987665544421111111122223332 2333 3457889999965 12
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee------------eeeccCCccceEEEeecCc
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF------------AEALWGHTGALLCLINVGD 290 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~ 290 (357)
..+....-.-|..+|..+.+++-+..+++....|.|.-|.....-+... ...+........++.++++
T Consensus 133 ~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 133 FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2344455567899999999999999999999999999999873111000 0011122344566666655
Q ss_pred --eEEEecCCCeEEEeeCCCCc
Q 038568 291 --LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+.+-+.|..|+++++.+++
T Consensus 213 g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cCcccccCcccEEEEEEeccch
Confidence 88888999999999998875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=71.07 Aligned_cols=209 Identities=15% Similarity=0.262 Sum_probs=127.2
Q ss_pred ceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccccc-EEEEEEec
Q 038568 74 SVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA-VSDLVVKQ 152 (357)
Q Consensus 74 ~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 152 (357)
.|.|+.-+...++.|+.+|.|.+.+-.- +.+..+. .+... |..+....
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fq---------------------------a~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQ---------------------------AYEQSIVQFLYILN 75 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc----eeeehhe---------------------------ecchhhhhHhhccc
Confidence 5555443333499999999887776331 1112221 33333 33443333
Q ss_pred --CeEEEEecCC-----eEEEEEcCcc------hhh---hhc--c-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 153 --GLMYSVSWDR-----SFKIWNASNY------KCL---ESV--N-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 153 --~~l~~~~~dg-----~i~iwd~~~~------~~~---~~~--~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
++|++.+.|+ .+++||++.- +++ ..+ . .....++.+++++.+- .+++|-.+|.|..+.-.
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 5777777665 4999998643 223 111 1 1245678889998876 48999999999998644
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-e
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-L 291 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 291 (357)
. .+..+....-......+|+.+++..++..++-...-..|.+|.+. ++. .....+..|...+.|.++++. .
T Consensus 156 i------~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 156 I------LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred c------hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCc
Confidence 1 111222222233456899999999988863333445569999998 433 244556678888999998876 3
Q ss_pred -EEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 292 -LASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 292 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+++++.. .+.+|+.... ..+...-.+|...
T Consensus 228 qfIca~~e-~l~fY~sd~~--~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 228 QFICAGSE-FLYFYDSDGR--GPCFAFEVGEKKE 258 (933)
T ss_pred cEEEecCc-eEEEEcCCCc--ceeeeecCCCeEE
Confidence 6655544 5999998754 1333332255543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-05 Score=63.31 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=66.3
Q ss_pred EEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 165 KIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 165 ~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
.+|++...+ .+....-..+..+.+.+++|+. +++.|+.||.|.+||... .........-.++.++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~------------~~t~~~ka~~~P~~ia 306 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR------------GVTLLAKAEFIPTLIA 306 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC------------CeeeeeeecccceEEE
Confidence 456654433 2222224667889999999988 699999999999999761 1222223445678999
Q ss_pred EecCCCEEEEEecCCeEEEEeccc
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
|+|+|.++++|+..|.+.+||+.-
T Consensus 307 WHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 307 WHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcCCCcEEEEEcCCceEEEEEeec
Confidence 999999999999999999999863
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-05 Score=64.75 Aligned_cols=246 Identities=10% Similarity=0.105 Sum_probs=142.9
Q ss_pred EEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE
Q 038568 51 NVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129 (357)
Q Consensus 51 ~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
.+|+. .+...-..+.. ..-++..++|+|.+ ++....-..|.+|.-........+.
T Consensus 15 ~f~~~-~s~~~~~~~~~---~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------------------- 70 (561)
T COG5354 15 VFWNS-QSEVIHTRFES---ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-------------------- 70 (561)
T ss_pred EeecC-ccccccccccc---cCcchhheeecCcchheehhhccceEEccccchhheeeee--------------------
Confidence 44555 55555555554 66789999999988 4444444669999877655332221
Q ss_pred EecccccccccccccEEEEEEec--CeEEEEecCC---------------eEEEEEcCcchhhhhcccccccc--EE-EE
Q 038568 130 VRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR---------------SFKIWNASNYKCLESVNKAHEDA--VN-AV 189 (357)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~--v~-~~ 189 (357)
...|..+.|+| ++|.+-+..+ .+.+||+.++..+..+ .....+ .. -+
T Consensus 71 ------------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~ 137 (561)
T COG5354 71 ------------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVL 137 (561)
T ss_pred ------------cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCccccccee
Confidence 24567777777 6666665433 4999999999998888 333333 33 57
Q ss_pred EEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEE-----EecCCeEEEEe
Q 038568 190 VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFS-----GGCDRWIVVWE 262 (357)
Q Consensus 190 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~vwd 262 (357)
.|+-+..+++--....++++++. ... ...+...++ ...+....|+|.+ ..|+. ...++++++|.
T Consensus 138 k~s~~D~y~ARvv~~sl~i~e~t-~n~------~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 138 KFSIDDKYVARVVGSSLYIHEIT-DNI------EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeecchhhhhhccCeEEEEecC-Ccc------ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 77776632222244678999863 110 111111221 2557778888853 34443 35678899999
Q ss_pred cccCCceeeeeeccCCccceEEEeec--CceEEE----ec-------CCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINV--GDLLAS----GS-------ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~----~~-------~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
+..+..+. ...+..-.+ ..+.|. +++|+. -. .+..++|++++.. .+.....-.++|...+
T Consensus 209 Ip~~s~l~-tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~----~i~V~~~~~~pVhdf~ 281 (561)
T COG5354 209 IPKNSVLV-TKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER----SIPVEKDLKDPVHDFT 281 (561)
T ss_pred ccCCCeee-eeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc----ccceeccccccceeee
Confidence 88555332 222222222 223333 332221 11 2356888888842 2333335578999999
Q ss_pred EeeCCCCCCCCeEEEEE--cCCCCeEEec
Q 038568 330 AISSSSSASNGIVSIGS--GSLNGEIKVW 356 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s--~~~dg~v~~w 356 (357)
|.|.++ .+++ |-.+-.+.++
T Consensus 282 W~p~S~-------~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 282 WEPLSS-------RFAVISGYMPASVSVF 303 (561)
T ss_pred ecccCC-------ceeEEecccccceeec
Confidence 999987 4443 3355555544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00017 Score=54.95 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=74.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEE-ecCceEEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
..+++.|+.. .+.--|. .++.....-. -...|.+-+. ..|.++.|+..|.+.+.+.+++++...+......
T Consensus 23 kT~v~igSHs~~~~avd~-~sG~~~We~i----lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDP-QSGNLIWEAI----LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecC-CCCcEEeehh----hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 5677777777 7777888 7766554332 3344444333 3556999999999999999999776665543211
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
..-..++++...+..|+.|+..+..|.++..++...
T Consensus 96 --------------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 96 --------------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred --------------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 111234444588999999999999999988877765
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0002 Score=62.94 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=109.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccC---CCCce--EEEEEec-CceEEeecCCeEEEEecCCccceeeeeec
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLS---SSGSV--KSITFHI-TKIFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~---~~~~v--~~l~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
+..++.++.+ .+.-.|. .+++.+-.+..... ....+ ..++... +.++.++.++.|.-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 6677778878 9999999 88887776653110 00011 1123333 55888889999999999998865544322
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccE-EEEEEecCeEEEEe---------cCCeEEEEEcCcchhhhhcccc
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV-SDLVVKQGLMYSVS---------WDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
.... ....+ ....+....++.++ .+|.+..+|..+++.+..+...
T Consensus 140 ~~~~-------------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~ 194 (488)
T cd00216 140 DQVP-------------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT 194 (488)
T ss_pred CCcC-------------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence 1100 00000 01111124444443 4678999999999887776321
Q ss_pred ccc-------------------cE-EEEEEec-CCeEEEEeCCC------------------eEEEEEcccccccccccc
Q 038568 182 HED-------------------AV-NAVVVSD-NGVVYTGSADG------------------RIRVWERSVVDHNKERKS 222 (357)
Q Consensus 182 ~~~-------------------~v-~~~~~~~-~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~ 222 (357)
... .+ ...++.+ .++++.++.++ .|.-+|.. +++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~------tG~~ 268 (488)
T cd00216 195 EPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD------TGKV 268 (488)
T ss_pred CCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC------CCCE
Confidence 110 01 1234443 34677777665 68888877 2222
Q ss_pred ceeeeeEeeccc--------cce-eEEEEecCCC---EEEEEecCCeEEEEecccCCceeee
Q 038568 223 RHMLVTTLVKHR--------STV-NALALNGDGS---LLFSGGCDRWIVVWERERDHRMVFA 272 (357)
Q Consensus 223 ~~~~~~~~~~~~--------~~v-~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 272 (357)
..... ...+. .++ ..+. .-++. .++.++.+|.+..+|.++++.+...
T Consensus 269 ~W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 269 KWFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 22211 11111 111 1110 01333 6788889999999999999865443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00062 Score=58.18 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 277 GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.....+.+++++++ .++.|+.||.|.+||...+ +.....+.-..+.++|+|++. ++++|+.-|.+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~ga-------i~~V~s~qGelQ 324 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGA-------IFVVGSEQGELQ 324 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCc-------EEEEEcCCceEE
Confidence 46677888888876 9999999999999999875 222223445678999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 325 ~FD 327 (545)
T PF11768_consen 325 CFD 327 (545)
T ss_pred EEE
Confidence 998
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-08 Score=81.68 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=125.9
Q ss_pred CCceEEEEEec--Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 72 SGSVKSITFHI--TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 72 ~~~v~~l~~~~--~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
...+.|+++.- +. ++.|..+|.|.+-.++...... - .+..++..+.++
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-~---------------------------E~tp~~ar~Ct~ 107 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-A---------------------------EVTPGYARPCTS 107 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-c---------------------------eecccccccccc
Confidence 44566777653 33 8888899999998876543220 0 111278889999
Q ss_pred EEEec---CeEEEEec----CCeEEEEEcCcc--hhhh--hccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccc
Q 038568 148 LVVKQ---GLMYSVSW----DRSFKIWNASNY--KCLE--SVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 148 ~~~~~---~~l~~~~~----dg~i~iwd~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~ 215 (357)
++|++ +.||+|-. |..+.|||+.++ .+.. .+.........+++|..+.+ +++|.....+.++|++.
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-- 185 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-- 185 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--
Confidence 99999 67777643 567999999876 2222 22122344566888887664 78888888999999981
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEe-cccCCceeeeeeccCC----ccceEEEeecC
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGH----TGALLCLINVG 289 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~----~~~v~~~~~~~ 289 (357)
.......-....+..+..+| .++++++-. ||.|.+|| .+.-+.+ +...... ...+..++|.|
T Consensus 186 ---------s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp--l~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 ---------SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP--LQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred ---------hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH--HHHHhhCCCCcccceeeEEecc
Confidence 11111112334567788888 777887765 99999999 4333321 1111111 22478889988
Q ss_pred c---eEEEecCC-CeEEEeeCC
Q 038568 290 D---LLASGSAD-RTVRIWQRG 307 (357)
Q Consensus 290 ~---~l~~~~~d-g~i~vw~~~ 307 (357)
. .+++...| ++|+++|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 6 66666654 789999985
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=63.46 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=62.8
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~ 100 (357)
|...|..++|+ ..++..++.+ +|+|.|+ ++...+..+.. + ..+.+++|.-|. |+.|-..|.|.|||++
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 89999999999 3478899999 9999999 88888888875 5 899999999664 9999999999999998
Q ss_pred Cccc
Q 038568 101 ASRQ 104 (357)
Q Consensus 101 ~~~~ 104 (357)
..+.
T Consensus 267 ~~~~ 270 (463)
T KOG1645|consen 267 QPEG 270 (463)
T ss_pred CCCc
Confidence 7654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00018 Score=66.28 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=120.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.+.|.++.|- ++-++.+..+ .|.+-|. ++.. +..... -...|.+++|+||. ++..+..+++.+-.- +-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~-et~~-~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDP-ETLE-LEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcc-cccc-eeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cc
Confidence 34689999998 6666666666 7777688 5532 333332 67899999999997 666666666655332 11
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcch-hhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK-CLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 180 (357)
..+......... ...+....+-|-. ..=+-|+ .|.....+....+ .+...
T Consensus 141 ~~i~E~~L~~d~-------------------------~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~-- 192 (1265)
T KOG1920|consen 141 EPIAEKPLDADD-------------------------ERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQI-- 192 (1265)
T ss_pred cchhcccccccc-------------------------ccccccceecccccceeeecc-hhhhcccccccccccccch--
Confidence 110000000000 0011111122211 1111111 1111111111100 01100
Q ss_pred cccccEEEEEEecCC-eEEEE----eCC-CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-
Q 038568 181 AHEDAVNAVVVSDNG-VVYTG----SAD-GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG- 253 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~----~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 253 (357)
...+.=+.+.|--|| ++++. ..+ +.|++||-+ +.+-..-....+--.+++|-|.|..+++-.
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------chhhcccCcccccccceeecCCCCeEeeeee
Confidence 122333568999999 45442 234 799999965 111111111222335789999999888754
Q ss_pred --cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE---ecCCCeEEEeeCCCC
Q 038568 254 --CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS---GSADRTVRIWQRGKE 309 (357)
Q Consensus 254 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~---~~~dg~i~vw~~~~~ 309 (357)
.|+.|.+|.-+.-+.-...-.+......+..++|+.+ .|++ ......|++|-+.+-
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3567999986643221122222233344888899866 6665 445556999987763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00022 Score=61.03 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=114.1
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
.......+.++|++ +++.+.||.-.++.....+. ...+.-...+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-----------------------------------k~~G~g~~~v 75 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-----------------------------------KAFGSGLSFV 75 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-----------------------------------EEEEE-SEEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-----------------------------------cccCceeEEE
Confidence 45567899999998 55557788888888432221 2234556778
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
|.+ +.+|+-..+++|.++.--+.+....+... ..+..|-. |.++....++.|.+||+. ..+.+.
T Consensus 76 w~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~~i~~yDw~----------~~~~i~ 140 (443)
T PF04053_consen 76 WSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSDFICFYDWE----------TGKLIR 140 (443)
T ss_dssp E-TSSEEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETTEEEEE-TT----------T--EEE
T ss_pred EecCccEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCCCEEEEEhh----------Hcceee
Confidence 888 88888888899999743344443444222 23333433 654444455699999998 456666
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC-----------CceeeeeeccCCccceEEEeecCceEEEecC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD-----------HRMVFAEALWGHTGALLCLINVGDLLASGSA 297 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 297 (357)
.+.. .+|..+.|++++.+++..+.+ .+.+++.+.. ..+.... .-...|.+..|.++.++-...
T Consensus 141 ~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d~fiYtT~ 214 (443)
T PF04053_consen 141 RIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVEDCFIYTTS 214 (443)
T ss_dssp EESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETTEEEEE-T
T ss_pred EEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcCEEEEEcC
Confidence 6653 248999999999999998866 4888776533 0111221 124567888888884444444
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
. .|+. +-.|+ ...+..+ ..++.=+...+..+ .+.....|+.|..+
T Consensus 215 ~-~lkY--l~~Ge-~~~i~~l---d~~~yllgy~~~~~-------~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 215 N-HLKY--LVNGE-TGIIAHL---DKPLYLLGYLPKEN-------RLYLIDRDGNVISY 259 (443)
T ss_dssp T-EEEE--EETTE-EEEEEE----SS--EEEEEETTTT-------EEEEE-TT--EEEE
T ss_pred C-eEEE--EEcCC-cceEEEc---CCceEEEEEEccCC-------EEEEEECCCCEEEE
Confidence 4 6766 33332 1223332 45677777777665 77777788777543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00021 Score=62.04 Aligned_cols=152 Identities=8% Similarity=0.092 Sum_probs=94.1
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.-+|++-++++++.|+.- .+++|+. ..++....-.+ +..+.+..+..+++. ++.|+..|.|.++.+..+.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R-~~~~~~~~~~~--~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNR-HTGEMRKLKNE--GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEec-Cchhhhccccc--CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 345555559999999988 9999998 55443332221 134445556666654 77888889999998876432222
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch----hhhhcccc
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK----CLESVNKA 181 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~ 181 (357)
...-+ .. ..|...|++++|++ ..+++|...|.|..-.+.+.. ..+.+ ..
T Consensus 114 ~~~t~--------------------~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~ 168 (726)
T KOG3621|consen 114 DYVTP--------------------CD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LS 168 (726)
T ss_pred eeecc--------------------cc----ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-ec
Confidence 21111 11 15889999999999 889999999999998887621 11112 33
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
....|..+.+.. ++|+++..-.. .+++.+
T Consensus 169 ~ds~IVQlD~~q-~~LLVStl~r~-~Lc~tE 197 (726)
T KOG3621|consen 169 EDSEIVQLDYLQ-SYLLVSTLTRC-ILCQTE 197 (726)
T ss_pred cCcceEEeeccc-ceehHhhhhhh-heeecc
Confidence 456666666543 34433333322 344444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.5e-07 Score=77.56 Aligned_cols=194 Identities=14% Similarity=0.216 Sum_probs=118.2
Q ss_pred ccceeEEEEe----cceEEEeeCC-ceEEEeccCCccc-cceeccccCCCCceEEEEEecC--c-eEEee----cCCeEE
Q 038568 29 HMIISCLAVH----NSLLYAASLN-EINVFDLISDYSH-VDTFSNDLSSSGSVKSITFHIT--K-IFTAH----QDCKIR 95 (357)
Q Consensus 29 ~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~--~-l~~~~----~d~~i~ 95 (357)
...+.|++.. ...+++|..+ .|-+-....+... .....+ +..++++++|++- . |++|- .|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~---~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG---YARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc---ccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 4457788776 3578888888 8888877332222 223333 8899999999984 2 55553 356799
Q ss_pred EEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 96 VWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 96 vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
|||+.+.-. ...... . .+......+++|.. +++.+|.....+.++|++.
T Consensus 133 Iwdi~s~ltvPke~~~f-s--------------------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLF-S--------------------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred ceecccccCCCcccccc-c--------------------------cccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 999987521 100000 0 01122334677766 7888898888999999983
Q ss_pred ch-hhhhccccccccEEEEEEec-CCeEEEEeCCCeEEEEE-ccccccccccccceeeeeEeecc----ccceeEEEEec
Q 038568 172 YK-CLESVNKAHEDAVNAVVVSD-NGVVYTGSADGRIRVWE-RSVVDHNKERKSRHMLVTTLVKH----RSTVNALALNG 244 (357)
Q Consensus 172 ~~-~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~ 244 (357)
.. .... -....+..+.+.| ..-.++...||.|.+|| .+. ...++..+... ...+..++|+|
T Consensus 186 s~~~~~s---vnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn---------ienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLDSVSS---VNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN---------IENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhh---hhhhhcccceecCCCCCceeccccCceeeccchhh---------hccHHHHHhhCCCCcccceeeEEecc
Confidence 22 2222 2334566677777 33234455599999999 431 11222222211 22488999999
Q ss_pred CCC-EEEEEe-cCCeEEEEecc
Q 038568 245 DGS-LLFSGG-CDRWIVVWERE 264 (357)
Q Consensus 245 ~~~-~l~~~~-~dg~i~vwd~~ 264 (357)
... .+++.. ..++|+.+|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 332 444444 46789999986
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00046 Score=59.15 Aligned_cols=168 Identities=5% Similarity=0.018 Sum_probs=93.3
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeec---CCeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.|.+=|. +. ...+.+.. . +.+..-.|+|++ ++..+. +..|.++|+.+++.....
T Consensus 170 ~l~~~d~-dg-~~~~~~~~---~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-------------- 229 (419)
T PRK04043 170 NIVLADY-TL-TYQKVIVK---G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-------------- 229 (419)
T ss_pred eEEEECC-CC-CceeEEcc---C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--------------
Confidence 6666665 43 33444442 3 377889999986 333333 356888898777543222
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec--Ce-EEEEecC--CeEEEEEcCcchhhhhccccccccEEEEEEecCC-e
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL-MYSVSWD--RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V 196 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 196 (357)
...+......|+| +. +++.+.+ ..|.++|+.+++. ..+ ..+........|+||| .
T Consensus 230 -----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~L-T~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 230 -----------------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQI-TNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred -----------------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEc-ccCCCccCccEECCCCCE
Confidence 1123344566888 33 3444434 4688888877653 333 2223223456799999 3
Q ss_pred EE-EEeCCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---------CeEEEEecc
Q 038568 197 VY-TGSADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---------RWIVVWERE 264 (357)
Q Consensus 197 l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~ 264 (357)
|+ +....+ .|.+.|+. .+. .+.+ ...+. ....|+|+|+.|+..... ..|.+.|+.
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~------~g~--~~rl-t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLN------SGS--VEQV-VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred EEEEECCCCCceEEEEECC------CCC--eEeC-ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 43 333344 46666665 111 1111 11111 124899999988776653 368888888
Q ss_pred cCCc
Q 038568 265 RDHR 268 (357)
Q Consensus 265 ~~~~ 268 (357)
++..
T Consensus 358 ~g~~ 361 (419)
T PRK04043 358 SDYI 361 (419)
T ss_pred CCCe
Confidence 7753
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00021 Score=59.27 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=111.8
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEec--------CCeEEEEeC----------CCeEEEEEccccccccccccc
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSD--------NGVVYTGSA----------DGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..|++.|..+.+.+..+.......+.+++... ..++++|.. .|.|.++++... ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cccceE
Confidence 36889998888877776545555566555432 224666643 289999999821 000112
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRI 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~v 303 (357)
.+.+... ...++|++++-- ++ .|+++ .++.|.+|++...+.+...... .....+.++...+++++.|.....+.+
T Consensus 79 l~~i~~~-~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 79 LKLIHST-EVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEE-EESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEEE-eecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhhee-cceEEEEEEeccccEEEEEEcccCEEE
Confidence 2233322 346889988866 34 44444 3578999999977733333333 233478888888999999999888998
Q ss_pred eeCCCC-cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 304 WQRGKE-NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 304 w~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.++.. .....+.. ......++++.+-++++ .++.+..+|.+.++
T Consensus 154 ~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~-------~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 154 LRYDEENNKLILVAR-DYQPRWVTAAEFLVDED-------TIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSS-------EEEEEETTSEEEEE
T ss_pred EEEEccCCEEEEEEe-cCCCccEEEEEEecCCc-------EEEEEcCCCeEEEE
Confidence 866542 22333332 23355689999987766 88899999998875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00048 Score=63.65 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=128.0
Q ss_pred CCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 72 SGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...|.++.|..+. ++.+...|.|.+-|.++... .... .-...|.+++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg------------------------------~vd~GI~aas 116 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVG------------------------------NVDNGISAAS 116 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeee------------------------------eccCceEEEe
Confidence 3689999999765 88888899999988776542 1221 3457899999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc-ccccceee
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK-ERKSRHML 226 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~ 226 (357)
|+| ..++..+..+++.+-+ .+..++...+. ...-.+.+.++.++....=.-+.-..+.... ......+.
T Consensus 117 wS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L-------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 117 WSPDEELLALITGRQTLLFMT-KDFEPIAEKPL-------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred ecCCCcEEEEEeCCcEEEEEe-ccccchhcccc-------ccccccccccceecccccceeeecchhhhccccccccccc
Confidence 999 7777777777776644 33444433210 1111222334444433321111111000000 00000000
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEe----cC-CeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEe---c
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGG----CD-RWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASG---S 296 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~---~ 296 (357)
..... -.+.=+++.|--||.++++.. .+ ..|+|||.+ +.. ...... ..+.-.+++|-| ..+++- .
T Consensus 189 ~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~--~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEP--VEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchh-hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCc--ccccccceeecCCCCeEeeeeecC
Confidence 01011 122235689999999998843 23 789999987 321 111111 122224455554 455554 3
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE---cCCCCeEEec
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS---GSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s---~~~dg~v~~w 356 (357)
+|+.|.+|.-+.-.-......+.....+|..++|+.++. .|+. ......|++|
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-------iLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-------ILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCC-------ceeeeecccccceEEEE
Confidence 466898887654221122222333444599999999998 7777 5555569988
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0008 Score=52.70 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=102.7
Q ss_pred cccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEe-CCCeEEEEEccccc
Q 038568 140 EHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGS-ADGRIRVWERSVVD 215 (357)
Q Consensus 140 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 215 (357)
+-...+..++|+| .++++....+.|..++. +|+.+..+........-.|++..++.++... .++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4456799999998 46666677788888886 5787777744445678889998888655555 58999999985211
Q ss_pred cccccccceee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc---CCceeeeee-----ccCCccceEEEe
Q 038568 216 HNKERKSRHML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER---DHRMVFAEA-----LWGHTGALLCLI 286 (357)
Q Consensus 216 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~-----~~~~~~~v~~~~ 286 (357)
........... +.....+...+-.++|+|.++.|+++-+..-..+|.++. ......... .......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11000000000 111113456689999999888888887777677777764 221111110 111233457777
Q ss_pred ecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCc------CceEEEEEeeCCC
Q 038568 287 NVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHE------KPVKSLVAISSSS 335 (357)
Q Consensus 287 ~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~ 335 (357)
+++. +++-...+..|..+| .+++......-..+.. ..--+|+|.+++.
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 8776 777788888999999 4443222222222211 2367899999986
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00035 Score=59.90 Aligned_cols=170 Identities=9% Similarity=-0.010 Sum_probs=96.5
Q ss_pred cEEEEEEec--C-eEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCC--CeEEEEEccc
Q 038568 144 AVSDLVVKQ--G-LMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSAD--GRIRVWERSV 213 (357)
Q Consensus 144 ~v~~~~~~~--~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d--~~i~i~d~~~ 213 (357)
....-.|+| + .++..+. +..|.++|+.+++..... ..........|+||| ++ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-
Confidence 667888999 4 3554443 356999999887654433 244555667899999 33 344333 467777765
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
. .. ...+..+........|+|||+.|+..+. .+ .|++.|+.+++...... .+.. ...++.+++
T Consensus 266 -----~----g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~--~~~~SPDG~ 331 (419)
T PRK04043 266 -----T----KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN--NSSVSTYKN 331 (419)
T ss_pred -----C----Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc--CceECCCCC
Confidence 1 11 1222222222345579999987776653 23 68888887765322211 1221 224444455
Q ss_pred eEEEecCC---------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 291 LLASGSAD---------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 291 ~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.|+..... ..|.+.|+.+++. +.+. .. .......|+||++
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT---AN-GVNQFPRFSSDGG 380 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC---CC-CCcCCeEECCCCC
Confidence 55444332 3688888887642 2222 21 1233578999987
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.9e-05 Score=49.03 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred EEEEEEec------CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 145 VSDLVVKQ------GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 145 v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
|+++++.. +.|++|+.|..|++|+-. +.+..+ .....+.+++-...++|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~------ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGGGRFAYALANGTVGVYDRS------ 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCCCEEEEEecCCEEEEEeCc------
Confidence 55666655 789999999999999843 566665 55678888888888899999999999999854
Q ss_pred ccccceeeeeEeeccccceeEEEEec-C--C-CEEEEEecCCeEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNG-D--G-SLLFSGGCDRWIVV 260 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~v 260 (357)
..+-..+ .+..+.++++.. + | .-|++|-.+|.|-+
T Consensus 72 ------~RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 ------QRLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------ceeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1222222 233366666544 2 2 27889988998743
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.5e-07 Score=78.59 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=119.1
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCC-eEEEEE
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADG-RIRVWE 210 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~-~i~i~d 210 (357)
+.+..|....+|++|+. +.|+.|+..|.|+++++.+|...... ..|..+++-+.-+.+| . |.+++... -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHHhc
Confidence 45567888999999999 99999999999999999999999988 8999999999999888 3 44443333 567899
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee-eeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF-AEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 289 (357)
+. ....+...+. .-.++.|+.....-+.|+......+||++++..+.. +....+....-.+..|+|
T Consensus 1174 ~~---------s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1174 AS---------STGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cc---------cccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 86 1233333333 345678887655555666666799999998875433 222222233336667777
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
. +++ .|| .+||++.. +.++.+......+ .=.|+|.+.
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~---~aIh~FD~ft~~~-~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIP---EAIHRFDQFTDYG-GGGFHPSGN 1279 (1516)
T ss_pred CcceEe---eCc--eeeeeccH---HHHhhhhhheecc-cccccCCCc
Confidence 6 333 344 57999876 3344443333211 224777765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0012 Score=52.75 Aligned_cols=234 Identities=15% Similarity=0.228 Sum_probs=135.7
Q ss_pred CceEEEEEecCc---eEEeecCCe-EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 73 GSVKSITFHITK---IFTAHQDCK-IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 73 ~~v~~l~~~~~~---l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.....++.+|+. ++.+-.-|+ ..+||..+++....+...+. +.|.+| -
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g----------------------RHFyGH------g 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG----------------------RHFYGH------G 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC----------------------CEEecC------E
Confidence 445677888854 666666665 78899998887665543221 222244 3
Q ss_pred EEec--CeEEEEec-----CCeEEEEEcC-cchhhhhccccccccEEEEEEecCC-eEEEEeC-------CCeEEEEEcc
Q 038568 149 VVKQ--GLMYSVSW-----DRSFKIWNAS-NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA-------DGRIRVWERS 212 (357)
Q Consensus 149 ~~~~--~~l~~~~~-----dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-------d~~i~i~d~~ 212 (357)
.|++ ++|++.-. .|.|-|||.. +.+.+..+ ..+.-....+.+.||+ .|+++.. .|..++ ++.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~ 134 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLD 134 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chh
Confidence 5666 66666533 5889999998 66777777 6666666778899999 4555421 122222 232
Q ss_pred cccccccc--ccceeeeeE--e--eccccceeEEEEecCCCEEEEEecCCe-------EEEEecccCCceeeeee----c
Q 038568 213 VVDHNKER--KSRHMLVTT--L--VKHRSTVNALALNGDGSLLFSGGCDRW-------IVVWERERDHRMVFAEA----L 275 (357)
Q Consensus 213 ~~~~~~~~--~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~----~ 275 (357)
+++..-.. ......+.. + ..|+..+..+++.++|..++..-..|. |-+++.... +..... .
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHH
Confidence 22211110 012333333 3 347788999999999876665544332 344443321 111111 1
Q ss_pred cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 276 WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
..-.+.+-+++++++ ..+|+-..|.+.+||..++ +.+.... -..+..++..+++ +++|.+...
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg---~~~~~~~--l~D~cGva~~~~~--------f~~ssG~G~ 278 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG---RLLGSVP--LPDACGVAPTDDG--------FLVSSGQGQ 278 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC---CEeeccc--cCceeeeeecCCc--------eEEeCCCcc
Confidence 233456777888665 4466667899999999998 4343332 2235566655554 666666443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0012 Score=54.77 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=98.8
Q ss_pred CeEEEEEcCcc----hhhh-hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 162 RSFKIWNASNY----KCLE-SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 162 g~i~iwd~~~~----~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
|.|.++++... ..+. .......++|++++-- +++|+++ ..+.|.+|++.. .. ......... ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~------~~-~l~~~~~~~-~~~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDN------SK-TLLKKAFYD-SPFY 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEET------TS-SEEEEEEE--BSSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccC------cc-cchhhheec-ceEE
Confidence 89999999884 1222 1124567889999877 5564444 458999999972 11 112222222 2235
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCC-ceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCC----
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDH-RMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKE---- 309 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~---- 309 (357)
+.++... ++++++|+....+.++..+... .+..+.. ......++++.+- ++.++.+..+|.+.++.....
T Consensus 132 i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 132 ITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred EEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence 5555554 5699999988889988665422 2323322 2234556777664 459999999999999988631
Q ss_pred ---c-ceeeeeeecCCcCceEEE---EEeeC--CCCCCCCeEEEEEcCCCCeEE
Q 038568 310 ---N-CYRCMAFLEGHEKPVKSL---VAISS--SSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 310 ---~-~~~~~~~~~~h~~~v~~~---~~~~~--~~~~~~~~~~l~s~~~dg~v~ 354 (357)
. .......+. ....|+++ .+.|. +. .......++-++.+|.|-
T Consensus 209 ~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~-~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 209 RDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSS-ESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp TTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS--TTEEEEEEEEETTS-EE
T ss_pred ccccccceeEEEEE-CCCccceEEEEEeeecCCCC-cccccceEEEEecCCEEE
Confidence 1 223333333 23567777 44452 11 000122466677788775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0013 Score=57.93 Aligned_cols=240 Identities=13% Similarity=0.139 Sum_probs=128.2
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCc-----e-EEEEEecCceEEee---------cCCeEEEEecCCcc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS-----V-KSITFHITKIFTAH---------QDCKIRVWKITASR 103 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~-----v-~~l~~~~~~l~~~~---------~d~~i~vwd~~~~~ 103 (357)
..++.++.+ .|+-+|. ++++.+-.+.. .... + ....+..+.++.++ .++.+.-+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~---~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGN---NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecC---CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 788888888 9999999 88888877764 2110 1 11222233354443 36788999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEeccccccccccc-ccEE-EEEEec--CeEEEEecCC-----------------
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVS-DLVVKQ--GLMYSVSWDR----------------- 162 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~~~~~--~~l~~~~~dg----------------- 162 (357)
..-............. . ... ....+ .+. ..+. ..++.+ ..++.++.++
T Consensus 187 ~~W~~~~~~~~~~~~~-~-~~~--------~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 187 LLWRFYTTEPDPNAFP-T-WGP--------DRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred eeeEeeccCCCcCCCC-C-CCC--------Cccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 6555443211000000 0 000 00000 000 1111 233333 5667776554
Q ss_pred -eEEEEEcCcchhhhhccccccc-----cEEEEEEe----cCC----eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 163 -SFKIWNASNYKCLESVNKAHED-----AVNAVVVS----DNG----VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 163 -~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~----~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.|.-+|.++++.+..++..... ......+. -++ .+++++.+|.+..+|.++ + +.+-
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G----~~~W 325 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------G----KLIS 325 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------C----cEee
Confidence 7999999999988776322111 00001111 122 377888899999999882 2 2222
Q ss_pred EeeccccceeEEEEecCCCEEEEE------------------ecCCeEEEEecccCCceeeeeeccCCc------cc--e
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSG------------------GCDRWIVVWERERDHRMVFAEALWGHT------GA--L 282 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~--v 282 (357)
..... ...++.+| ..++.+ ..+|.+.-.|+.+++.+-..... .+. .+ .
T Consensus 326 ~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~ 399 (488)
T cd00216 326 ARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWG 399 (488)
T ss_pred EeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccC
Confidence 21110 11122333 222222 24677888888888754433221 010 11 1
Q ss_pred EEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 283 LCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 283 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
..+...++.|+.++.||.|+.+|..+++
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCc
Confidence 2344566789999999999999999984
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=68.35 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=95.6
Q ss_pred EEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 145 VSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 145 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
.+|+.-..++++.|+.-|.+.+|+-..++....-.......+.....+++.+ +++|+..|.|.++.+..... ..
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-----~~ 112 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-----RD 112 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-----Cc
Confidence 3455555599999999999999997766654443223445556667777774 78888899999998872111 11
Q ss_pred eeeeeEe-eccccceeEEEEecCCCEEEEEecCCeEEEEecccC-CceeeeeeccCCccceEEEeecCceEEE
Q 038568 224 HMLVTTL-VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLAS 294 (357)
Q Consensus 224 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 294 (357)
...+... +.|...|++++|++++..+++|...|+|..-.+++. .-......+..-.+.|..+.+...+|+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV 185 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV 185 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence 1111111 237789999999999999999999999999888762 1111122233345566666665554333
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=56.46 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=39.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~ 102 (357)
.|+||+. .|+++..+.- ..+.|.++.|+.+. |+....||.++++|+...
T Consensus 62 ~I~iys~--sG~ll~~i~w---~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPW---DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECC--CCCEeEEEEE---CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 3899987 5677777665 44899999999876 889999999999998743
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=65.80 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=95.4
Q ss_pred ceEEEeccCCccccceeccccCCCCc-eEEEEEe-------cCceEEeecCCeEEEEecCCccceeeeeecCccccceee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGS-VKSITFH-------ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.|+-.|+ +.++.+..+.. +... |..++-. +...+.|-.+..+..||++-.... .+.. ..
T Consensus 505 ~ly~mDL-e~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~-~~------- 571 (794)
T PF08553_consen 505 KLYKMDL-ERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS-QS------- 571 (794)
T ss_pred ceEEEec-CCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec-cc-------
Confidence 8999999 99999999986 5433 5555432 223677888899999998854311 1110 00
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEE
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT 199 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 199 (357)
..+ .......|++-.. .+||.|+.+|.||+||- .++.-.+...+.+.+|..|..+.||+-+.
T Consensus 572 ---------------k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 572 ---------------KQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred ---------------ccc-ccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 000 3345678888888 99999999999999994 44444444367789999999999997666
Q ss_pred EeCCCeEEEEEcc
Q 038568 200 GSADGRIRVWERS 212 (357)
Q Consensus 200 ~~~d~~i~i~d~~ 212 (357)
+..+..+.+++..
T Consensus 635 aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 635 ATCKTYLLLIDTL 647 (794)
T ss_pred EeecceEEEEEEe
Confidence 6667889999875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00043 Score=45.89 Aligned_cols=104 Identities=25% Similarity=0.365 Sum_probs=68.6
Q ss_pred eeEEEEec---CC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-ceEEEecCCCeEEEeeCCCCcc
Q 038568 237 VNALALNG---DG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-DLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 237 v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
|++|++.. +| +.|++|+.|..|++|+-.. .+.... -...+.++...+ ..++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce--
Confidence 56666654 33 5899999999999998652 222222 345566666554 49999999999999987532
Q ss_pred eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 312 YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 312 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+-..+. +..++++.+..-.. .|..-|++|-.+|.|-+
T Consensus 74 ---lWRiKS-K~~~~~~~~~D~~g---dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 ---LWRIKS-KNQVTSMAFYDING---DGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeecc-CCCeEEEEEEcCCC---CCceEEEEEecCCeEEe
Confidence 333333 23366666654332 35567999999998753
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0048 Score=52.24 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=105.1
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCcchhhh-------------------------hc-----------------c
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLE-------------------------SV-----------------N 179 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~-----------------~ 179 (357)
.|+.+.|.+ ..|+.|...|.|.+|.....+... .+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477888888 789999999999988654321110 00 0
Q ss_pred ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeE--ee------ccccceeEEEEec-----CC
Q 038568 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT--LV------KHRSTVNALALNG-----DG 246 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~------~~~~~v~~~~~~~-----~~ 246 (357)
....++|++++.+.=|.+++|+.+|.+.+.|+|.. ..+.. +. .....++++.|.. |+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------eEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 22357899999998899999999999999999822 22221 11 1234677888863 33
Q ss_pred ---CEEEEEecCCeEEEEeccc--CCc--eeeeeeccCCccceEEEeec--------------------C---ceEEEec
Q 038568 247 ---SLLFSGGCDRWIVVWERER--DHR--MVFAEALWGHTGALLCLINV--------------------G---DLLASGS 296 (357)
Q Consensus 247 ---~~l~~~~~dg~i~vwd~~~--~~~--~~~~~~~~~~~~~v~~~~~~--------------------~---~~l~~~~ 296 (357)
-.|++|+..|.+.+|.+.- +.. .........+.+++..+..- + ..++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 3789999999999998752 111 11122222345555444311 0 1233444
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+..+|++...+.+. ........-....+.+.+-.. ..++..|++-..||.|+++
T Consensus 233 Se~~irv~~~~~~k~---~~K~~~~~~~~~~~~vv~~~~--~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 SESDIRVFKPPKSKG---AHKSFDDPFLCSSASVVPTIS--RNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp -SSEEEEE-TT---E---EEEE-SS-EEEEEEEEEEEE---EEEEEEEEEEETTSEEEEE
T ss_pred cccceEEEeCCCCcc---cceeeccccccceEEEEeecc--cCCceEEEEEECCCcEEEE
Confidence 466799999887632 222222222333444532100 0012378888899999886
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0034 Score=50.19 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=122.6
Q ss_pred cceEEEeeCC--ceEEEeccCCccccceeccccCCCCce--EEEEEecCc--eEEee-----cCCeEEEEecCCccceee
Q 038568 39 NSLLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSV--KSITFHITK--IFTAH-----QDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~--l~~~~-----~d~~i~vwd~~~~~~~~~ 107 (357)
+..++.+-.- ...+||. .+++..+.+.. ..+.- -.-.|++|+ |++.- ..|.|-|||... ....
T Consensus 17 ~~avafaRRPG~~~~v~D~-~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~r 90 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDC-RTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRR 90 (305)
T ss_pred CeEEEEEeCCCcEEEEEEc-CCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEE
Confidence 4444455433 7778888 77777766654 22221 146799987 55543 357899999982 2234
Q ss_pred eeecCcccccee-eeecCCC-eEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcc---ccc
Q 038568 108 VSTLPTVKDRLI-RSVLPNN-YVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN---KAH 182 (357)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~ 182 (357)
+.+++......- ....+++ .+.+......+-..... ..|=....+..+...|..+++.+.+.. ..|
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR---------~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR---------AKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc---------eecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 444332110000 0011111 11111111100000000 112223335567777788888776642 236
Q ss_pred cccEEEEEEecCCeEEEEeCCC--------eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-
Q 038568 183 EDAVNAVVVSDNGVVYTGSADG--------RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG- 253 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 253 (357)
...+..+++.++|.++.+.... .|-+++... . ......+........+.+-+|++++++.++++.+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 6789999999999766665421 133333220 0 0000000011223457789999999998776555
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeE
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTV 301 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i 301 (357)
..+.+.+||..+++.+... .-..+..++..++ ++++.+. |.+
T Consensus 237 rGg~~~~~d~~tg~~~~~~-----~l~D~cGva~~~~~f~~ssG~-G~~ 279 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSV-----PLPDACGVAPTDDGFLVSSGQ-GQL 279 (305)
T ss_pred CCCEEEEEECCCCCEeecc-----ccCceeeeeecCCceEEeCCC-ccE
Confidence 5788999999988743222 1223455666655 5555554 443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00037 Score=62.07 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=73.4
Q ss_pred cceEEEee----CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeec
Q 038568 39 NSLLYAAS----LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 39 ~~~l~t~~----~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
..++|+++ .. .|.||- +++++-.... -.-.+++++|+|.. |+.|-.-|.+.+|...+.+.....
T Consensus 27 ePlfAVA~fS~er~GSVtIfa--dtGEPqr~Vt----~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~--- 97 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA--DTGEPQRDVT----YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV--- 97 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe--cCCCCCcccc----cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec---
Confidence 56777776 34 788875 5666554443 33456779999998 778888899999998776543222
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
..|..+|..+.|++ +.++++..-|.+.+|....
T Consensus 98 ---------------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ---------------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 27899999999999 8999999999999998763
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=42.08 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.4
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++...+..|...|.++.|.+.+. ++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------EEEEecCCCeEEEcC
Confidence 44566678889999999999887 999999999999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=67.78 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=82.4
Q ss_pred EEEec--CeEEEEe----cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEcccccccccc
Q 038568 148 LVVKQ--GLMYSVS----WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 148 ~~~~~--~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
..|+| .+++.++ ..|.|.||- .+|++...+ ..+-.+++++|+|... |+.|-.-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-------- 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-------- 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC--------
Confidence 45777 6666665 357888885 567765554 3444567899999984 8888889999999876
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
..+.......|..++..+.|+++|..++++..-|.+.+|......
T Consensus 90 --~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 90 --TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred --CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 334444556799999999999999999999999999999887433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=59.41 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=86.8
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
+..-+.++.|+-++++ ..... .+...-+... .....-+..+++|+.+|.|++|+...... ......
T Consensus 33 l~~~sa~~~v~~~~~~------k~k~s---~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVR------KHKES---CRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVC 98 (238)
T ss_pred hccccCCcccccchhh------hhhhh---hhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhhh
Confidence 5666788888888877 11110 1111111111 11112345799999999999998872221 111112
Q ss_pred CCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEc--CCC
Q 038568 277 GHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSG--SLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~--~~d 350 (357)
.-...+.+..+.++ +..+++.||.||.|++... +.+.....|. .++..+..+..++ +++.+ |.|
T Consensus 99 s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~~~e~~ivv~sd~-------~i~~a~~S~d 168 (238)
T KOG2444|consen 99 SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFESGEELIVVGSDE-------FLKIADTSHD 168 (238)
T ss_pred cccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCCCcceeEEecCCc-------eEEeeccccc
Confidence 22344555555443 8899999999999999876 5566666777 6777777777766 78777 888
Q ss_pred CeEEecC
Q 038568 351 GEIKVWD 357 (357)
Q Consensus 351 g~v~~wd 357 (357)
..++.||
T Consensus 169 ~~~k~W~ 175 (238)
T KOG2444|consen 169 RVLKKWN 175 (238)
T ss_pred hhhhhcc
Confidence 8888886
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=64.45 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=73.9
Q ss_pred CeEEEEecCCeEEEEEcCcch--hhhh--ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYK--CLES--VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
...+.|-.+..+..||.+-.. .+.. ..........|++-..+|+|++|+.+|.||+||-- ......
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~----------g~~AKT 612 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL----------GKRAKT 612 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc----------chhhhh
Confidence 456677778899999998532 2211 11245567889999999999999999999999942 122444
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.+.+...+|.+|..+.||++|++.+ +..+.+++.
T Consensus 613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5567789999999999999888765 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0076 Score=51.85 Aligned_cols=226 Identities=11% Similarity=0.054 Sum_probs=105.7
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
..-....+.++ |+++++++.+.-.|+.. ...+... .+.-...+|.+++ +++-...++|.++.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~-~~~r~k~--------~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTA-LAWRNKA--------FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEET-TTTEEEE--------EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEc-cCCcccc--------cCceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 33456788888 88888877666666664 3333222 2344567888755 88888888999964322322
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
...+.. ...+..+-. ..+|+.. .++.|.+||+.+++.+..+ . . .
T Consensus 102 ~k~i~~-------------------------------~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i-~-v-~ 145 (443)
T PF04053_consen 102 VKSIKL-------------------------------PFSVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRI-D-V-S 145 (443)
T ss_dssp T------------------------------------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEE-S-S--
T ss_pred ceEEcC-------------------------------CcccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEE-e-c-C
Confidence 112211 111222222 3444444 4558999999999999888 2 2 2
Q ss_pred cEEEEEEecCCeEEEEeCCCeEEEEEccccccccccc-cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERK-SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
+|..+.|++++.+++-..+..+.+++........... ...........-...|.+..|..+ .++-.+.. .|+. +
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 4899999999854444446688888765210000000 000122222222567888888866 34433333 5665 3
Q ss_pred ccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCC
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRG 307 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~ 307 (357)
-.++. ..+..+ ..++.-+.+.+ +.+.....|+.+..+.+.
T Consensus 221 ~~Ge~-~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 VNGET-GIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTEE-EEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCc-ceEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 33322 233332 22333344444 677777888888877665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0061 Score=46.89 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=47.5
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEE---EEEecCceEEeecCCeEEEEecCCccceee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKS---ITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~---l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
|++++.|... .+++.+. +++.+...+.. .+.|.+ ++++...+..++.|++....|..+...+..
T Consensus 63 gdfVV~GCy~g~lYfl~~-~tGs~~w~f~~----~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCV-KTGSQIWNFVI----LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEe-cchhheeeeee----hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 7788889988 9999999 99988887773 333332 233333399999999999999987665443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.6e-05 Score=39.91 Aligned_cols=37 Identities=35% Similarity=0.547 Sum_probs=32.5
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
+...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.01 Score=46.59 Aligned_cols=203 Identities=9% Similarity=0.069 Sum_probs=99.0
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
-...+..|+|.|+. +++....+.|...+.+ ++.++.+.. .-.+..-.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-----------------------------~g~~D~Eg 69 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-----------------------------DGFGDYEG 69 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------------------SS-SSEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-----------------------------CCCCCcee
Confidence 55569999999964 6666677788777764 555444432 12345667
Q ss_pred EEEec-CeEEEEe-cCCeEEEEEcCcchh------hhhcc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 148 LVVKQ-GLMYSVS-WDRSFKIWNASNYKC------LESVN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 148 ~~~~~-~~l~~~~-~dg~i~iwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
+++.. ..++... .++.+.++++..... ...+. ..++..+-.++|++.+ .|+++-...-..+|.++..
T Consensus 70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 77777 4444444 588899988843221 11111 2345678999999976 6777777777777777621
Q ss_pred ccccccc-cceeeeeEeeccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCc------cceEEEe
Q 038568 215 DHNKERK-SRHMLVTTLVKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT------GALLCLI 286 (357)
Q Consensus 215 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~v~~~~ 286 (357)
....... ...............+.+++++|. +++++.+..+..|..+|.. ++......-..+.. ...-.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEE
T ss_pred cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEE
Confidence 1000000 000000001112345788999994 5677777788889999944 54333222222111 1234555
Q ss_pred ecCc-eEEEecCCCeEEEe
Q 038568 287 NVGD-LLASGSADRTVRIW 304 (357)
Q Consensus 287 ~~~~-~l~~~~~dg~i~vw 304 (357)
++++ .|...++-+..++|
T Consensus 229 ~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEcCCceEEEe
Confidence 6555 44444455544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=60.83 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=73.7
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~ 259 (357)
....+.-+.|+|.- .+|.+..+|.|.+..+. .+.+..+.-+...++ +++|.|||+.|++|-.||+|+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-----------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-----------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-----------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 34567889999987 69999999999988875 455666665666666 999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
+.|..++..+... .......|.+..|++.
T Consensus 88 L~Dve~~~~l~~~--~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 88 LHDVEKGGRLVSF--LFSVETDISKGIWDRI 116 (665)
T ss_pred EEEccCCCceecc--ccccccchheeecccc
Confidence 9999988754321 2334556777777643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0089 Score=53.58 Aligned_cols=183 Identities=9% Similarity=0.127 Sum_probs=90.8
Q ss_pred CeEEEEecC------CeEEEEEcCcchh--hhhccccccccEEEEEEecCCeEEEEeCCC-----eEEEEEccccccccc
Q 038568 153 GLMYSVSWD------RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNGVVYTGSADG-----RIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~ 219 (357)
..++.|+.+ ..+..||..+.+- +..+ .....-.+++...+...+.|+.++ .+..||..+
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~------ 376 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD------ 376 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC------
Confidence 556666643 3477888776532 2222 111111233333333466677653 477888761
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----------------------CeEEEEecccCCceeeeeecc
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----------------------RWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------g~i~vwd~~~~~~~~~~~~~~ 276 (357)
.....+..+.........+. -++++.+.|+.+ ..+..||..+.+ ......+.
T Consensus 377 --~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~ 451 (557)
T PHA02713 377 --DKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFW 451 (557)
T ss_pred --CeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCC
Confidence 12222222221111111222 257777777754 247788887653 22222222
Q ss_pred CCccceEEEeecCceEEEecCC------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 277 GHTGALLCLINVGDLLASGSAD------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
............+...+.||.+ ..+..||.++...+..+..+.........+.. ++. +.+.||.|
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-------iyv~Gg~~ 522 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-------IMMLHCYE 522 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-------EEEEeeec
Confidence 2222223445666666667654 24678998872246666655543333322222 444 88899888
Q ss_pred C--eEEecC
Q 038568 351 G--EIKVWD 357 (357)
Q Consensus 351 g--~v~~wd 357 (357)
| .+..||
T Consensus 523 ~~~~~e~yd 531 (557)
T PHA02713 523 SYMLQDTFN 531 (557)
T ss_pred ceeehhhcC
Confidence 8 444443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.035 Score=51.04 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=71.4
Q ss_pred eeEEEEecC-CCEEEEEec----------CCeEEEEecccCCceeeeeeccCCccceEEE-eecCceEEEecCCCeEEEe
Q 038568 237 VNALALNGD-GSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGDLLASGSADRTVRIW 304 (357)
Q Consensus 237 v~~~~~~~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~dg~i~vw 304 (357)
+.+..|..| +.++++|.. .|.|.+|.+.....+....... -.+.+.++ .|++.++|.- ...|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~fngkllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEFNGKLLAGI--NQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhhCCeEEEec--CcEEEEE
Confidence 455567776 667777753 5889999988755544444332 34455554 4666666554 4579999
Q ss_pred eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+..++ +.+..-..|..++..+...-.+. .++.|..-+.+.+
T Consensus 854 e~t~~---~eLr~e~~~~~~~~aL~l~v~gd-------eI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 854 EWTTE---RELRIECNISNPIIALDLQVKGD-------EIAVGDLMRSITL 894 (1096)
T ss_pred Ecccc---ceehhhhcccCCeEEEEEEecCc-------EEEEeeccceEEE
Confidence 99886 44555566778888888888887 8888876665543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.014 Score=45.96 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=158.0
Q ss_pred ccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 29 HMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 29 ~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.+-+..+.+++++...+..+ -++|.|+ .+......+.. ....+.-.++..+.+....+..|.-+.+.|+.+.+....
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDI-S~P~sP~~~~~-lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDI-STPDSPTLIGF-LNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEec-cCCCCcceecc-ccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 34566777888999999988 9999999 54333222211 113355667777777766666666678889887765443
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcc-ccccccE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAV 186 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v 186 (357)
..... .....-..++.+.++-..+..|+-+.+-|+.....-.-+. ......+
T Consensus 164 agrya---------------------------~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~ 216 (370)
T COG5276 164 AGRYA---------------------------LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGT 216 (370)
T ss_pred eeeec---------------------------cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCce
Confidence 32211 2223346777777888888899999999997644222221 1233367
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
.++..+++.-+++.... -+.+-|..... ....... .....++.--.+.-.+++......+.-+.+-|+.+.
T Consensus 217 ~sv~vsdnr~y~vvy~e-gvlivd~s~~s-------sp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 217 YSVSVSDNRAYLVVYDE-GVLIVDVSGPS-------SPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEEecCCeeEEEEccc-ceEEEecCCCC-------CceEeec-cccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 78888777644444444 45556655111 1111111 112222221123334667777777777888888766
Q ss_pred CceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
........+.........+...+.++..+..+ ...+-+....+ ......+....+.+.+.+-+.+ .+.+
T Consensus 288 ~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~q-------~~y~ 356 (370)
T COG5276 288 PSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDTQ-------IIYS 356 (370)
T ss_pred CCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEEee-------EEEE
Confidence 55444333332333445566667766666665 45555655431 1112222222233344444444 6677
Q ss_pred cCCCCeEEecC
Q 038568 347 GSLNGEIKVWD 357 (357)
Q Consensus 347 ~~~dg~v~~wd 357 (357)
...++-+.+||
T Consensus 357 ~d~~~gl~i~~ 367 (370)
T COG5276 357 TDYNGGLSIIE 367 (370)
T ss_pred eecCCCEEEEE
Confidence 77777777775
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.018 Score=47.01 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=87.8
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhcc----ccccccEEEEEEecCCeEEEEeCC------------CeEEEEEcccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVN----KAHEDAVNAVVVSDNGVVYTGSAD------------GRIRVWERSVVDH 216 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~ 216 (357)
..|+++. . -+.+++.+++..+..+. .......+.+...|+|.+..+... |.|+.+|..
T Consensus 78 g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---- 151 (307)
T COG3386 78 GRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---- 151 (307)
T ss_pred CeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----
Confidence 4444443 3 35666665544422221 112245677888899977666655 223333321
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEeccc--CCce--eeeeeccCCccce--EEEeecC
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERER--DHRM--VFAEALWGHTGAL--LCLINVG 289 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~~--~~~~~~~~~~~~v--~~~~~~~ 289 (357)
.........+-..-+.|+||||++.|+.+.. .+.|.-|++.. +..- ..........+.. .++.-.+
T Consensus 152 -------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 152 -------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred -------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 2223333333455678999999988777765 47888887762 1100 0011111122222 3334444
Q ss_pred ceEEEecCCC-eEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 290 DLLASGSADR-TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 290 ~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.+-+++..+| .|.+|+.. + +.+.........+++++|--
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CEEEecccCCceEEEECCC-C---cEEEEEECCCCCCccceEeC
Confidence 4443444443 89999988 5 44555555556788888865
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.024 Score=50.17 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=50.0
Q ss_pred cccceeEEEEecCCCEEEEEec-CCeEEEEecccCCcee---------eeeeccCCccceEEEeecCc--eEEEecCCCe
Q 038568 233 HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMV---------FAEALWGHTGALLCLINVGD--LLASGSADRT 300 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 300 (357)
-......++++|||+++++++. +++|.|+|+.+.+... ......--.++ +..+|+++ ...+-.-|..
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecce
Confidence 3455688999999998877665 8999999998755311 11111111222 33455655 6677778999
Q ss_pred EEEeeCCC
Q 038568 301 VRIWQRGK 308 (357)
Q Consensus 301 i~vw~~~~ 308 (357)
|..|++.+
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=52.25 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=41.9
Q ss_pred eecCc-eEEEecCCCeEEEeeCCCCcc---------eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 286 INVGD-LLASGSADRTVRIWQRGKENC---------YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 286 ~~~~~-~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+.+++ .++++..++++.|.|+.+.+. ...+.+...-.+| ...+|.+++. ...|--.|..|-.
T Consensus 329 SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~-------aytslf~dsqv~k 400 (635)
T PRK02888 329 SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGN-------AYTTLFLDSQIVK 400 (635)
T ss_pred CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCC-------EEEeEeecceeEE
Confidence 34444 555666699999999987531 1123333332333 4567888876 7888888999998
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
||
T Consensus 401 wn 402 (635)
T PRK02888 401 WN 402 (635)
T ss_pred Ee
Confidence 86
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.021 Score=46.32 Aligned_cols=143 Identities=10% Similarity=0.233 Sum_probs=86.2
Q ss_pred CceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 83 TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 83 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+.|+.|+.+| +.+++.........+ .+...|..+...+ +.+++-+
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i-------------------------------~~~~~I~ql~vl~~~~~llvLs- 54 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRI-------------------------------LKLSSITQLSVLPELNLLLVLS- 54 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeE-------------------------------eecceEEEEEEecccCEEEEEc-
Confidence 4488898888 899998333222222 2233489999888 5555554
Q ss_pred CCeEEEEEcCcchhhhhc-------------cccccccEEEEE--EecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 161 DRSFKIWNASNYKCLESV-------------NKAHEDAVNAVV--VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~-------------~~~~~~~v~~~~--~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
|+.+.++++......... .......+...+ -...+ ..++......|.+|... ......
T Consensus 55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~------~~~~~f 128 (275)
T PF00780_consen 55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN------DPRNSF 128 (275)
T ss_pred CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE------CCcccc
Confidence 599999998765444311 012233444444 11222 44555556699999987 211122
Q ss_pred -eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 225 -MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 225 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
....++. ....+..++|. ++.++.|..++ ..+.|+.++..
T Consensus 129 ~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 129 SKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred cceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 3344443 34778889998 45788777555 88899986654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=54.64 Aligned_cols=143 Identities=8% Similarity=0.131 Sum_probs=100.1
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---------eEEeecCCeEEEEecCCccceeeeee
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---------IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
+|.++... .++=-|+ +.++.+.+..- +.. |+-+.+.|+. -+.|-.|..|.-||++-...- .+..
T Consensus 348 il~~~~~~~~l~klDI-E~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDI-ERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred EeeCCCCcCcceeeec-ccceeeeEeec---cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 33444455 8888899 89999998885 444 7777888763 445667888999998733221 1111
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.+. +.+ .......|.+-.. .+++.|+.+|.|++||- .+..-.+..++...+|..+
T Consensus 422 ~q~----------------------kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 422 VQS----------------------KQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred eec----------------------ccc-ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 000 000 2233456666666 99999999999999996 5555555448889999999
Q ss_pred EEecCCeEEEEeCCCeEEEEEccc
Q 038568 190 VVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 190 ~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
..+.+|..+.|..+..+.+.+...
T Consensus 478 dvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred EeeccCcEEEEecccEEEEEEEec
Confidence 999999877777888999988764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.027 Score=45.68 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=124.4
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
++.|+.|..+-+.+++. ........+. +...|..+...|+. ++..-.|+.+.++++..-...............
T Consensus 7 ~~~L~vGt~~Gl~~~~~-~~~~~~~~i~----~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDL-SDPSKPTRIL----KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCCEEEEEe-cCCccceeEe----ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccc
Confidence 78899997668888888 4434444443 44459999999875 333444699999998765433211100000000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEE---Eec-CeEEEEecCCeEEEEEcCcc-----hhhhhccccccccEEE
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV---VKQ-GLMYSVSWDRSFKIWNASNY-----KCLESVNKAHEDAVNA 188 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~ 188 (357)
. ...-......+..++ -.. ...+.......|.+|..... +....+ .....+.+
T Consensus 82 ~----------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~ 143 (275)
T PF00780_consen 82 S----------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSS 143 (275)
T ss_pred c----------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEE
Confidence 0 000001222333333 111 33334444558998887653 233444 45578889
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceee--eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHML--VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
++|.++ .++.|.. ....+.|+.+.....-....... .........++..+..+ ++.+|++- |..-...|.. +
T Consensus 144 i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G 217 (275)
T PF00780_consen 144 IAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-G 217 (275)
T ss_pred EEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-C
Confidence 999844 5656554 45777888732211100000000 00001112233333433 44556543 3333333443 3
Q ss_pred CceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
+... ...+. =......+.+...+|++.+.++ |.||++.++ +.++.+.
T Consensus 218 ~~~r-~~~i~-W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~---~lvQ~i~ 264 (275)
T PF00780_consen 218 EPSR-KSTIQ-WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETG---ELVQTIP 264 (275)
T ss_pred CcCc-ccEEE-cCCchhEEEEECCEEEEECCCE-EEEEECcCC---cEEEEEE
Confidence 3221 11111 1224556777777887777655 999999998 4455544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.024 Score=50.84 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=43.0
Q ss_pred CCCEEEEEecC------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC--eEEEeeCCCC
Q 038568 245 DGSLLFSGGCD------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR--TVRIWQRGKE 309 (357)
Q Consensus 245 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg--~i~vw~~~~~ 309 (357)
++++.+.|+.+ ..+..||..+.........+.............+...++||.|| .+..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 46666777654 24678998872233344444444445555667777888999888 7888888876
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00036 Score=52.27 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=68.9
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
..++.|+.+|.|.+|+.+..-............|.++.-.-+. +..+++.+|.|+.|++. ..+.+...
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----------p~k~~g~~ 140 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----------PNKVLGYV 140 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----------cCceeeee
Confidence 7789999999999999874333222212333344444333232 68889999999999987 44444444
Q ss_pred eccc-cceeEEEEecCCCEEEEE--ecCCeEEEEecccCC
Q 038568 231 VKHR-STVNALALNGDGSLLFSG--GCDRWIVVWERERDH 267 (357)
Q Consensus 231 ~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~ 267 (357)
..|. .++..+..+..+++++.+ +.|..++.|++....
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 4555 556666666666777777 777888888876443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00048 Score=59.16 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=69.7
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEE-EEEEecCCe-EEEEeCCCeEEEEEccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN-AVVVSDNGV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
...+.-+.|+| .++|.+..+|.|.+..++ .+.+.++ ..++..++ +++|.|||. |++|-.||+|++.|+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~---- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK---- 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC----
Confidence 45678899999 999999999999999987 7888888 44555555 999999995 89999999999999982
Q ss_pred cccccceeeeeE-eeccccceeEEEEec
Q 038568 218 KERKSRHMLVTT-LVKHRSTVNALALNG 244 (357)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 244 (357)
...+.. ...-..+|.++.|.+
T Consensus 94 ------~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 ------GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ------CCceeccccccccchheeeccc
Confidence 222221 222345677777763
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.054 Score=46.56 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=87.9
Q ss_pred ccEEEEEEec-CeEEEEecCCeEEEEEcCcch------hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK------CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 215 (357)
+.+.++.|.. ..|+....||.++++|+.... .+... .-....+....+..+|.++. ..++.+.+.+-- +
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~-~v~e~~i~~~~~~~~GivvL-t~~~~~~~v~n~--~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEE-KVLECRIFAIWFYKNGIVVL-TGNNRFYVVNNI--D 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhcccc-CcccccccccccCCCCEEEE-CCCCeEEEEeCc--c
Confidence 7899999999 888899999999999986322 11111 11112233333444564322 334454443321 1
Q ss_pred cc-cccccc--eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 216 HN-KERKSR--HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 216 ~~-~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
.. ...... .........+........++.+....+....++.+.+.+-..... . ...+++..++.+|+
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i-~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------I-DSDGPIIKIAVSPNGK 229 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------c-cCCCCeEEEEECCCCC
Confidence 00 000000 000000000111100123444555555555666666554332211 1 12345666666554
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCC-cCceEEEEEeeCCC
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSLVAISSSS 335 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~ 335 (357)
++|.-..+|.+.+.+..-. +.+..+... ......+.|+-+..
T Consensus 230 ~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 8888888899888876543 223333322 34566777877653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.012 Score=54.30 Aligned_cols=79 Identities=11% Similarity=0.257 Sum_probs=56.5
Q ss_pred cceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee
Q 038568 30 MIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 30 ~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
..+.+.+.-+..++.|+.. .+-..|. ... +..+.......++|++++|+.++ ++.|-.+|.|.+||+..++..+
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~-~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDM-TGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhh-hcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 3444555557788888888 9998888 432 11121111267899999999988 7778889999999999988777
Q ss_pred eeeec
Q 038568 107 LVSTL 111 (357)
Q Consensus 107 ~~~~~ 111 (357)
.+...
T Consensus 167 ~i~e~ 171 (1206)
T KOG2079|consen 167 VITEH 171 (1206)
T ss_pred eeeec
Confidence 66543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.033 Score=49.98 Aligned_cols=186 Identities=15% Similarity=0.236 Sum_probs=95.9
Q ss_pred EEEEEEec-CeEEEEecC------CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCe-----EEEEEc
Q 038568 145 VSDLVVKQ-GLMYSVSWD------RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGR-----IRVWER 211 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~-----i~i~d~ 211 (357)
-.+++..+ ...++|+.| .++..||..+.+-...-.......-.+++.. +| ..++|+.||. +-.||.
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecC
Confidence 34455555 677888888 3577888877653221101111111223322 44 5788888865 556665
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC------eEEEEecccCCceeeeeeccCCccceEEE
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR------WIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
. ......+..+........... -+|++.++|+.++ .+..||..++.- .....+..-.......
T Consensus 404 ~--------~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a 472 (571)
T KOG4441|consen 404 V--------TNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTW-TLIAPMNTRRSGFGVA 472 (571)
T ss_pred C--------CCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCce-eecCCcccccccceEE
Confidence 4 112333322222112222222 2677888887554 577888876642 1222222222233345
Q ss_pred eecCceEEEecCCC-----eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 286 INVGDLLASGSADR-----TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 286 ~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
..++.+.+.||.|+ +|..||..+.+ +..+.........+-...+ ++. ..+.||.||.
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~~--~~~-------ly~vGG~~~~ 534 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVVL--GGK-------LYAVGGFDGN 534 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEEE--CCE-------EEEEecccCc
Confidence 56666888888776 37778888763 4444333333222222222 222 7788888875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.079 Score=43.29 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=132.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecCCccceeeeeecCcccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.+.++|. ++++.+..+.. +..-.+..+|++ +++++ ..-.|.+||..+-.....+...+..+.
T Consensus 18 rv~viD~-d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDA-DSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEET-TTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEEC-CCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 7899998 88777666654 233346677876 54432 345699999988765554433221000
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE--EecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS--VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
.. .- ....++++. ++++. .+-...|.|-|+...+.+..+ ...+ +..+--.
T Consensus 92 ~~---------------------~~--~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei--~~PG-C~~iyP~ 145 (342)
T PF06433_consen 92 QV---------------------VP--YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI--DTPG-CWLIYPS 145 (342)
T ss_dssp -B---------------------S----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE--EGTS-EEEEEEE
T ss_pred ee---------------------cc--cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee--cCCC-EEEEEec
Confidence 00 00 001112222 22222 222335666666666666555 2222 2222223
Q ss_pred cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce-eEEEEecCCCEEEEEecCCeEEEEecccCCceee
Q 038568 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV-NALALNGDGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 193 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
++..|.+-|.||.+....+...... ..+....+.....++ ..-++...+..++--+.+|.|+--|+...... .
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~-----~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKE-----AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-F 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSE-----EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-E
T ss_pred CCCceEEEecCCceEEEEECCCCCE-----eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-c
Confidence 3446888999999999888732111 111111222222333 23345555555555778999999888755421 2
Q ss_pred eeeccC------------CccceEEEeecCceEEE---ecCCC-------eEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 272 AEALWG------------HTGALLCLINVGDLLAS---GSADR-------TVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 272 ~~~~~~------------~~~~v~~~~~~~~~l~~---~~~dg-------~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
.....- ..-.+.++....+.|++ .+.+| .|.++|+.++ +.+.++.. ..++.+|.
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---krv~Ri~l-~~~~~Si~ 295 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---KRVARIPL-EHPIDSIA 295 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---EEEEEEEE-EEEESEEE
T ss_pred cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---eEEEEEeC-CCccceEE
Confidence 111110 01122333322222222 12222 4778888887 55555543 34688999
Q ss_pred EeeCCCCCCCCeEEEEE-cCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGS-GSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s-~~~dg~v~~wd 357 (357)
.+.+.+ .+|++ ...++.+.+||
T Consensus 296 Vsqd~~------P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 296 VSQDDK------PLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EESSSS-------EEEEEETTTTEEEEEE
T ss_pred EccCCC------cEEEEEcCCCCeEEEEe
Confidence 998876 26654 45688999886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.078 Score=43.10 Aligned_cols=278 Identities=10% Similarity=0.047 Sum_probs=124.8
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccC--CCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLS--SSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
-...+.+|.|. ..-+++|....| +...+.++.-........ ..-...++.|..+....++..+. .+--.+.++
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGL-LLHTTDGGK 91 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTE-EEEESSTTS
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCce-EEEecCCCC
Confidence 35689999998 455555554432 333144443333321100 12346788887665333444553 344445555
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE-EecCeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV-VKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
....+.... .-......+. ..+.....++..|.|..= ...++.-..+....
T Consensus 92 tW~~v~l~~---------------------------~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 92 TWERVPLSS---------------------------KLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSET 143 (302)
T ss_dssp S-EE----T---------------------------T-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S-
T ss_pred CcEEeecCC---------------------------CCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCC
Confidence 444433211 0111122222 233444444444544332 12233222222344
Q ss_pred cccEEEEEEecCCeEEEEeCCCeE-EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 183 EDAVNAVVVSDNGVVYTGSADGRI-RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
...+..+.-+++|.+++.+..|.+ .-||.- .....+. .......|..|.|.|++.+.+++ ..|.|+.=
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--------~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--------QTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---------SS-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCC--------CccceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 567888888899965555555554 567643 1122222 22345789999999998766654 88888887
Q ss_pred e-cccCCceee-eeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 262 E-RERDHRMVF-AEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 262 d-~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
+ ....+.... ..........+..++|.++ .+.+++..|.+ +.....++.++.......-...+..+.|.+..+
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~--- 288 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK--- 288 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE---
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc---
Confidence 7 222222111 1111123334788888765 44445555543 556667766666555445556688999987764
Q ss_pred CCeEEEEEcCCCCeEEec
Q 038568 339 NGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 339 ~~~~~l~s~~~dg~v~~w 356 (357)
-++ -+.+|.|.-|
T Consensus 289 ----gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 289 ----GFV-LGQDGVLLRY 301 (302)
T ss_dssp ----EEE-E-STTEEEEE
T ss_pred ----eEE-ECCCcEEEEe
Confidence 444 4568888765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.081 Score=43.23 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=80.4
Q ss_pred CeEEEEecCCeEEEEEcC-cchhhhhcc---cccccc-EEEEEEec-CCeEEEEeCCCeEEEEEccccccccccccceee
Q 038568 153 GLMYSVSWDRSFKIWNAS-NYKCLESVN---KAHEDA-VNAVVVSD-NGVVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~---~~~~~~-v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
..+.+-+.||.+.-..+. .|+...+.. .....+ +..-++.. .+.++-.+.+|.|+-.|+.... .+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~--------~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS--------AKF 219 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--------EEE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc--------ccc
Confidence 678888899999988887 344332110 111222 22233333 3456667889999998886211 111
Q ss_pred eeEeecc----------ccceeEEEEecCCCEEEEEec--------CC--eEEEEecccCCceeeeeeccCCccceEEEe
Q 038568 227 VTTLVKH----------RSTVNALALNGDGSLLFSGGC--------DR--WIVVWERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 227 ~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~--------dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
...+..- .+.-.-+++++..+.|++--. |+ .|-++|+.+.+++..+.. ..++.++.
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~ 295 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIA 295 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEE
T ss_pred cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEE
Confidence 1111110 112334778876655554322 11 477888888876543332 22354555
Q ss_pred ecCc---eEE-EecCCCeEEEeeCCCCcceeeee
Q 038568 287 NVGD---LLA-SGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 287 ~~~~---~l~-~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
.+.+ +|+ ....++.+.+||..+++..+.+.
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5443 554 45678999999999985444333
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=43.74 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=55.8
Q ss_pred cCCeEEEEEcCcchhhhhccccccc-cEEEEEEecC--C-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeec--
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHED-AVNAVVVSDN--G-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-- 232 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~--~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 232 (357)
...++.+||+.+.+.++++..+... ....+.|..+ . + ++.+.-..+|-.|--.. .+.-..+.+..+..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-----~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-----DGEWAAEKVIDIPAKK 294 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-----TTEEEEEEEEEE--EE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-----CCCeeeeEEEECCCcc
Confidence 3568999999999999988444333 4557777643 3 3 55444455555443310 11111111111111
Q ss_pred ---------------cccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeee
Q 038568 233 ---------------HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 233 ---------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 273 (357)
-..-|+.|..|.|.++|..++. +|.|+.||+.....+.+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 1234789999999998887764 9999999999876655543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=43.19 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCC-----eEEEEEccccccccccccceeeeeEeeccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADG-----RIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
...|.-.|+.+++....+ .....+..+.++|.. .+++=|..| .-|+|-++.. .....++.... ..
T Consensus 167 ~~~i~~idl~tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d------g~~~~~v~~~~-~~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD------GSNVKKVHRRM-EG 237 (386)
T ss_dssp -EEEEEEETTT--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT------S---EESS----TT
T ss_pred CceEEEEECCCCceeEEE--ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC------CCcceeeecCC-CC
Confidence 345666788877654444 456677889999976 444444333 2377877622 11222222221 13
Q ss_pred cceeEEEEecCCCEEEEEe-----cCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCC---------
Q 038568 235 STVNALALNGDGSLLFSGG-----CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSAD--------- 298 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------- 298 (357)
..+..=-|.|||..|.--+ .+..|.-+|+.+++.... ... .+...+..++ ++++-=+.|
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~-~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~ 312 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL-MEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAG 312 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE-EEE-----SEEEEEE-TTSSEEEEEE-----------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE-EeC----CceeeeEEcCCCCEEEecCCCCCccccccc
Confidence 3455556888888665422 244577778877654322 111 1122222223 343322222
Q ss_pred -------CeEEEeeCCCCcceeeeee-------ecCCcC-ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 299 -------RTVRIWQRGKENCYRCMAF-------LEGHEK-PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 299 -------g~i~vw~~~~~~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
-.|++++++.++.. .+.. +.++.. .=-...|+||++ .+|.++...|...||
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk------~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGK------WVLFRSDMEGPPAVY 378 (386)
T ss_dssp --------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSS------EEEEEE-TTSS-EEE
T ss_pred cceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCC------EEEEECCCCCCccEE
Confidence 25677888765322 1222 222221 123578999998 577788888876665
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=59.22 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=68.0
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 275 (357)
.++.|+..|.+...|+. . +..+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++....+...
T Consensus 101 ~ivi~Ts~ghvl~~d~~------~---nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMT------G---NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhh------c---ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 58889999999999986 1 11222233344689999999999999999999999999999988755544433
Q ss_pred cCCccceEEEeec-Cc-eEEEecCCCeEEEee
Q 038568 276 WGHTGALLCLINV-GD-LLASGSADRTVRIWQ 305 (357)
Q Consensus 276 ~~~~~~v~~~~~~-~~-~l~~~~~dg~i~vw~ 305 (357)
......+..+.+. .+ .++++...|. +|.
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 2222233333333 33 6788877775 454
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=35.28 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=28.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
...|..++|+|...+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=49.30 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=85.9
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-------EEEEEecCCeEEEEecccCCce
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-------LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
|..+.....++-.|++ .++.+....-+.. |+-+.+.|+.+ .-+.|-.|+.|.-||++-...-
T Consensus 349 l~~~~~~~~l~klDIE----------~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIE----------RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred eeCCCCcCcceeeecc----------cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 5666667778888887 5677777776655 77777777543 2345667888999999843321
Q ss_pred eeeeeccCC----ccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 270 VFAEALWGH----TGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 270 ~~~~~~~~~----~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.+....+| .....|++-.++ +|++|+.+|.||+||- .+ .+....+.+-..+|..+..+.+|+
T Consensus 418 -kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~--~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 418 -KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IG--RRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred -eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hh--hhhhhcccccCCceeeEEeeccCc
Confidence 11111222 233456666666 9999999999999997 33 234455778889999999999998
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.19 Score=44.87 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=46.2
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCC-CCce-------EEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-SGSV-------KSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-~~~v-------~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..+++++.+ .|+-.|. .+++.+-.+...... .... ..+++..+.++.++.|+.+.-.|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 6677777777 9999999 888887766531100 0010 123444556888888999999999998865443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.11 Score=41.19 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=105.0
Q ss_pred cccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEE-EeCCCeEEEEEcccccc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDH 216 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~ 216 (357)
+-...+.++.|+| +.|++......-.++=...|+.+.+++...-.....+.+..++.++. --.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4455699999999 78888888888778877788888887544444556778887776444 44577888877652211
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc-------cceEEEeecC
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT-------GALLCLINVG 289 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~ 289 (357)
........-.+............++|+|..+.|+.+-+-+-+.||................+. ..+.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 111111111122222225567889999988888888887778888776433211121111121 2345566664
Q ss_pred c---eEEEecCCCeEEEeeCCC
Q 038568 290 D---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 290 ~---~l~~~~~dg~i~vw~~~~ 308 (357)
. +|+-+.+++.+.-.|...
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCcEEEEecCCceEEEEecCC
Confidence 3 777777788777777654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.24 Score=44.65 Aligned_cols=226 Identities=15% Similarity=0.224 Sum_probs=121.9
Q ss_pred cceEEEeeCC-------ceEEEeccCCc--cccceeccccCCCCceEEEEEecCc-eEEeecC------CeEEEEecCCc
Q 038568 39 NSLLYAASLN-------EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK-IFTAHQD------CKIRVWKITAS 102 (357)
Q Consensus 39 ~~~l~t~~~d-------~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d------~~i~vwd~~~~ 102 (357)
+.+++.||.+ .+..+|. .+. .....+. ....-.+++..++. .++||.| .++..||....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~-~~~~w~~~a~m~----~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDP-KTNEWSSLAPMP----SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecC-CcCcEeecCCCC----cccccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 5556666522 6778887 543 2222332 44455677777777 7888888 34677887776
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCe-----EEEEEcCcchhhhh
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRS-----FKIWNASNYKCLES 177 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~ 177 (357)
+... +.... ................+.|+.||. +-.||..+.+--..
T Consensus 360 ~W~~-~a~M~---------------------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 360 QWTP-VAPMN---------------------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred ceec-cCCcc---------------------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 6433 22211 111222222333367788888864 66777766442221
Q ss_pred ccccccccEEEEEEecCCe-EEEEeCCC------eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 178 VNKAHEDAVNAVVVSDNGV-VYTGSADG------RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
-.......-.+++ .-+|+ .++|+.++ ++..||.. ......+..+........ ++. -++.+.+
T Consensus 412 a~m~~~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~--------t~~W~~~~~M~~~R~~~g-~a~-~~~~iYv 480 (571)
T KOG4441|consen 412 APMLTRRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPE--------TNTWTLIAPMNTRRSGFG-VAV-LNGKIYV 480 (571)
T ss_pred CCCCcceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCC--------CCceeecCCcccccccce-EEE-ECCEEEE
Confidence 1011111111222 23454 66676443 46677765 123333333332222222 222 2567888
Q ss_pred EEecCCe-----EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC-----eEEEeeCCCC
Q 038568 251 SGGCDRW-----IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR-----TVRIWQRGKE 309 (357)
Q Consensus 251 ~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 309 (357)
.|+.|+. |..||..+.+-. ...........+-.....+...++|+.|| +|..||..+.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ECCccCCCccceEEEEcCCCCcee-EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 8887763 777888866432 33334444455555667777888888875 5777777765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.17 Score=41.42 Aligned_cols=117 Identities=10% Similarity=0.095 Sum_probs=67.4
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
|+-+|. .+..+..+ ..+-..-+.|+|+||+ .|. +=+..+.|.-|++........ ............+..-.++
T Consensus 145 lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~---~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG---GRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC---CcceEEEccCCCCCCCceE
Confidence 444443 34444333 3445566789999999 344 444458888887752111000 0111222223456667788
Q ss_pred EecCCCEEEEEecCC-eEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 242 LNGDGSLLFSGGCDR-WIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
...+|.+.+++..+| .|.+|+.+ ++....+.. ....+.+++|-+
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~FgG 264 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFGG 264 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEeC
Confidence 888998776555554 89999998 664433332 335567777766
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.17 Score=41.19 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=74.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
...+..+...+ .++++++......-||.-.. .-..........|..|.|.|++.|......|.|++=+... .
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~-----~ 217 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD-----D 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT-----E
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC-----C
Confidence 46677777777 55555554444556774321 1222223456889999999999766666899998877220 0
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-CceEEEecCC
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-GDLLASGSAD 298 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 298 (357)
...-.+.........-.+..++|.+++...++|+ .|.+ +...+.++..........-......+.|. ++.-.+-+.+
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 0101111111222233478899998877776665 4433 44555566544443333334456666664 4566666778
Q ss_pred CeEEEe
Q 038568 299 RTVRIW 304 (357)
Q Consensus 299 g~i~vw 304 (357)
|.|--|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.12 Score=39.43 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=77.4
Q ss_pred cccEEEEEEecCCeEEEEeCC----------CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE-E
Q 038568 183 EDAVNAVVVSDNGVVYTGSAD----------GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-S 251 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 251 (357)
....+.-..+|+|++..|... |.++.|-.. ..+..+...-.--+.++|+.+.+.+. +
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~------------h~v~~i~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG------------HQVELIWNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC------------CCceeeehhccCCccccccccCcEEEEE
Confidence 445666677899976666432 334444322 01111111122235788988776554 4
Q ss_pred EecCCeEEEEe--cccCCce-----eeeeecc--CCcc-ceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 252 GGCDRWIVVWE--RERDHRM-----VFAEALW--GHTG-ALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 252 ~~~dg~i~vwd--~~~~~~~-----~~~~~~~--~~~~-~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
-+.+-+|.-|| ..++... .-++... .+.. .=+++.-++++.++.-..++|...|..++ +.+.++.-.
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---K~L~eiklP 252 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---KILLEIKLP 252 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---cEEEEEEcC
Confidence 45566787777 4443211 1111111 1111 11445556667788888899999999998 556666666
Q ss_pred cCceEEEEEeeC
Q 038568 322 EKPVKSLVAISS 333 (357)
Q Consensus 322 ~~~v~~~~~~~~ 333 (357)
...|++++|--.
T Consensus 253 t~qitsccFgGk 264 (310)
T KOG4499|consen 253 TPQITSCCFGGK 264 (310)
T ss_pred CCceEEEEecCC
Confidence 888999999643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=41.81 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=88.7
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEE-EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGVVYTGSADGRIRVW-ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.....+..+.+.|++.++..+..|.+..- |-. ....... ...-...++.+.+.++++.++++ ..|.++
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g--------g~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPG--------QTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCCceEEEEcCCC--------CCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 33567889999999876666667766532 211 1112222 22345678899999998877665 567665
Q ss_pred EEecccCCceeeeeeccC-CccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWG-HTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+=..+.+........... ....+..+.+.++ .++.++.+|.+. .....++.++.+.....-......+.|..+..
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-- 315 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-- 315 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--
Confidence 323444443222211101 1234566677655 566666778665 45555555554432222234678888887765
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
.++ .+..|.|.-|+
T Consensus 316 -----~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 -----GFV-LGQRGVLLRYV 329 (334)
T ss_pred -----eEE-ECCCceEEEec
Confidence 555 45678876653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.18 Score=43.50 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=93.7
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe---ecC-CeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA---HQD-CKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~---~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.+.+=|. + +.....+.. ....+..-+|+|++ ++-. ... ..+.++++++++.......
T Consensus 174 ~l~~~D~-d-g~~~~~l~~---~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------------ 236 (425)
T COG0823 174 ELALGDY-D-GYNQQKLTD---SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------------ 236 (425)
T ss_pred eEEEEcc-C-CcceeEecc---cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc------------
Confidence 3444443 2 444444443 45566777888876 2211 122 4588889888765444331
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV- 196 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 196 (357)
.+.-..-+|+| ..+++...||. |.+.|+.... +..+ ....+.-..=.|+|+|.
T Consensus 237 -------------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~L-t~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 237 -------------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRL-TNGFGINTSPSWSPDGSK 295 (425)
T ss_pred -------------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceec-ccCCccccCccCCCCCCE
Confidence 12233446677 56667777776 5555766555 3334 22222223567899993
Q ss_pred -EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCe--EEEEecccCC
Q 038568 197 -VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRW--IVVWERERDH 267 (357)
Q Consensus 197 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~ 267 (357)
.++.+..|.-.||-... .......+......-..-.|+|||++++..+. +|. |.+.|+.++.
T Consensus 296 ivf~Sdr~G~p~I~~~~~---------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDL---------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeCCCCCcceEEECC---------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 55666677666665441 11111222222222226778999998887764 344 6666665554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.15 Score=43.96 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeEEEE--EccccccccccccceeeeeEeeccccce
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVW--ERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
..+.++|+++++..... .....-..-.|+|||. +++...||...+| |+. ... ...+....+.-
T Consensus 218 ~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~~~-----~~~Lt~~~gi~ 284 (425)
T COG0823 218 PRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD------GKN-----LPRLTNGFGIN 284 (425)
T ss_pred ceEEEEeccCCccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC------CCc-----ceecccCCccc
Confidence 46999999988765554 2344445568999993 6667777765554 554 111 22232222333
Q ss_pred eEEEEecCCCEEEEEec-CCe--EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecC-CCe--EEEeeCCCCc
Q 038568 238 NALALNGDGSLLFSGGC-DRW--IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSA-DRT--VRIWQRGKEN 310 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~--i~vw~~~~~~ 310 (357)
..=.|+|||+.++-.+. .|. |.+++++.... ...+..+........+.++++|+..+. +|. |.+.|+.++.
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 36678999997776554 454 56666665443 122222222233444555565555443 344 6666666653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.44 Score=42.96 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCEEEEEecC--------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----CeEEEeeCCCCcc
Q 038568 245 DGSLLFSGGCD--------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----RTVRIWQRGKENC 311 (357)
Q Consensus 245 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~ 311 (357)
+++.++.|+.+ ..+.+||..+.+-. ....+.........+...+..++.|+.+ +.+.+||..+. .
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN-T 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCcee-eCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC-E
Confidence 55666666643 23888998765421 2221111112223334556666777654 47888988875 3
Q ss_pred eeeeeeec
Q 038568 312 YRCMAFLE 319 (357)
Q Consensus 312 ~~~~~~~~ 319 (357)
+..+..+.
T Consensus 515 W~~~~~~p 522 (534)
T PHA03098 515 WTLFCKFP 522 (534)
T ss_pred EEecCCCc
Confidence 44444333
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00022 Score=63.77 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=90.0
Q ss_pred ccccccEEEEEEec---CeEEEEecCCeEEEEEcCc--chhhhhc----cccccccEEEEEEec---CC-eEEEEeCCCe
Q 038568 139 LEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN--YKCLESV----NKAHEDAVNAVVVSD---NG-VVYTGSADGR 205 (357)
Q Consensus 139 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~----~~~~~~~v~~~~~~~---~~-~l~~~~~d~~ 205 (357)
.+..+.+..+.|.. ..+. -.-|.+.+||+.. |+....+ .......+.-+.|.| +. ++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 46677888888866 2222 3346789998763 3333222 123334445566654 33 5777778888
Q ss_pred EEEEEccccccccccccceeeeeEeeccccceeEEE-----------EecCCCEEEEEecCCeEEEEecccCC--ceeee
Q 038568 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA-----------LNGDGSLLFSGGCDRWIVVWERERDH--RMVFA 272 (357)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~ 272 (357)
+++..+... ....+..|...+..++ .+|||..++.++.||.++.|.+.-.. ...+.
T Consensus 207 i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 207 IRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 888776511 1122334555444333 58999999999999999888764211 11123
Q ss_pred eeccCCc-cceEEEeecCc-----------eEEEec-CCCeEEEeeCCCC
Q 038568 273 EALWGHT-GALLCLINVGD-----------LLASGS-ADRTVRIWQRGKE 309 (357)
Q Consensus 273 ~~~~~~~-~~v~~~~~~~~-----------~l~~~~-~dg~i~vw~~~~~ 309 (357)
.....|. .+-.|.-++.. ++++++ .+.-+++|.-..-
T Consensus 276 hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 3344454 33344434321 344444 4567888987653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.38 Score=41.15 Aligned_cols=175 Identities=12% Similarity=0.128 Sum_probs=103.4
Q ss_pred EEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeC---CCeEEEEEcccccccc
Q 038568 146 SDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA---DGRIRVWERSVVDHNK 218 (357)
Q Consensus 146 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~ 218 (357)
..++.++ +..+....++.|.+.|..+.+....... ......+++++++ .+.++.. ++.+.+.|..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~------ 148 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA------ 148 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCC------
Confidence 3455555 3555555678999999888777777632 2366788999988 4444433 6888888876
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCcee-eee-eccCCc-cceEEEeecCceEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMV-FAE-ALWGHT-GALLCLINVGDLLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~-~~~~~~-~~v~~~~~~~~~l~~ 294 (357)
..........-..+ ..++++|+|..++... .++.|.+.|........ ... ...... .....+..++..+..
T Consensus 149 ----t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 149 ----TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred ----CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEE
Confidence 33333333333344 8899999999666655 78899999977654321 000 011111 123445555553333
Q ss_pred ec-C--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 295 GS-A--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 295 ~~-~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.. . ++.+...|..++........ .+-. ....+...|++.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDPAGK 265 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccc-cccC-CCCceeECCCCC
Confidence 32 2 26888888887632221111 1111 355678888887
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.38 Score=41.11 Aligned_cols=216 Identities=12% Similarity=0.105 Sum_probs=125.4
Q ss_pred eEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 75 VKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 75 v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
-..++.++.+ +++...++.|.+.|..+.+....... +. .-..++++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----------------------------G~--~P~~~~~~ 124 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----------------------------GL--GPVGLAVD 124 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----------------------------cc--CCceEEEC
Confidence 3456666654 55566678899999666554433322 11 44567777
Q ss_pred c--CeEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccce
Q 038568 152 Q--GLMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 152 ~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+ +.+..+.. ++++.+.|..+.+.+... .....+ ..+++.|++. +++-..++.|.++|... .
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~-~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~----------~ 192 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATI-PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG----------N 192 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEE-ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC----------c
Confidence 7 45555544 689999999888887775 333334 8899999994 44445789999999761 1
Q ss_pred eeee-E---eeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe-c
Q 038568 225 MLVT-T---LVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG-S 296 (357)
Q Consensus 225 ~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~ 296 (357)
.... . ...-......+.++|++.++.+.... +.+...|..++...........-...-..+.+.+..+.+. +
T Consensus 193 ~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 193 SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 1111 0 11122334678999999976665544 5888988887654322111111111223445555555544 3
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
..+.+.+-|..+............-...+..+++.+.
T Consensus 273 ~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 273 QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 4578888888875322222222222233455555544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.071 Score=49.97 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=78.6
Q ss_pred EEEEecCCeEEEEEcCcchhhhh-----c-----cccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccccccc
Q 038568 155 MYSVSWDRSFKIWNASNYKCLES-----V-----NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~~~~~-----~-----~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
++..+.+-.|..||+++...-.. + .........++.|+|.- ..++...|+.|++..+..
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~--------- 187 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ--------- 187 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh---------
Confidence 33444455789999876432110 0 01223445678888865 377788899999988761
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCc
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD 290 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 290 (357)
....... .......++++|+|.|+.++.|-.+|++.-|...-.. ...+..... ....|.++.|-..
T Consensus 188 ~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 188 LAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecc
Confidence 1111112 2245678999999999999999999999999765321 111222211 2477899999776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.43 Score=43.02 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=34.3
Q ss_pred CCCEEEEEecC------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC--------CeEEEeeCCCC
Q 038568 245 DGSLLFSGGCD------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD--------RTVRIWQRGKE 309 (357)
Q Consensus 245 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~vw~~~~~ 309 (357)
++++.+.|+.+ +.+..||+.+.+- .....+........++...+..++.||.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56667777632 4588899876532 12222111111223344555566666643 23888998875
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.47 Score=40.63 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=81.4
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-----CCCEEEEEecCCeEEEEecccCCc--
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-----DGSLLFSGGCDRWIVVWERERDHR-- 268 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~-- 268 (357)
++++|+..|.+++|+.. ........+..-..-..+|..+...+ +...||+ -.-..+.||.+.....
T Consensus 39 ~IivGS~~G~LrIy~P~------~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPS------GNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred EEEEeccccEEEEEccC------CCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 69999999999999985 22211112222223457787777543 2234444 5567788888742211
Q ss_pred ----eeeeeeccCCccceE----EE-eec----CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 269 ----MVFAEALWGHTGALL----CL-INV----GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 269 ----~~~~~~~~~~~~~v~----~~-~~~----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
...+.....|.-.-. +. .|. .++|++-+.||.+.+|+-+.- .....+.. .--.--+.+.+...
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---~f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---AFSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---EEEEEcCC-CCCCcCeEEeecCC
Confidence 011112222222211 11 222 249999999999999998763 21222222 22233467888777
Q ss_pred CCCCCeEEEEEcCCCCeEEec
Q 038568 336 SASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|++++.+..+.-|
T Consensus 188 -------sfvt~sss~~l~~Y 201 (418)
T PF14727_consen 188 -------SFVTASSSWTLECY 201 (418)
T ss_pred -------EEEEecCceeEEEe
Confidence 88888888777655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.65 Score=41.97 Aligned_cols=178 Identities=10% Similarity=0.060 Sum_probs=96.3
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|+|++. +|+.+..+.- ..+.+..+.|+.+. |++...+|++.+|++..... ......
T Consensus 65 ~I~If~~--sG~lL~~~~w---~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i-e~~svg---------------- 122 (829)
T KOG2280|consen 65 YIRIFNI--SGQLLGRILW---KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI-ESNSVG---------------- 122 (829)
T ss_pred eEEEEec--cccchHHHHh---cCCCeeeecccCCceEEEEeccceEEEeecchhhh-cccccc----------------
Confidence 6889987 5677776655 44588899999987 99999999999999864322 211100
Q ss_pred EEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccc--cccEEEEEEecCCe----EEEEe
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH--EDAVNAVVVSDNGV----VYTGS 201 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~----l~~~~ 201 (357)
.......|..+.+..+-++.-..+|.+.+-+-.....+...+... .-+-.|-...++.+ ++-..
T Consensus 123 ----------~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 123 ----------FESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred ----------cccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec
Confidence 002223344444444444444555665554433322333332111 11213333333331 11111
Q ss_pred -CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 202 -ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 202 -~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
..+ ..++... ........+....+.+..+..||+.++|+.-...|.|.+-+.+..+.
T Consensus 193 ~~v~-~~~~q~~---------~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 193 VAVG-LHICQVE---------ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hhhh-hccccee---------cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 111 0111111 01111111222235677889999999999999999999998875553
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.62 Score=41.70 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=112.8
Q ss_pred cCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecC
Q 038568 82 ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWD 161 (357)
Q Consensus 82 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 161 (357)
.+.++.++.++.|.-.|..+++..-............ . ......-..+++....++.++.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~------------------~-~~~~~~~rg~av~~~~v~v~t~d 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP------------------V-MCCDVVNRGVALYDGKVFFGTLD 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCccccc------------------c-cccccccccceEECCEEEEEcCC
Confidence 3447778888899999999887654443211000000 0 00000001123444677888889
Q ss_pred CeEEEEEcCcchhhhhcccccc---ccEEEEEEecCCeEEEEeC------CCeEEEEEccccccccccccceeee-----
Q 038568 162 RSFKIWNASNYKCLESVNKAHE---DAVNAVVVSDNGVVYTGSA------DGRIRVWERSVVDHNKERKSRHMLV----- 227 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~----- 227 (357)
+.|.-.|.++++.+........ ..+.+--.--++.++++.. +|.|..+|.++++..-.........
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999998877632111 1122111112556665543 6889888887443321111000000
Q ss_pred ----------------eEeecccccee-EEEEecCCCEEEEEecC-----C-----------eEEEEecccCCceeeeee
Q 038568 228 ----------------TTLVKHRSTVN-ALALNGDGSLLFSGGCD-----R-----------WIVVWERERDHRMVFAEA 274 (357)
Q Consensus 228 ----------------~~~~~~~~~v~-~~~~~~~~~~l~~~~~d-----g-----------~i~vwd~~~~~~~~~~~~ 274 (357)
.....-...+. .+++.|+..+++.+..+ + .|.-.|+++++..-.++.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 00000111222 45777766677666532 2 577778888876544433
Q ss_pred ccCCc--------cce-EEEeecCc---eEEEecCCCeEEEeeCCCCcc
Q 038568 275 LWGHT--------GAL-LCLINVGD---LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 275 ~~~~~--------~~v-~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~ 311 (357)
. .|. .++ ..+..++. .++.+..+|.+++.|-++++.
T Consensus 290 ~-~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 290 T-PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred C-CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2 221 112 22334554 788999999999999999854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0091 Score=33.03 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
...|..++|+|..+ +||.+..||.|.+|
T Consensus 11 ~~~v~~~~w~P~md-------LiA~~t~~g~v~v~ 38 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-------LIALGTEDGEVLVY 38 (47)
T ss_pred CCcEEEEEECCCCC-------EEEEEECCCeEEEE
Confidence 45699999999999 99999999999876
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.59 Score=40.04 Aligned_cols=278 Identities=11% Similarity=0.079 Sum_probs=135.9
Q ss_pred cceEEEeeCC-ceEEEeccCCcc-cc-ceeccccCCCCceEEEEEe---cC---ceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYS-HV-DTFSNDLSSSGSVKSITFH---IT---KIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~-~~-~~~~~~~~~~~~v~~l~~~---~~---~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
.+.|++||.. .++||+. .... .. ..+-. ..-..+|..+..- ++ ..++.-.-..+.||.+.........
T Consensus 37 ~d~IivGS~~G~LrIy~P-~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDP-SGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred ccEEEEeccccEEEEEcc-CCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc-
Confidence 4689999988 9999998 4322 11 11111 1256788888754 21 2333455677888877322110000
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccc--cccEEEEEEec-------CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH--WDAVSDLVVKQ-------GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
.+...+.. ...| ......++.-+ .+++.=+.||.+.+++-+.......+
T Consensus 114 ---------------g~~~~L~~-----~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-- 171 (418)
T PF14727_consen 114 ---------------GNQYQLEL-----IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-- 171 (418)
T ss_pred ---------------CcEEEEEE-----EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--
Confidence 00000000 0011 11222333322 67888899999999997654322222
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc-------------cceeeeeEeeccccceeEEE---Ee
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK-------------SRHMLVTTLVKHRSTVNALA---LN 243 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~---~~ 243 (357)
..---...+.+.+.. .|++++.+..+..|............ ....+--.+. -...+..+. ++
T Consensus 172 p~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFS 250 (418)
T ss_pred CCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcC
Confidence 112222345666654 68999999999999875432221110 1111111111 122333333 32
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee----cCc---eEEEecCCCeEEEeeCCCCcceeeee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN----VGD---LLASGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
.....+++-+ ...+.+.+.. + .+...+.+............ .++ .++.++.++.+.||.=.+ .+-
T Consensus 251 ~~~~~IvvLg-er~Lf~l~~~-G-~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~W 322 (418)
T PF14727_consen 251 SSESDIVVLG-ERSLFCLKDN-G-SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVW 322 (418)
T ss_pred CCCceEEEEe-cceEEEEcCC-C-eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEE
Confidence 2222333333 3446666553 3 33344444332222221111 222 589999999999997553 222
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+....|| ++....-.. -. ..|++-+.+|.+.+
T Consensus 323 sA~l~~~PV-al~v~~~~~--~~--G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 323 SAQLPHVPV-ALSVANFNG--LK--GLIVSLSDEGQLSV 356 (418)
T ss_pred ecCCCCCCE-EEEecccCC--CC--ceEEEEcCCCcEEE
Confidence 222233343 343332110 00 18899999998865
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00021 Score=59.60 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=142.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
+..++.++.+ .+..||- .++...... .++....++|.-++ ++.+-..+.+.+||+.+....+.-...
T Consensus 46 ~~nlavaca~tiv~~YD~--agq~~le~n----~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg--- 116 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDK--AGQVILELN----PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG--- 116 (615)
T ss_pred CCceehhhhhhHHHhhhh--hcceecccC----CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC---
Confidence 5568888888 9999986 445554444 55667788888654 666777899999999865432111100
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
.|.... +.|++ ..++.+...|.+.+++..+.+.+... ..|...+.++++.
T Consensus 117 -------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 117 -------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVT 168 (615)
T ss_pred -------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEec
Confidence 122222 55666 66777778899999999888877776 5599999999999
Q ss_pred cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEE---EecCCCEEEEEecCCeEEEE--eccc
Q 038568 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALA---LNGDGSLLFSGGCDRWIVVW--ERER 265 (357)
Q Consensus 193 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~---~~~~~~~l~~~~~dg~i~vw--d~~~ 265 (357)
+.++.+.++.|..+.+-.... ......+..+... .-..++ |..-|..+.+.-. |.+.+. ....
T Consensus 169 lEd~vil~dcd~~L~v~~qeg---------eta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE 238 (615)
T KOG2247|consen 169 LEDYVILCDCDNTLSVTTQEG---------ETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNE 238 (615)
T ss_pred ccceeeecCcHHHHHHhhhcc---------ceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcC
Confidence 999888887776654433220 0000111111000 001111 2223333332211 111111 1111
Q ss_pred CCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 331 (357)
......+ .+....+.+.|..|-.+ +|..+.+-|.|..-...+++....+.....|.+.+.+++.+
T Consensus 239 ~D~pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavs 304 (615)
T KOG2247|consen 239 LDEPVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVS 304 (615)
T ss_pred CCCccce-EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHH
Confidence 1111122 33345566788888888 88888888888888877765433333333566666555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.74 Score=41.65 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=48.6
Q ss_pred ccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
+...++..+| +..-..+.--.|+|+++ +|+.+..+ .-....+-.+.|+.+..|++...+|++++|++-
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~-~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRI-LWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred CCceEEEecccccccccccceeEEEEec-cccchHHH-HhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 3444556666 21111134457999997 57777777 344448889999999999999999999999986
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.6 Score=42.29 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=86.2
Q ss_pred ccEEEEEEec--CeEEEEe------cCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCC-CeEEEEE
Q 038568 143 DAVSDLVVKQ--GLMYSVS------WDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD-GRIRVWE 210 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-~~i~i~d 210 (357)
..+.+.+.++ +.++... .|. .|.+++. +.....+.. ......-.|+|+| .+.+.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3566777887 4444433 233 4555554 222233312 2237788999996 45555432 1222222
Q ss_pred ccccccccc-cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE---EecccCCceee--eeecc-CCccceE
Q 038568 211 RSVVDHNKE-RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV---WERERDHRMVF--AEALW-GHTGALL 283 (357)
Q Consensus 211 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~~~--~~~~~-~~~~~v~ 283 (357)
-........ ......... .....|..+.|+|||..++... +++|++ -....+. ... ...+. +-...+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence 110000000 000001111 2345799999999999888765 577777 4433333 111 11121 2223357
Q ss_pred EEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 284 CLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 284 ~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+.|.++ .|+++..++.-.+|.+.-.........-.....++..++-.++
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 7888776 4555555554555654422111111111112566777777763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.97 Score=40.99 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=69.9
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee-cccccee
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTVN 238 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 238 (357)
.+.+.+.++..++... .....|..+.|+||| +++... ++.|.+--+.... .+.........+. .....+.
T Consensus 429 ~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~---~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 429 TGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE---DGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC---CCceeecccEEeecccCCccc
Confidence 3456555666554433 234569999999999 444433 5777774333110 1110111111222 2333468
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEe
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIW 304 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 304 (357)
.+.|.+++.++ ++..++.-.+|.+.-.........-......+..++-.+..++....+|.+.+=
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEec
Confidence 89999988754 555555555555432221111101111245667777777766677777755443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.54 Score=37.53 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=76.9
Q ss_pred cEEEEEEecCCe-EEEEe---CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 185 AVNAVVVSDNGV-VYTGS---ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 185 ~v~~~~~~~~~~-l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
.+.+.++++++. ++... ....++++... ....... ....+..-.|++++...+....+...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-----------~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-----------GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-----------Ccceeec--cCCccccccccCCCCEEEEEcCCCceEE
Confidence 688899999994 43333 33445554432 1111111 2236778899999877777666666676
Q ss_pred Ee-cccCCceeeeeeccCCccceEEEeecCc-----eEEEecCCCeEEEeeCCCCcce------eeeeeecCCcCceEEE
Q 038568 261 WE-RERDHRMVFAEALWGHTGALLCLINVGD-----LLASGSADRTVRIWQRGKENCY------RCMAFLEGHEKPVKSL 328 (357)
Q Consensus 261 wd-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~h~~~v~~~ 328 (357)
+. ..++......-....-...|..+.++++ +++....++.|.+=-+...... ............++++
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee
Confidence 64 2222221111111111127888888887 3444445677887765432111 1122222345689999
Q ss_pred EEeeCCC
Q 038568 329 VAISSSS 335 (357)
Q Consensus 329 ~~~~~~~ 335 (357)
.|.++..
T Consensus 172 ~W~~~~~ 178 (253)
T PF10647_consen 172 AWSDDST 178 (253)
T ss_pred eecCCCE
Confidence 9999987
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.64 Score=41.91 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=71.0
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec----CceEEEecCCCeEEE
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV----GDLLASGSADRTVRI 303 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~v 303 (357)
..+...-....-+.-+.-++.-++-+...++.|||.+.+. + ...........|..+.|. ++.+++.|-.+.|.+
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-l-E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-L-EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE-E-EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 3333333444555555555555555556679999998765 2 222222456788888775 337777777888888
Q ss_pred eeCC------CCcceeeeeee--cCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRG------KENCYRCMAFL--EGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~------~~~~~~~~~~~--~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+--. .+..+..+..+ ..|. .+|.+..|.++|. |+.|+ ++.+.|+|
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--------LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--------LVVGS-GNQLFVFD 154 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe--------EEEEe-CCEEEEEC
Confidence 8531 22223334333 3344 6899999999995 44444 34566654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.21 Score=42.12 Aligned_cols=139 Identities=10% Similarity=0.096 Sum_probs=88.5
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
+.+-|...++.+.+-..|.+.=|-... .. ...+...-....++|.++.|++|.+.|++--.+.+|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkg------pn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKG------PN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeC------CC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 344555545444444455565666541 11 22333333445679999999999999999999999999998543
Q ss_pred Cce-eeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 267 HRM-VFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 267 ~~~-~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+.. ......+.....|..+.|..+ -+|.-...| +-+|.....+ +.+...+.|+-.|+-..|+++.+
T Consensus 99 ~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 99 NSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred chhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccc
Confidence 321 112223334456888889876 555555444 7777766542 44556667788888888988876
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=41.45 Aligned_cols=69 Identities=10% Similarity=0.225 Sum_probs=45.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCC-----ceEEEEEe------------------cCceEEeecCCeE
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG-----SVKSITFH------------------ITKIFTAHQDCKI 94 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~------------------~~~l~~~~~d~~i 94 (357)
+..|+.++.+ .|.-.|. .+++.+-.+........ ....+++. .+.++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 7778888887 9999999 88888777653111110 01223332 1248888889999
Q ss_pred EEEecCCccceeee
Q 038568 95 RVWKITASRQHQLV 108 (357)
Q Consensus 95 ~vwd~~~~~~~~~~ 108 (357)
.-.|.++++....+
T Consensus 273 iALDA~TGk~~W~f 286 (764)
T TIGR03074 273 IALDADTGKLCEDF 286 (764)
T ss_pred EEEECCCCCEEEEe
Confidence 99999998765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.89 Score=38.47 Aligned_cols=51 Identities=4% Similarity=0.175 Sum_probs=34.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
.+.|+|+ ++++.. .+.. ....+....|+|++ .++--.++.|.+++..+++.
T Consensus 24 ~y~i~d~-~~~~~~-~l~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 24 DYYIYDI-ETGEIT-PLTP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp EEEEEET-TTTEEE-ESS----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred eEEEEec-CCCceE-ECcC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 7889999 764433 3332 35678899999998 44444578999999877643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.74 Score=36.45 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=102.0
Q ss_pred ccEEEEEE-ec-CeEEEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 143 DAVSDLVV-KQ-GLMYSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 143 ~~v~~~~~-~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.-...+.| .. .++-+.+.-| .|+.+|+.+++.+........-.-..++...+....-.-.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~------ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN------ 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc------
Confidence 34456777 44 4555665555 79999999998776653333334445666655555556778999999987
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeecCc-eEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINVGD-LLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~-~l~~ 294 (357)
..+.+.++. ..+.=+.++ .+++.|+.+.....|+.+|..+-+....+.... ...+ +.-+.+-.. ..|=
T Consensus 119 ----tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 119 ----TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp ----TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEE
T ss_pred ----cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEE
Confidence 333444443 223445666 466777777777889999988665443333221 2222 344444433 3333
Q ss_pred ecCCCeEEEeeCCCCcceeeeee------e------cCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAF------L------EGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~------~------~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.=....|...|..+|+....+.. . .....-.++|++.|... .+++||-
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~vTGK 250 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLFVTGK 250 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEEEEET
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEEEEeC
Confidence 33445566667776632221110 0 01135688999999876 5777773
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.085 Score=49.51 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=67.4
Q ss_pred ccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc
Q 038568 143 DAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 143 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
....++.|+| ...+....|+.|++..+........- .......++++|+|.| +++.|-..|++.-|.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---- 230 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---- 230 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc----
Confidence 4567888998 67788888999999877543322222 3566788999999999 5999999999998876510
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.....+..... ....|.++.|-....++++
T Consensus 231 --ik~~ip~Pp~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 231 --IKSEIPEPPVE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --eeecccCCCcC-CCcceeEEEEecceeEEEE
Confidence 00000000011 1467889999876555554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.2 Score=37.24 Aligned_cols=155 Identities=9% Similarity=0.020 Sum_probs=83.2
Q ss_pred cccEEEEEEec-CeEEEEecCCeEEEE-EcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 142 WDAVSDLVVKQ-GLMYSVSWDRSFKIW-NASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 142 ~~~v~~~~~~~-~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
...+.++.+.+ ..++..+..|.+..- |- .++.-..........++++.+.+++.++..+..|.+++=... .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d------~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD------D 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC------C
Confidence 45678888888 555666666765532 21 122222222345567889999998876666677876532111 1
Q ss_pred cccceeeeeEe-eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee-cCceEEEecC
Q 038568 220 RKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN-VGDLLASGSA 297 (357)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 297 (357)
+. ..+....- ......+..+.+.|++..+++ +.+|.+. .....++..........-......+.+ +++..+..+.
T Consensus 245 G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 245 LE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CC-ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 00 11111110 112235778889988775554 4667554 445555543332211122233444554 4556667777
Q ss_pred CCeEEEeeC
Q 038568 298 DRTVRIWQR 306 (357)
Q Consensus 298 dg~i~vw~~ 306 (357)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888877754
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1 Score=41.20 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=73.8
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecccCC-----------c------eeeeeeccCCccceEEEeec--C--ceE
Q 038568 236 TVNALALNG--DGSLLFSGGCDRWIVVWERERDH-----------R------MVFAEALWGHTGALLCLINV--G--DLL 292 (357)
Q Consensus 236 ~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~-----------~------~~~~~~~~~~~~~v~~~~~~--~--~~l 292 (357)
.|+.|.... +...|+.+..||.|.+|..++-. . +.+...+ .-...++.+++. . .+|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 355565544 45689999999999999763210 0 0011111 123456777776 3 388
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++....|.||-+...........-..|..-|-+|+|.++.... .|...|++++-.|.+-+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~-~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP-NGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC-ccceEEEEEeccCcEEEEE
Confidence 888888888888765421111111112366679999999987422 2224788899999988764
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.1 Score=40.47 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=67.0
Q ss_pred CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEe--cCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS--DNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
+.++... ....+.|||.+.+.....-.....+.|..+.|. |++ .+++.+..+.|.+|--...+.... .+...++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-CcccceeE
Confidence 3344433 345799999988774444322457889999997 566 477778888888886432221111 11223333
Q ss_pred Ee--eccc-cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 229 TL--VKHR-STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 229 ~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
.+ ..++ .+|.+..|.++|.+++.+ ++++.|+|-.
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 32 3343 678999999998655443 4568888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.4 Score=36.91 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=37.9
Q ss_pred ceEEEecCCCeEEEeeCCCCcceeeee-eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 290 DLLASGSADRTVRIWQRGKENCYRCMA-FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 290 ~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.++++.-..+.|....+.......... .+......+.++++.||+. +.++-+.+|.|.
T Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-------Lyv~~d~~G~iy 330 (331)
T PF07995_consen 272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-------LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-------EEEEE-TTTTEE
T ss_pred cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-------EEEEECCCCeEe
Confidence 366666667788888886543222222 2344555899999999997 777777788774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.2 Score=35.71 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....+.++.|+|+. |++......-.||=...++.+..+.... -..--.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------------------------~~DpE~I 134 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------------------------FSDPETI 134 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------------------------cCChhHe
Confidence 45569999999986 7777776776677666666554443211 1111223
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcch----------hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYK----------CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
.+.. .+.++--.++.+.++.+.... .+... ...+.....++|.|.+ .|+.+-+-.-+.||.+....
T Consensus 135 eyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 135 EYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred EEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 3333 233333344555555443321 12222 2225678899999987 58888888888888876211
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEeccc
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 265 (357)
..........+.....-.-..|.++.|++ .+.+|+.+.+++.+.-.|...
T Consensus 214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 10000000000000000123477888987 556777777788888777763
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.7 Score=37.05 Aligned_cols=140 Identities=17% Similarity=0.212 Sum_probs=68.0
Q ss_pred ccEEEEEEecCCeEEEEeC------------CC-eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 184 DAVNAVVVSDNGVVYTGSA------------DG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~------------d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.....|+|.++|.|.++.. .+ .|.+++-. ...........+...-.....+++.+++ |+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~------dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly 85 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDA------DGDGKYDKSNVFAEELSMVTGLAVAVGG--VY 85 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC------CCCCCcceeEEeecCCCCccceeEecCC--EE
Confidence 3456788899887666642 22 66666543 1111111222333333456889999888 44
Q ss_pred EEecCCeEEEEecccC-----CceeeeeeccC----CccceEEEeecCc---eEEEecC------------------CCe
Q 038568 251 SGGCDRWIVVWERERD-----HRMVFAEALWG----HTGALLCLINVGD---LLASGSA------------------DRT 300 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~---~l~~~~~------------------dg~ 300 (357)
+++.....++.|.... +.......+.. +......+.+.++ ++..++. .|.
T Consensus 86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4444443334354321 21112222322 1233456666665 3333421 134
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|.-++...++ .+. ...++ .....++|++++.
T Consensus 166 i~r~~pdg~~-~e~--~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 166 LFRYNPDGGK-LRV--VAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred EEEEecCCCe-EEE--EecCc-CCCccceECCCCC
Confidence 5555555431 111 12333 3356899999887
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.9 Score=37.43 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=94.2
Q ss_pred cEEEEEEec--CeEE-EEecCC----eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEe-C----------CC
Q 038568 144 AVSDLVVKQ--GLMY-SVSWDR----SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGS-A----------DG 204 (357)
Q Consensus 144 ~v~~~~~~~--~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~----------d~ 204 (357)
.+....++| ++++ +.+..| .|+++|+.+++.+... . .......+.|.+++. |+... . ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-I-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-E-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-c-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344667777 5555 334445 4999999998765432 1 111222399999973 43333 2 22
Q ss_pred eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec---C-CeEEEEecccC----Cceeeeeecc
Q 038568 205 RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---D-RWIVVWERERD----HRMVFAEALW 276 (357)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~vwd~~~~----~~~~~~~~~~ 276 (357)
.|+.|++. +.......+............+..++++++|+.... + ..+++.++... .....+. .
T Consensus 203 ~v~~~~~g------t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~ 274 (414)
T PF02897_consen 203 QVYRHKLG------TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--P 274 (414)
T ss_dssp EEEEEETT------S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--E
T ss_pred EEEEEECC------CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--C
Confidence 36777765 222222233333222222567888999998776443 3 45888888764 1222221 1
Q ss_pred CCccceEEEeecCc--eEEEe--cCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 277 GHTGALLCLINVGD--LLASG--SADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
...+....+...++ ++.+- ...+.|...++.+.........+-.+.. .+..+....+ .+++..-.+
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~Lvl~~~~~ 346 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD--------YLVLSYREN 346 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT--------EEEEEEEET
T ss_pred CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC--------EEEEEEEEC
Confidence 22233333444455 33332 2246777778877643122224444544 3545544333 245555555
Q ss_pred Ce
Q 038568 351 GE 352 (357)
Q Consensus 351 g~ 352 (357)
+.
T Consensus 347 ~~ 348 (414)
T PF02897_consen 347 GS 348 (414)
T ss_dssp TE
T ss_pred Cc
Confidence 54
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.1 Score=40.87 Aligned_cols=152 Identities=10% Similarity=0.141 Sum_probs=87.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhh------hcc---------------ccccccEEEEEEecCC---eEEEEeCCCeEEE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLE------SVN---------------KAHEDAVNAVVVSDNG---VVYTGSADGRIRV 208 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i 208 (357)
++++.+. .+.|.||++....... .+. ......|+.|....=+ .|+.+..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4555544 6789999876422211 110 0123346666554423 4899999999999
Q ss_pred EEccccccc--------cc--cccceeeeeEeeccccceeEEEEe--cCCCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 209 WERSVVDHN--------KE--RKSRHMLVTTLVKHRSTVNALALN--GDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 209 ~d~~~~~~~--------~~--~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
|..+..-.. .. .....++...+. ....+++++++ ...++||+++....|.||-............-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 987532110 00 000111222222 34578999998 788899999888888888665421111111111
Q ss_pred CCccceEEEeecC-----c---eEEEecCCCeEEEeeC
Q 038568 277 GHTGALLCLINVG-----D---LLASGSADRTVRIWQR 306 (357)
Q Consensus 277 ~~~~~v~~~~~~~-----~---~l~~~~~dg~i~vw~~ 306 (357)
.+...|-+++|-+ . .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2444555565532 2 6788889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.11 Score=27.93 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.0
Q ss_pred cceeEEEEecCC---CEEEEEecCCeEEEEecccC
Q 038568 235 STVNALALNGDG---SLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 235 ~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~ 266 (357)
+.+.++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 48888888899999999953
|
It contains a characteristic DLL sequence motif. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.1 Score=39.21 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=96.7
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
++.|+-...+.||+++- . ..+..+. ..+.++....+.+ .++.++.++.+...++...........
T Consensus 461 g~~lvQvTs~~iRl~ss-~--~~~~~W~----~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~------ 527 (1096)
T KOG1897|consen 461 GNQLVQVTSNSIRLVSS-A--GLRSEWR----PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK------ 527 (1096)
T ss_pred CceEEEEecccEEEEcc-h--hhhhccc----CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh------
Confidence 44555555556777775 3 3444555 3344444443333 377777777777777765542111111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec-----C---eEEEEecCCeEEEEEcCc-chhhhhccc---cccc
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----G---LMYSVSWDRSFKIWNASN-YKCLESVNK---AHED 184 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~l~~~~~dg~i~iwd~~~-~~~~~~~~~---~~~~ 184 (357)
.....|.|+.++| + +++.|..+..+.+.-.-. ...+..... .-+.
T Consensus 528 -----------------------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 528 -----------------------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred -----------------------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 3456789998886 3 788888877665543322 111111101 1223
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.|.-..+-.+. +|+++..||.+.-|.+.... ......+...-...|+.--.|+..++.-+.+..|.-..+|..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t------g~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~ 658 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINT------GQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS 658 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEccc------ceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec
Confidence 34444444434 79999999999888766211 111111111112345555556665554444445665666655
Q ss_pred c
Q 038568 264 E 264 (357)
Q Consensus 264 ~ 264 (357)
+
T Consensus 659 n 659 (1096)
T KOG1897|consen 659 N 659 (1096)
T ss_pred C
Confidence 4
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.64 Score=44.76 Aligned_cols=162 Identities=10% Similarity=0.114 Sum_probs=93.0
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...=..+-+-|.. =+-.+.|+.+.+|+.+++.....+..+. ..|..+.
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~s------------------------------htIl~V~ 126 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLS------------------------------HTILKVG 126 (1311)
T ss_pred CcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchh------------------------------hhheeee
Confidence 33333445555543 4556678999999999876655554332 2222222
Q ss_pred --------Eec--CeEEEEecCCeEEEEEcCcchh---h------hhccccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 150 --------VKQ--GLMYSVSWDRSFKIWNASNYKC---L------ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 150 --------~~~--~~l~~~~~dg~i~iwd~~~~~~---~------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
|.| ++++..+.--.|.++-+.-.+. . ..+ ...+..|+++....+|+++-++.|| .+|.
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i-~~dg~~V~~I~~t~nGRIF~~G~dg--~lyE 203 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI-SVDGVSVNCITYTENGRIFFAGRDG--NLYE 203 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee-ecCCceEEEEEeccCCcEEEeecCC--CEEE
Confidence 222 3333333333455553321110 0 111 2235678899988899988888888 5565
Q ss_pred cccccccccccc--------------ceeeeeEee-ccccceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 211 RSVVDHNKERKS--------------RHMLVTTLV-KHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 211 ~~~~~~~~~~~~--------------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+.......-... -...+..+. .+..+|..++....-..+.+-+..|.|.+||+..
T Consensus 204 l~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 204 LVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 542221100000 000011222 5677999999998888999999999999999976
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.91 Score=39.20 Aligned_cols=143 Identities=11% Similarity=0.167 Sum_probs=86.9
Q ss_pred cceEEE-eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---------eEEeecCCeEEEEecCCccceee
Q 038568 39 NSLLYA-ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---------IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t-~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.++|.. |+.. .++--|+ +.++.+..... |... -+.|.|.. -+.|-.+..|.-.|.+-....-.
T Consensus 479 ssli~~dg~~~~kLykmDI-ErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDI-ERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cceEEecCCCcccceeeec-ccceeeeEeec---CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 344444 3344 7777788 78888888875 5444 56777752 34455555555556543321111
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAV 186 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 186 (357)
...... + .......+..-.. .+++.++..|.|++||--.-+....+ .+....|
T Consensus 553 v~esKd------------------------Y-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~lG~aI 606 (776)
T COG5167 553 VVESKD------------------------Y-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGLGDAI 606 (776)
T ss_pred eeeehh------------------------c-cccccccccccccCceEEEecCCCceeeehhhcchhhhcC-cccccce
Confidence 111000 0 1112233333333 89999999999999995433333444 7778899
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccc
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
..+....+|..+.+.....+.+.|++.
T Consensus 607 k~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 607 KHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeeEeecCCcEEEEeecceEEEEeccc
Confidence 999999999655555567888888864
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.81 Score=38.88 Aligned_cols=152 Identities=5% Similarity=-0.020 Sum_probs=90.2
Q ss_pred EEEEEEec-CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEcccccccccc
Q 038568 145 VSDLVVKQ-GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
-+.+-|.. +..+.+...|.+.-|-++... ....+.....++|.++.|++|++ +++--.+.+|.+++... .
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~------d 98 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP------D 98 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCC------C
Confidence 34455655 444444555667777654322 22233245567999999999996 88888899999998751 1
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEec
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGS 296 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~ 296 (357)
+.......+.+.....|....|..+ .-++.-...| +-+|-...... ..+....|+..|.-..|.++ +|+++-
T Consensus 99 ~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~ 174 (657)
T KOG2377|consen 99 NSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTV 174 (657)
T ss_pred chhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeeccc
Confidence 1122223333444556888888865 5566665555 67776554332 23344457777877777776 444443
Q ss_pred CCCeEEEeeC
Q 038568 297 ADRTVRIWQR 306 (357)
Q Consensus 297 ~dg~i~vw~~ 306 (357)
..+++.=+.+
T Consensus 175 ~~n~lnpf~~ 184 (657)
T KOG2377|consen 175 LENVLNPFHF 184 (657)
T ss_pred cccccccEEE
Confidence 4444443433
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.1 Score=37.88 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=80.0
Q ss_pred ccEEEEEEecCCe-EEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC----CCEEEEEecCC
Q 038568 184 DAVNAVVVSDNGV-VYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD----GSLLFSGGCDR 256 (357)
Q Consensus 184 ~~v~~~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg 256 (357)
.++..++|..... +++.- .+|.+++=|-. .+. .-.-|..+.|.|- ...|++.-...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------viG----qFEhV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------VIG----QFEHVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------Eee----ccceeeeeeecCcccCCCCceEEEeccc
Confidence 4677888875443 33332 34444443322 222 2345889999983 33555566778
Q ss_pred eEEEEecccC--Cceeee--eec-cCCccce--EEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 257 WIVVWERERD--HRMVFA--EAL-WGHTGAL--LCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 257 ~i~vwd~~~~--~~~~~~--~~~-~~~~~~v--~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
.|.||.+... +.-... ++. .+..-++ ..+.|+|+ .|+.=.....-.+++++... .+....+ ...+.|.|
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-srVkaDi-~~~G~IhC 160 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-SRVKADI-KTSGLIHC 160 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-ceEEEec-cCCceEEE
Confidence 8999998621 111111 110 0111222 34567777 44443433333455665432 1223334 34678999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|.+||+ +++++.|..=.-++||
T Consensus 161 ACWT~DG~------RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 161 ACWTKDGQ------RLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEecCcCC------EEEEEeCCeEEEEEec
Confidence 99999998 4444555554567786
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.34 Score=37.62 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=51.0
Q ss_pred ccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc------cc-------cccccEEEEEEecCCeEEEEeCCCeEEEE
Q 038568 143 DAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV------NK-------AHEDAVNAVVVSDNGVVYTGSADGRIRVW 209 (357)
Q Consensus 143 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~l~~~~~d~~i~i~ 209 (357)
.++..+....+++++.+.+|.+++||+.+++.+..- -. .....|..+.++.+|..++.-.+|..+.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 355556666688999999999999999987643321 12 35567888889988864444556888999
Q ss_pred Ecc
Q 038568 210 ERS 212 (357)
Q Consensus 210 d~~ 212 (357)
+..
T Consensus 93 ~~~ 95 (219)
T PF07569_consen 93 SPD 95 (219)
T ss_pred ccc
Confidence 875
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.2 Score=36.91 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=67.0
Q ss_pred CeEEEEecC--CeEEEEEcCcch--hhhhccccccccEEEEEEecCCe-EEEEeCCC---eEEEEEccccccccccccce
Q 038568 153 GLMYSVSWD--RSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGV-VYTGSADG---RIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 153 ~~l~~~~~d--g~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~---~i~i~d~~~~~~~~~~~~~~ 224 (357)
...+.|+.+ ..+..||..+++ .+..+ .....-.+++. -+++ .+.|+.++ .+..||.+. ...
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l--~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~--------~~W 388 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSL--LKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNH--------DQW 388 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCC--CCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCC--------CEE
Confidence 555666643 357778876542 22222 11111112222 2454 56666543 466777651 122
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----C
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----R 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g 299 (357)
.....+....... +++ .-++++.+.| |.+.+||.++++ ......+.............+...+.||.+ .
T Consensus 389 ~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~-W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~ 462 (480)
T PHA02790 389 QFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNT-WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYID 462 (480)
T ss_pred EeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCc-EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccc
Confidence 2222221111111 222 2356666666 357789887653 223333322233344456667777777754 3
Q ss_pred eEEEeeCCCC
Q 038568 300 TVRIWQRGKE 309 (357)
Q Consensus 300 ~i~vw~~~~~ 309 (357)
.+..||..++
T Consensus 463 ~ve~Yd~~~~ 472 (480)
T PHA02790 463 TIEVYNNRTY 472 (480)
T ss_pred eEEEEECCCC
Confidence 5667777664
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.3 Score=34.14 Aligned_cols=256 Identities=11% Similarity=0.087 Sum_probs=134.6
Q ss_pred cccccccccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEE
Q 038568 3 HLHSVSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSIT 79 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~ 79 (357)
+++++.-..|.......+-. -.+--.++..+|++..++..| -..+.|+.+.. +....+.. ....-..++
T Consensus 107 GL~IvDIS~P~sP~~~~~ln-----t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~---~~~d~~~v~ 178 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLN-----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL---PGGDTHDVA 178 (370)
T ss_pred ceEEEeccCCCCcceecccc-----CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc---CCCCceeEE
Confidence 45555544444333333321 335567777789999999977 88888883322 23333443 444557888
Q ss_pred EecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe
Q 038568 80 FHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS 159 (357)
Q Consensus 80 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 159 (357)
.+.+.-..+..|+-+.+-|+........+... .....+.++..++++....-
T Consensus 179 ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~----------------------------n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 179 ISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY----------------------------NTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred EecCeEEEEEeCCCeEEEEccCCCCCeEEEEE----------------------------ecCCceEEEEecCCeeEEEE
Confidence 88888777788899999999877655444332 11236777888885555555
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEE---EEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAV---VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
.+.-+.+-|..+.+....+-.-....+.++ .. ++.+......+.-+.+.|+.... .......+......
T Consensus 231 y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp~-------spfl~ss~~t~g~~ 302 (370)
T COG5276 231 YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNPP-------SPFLSSSLDTAGYQ 302 (370)
T ss_pred cccceEEEecCCCCCceEeeccccCCcccccceec-ccceeeeeccccCceeEeccCCC-------CCchhccccCCCcc
Confidence 555677778776664444311122222222 33 23355555556666677765110 11111111111112
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeC
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
-..+... +.++..+..+ ...+-+....+....... ......-.++....+.+.+...++-+.+|+.
T Consensus 303 a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g-~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 303 AAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPG-RPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccC-cceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 2333332 3455554444 344444443221111000 0001111233444457777777888888875
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=3.7 Score=36.50 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=79.9
Q ss_pred CeEEEEecCC-----eEEEEEcCcchh--hhhccccccccEEEEEEecCCe-EEEEeCC--CeEEEEEcccccccccccc
Q 038568 153 GLMYSVSWDR-----SFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNGV-VYTGSAD--GRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 153 ~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~ 222 (357)
..++.|+.++ .+..||..+.+- +..+ .....-.+++. -++. .+.|+.+ ..+..||.. ..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~--------~n 341 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHG--------DA 341 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC--CchhhcceEEE-ECCEEEEECCcCCCCceEEEECC--------CC
Confidence 4556666543 466788776542 2222 11111122222 3554 5666653 356777754 11
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR 299 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 299 (357)
.......+.........+ .-+|++.+.|+.++ .+..||.++.+ ......+.............+...+.|+
T Consensus 342 ~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~~~~~~IYv~GG--- 415 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCALVFGRRLFLVGR--- 415 (480)
T ss_pred eEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEEEECCEEEEECC---
Confidence 222222222111111112 23577777777553 47788887543 2222222111122233455555666664
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
.+.+||.+++ .+..+..+....... +++. -+++ +.+.||.+
T Consensus 416 ~~e~ydp~~~-~W~~~~~m~~~r~~~-~~~v-~~~~-------IYviGG~~ 456 (480)
T PHA02790 416 NAEFYCESSN-TWTLIDDPIYPRDNP-ELII-VDNK-------LLLIGGFY 456 (480)
T ss_pred ceEEecCCCC-cEeEcCCCCCCcccc-EEEE-ECCE-------EEEECCcC
Confidence 4778998765 355444433222222 2222 3444 77777754
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.8 Score=37.56 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=53.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEeccc----------CCceeeeeec--------cCCccceEEEeecCc-----e
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERER----------DHRMVFAEAL--------WGHTGALLCLINVGD-----L 291 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~--------~~~~~~v~~~~~~~~-----~ 291 (357)
-.|..+.++|+|++|+..+..| |.|-.+.. ++.....+.. ..+...|..+.|+|. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988876 54544421 1110011111 134457788899864 8
Q ss_pred EEEecCCCeEEEeeCCCCcceeeee
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
|+.=.+|+++|+||+........+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 8888999999999998754333333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.4 Score=39.43 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=51.5
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEEEccc-cccc---cccccceeeeeE-------eeccccceeEEEEecC---CC
Q 038568 183 EDAVNAVVVSDNGV-VYTGSADGRIRVWERSV-VDHN---KERKSRHMLVTT-------LVKHRSTVNALALNGD---GS 247 (357)
Q Consensus 183 ~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~---~~ 247 (357)
.-.|..+.++|+|. ++..|. ..|.|..+.. .... ..+.....+... .......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688899999995 555555 4455555431 1100 001111111110 1133457889999995 57
Q ss_pred EEEEEecCCeEEEEecccCCce
Q 038568 248 LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 248 ~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.|++-..|+.+|+||+.....+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 8999999999999999865543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.5 Score=41.03 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=88.3
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe-cC-C-------eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS-DN-G-------VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+-.+.|+.+.+|+.+++.....+ .+....|..+..- |. | ++++.+.--.|.++-+...+...... ....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~-~f~~ 170 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS-IFNT 170 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc-cccc
Confidence 34456889999999997777777 6666666666543 21 1 35555555667777665222211111 0111
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc----cC---C---ce-----------eeeeecc-CCccceEE
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE----RD---H---RM-----------VFAEALW-GHTGALLC 284 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~---~---~~-----------~~~~~~~-~~~~~v~~ 284 (357)
...+......|.++....+|+.+++|- || .+|.+. .+ + .+ ..+..+. .+..+|..
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 122233356788999777888777764 55 455442 10 0 00 0011122 56678888
Q ss_pred EeecCc--eEEEecCCCeEEEeeCCC
Q 038568 285 LINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 285 ~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
++.+.. .+.+-+..|+|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 888765 888999999999999976
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.7 Score=33.54 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=107.9
Q ss_pred CCCceEEEEEecCc---eEEeecCCe-EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCK-IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
-...-..|+|+|.. ++.+-.-|+ ..++|.+..+....+..... +-|.+|.
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~----------------------RHfyGHG---- 119 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG----------------------RHFYGHG---- 119 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC----------------------ceeeccc----
Confidence 34455678888764 666666666 57889888876655543321 2222332
Q ss_pred EEEEec--CeEEEEec-----CCeEEEEEcCcc-hhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEE-Eccccccc
Q 038568 147 DLVVKQ--GLMYSVSW-----DRSFKIWNASNY-KCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVW-ERSVVDHN 217 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~ 217 (357)
.|++ .+|+..-. -|.|-+||.+.+ +.+..+ ..|.-....+.+.+||++++... |-|..- |....+.+
T Consensus 120 --vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lN 195 (366)
T COG3490 120 --VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELN 195 (366)
T ss_pred --ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeC-CceecccccCccccc
Confidence 4666 44444433 377999998753 345556 66777778899999996444332 333333 21110000
Q ss_pred c-ccccceeee----------eEee--ccccceeEEEEecCCCEEEEEecCCe-----EEEEecccCCceeeeeec----
Q 038568 218 K-ERKSRHMLV----------TTLV--KHRSTVNALALNGDGSLLFSGGCDRW-----IVVWERERDHRMVFAEAL---- 275 (357)
Q Consensus 218 ~-~~~~~~~~~----------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~---- 275 (357)
- ..+.....+ .++. .+...+..++..+||..++.+-..|. -.+=-...++.+..+...
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 0 001111111 1111 34456788888888876665533321 111111122222111110
Q ss_pred cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc
Q 038568 276 WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~ 310 (357)
......+-+++.+.+ ..+|+-..+...+||..++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 011223444555432 44555567788899999983
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=46.53 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
.+-+++-+..+......+..+..+.+-.+.|.... ++. -.-|.+.+||+...+.+- ...-.+........++.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i---q~~l~v~~~~p~gs~~~ 184 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI---QPQLEVTPITPYGSDPQ 184 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc---ccceEEeecCcCCCCcc
Confidence 45577777665443334446677788888875433 222 334678899987322111 01111222223344556
Q ss_pred EEEEec---CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce-------------EEEeecCceEEEecCCCeEE
Q 038568 239 ALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL-------------LCLINVGDLLASGSADRTVR 302 (357)
Q Consensus 239 ~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~l~~~~~dg~i~ 302 (357)
-+.|.| +.-++..+-.++.|++...++... ..+.+|...+ -.++.+|..++.++.||.++
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 677766 566888888899999887765432 2233354443 34556667899999999998
Q ss_pred EeeCCC--CcceeeeeeecCCc-CceEEEEEeeCCC-CCCCCe-EEEEEcC-CCCeEEecC
Q 038568 303 IWQRGK--ENCYRCMAFLEGHE-KPVKSLVAISSSS-SASNGI-VSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~--~~~~~~~~~~~~h~-~~v~~~~~~~~~~-~~~~~~-~~l~s~~-~dg~v~~wd 357 (357)
.|.+.- ....+++...+.|. ++-.|.-++.... ..+.+. .++++++ ...-+++|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 887642 22345667777777 3433333433322 112222 1344444 445577774
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.68 Score=35.98 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=48.2
Q ss_pred cceEEEeecCceEEEecCCCeEEEeeCCCCcceeee----eeec-------CCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 280 GALLCLINVGDLLASGSADRTVRIWQRGKENCYRCM----AFLE-------GHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 280 ~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.++..+...+++|++-..+|.+++||+.+.+..-.- ..+. .....|..+....+|. -+++-+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-------PiV~ls 85 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-------PIVTLS 85 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-------EEEEEe
Confidence 355667788889999999999999999986421110 0111 3556788888888876 566554
Q ss_pred CCCeEEecC
Q 038568 349 LNGEIKVWD 357 (357)
Q Consensus 349 ~dg~v~~wd 357 (357)
+|....||
T Consensus 86 -ng~~y~y~ 93 (219)
T PF07569_consen 86 -NGDSYSYS 93 (219)
T ss_pred -CCCEEEec
Confidence 46677765
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.58 E-value=4.5 Score=35.13 Aligned_cols=195 Identities=10% Similarity=0.061 Sum_probs=94.1
Q ss_pred eEEEEEecCc---eEEeecC----CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 75 VKSITFHITK---IFTAHQD----CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 75 v~~l~~~~~~---l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+....++|++ +++.+.. ..+++.|+.+++.....-. ......
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-------------------------------~~~~~~ 174 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-------------------------------NPKFSS 174 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-------------------------------EEESEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-------------------------------ccccce
Confidence 3356788887 3333333 3599999999854332110 011123
Q ss_pred EEEec--CeEEEEec-----------CCeEEEEEcCcchhh--hhcccccccc-EEEEEEecCCe--EEEEeC--C-CeE
Q 038568 148 LVVKQ--GLMYSVSW-----------DRSFKIWNASNYKCL--ESVNKAHEDA-VNAVVVSDNGV--VYTGSA--D-GRI 206 (357)
Q Consensus 148 ~~~~~--~~l~~~~~-----------dg~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~--l~~~~~--d-~~i 206 (357)
+.|.+ ..|+.... ...|..|.+.+...- ..+....... ...+..++++. ++.... + ..+
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 77877 34433332 223788888765433 2231222223 66788899883 333333 2 457
Q ss_pred EEEEccccccccccccceeeeeEeeccccce-eEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCcc--
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTV-NALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTG-- 280 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~-- 280 (357)
.+.|+.. ..........+......+ ..+... .+.+++... .++.|...++...........+..+..
T Consensus 255 ~~~d~~~------~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 255 YLLDLDD------GGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEECCC------TTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred EEEeccc------cCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 7777761 100011222222233333 333333 444444332 246777778876653111213333433
Q ss_pred ceEEEeecCc-eEEEecCCC--eEEEeeCC
Q 038568 281 ALLCLINVGD-LLASGSADR--TVRIWQRG 307 (357)
Q Consensus 281 ~v~~~~~~~~-~l~~~~~dg--~i~vw~~~ 307 (357)
.+..+...++ +++....++ .|+++++.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 5666666666 444444444 67888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.3 Score=36.93 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=74.4
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-------EEEEEecCCeEEEEecccCCce
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-------LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
+..|+....++-.|+. .++.+.....|... -+.|.|..+ .-++|-.+..|.-.|.+-....
T Consensus 483 ~~dg~~~~kLykmDIE----------rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 483 YLDGGERDKLYKMDIE----------RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred EecCCCcccceeeecc----------cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 5556666777777776 56677777766554 467777422 2344555666666666643321
Q ss_pred eeeee---ccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 270 VFAEA---LWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 270 ~~~~~---~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
..... ..+....-...+-...++|+++..|-|++||--.. +....+.+-...|..+....+|.
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred eeeeeehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCc
Confidence 11111 11111111222233449999999999999996543 33344566778899999999987
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.44 E-value=5.3 Score=35.51 Aligned_cols=120 Identities=7% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCceEEEEEecCc------eEEeecCCeEEEEecCCcc--ceeeeeecCccccceeeeecCCCeEEEeccccccccccc
Q 038568 71 SSGSVKSITFHITK------IFTAHQDCKIRVWKITASR--QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW 142 (357)
Q Consensus 71 ~~~~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (357)
.-+.|..+.|.|-. |++......|.||.+.... .-+.+..... .+-+...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc----------------------Ei~e~~p 112 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC----------------------EIREPFP 112 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee----------------------eccCCcc
Confidence 44578999999852 7777778999999986221 1111100000 0000000
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCCeEEEEEcc
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADGRIRVWERS 212 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~i~i~d~~ 212 (357)
---..+.|+| ..|+.-.....-.+++++.....-.......+.|.|.+|.+|| +| ++.+..=.-++||-.
T Consensus 113 vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 113 VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 1113466888 3444433333334455543322222213567889999999999 43 334444556788853
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.8 Score=33.23 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe------cCCeEEEEecccCCceeeeee-c
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG------CDRWIVVWERERDHRMVFAEA-L 275 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-~ 275 (357)
-..|++||.. ..+-...-.+-.+.|+.|.|..+.++++.|. ....+..||+.+..- ..... .
T Consensus 15 C~~lC~yd~~----------~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~ 83 (281)
T PF12768_consen 15 CPGLCLYDTD----------NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGS 83 (281)
T ss_pred CCEEEEEECC----------CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcc
Confidence 3468999976 1222222223567899999986666666664 345688899886542 11111 1
Q ss_pred -cCCccceEEEeec---Cc-eEEEec-CCC--eEEEeeCCCCcceeeeee-ecCCcCceEEEEEeeC-C------CCCCC
Q 038568 276 -WGHTGALLCLINV---GD-LLASGS-ADR--TVRIWQRGKENCYRCMAF-LEGHEKPVKSLVAISS-S------SSASN 339 (357)
Q Consensus 276 -~~~~~~v~~~~~~---~~-~l~~~~-~dg--~i~vw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~-~------~~~~~ 339 (357)
..-.+++..+.+. .. ..++|. .+| .|..||=.+ +..+.. .......|.++.+-|- . .....
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~---W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~ 160 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS---WSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDS 160 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc---eEeccccccCCCCEEEEEEEEeccccccccccccCC
Confidence 1124667777663 33 444443 333 455564433 444444 3333567888877665 1 12233
Q ss_pred CeEEEEEcC
Q 038568 340 GIVSIGSGS 348 (357)
Q Consensus 340 ~~~~l~s~~ 348 (357)
+..++++|.
T Consensus 161 ~~~Llv~G~ 169 (281)
T PF12768_consen 161 DQVLLVTGS 169 (281)
T ss_pred CcEEEEEee
Confidence 445666665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.14 E-value=5.1 Score=34.40 Aligned_cols=188 Identities=8% Similarity=0.073 Sum_probs=79.1
Q ss_pred CeEEEEe-cCCeEEEEEcCcch----hhhhcc------ccccccEEEEEEecCC-eEEEEe--C----CCeEEEEEcccc
Q 038568 153 GLMYSVS-WDRSFKIWNASNYK----CLESVN------KAHEDAVNAVVVSDNG-VVYTGS--A----DGRIRVWERSVV 214 (357)
Q Consensus 153 ~~l~~~~-~dg~i~iwd~~~~~----~~~~~~------~~~~~~v~~~~~~~~~-~l~~~~--~----d~~i~i~d~~~~ 214 (357)
++|+..+ .++.|.|.|+.+.. ..+.+. ...-.....+..-|+| .++++- . -|.+.++|-+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-- 165 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE-- 165 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT--
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc--
Confidence 4555554 78899999987432 222221 0011122233344677 444432 2 2456666654
Q ss_pred ccccccccceeeeeEeecc---ccceeEEEEecCCCEEEEEec--------------------CCeEEEEecccCCceee
Q 038568 215 DHNKERKSRHMLVTTLVKH---RSTVNALALNGDGSLLFSGGC--------------------DRWIVVWERERDHRMVF 271 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~vwd~~~~~~~~~ 271 (357)
........... ...-+.+.|.|..+.+++... ..++.+||+.+.+..+.
T Consensus 166 --------tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 --------TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp --------T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred --------cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 12222222221 223456777887777777532 35799999998875544
Q ss_pred eeeccCCccceEEEee--cCc---eEEEecCCCeEEEeeCCCCcceeeeeeecC-------------------CcCceEE
Q 038568 272 AEALWGHTGALLCLIN--VGD---LLASGSADRTVRIWQRGKENCYRCMAFLEG-------------------HEKPVKS 327 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~--~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------------------h~~~v~~ 327 (357)
+.. .......+.+.| +|+ -++.+.-.+.|..|--.....++....+.- -..-|+.
T Consensus 238 idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 238 IDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred Eec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 432 211223444544 443 333333455555554422222332222211 0245799
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|..|.|.+ .+.+++=.+|.||.||
T Consensus 317 I~iSlDDr------fLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 317 ILISLDDR------FLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEE-TTS-------EEEEEETTTTEEEEEE
T ss_pred EEEccCCC------EEEEEcccCCcEEEEe
Confidence 99999998 3445666899999886
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.014 Score=49.18 Aligned_cols=143 Identities=12% Similarity=0.144 Sum_probs=92.3
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEe
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWE 262 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd 262 (357)
......|.+++ -++.++.+..+..||-. .+..... ...+....++|+.++..++ .+-..+.+.+||
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-----------gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-----------GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-----------cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 33455677777 48889999999999854 1222111 2234456788888776544 455678899999
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
+.+.... .+..-..|.... +.|++. .++.+...|.+.+++..+. +.+.....|...+++++|.+.+
T Consensus 104 ~n~eytq-qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lEd------ 171 (615)
T KOG2247|consen 104 VNSEYTQ-QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLED------ 171 (615)
T ss_pred hhhhhHH-HHhccCcchHHH--HhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEecccc------
Confidence 9865421 111111223333 445543 7788888999999998875 4444444599999999999987
Q ss_pred eEEEEEcCCCCeE
Q 038568 341 IVSIGSGSLNGEI 353 (357)
Q Consensus 341 ~~~l~s~~~dg~v 353 (357)
+.+.++.|..+
T Consensus 172 --~vil~dcd~~L 182 (615)
T KOG2247|consen 172 --YVILCDCDNTL 182 (615)
T ss_pred --eeeecCcHHHH
Confidence 56667666543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.79 E-value=5.2 Score=33.56 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=56.2
Q ss_pred cEEEEEEec-CeEEEEecCCeEEEEEcCcchh---hh---hccccccccEEEEEEecC----CeEEEEeC-------CC-
Q 038568 144 AVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKC---LE---SVNKAHEDAVNAVVVSDN----GVVYTGSA-------DG- 204 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---~~---~~~~~~~~~v~~~~~~~~----~~l~~~~~-------d~- 204 (357)
.-++|+|.| ..++.+...|.|++++. .+.. +. .+..........++++|+ ++|.+... ..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 356889999 67777788999999993 3322 11 121345567899999995 54433333 12
Q ss_pred -eEEEEEccccccccccccceeeeeEeec---cccceeEEEEecCCCEEEEEecC
Q 038568 205 -RIRVWERSVVDHNKERKSRHMLVTTLVK---HRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 205 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
.|.-|..... ..........+..... ....-..|.|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~--~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDG--DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETT--SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCC--ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 3333333311 0011111222222222 23445679999999766655543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.4 Score=34.51 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=17.1
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEE
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd 168 (357)
.|..+..++ ..++..+.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 566677777 6777777788665543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.4 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|.+++|+|.|- ...+.-+|++...+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl-~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGL-GPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCC-CCCCceEEEEEcCCCeEEEEe
Confidence 3799999999874 233445899999999999983
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.52 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=24.3
Q ss_pred ccEEEEEEec-----CeEEEEecCCeEEEEEcCc
Q 038568 143 DAVSDLVVKQ-----GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 143 ~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~ 171 (357)
+.|.++.|+| ++|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999997 5788888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.10 E-value=7.2 Score=33.64 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=51.4
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE----ee-------------cCc--
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL----IN-------------VGD-- 290 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~----~~-------------~~~-- 290 (357)
+......+.++..+|++++.++...=|+|.++|+.++.. ++..+|...+-..+ .. .++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---hhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 334445688999999999999988889999999987753 23333332221111 00 011
Q ss_pred --eEEEecCCCeEEEeeCCCCc
Q 038568 291 --LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~ 310 (357)
+++-+-.-|.|.||.++++.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCC
Confidence 44556678999999999873
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.08 E-value=6.7 Score=33.47 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=13.5
Q ss_pred ceeEEEEecCCCEEEEEe
Q 038568 236 TVNALALNGDGSLLFSGG 253 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~ 253 (357)
....++|+|+|+++++-.
T Consensus 185 np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccceECCCCCEEEEcc
Confidence 356899999998776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.00 E-value=4.7 Score=36.97 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=51.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~ 101 (357)
....++++.-. |+-++.+..| .|++|++ .+.+.-+... ...+-..+.|...+|+++..|..+.-|.-+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~-~~r~qski~~----~~~p~~nlv~tnhgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNF-IPRRQSKICE----EAKPKENLVFTNHGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEee-cccchhhhhh----hcCCccceeeeccceEEEeccchhheeeccC
Confidence 44567777766 8889999999 9999999 5544433333 3345567888888899999999998887543
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=91.92 E-value=8 Score=33.76 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=25.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
..|.++...+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.26 E-value=6.4 Score=31.37 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=103.5
Q ss_pred cceecccccCCCCCCCc--cceeEEEE-e-cceEEEee-CC--ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 13 KHHCIASLKIPSPDPHH--MIISCLAV-H-NSLLYAAS-LN--EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~--~~i~~~~~-s-~~~l~t~~-~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
..+.++++. |+ .-...+.| . |.++-+.+ .+ .|+.+|+ ++++..+...- +..--=-.++...+.
T Consensus 32 ~~~vv~~yp------Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~-~tg~~~~~~~l--~~~~FgEGit~~~d~l 102 (264)
T PF05096_consen 32 SYEVVETYP------HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL-ETGKVLQSVPL--PPRYFGEGITILGDKL 102 (264)
T ss_dssp EEEEEEEEE--------TT-EEEEEEEEETTEEEEEECSTTEEEEEEEET-TTSSEEEEEE---TTT--EEEEEEETTEE
T ss_pred eeEEEEECC------CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEEC-CCCcEEEEEEC--CccccceeEEEECCEE
Confidence 345555555 53 44667888 4 55555555 33 9999999 88877665543 122222356666676
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
..-.=.++...+||..+-+....+.- ...=+.++...+.|+.......|
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-------------------------------~~EGWGLt~dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPY-------------------------------PGEGWGLTSDGKRLIMSDGSSRL 151 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE--------------------------------SSS--EEEECSSCEEEE-SSSEE
T ss_pred EEEEecCCeEEEEccccceEEEEEec-------------------------------CCcceEEEcCCCEEEEECCccce
Confidence 44445678999999987665544421 23445666656666666667789
Q ss_pred EEEEcCcchhhhhcccc----ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeE------eecc
Q 038568 165 KIWNASNYKCLESVNKA----HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTT------LVKH 233 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~ 233 (357)
.++|..+.+....+.-. .-..++.+.+. +|. .+=.-....|...|..++.....-... ..... ....
T Consensus 152 ~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls-~L~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLS-GLRPEVGRDKSRQPD 229 (264)
T ss_dssp EEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-H-HHHHHHTSTTST--T
T ss_pred EEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh-Hhhhccccccccccc
Confidence 99999887766655211 12245566665 443 333344555666666522111000000 00000 0011
Q ss_pred ccceeEEEEecCCCEEEEEe
Q 038568 234 RSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~ 253 (357)
..-.+.|+++|..+.|+..+
T Consensus 230 ~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEe
Confidence 34578999999766555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.16 E-value=11 Score=33.63 Aligned_cols=270 Identities=11% Similarity=0.093 Sum_probs=134.5
Q ss_pred CccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 28 HHMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
-..+|.++.++ ...+..|+.|-+..||. .+++.++.-.. +...+|..+.-.-.+ |..|+.+| +.+.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~-~~gkalql~s~--~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDA-GRGKALQLASP--PLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEcc-ccceEEEcCCC--cchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcccc
Confidence 45678889999 77888888887888888 66666554443 133566666666544 88888766 566665542211
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccc--cc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNK--AH 182 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~ 182 (357)
..... -....|..+.-.. ..+-.|+..|..+. ............. ..
T Consensus 239 n~~~~-----------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~ 288 (671)
T COG3292 239 NWGPM-----------------------------LPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQGLQIPLSKMHLG 288 (671)
T ss_pred ccCCC-----------------------------CcchheeeeecccCCCEEEeecccceeE-ecCCCCccccccccCCc
Confidence 11111 1223444444444 66777777664433 2222222111111 12
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc-ceeEEEEec--CCCEEEEEecCCeEE
Q 038568 183 EDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-TVNALALNG--DGSLLFSGGCDRWIV 259 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~ 259 (357)
-+.|.++....+|.+-++..++.+++-+-. ......+....+ .+-..+..| .+..+.-...-|.+.
T Consensus 289 ~S~vnsL~~D~dGsLWv~t~~giv~~~~a~-----------w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~ 357 (671)
T COG3292 289 VSTVNSLWLDTDGSLWVGTYGGIVRYLTAD-----------WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELM 357 (671)
T ss_pred cccccceeeccCCCEeeeccCceEEEecch-----------hhheeeeecCCCchhhhhccCchhcccceeeccccceEE
Confidence 345677777778889999888887765432 111111111111 111111122 112222222223333
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeec-CCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLE-GHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 337 (357)
+-+-.++..........+ ..|+...++.+ .+-.|+...-+..|+..+. +..+.... ...++|..+.=.|+++
T Consensus 358 van~stG~~v~sv~q~Rg--~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dns-- 431 (671)
T COG3292 358 VANGSTGELVRSVHQLRG--MNITTTLEDSRGRLWLGSMQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNS-- 431 (671)
T ss_pred EecCCCCcEEEEeeeccc--cccchhhhccCCcEEEEecccchhhhccCCc--ccccccccCCcccceeeeeecCCCC--
Confidence 444444443333333322 22322223223 4555555534556665551 12222222 2356788887778775
Q ss_pred CCCeEEEEEcCCCCeEE
Q 038568 338 SNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~ 354 (357)
|.-|+.+|.++
T Consensus 432 ------LWIGTs~Glvk 442 (671)
T COG3292 432 ------LWIGTSGGLVK 442 (671)
T ss_pred ------EEEeccCCeEe
Confidence 55666777665
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.00 E-value=11 Score=33.54 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=84.3
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...+|..+.+...+ +..|+.|| +..||..+++..+.... ....+|..+.
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~-----------------------------~~dk~I~al~ 212 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASP-----------------------------PLDKAINALI 212 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCC-----------------------------cchhhHHHHH
Confidence 34567777777666 77777766 55667666554332211 1113444444
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
-+- ..+..|+.+| +.+.+.+..+.......-....|..+.-..+|.+-.|+..|..+.--.+ ..-..+..
T Consensus 213 ~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r--------q~Lq~~~~ 283 (671)
T COG3292 213 ADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR--------QGLQIPLS 283 (671)
T ss_pred HHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCC--------CCcccccc
Confidence 444 6788888776 7777766533332221233455666666667778888888766543222 00111111
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
......+.|.++..+.+|. |.+++.++.+++-+
T Consensus 284 ~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 284 KMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred ccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 1222235567777777775 66777777655543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.63 E-value=9.7 Score=32.31 Aligned_cols=189 Identities=11% Similarity=-0.008 Sum_probs=85.0
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc----------------cccEEEEEEecCC-eEEEE-e
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH----------------EDAVNAVVVSDNG-VVYTG-S 201 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~-~l~~~-~ 201 (357)
...+....|+| +.++-. .++.|.+++..+++..+.-..+. -..-..+-|+||+ +|+.. .
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35677888888 444444 46789999876653322111110 1123568899999 34433 3
Q ss_pred CCCeEEEEEccccccccc-------------cccc--------------eeeeeEe---eccccceeEEEEecCCCEEEE
Q 038568 202 ADGRIRVWERSVVDHNKE-------------RKSR--------------HMLVTTL---VKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~-------------~~~~--------------~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.+..|..+.+........ +... ...+... ......+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 444455444332211100 0000 0000000 122345678889898884443
Q ss_pred EecC-----CeEEEEecccCCceeeeeeccCCccce---EEEee---cCc-eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 252 GGCD-----RWIVVWERERDHRMVFAEALWGHTGAL---LCLIN---VGD-LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 252 ~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v---~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
.-.+ -.+.+.|..++......... ....+ ....+ .++ +|.....||.-+|+-+.... .....+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLT 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccc
Confidence 3322 23666777665443222221 12222 12222 222 55555577765555443321 1133444
Q ss_pred CCcCceEE-EEEeeCCC
Q 038568 320 GHEKPVKS-LVAISSSS 335 (357)
Q Consensus 320 ~h~~~v~~-~~~~~~~~ 335 (357)
...-.|+. +.|+++++
T Consensus 277 ~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNN 293 (353)
T ss_dssp -SSS-EEEEEEEECTSS
T ss_pred cCceeecccceEcCCCC
Confidence 44555655 56666655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=11 Score=32.48 Aligned_cols=110 Identities=6% Similarity=0.027 Sum_probs=64.1
Q ss_pred cccEEEEEEec-CeEEEEecCCeEEEEEcCcch-----hhhhcccc-ccccEEEEEEecCCeEEEEeCCCeEEEEEcccc
Q 038568 142 WDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK-----CLESVNKA-HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 142 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 214 (357)
...+..+.+.+ ..++.++.+|.+.. ....++ ........ ....+.++.+.+++.++.++..|.+....-.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~-- 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDG-- 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCC--
Confidence 45678888887 55666667776544 333333 12222111 2245888999988888888888887765421
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
....+.......-....+.+.|.++++.+++ +.+|.|.-|
T Consensus 357 ------G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 ------GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ------CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 1122222211223456788998777665555 567776554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.25 E-value=3.6 Score=30.61 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=24.6
Q ss_pred ccEEEEEEec--------CeEEEEecCCeEEEEEcCc
Q 038568 143 DAVSDLVVKQ--------GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 143 ~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~ 171 (357)
..+.+++|+| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999999 4788899999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=6.4 Score=31.58 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=62.9
Q ss_pred eEEEEecC-CCEEEEEecCCe-EEEEecccCCceeeeeeccC-CccceEEEeecCceEEEecCC-----CeEEEeeCCCC
Q 038568 238 NALALNGD-GSLLFSGGCDRW-IVVWERERDHRMVFAEALWG-HTGALLCLINVGDLLASGSAD-----RTVRIWQRGKE 309 (357)
Q Consensus 238 ~~~~~~~~-~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 309 (357)
..++|+|. .+-++.+-.-|+ ..++|....+.+.......+ |-..--+++.++.+|++.-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35677773 345555555554 57888887766544432221 211123345555566655443 78999999965
Q ss_pred cceeeeeeecCCcCceEEEEEeeCCC
Q 038568 310 NCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 310 ~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++.+.++..|.-.-..+.|.+|++
T Consensus 151 --fqrvgE~~t~GiGpHev~lm~DGr 174 (366)
T COG3490 151 --FQRVGEFSTHGIGPHEVTLMADGR 174 (366)
T ss_pred --cceecccccCCcCcceeEEecCCc
Confidence 677888999988888999999998
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=11 Score=32.10 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccc-cccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAH-EDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
..++.+..+|.|.-.|..+++.+....... ...+..-....+|.++.++.++.+..+|.+ .....-...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~----------~G~~~W~~~ 138 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDAS----------TGTLVWSRN 138 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECC----------CCcEEEEEe
Confidence 677777889999999999888665441111 123333333348899999999988888875 222333322
Q ss_pred ccc-cceeEEEEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 232 KHR-STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 232 ~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
... -.+..-..-.++ .+..++.++.+...|..+++...
T Consensus 139 ~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 139 VGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred cCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEE
Confidence 222 011111122233 34444467888888877776543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.56 E-value=19 Score=34.12 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=42.4
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccc-------cEEEEEEec-----------------CCeEEEEeCCCeEEE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHED-------AVNAVVVSD-----------------NGVVYTGSADGRIRV 208 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~-----------------~~~l~~~~~d~~i~i 208 (357)
+.++.++.++.|.-.|.++|+.+.++...... ....+.+.. +++++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 78888888999999999999988776321110 012222221 236888889999999
Q ss_pred EEcccc
Q 038568 209 WERSVV 214 (357)
Q Consensus 209 ~d~~~~ 214 (357)
.|.+++
T Consensus 275 LDA~TG 280 (764)
T TIGR03074 275 LDADTG 280 (764)
T ss_pred EECCCC
Confidence 998743
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.34 E-value=5.8 Score=27.80 Aligned_cols=63 Identities=5% Similarity=0.178 Sum_probs=40.3
Q ss_pred EEe--cceEEEeeCC-ceEEEeccCC--------ccccceeccccCCCCceEEEEEec---C--c--eEEeecCCeEEEE
Q 038568 36 AVH--NSLLYAASLN-EINVFDLISD--------YSHVDTFSNDLSSSGSVKSITFHI---T--K--IFTAHQDCKIRVW 97 (357)
Q Consensus 36 ~~s--~~~l~t~~~d-~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~l~~~~---~--~--l~~~~~d~~i~vw 97 (357)
.|. ..-|+.++.. +|.|.+. .. ...+..+. -...|++|+--+ + . |+.|+ ...+..|
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~p-h~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNP-HERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECC-CccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 455 4456777766 9999987 42 22344444 567888886543 2 2 55555 4689999
Q ss_pred ecCCccc
Q 038568 98 KITASRQ 104 (357)
Q Consensus 98 d~~~~~~ 104 (357)
|+.....
T Consensus 79 DV~~N~d 85 (136)
T PF14781_consen 79 DVENNSD 85 (136)
T ss_pred EcccCch
Confidence 9987653
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.70 E-value=14 Score=31.43 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=103.1
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe----cCC-e--EEEEeC-C---CeEEEEEccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS----DNG-V--VYTGSA-D---GRIRVWERSVVDHNKERK 221 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~-~--l~~~~~-d---~~i~i~d~~~~~~~~~~~ 221 (357)
.+++....++-+.+||+. |+.++.+. ...++.+..- -++ . |++++. + ..|++|.+... .
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~------~ 138 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD------T 138 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT------T
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC------C
Confidence 678888888999999985 66666652 2233333332 133 2 555443 2 57999988621 0
Q ss_pred cceeeee----EeeccccceeEEEEe--c-CCC-EEEEEecCCeEEEEecccCCc----eeeeeeccCCccceEEEeecC
Q 038568 222 SRHMLVT----TLVKHRSTVNALALN--G-DGS-LLFSGGCDRWIVVWERERDHR----MVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 222 ~~~~~~~----~~~~~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~ 289 (357)
.....+. .+......++.+++- + +|. +.++...+|.+..|.+..... ...++.+.. ...+-.+..+.
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDD 217 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDD 217 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEec
Confidence 0111110 011122346677763 3 344 667788899999998863221 123344432 33566666665
Q ss_pred c--eEEEecCCCeEEEeeCCCCc--ceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKEN--CYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. .|+.+-++--|+-|+.+... ..+.+....+ ....|-.|+.-.... ..+++|+|.-.+++..+||
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~---g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD---GKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC---C-EEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC---CCeEEEEEcCCCCeEEEEe
Confidence 5 89999999888888876432 2233433332 446788898876542 2345667766778888875
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.28 E-value=14 Score=31.06 Aligned_cols=53 Identities=4% Similarity=-0.096 Sum_probs=28.3
Q ss_pred CeEEEEecccCCceeeeee---ccCCccceEEEeecCceEEEecCC--------------CeEEEeeCCCC
Q 038568 256 RWIVVWERERDHRMVFAEA---LWGHTGALLCLINVGDLLASGSAD--------------RTVRIWQRGKE 309 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~ 309 (357)
..+.+||+.+.+=. .+.. .........++...+.+++.|+.. +.+..+|+.+.
T Consensus 217 ~~v~~yd~~~~~W~-~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 217 NAVQFFDPASGKWT-EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CceEEEEcCCCcEE-eccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 45888998765421 2211 111122233445555677777742 25778888765
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=17 Score=31.45 Aligned_cols=150 Identities=10% Similarity=0.001 Sum_probs=81.5
Q ss_pred EEEEEEecCCeEEEEeCCCeEE-EEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNGVVYTGSADGRIR-VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
...+...+++.++..+..|.+. -||-- ....+.. -......++.+.+.+++..++++ .+|.+.. ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--------~~~W~~~--~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d 308 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--------QPYWQPH--NRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKG 308 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--------CcceEEe--cCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecC
Confidence 3445556777555555555443 34321 0001111 12234568899999998877665 5665443 333
Q ss_pred cCCcee--eeeecc--CCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCC
Q 038568 265 RDHRMV--FAEALW--GHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASN 339 (357)
Q Consensus 265 ~~~~~~--~~~~~~--~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 339 (357)
.+.... .+.... .....+..+.+.++ .++.++..|.+... ...++.++.......-......+.|.++++
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---- 383 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKK---- 383 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCc----
Confidence 332110 111111 12234777777665 77777788866665 355555554433333456788999988775
Q ss_pred CeEEEEEcCCCCeEEec
Q 038568 340 GIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 340 ~~~~l~s~~~dg~v~~w 356 (357)
.++ .+.+|.|.-|
T Consensus 384 ---g~~-~G~~G~il~~ 396 (398)
T PLN00033 384 ---GFV-LGNDGVLLRY 396 (398)
T ss_pred ---eEE-EeCCcEEEEe
Confidence 444 4568887655
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.86 E-value=11 Score=32.54 Aligned_cols=37 Identities=3% Similarity=-0.141 Sum_probs=29.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
...+.+++.+| .+.++...=|.|.++|+.++..++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 34578899999 56666666699999999999988887
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.67 E-value=28 Score=33.67 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=61.3
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeee-
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFL- 318 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~- 318 (357)
.+..|-..++++| ....+++||+-..+.+.. ..+..-...|..+.+....++.|..--.+.++..+... ..+..+
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk-~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRK-CELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQLIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhh-hhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC--CeEEEEe
Confidence 4566755566555 566899999976553321 12222456788888888888888876667666555432 122222
Q ss_pred -cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE
Q 038568 319 -EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353 (357)
Q Consensus 319 -~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v 353 (357)
..-...|+++.+-..+ -++.+..=|.+
T Consensus 1015 dD~~pR~Vt~~~~lD~~--------tvagaDrfGNi 1042 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDYD--------TVAGADRFGNI 1042 (1205)
T ss_pred CCCccceeeEEEEecCC--------ceeeccccCcE
Confidence 2234557777776665 36655554544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.51 E-value=12 Score=29.21 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=61.3
Q ss_pred EEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeec----cccceeEEEEecCCCEEEEEecCCeEE
Q 038568 186 VNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK----HRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 186 v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
-+.++|+.+.+ .++-+.+-+|.-||.......-. ....+..++. .....-.++...+|++.++.-..++|.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 35678876663 55666777887788431111101 1111222221 111223456677888888888899999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
..|..+++.+..+.. ....+++++|-+.
T Consensus 237 ~~dp~tGK~L~eikl---Pt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKL---PTPQITSCCFGGK 264 (310)
T ss_pred EECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence 999999996655443 4677899999876
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.17 E-value=12 Score=28.81 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=83.6
Q ss_pred EEEEec-CeEEEEecCCeEEEEEcCc--chhhhhccccccccEEEEEEecCC-eEEEEeCC---C---eEEEE-Eccccc
Q 038568 147 DLVVKQ-GLMYSVSWDRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD---G---RIRVW-ERSVVD 215 (357)
Q Consensus 147 ~~~~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~---~i~i~-d~~~~~ 215 (357)
.++-.+ +.|+.+...+.|.+|++.+ .+.+.++ ..-+.|..+.++..| ++++--.+ . .+|+| +.+...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 334444 6666667778899999883 3344555 455889999999888 67765332 2 55664 233111
Q ss_pred ccccc---------------ccce--eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc-e---eee--
Q 038568 216 HNKER---------------KSRH--MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR-M---VFA-- 272 (357)
Q Consensus 216 ~~~~~---------------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~---~~~-- 272 (357)
..... .... -.+.++ .-..++.+++..|-..-|+.|+ ++.+.+|.+..... . ..+
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEec
Confidence 00000 0000 111112 2345678888888433455554 45699998864432 0 000
Q ss_pred -eec-cCCc-cceEEEeecCceEEEecCCCeEEEeeC
Q 038568 273 -EAL-WGHT-GALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 273 -~~~-~~~~-~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
..+ .-|. .....+++.++++|..+.. .++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 011 1111 2246677778888887754 4666544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.47 E-value=9.1 Score=26.85 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=58.3
Q ss_pred CeEEEEecCCeEEEEEcCcch--------hhhhccccccccEEEEEEec---CC-e-EEEEeCCCeEEEEEccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYK--------CLESVNKAHEDAVNAVVVSD---NG-V-VYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~---~~-~-l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
..|+.++.-|.|.|++..... .+..+ .....|++++--+ +. + ++.-+....+..||+..
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~------ 82 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN------ 82 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc------
Confidence 567788888999999876432 22232 4566777776543 22 2 44444556899999871
Q ss_pred cccceeeeeEeeccccceeEEEEec---CCCEEEEEecCCeEEEEecccCC
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.... .++.-...|+++.+-. ...-|+..+.+-.|.-||....+
T Consensus 83 ---N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 ---NSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ---Cchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 1111 1222345677776643 12234444445667777766443
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.40 E-value=4.9 Score=36.50 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred cCCCEEEEEecCCeEEEEeccc----CCceeee-----------eecc--------CCccceE--EEee----cCceEEE
Q 038568 244 GDGSLLFSGGCDRWIVVWERER----DHRMVFA-----------EALW--------GHTGALL--CLIN----VGDLLAS 294 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~-----------~~~~--------~~~~~v~--~~~~----~~~~l~~ 294 (357)
++...++.+..||.+....... +...... ..+. ....... .+.. ..+++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666888888999988887764 1111110 0000 0012222 2323 2339999
Q ss_pred ecCCCeEEEeeCCCCcc
Q 038568 295 GSADRTVRIWQRGKENC 311 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~ 311 (357)
-+.|+.+|+||+.+++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999854
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.5 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.6
Q ss_pred ceEEEeecCceEEEecCCCeEEEee
Q 038568 281 ALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 281 ~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
.|.+++..+.+++++.+-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 4778888888999999999999984
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.98 E-value=8.5 Score=35.82 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=81.2
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
+..++.++.+.++.-..+........... .....+.++.+++..+..|.-||++
T Consensus 550 ic~gtq~ssisissss~~s~ke~~~~~~s--------------------------pe~~~v~~l~~ss~Slgagl~dgt~ 603 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKEVTSEPPS--------------------------PEHESVKLLLFSSGSLGAGLIDGTL 603 (925)
T ss_pred ccccCccceeEEeeccCCcccceeccCCC--------------------------CchhhhhhhhccccccccCccCCcc
Confidence 67778888888887653332222222211 3345677777777667777777776
Q ss_pred EEEEcCc-----chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 165 KIWNASN-----YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 165 ~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
-.+--.. +++-..+ .....++...++..| ++.++.+|.|.++...+ ...... ......|...|++
T Consensus 604 a~y~rap~gSwd~ep~~~~-~~g~lPvrsla~~ed--~~was~gG~V~vi~~tt------~~~~~~-leahqee~~~Vth 673 (925)
T KOG3522|consen 604 AVYGRAPSGSWDGEPNISI-PTGSLPVRSLAFQED--FVWASEGGCVHVIPSTT------FIRSWD-LEAHQEEAHSVTH 673 (925)
T ss_pred ccccCCCCCCCCCCCcccc-ccCCccccchhhhhc--eeeeecCCceEEEechh------ccccch-hHHHHhhcceEEE
Confidence 6543211 0111111 223445666666544 66778899999998762 111111 1222345678999
Q ss_pred EEEecCCCEEEEEecCCeEEEEeccc
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+.+...+-+++..+.| .++.++..+
T Consensus 674 m~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 674 MLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred EEeeCCceEEEEcCCC-EEEEecccc
Confidence 9988776665555444 455555543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.72 E-value=12 Score=33.99 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=41.1
Q ss_pred CeEEEEeCCCeEEEEEccccccccccc-----cce---eeeeE--------eeccccceeEEEEec----CCCEEEEEec
Q 038568 195 GVVYTGSADGRIRVWERSVVDHNKERK-----SRH---MLVTT--------LVKHRSTVNALALNG----DGSLLFSGGC 254 (357)
Q Consensus 195 ~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~---~~~~~--------~~~~~~~v~~~~~~~----~~~~l~~~~~ 254 (357)
..++.+..||.+..............- ... ..+.. .......+..+++++ +..+|++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 368888899999888876311000000 000 00000 001123345556655 6679999999
Q ss_pred CCeEEEEecccCCcee
Q 038568 255 DRWIVVWERERDHRMV 270 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~ 270 (357)
|+.+|+||+.++..+.
T Consensus 239 D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLA 254 (547)
T ss_dssp TSEEEEEETTTTCEEE
T ss_pred CCeEEEEECCCCeEEE
Confidence 9999999999988643
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.72 E-value=21 Score=30.20 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=8.4
Q ss_pred CeEEEEEcCcch
Q 038568 162 RSFKIWNASNYK 173 (357)
Q Consensus 162 g~i~iwd~~~~~ 173 (357)
..+..||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887643
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=85.61 E-value=20 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=15.7
Q ss_pred cCCCEEEEEecCC----eEEEEecccCC
Q 038568 244 GDGSLLFSGGCDR----WIVVWERERDH 267 (357)
Q Consensus 244 ~~~~~l~~~~~dg----~i~vwd~~~~~ 267 (357)
.++++.+.|+.++ .+.+||+++.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3567777777654 35688887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.60 E-value=14 Score=28.34 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=19.1
Q ss_pred cccEEEEEEec-CCeEEEEeCCCeEEEEEcc
Q 038568 183 EDAVNAVVVSD-NGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 183 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~ 212 (357)
..++.+++.-| .|.|++|+. +.+.+|.+.
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~ 163 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCG-NKLVLFTLK 163 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence 34556666665 346776654 688899886
|
|
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.57 E-value=3 Score=38.56 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=86.3
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcch---hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..-++ ..+..|+.++.+.++.-..+. ............+.++.+++. .+..|.-||++-.|--.... ...
T Consensus 542 ~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~g-----Swd 615 (925)
T KOG3522|consen 542 TQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPSG-----SWD 615 (925)
T ss_pred cccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-ccccCccCCccccccCCCCC-----CCC
Confidence 33344 677888899999998765222 222222334455666666543 34555556666554322100 001
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTV 301 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i 301 (357)
.++...+.....+|.+.++..| ++-++.+|.|.++...+............|...|+++.+.+. +++-.+.| .+
T Consensus 616 ~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~ 691 (925)
T KOG3522|consen 616 GEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EE 691 (925)
T ss_pred CCCccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EE
Confidence 1122333344567888888765 566778999999998876544344444556778899988887 33333323 45
Q ss_pred EEeeCCC
Q 038568 302 RIWQRGK 308 (357)
Q Consensus 302 ~vw~~~~ 308 (357)
++++.++
T Consensus 692 rlfhtet 698 (925)
T KOG3522|consen 692 RLFHTET 698 (925)
T ss_pred EEecccc
Confidence 5555443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.55 E-value=39 Score=32.37 Aligned_cols=200 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred cccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccc-cccccEEEEEEe-------cCCeEEEEeCCCeEEEEE
Q 038568 140 EHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNK-AHEDAVNAVVVS-------DNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~-------~~~~l~~~~~d~~i~i~d 210 (357)
|..+.+..++.-. .....+..++....-+.-.......+ . ....+|..|+|. +...++..-....+.|+.
T Consensus 35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~ 113 (765)
T PF10214_consen 35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAW-SIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILR 113 (765)
T ss_pred CCCCCeeEEEEecccccccccccccccccCCCCcccccee-EcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEE
Q ss_pred ------ccccccccccccceeeeeEeecccc--ceeEEEEec-CCCEEEEEecCCeEEEEec--ccCCceeeeeeccCCc
Q 038568 211 ------RSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNG-DGSLLFSGGCDRWIVVWER--ERDHRMVFAEALWGHT 279 (357)
Q Consensus 211 ------~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~ 279 (357)
+.........-........-....+ +...++|+| +.+.||+....|.-.||++ ..............+.
T Consensus 114 p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~ 193 (765)
T PF10214_consen 114 PEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS 193 (765)
T ss_pred cccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC
Q ss_pred cce------E----EEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 280 GAL------L----CLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 280 ~~v------~----~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
+.+ . .+.|.++ .|+.++... +.++|+++...... -........|.++.-+|... ...+++|
T Consensus 194 gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~----~~~FiLT 266 (765)
T PF10214_consen 194 GSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNP----SHVFILT 266 (765)
T ss_pred ccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCccch-hccCCChhheeeEEecCCcc----ceEEEEe
|
These proteins are found in fungi. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=28 Score=29.90 Aligned_cols=40 Identities=8% Similarity=-0.101 Sum_probs=19.9
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD 298 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 298 (357)
+.+||.++.+ ......+..-.....++...+.+++.|+..
T Consensus 314 ~e~yd~~~~~-W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGK-WQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCc-ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578877643 212222221112234556666777777754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.43 E-value=23 Score=28.96 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=113.0
Q ss_pred eeEEEEe-cceEEEeeCC--ceEEEeccC------Cc-cccceecccc--CCCCceEEEEEecC--------------ce
Q 038568 32 ISCLAVH-NSLLYAASLN--EINVFDLIS------DY-SHVDTFSNDL--SSSGSVKSITFHIT--------------KI 85 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d--~i~iw~~~~------~~-~~~~~~~~~~--~~~~~v~~l~~~~~--------------~l 85 (357)
-+.|+|+ +..+.++... ...+||. . .. ..+-++.... ......+.+.|+.. .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg-~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVG-NPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecC-CcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4678888 6667766655 9999998 4 11 1122222101 12346778888732 16
Q ss_pred EEeecCCeEEEEecCCccce--eeeeecCccccceeeeecCCCeEEEeccccccccccccc-EEEEEEec----CeEEEE
Q 038568 86 FTAHQDCKIRVWKITASRQH--QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA-VSDLVVKQ----GLMYSV 158 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~l~~~ 158 (357)
+.+++||+|.-|...-.... ........ ..... -..+++.. ++|+.+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~--------------------------s~~gavYkGLAi~~~~~~~~LYaa 157 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA--------------------------SQQGNVYKGLAVGPTGGGDYLYAA 157 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEcc--------------------------CCCcceeeeeEEeecCCCceEEEe
Confidence 88899999999986433220 00110000 11112 22344332 344433
Q ss_pred -ecCCeEEEEEcCcchhh--hhccc----ccccc--E------EEEEE---ecCC-eEEEEeCCCeEEEEEccccccccc
Q 038568 159 -SWDRSFKIWNASNYKCL--ESVNK----AHEDA--V------NAVVV---SDNG-VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 159 -~~dg~i~iwd~~~~~~~--~~~~~----~~~~~--v------~~~~~---~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
-..++|.++|-.-.+.. ..+.. ..-.+ | .-+.+ .++. .=+.|..-|.|-+||..
T Consensus 158 dF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~------- 230 (336)
T TIGR03118 158 NFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN------- 230 (336)
T ss_pred ccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-------
Confidence 45788999985422211 01100 00000 1 01111 1122 12344445788899875
Q ss_pred cccceeeeeEee--ccccceeEEEEec------CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeec
Q 038568 220 RKSRHMLVTTLV--KHRSTVNALALNG------DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINV 288 (357)
Q Consensus 220 ~~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~ 288 (357)
...++++. +.-...+.|+..| .+.+|+---.||+|..||..+++.+-.+....++.-. .+.+.|.
T Consensus 231 ----G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 231 ----GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred ----CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 44555543 2234456777755 4667776667999999999988755444443333322 2555554
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=83.43 E-value=25 Score=29.34 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=27.2
Q ss_pred CeEEEEec-----CCeEEEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCe----EEEEEcc
Q 038568 153 GLMYSVSW-----DRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGR----IRVWERS 212 (357)
Q Consensus 153 ~~l~~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~----i~i~d~~ 212 (357)
.+.+.|+. ...+..||+.+.+ .+..+ . ........+..-++ ..+.|+.++. +..||++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF-P-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCC-C-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 55555553 2457888887643 22222 1 11111122222344 4666665532 4577765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=83.34 E-value=33 Score=30.58 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCCEEEEEecC----CeEEEEecccCCceeeeeec---cCCccceEEEeecCceEEEecCC--------------CeEEE
Q 038568 245 DGSLLFSGGCD----RWIVVWERERDHRMVFAEAL---WGHTGALLCLINVGDLLASGSAD--------------RTVRI 303 (357)
Q Consensus 245 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~v 303 (357)
++++++.++.+ ..+.+||+.+.+- ...... ........++...+.+++.|+.+ +.+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 56677777655 4589999886542 122111 11112223445556677777753 24788
Q ss_pred eeCCCC
Q 038568 304 WQRGKE 309 (357)
Q Consensus 304 w~~~~~ 309 (357)
+|+.+.
T Consensus 407 ~D~~t~ 412 (470)
T PLN02193 407 LDTETL 412 (470)
T ss_pred EEcCcC
Confidence 888875
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.11 E-value=32 Score=30.30 Aligned_cols=58 Identities=19% Similarity=0.085 Sum_probs=36.5
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee--eec-c-CCccceEEEeecCce
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA--EAL-W-GHTGALLCLINVGDL 291 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~-~-~~~~~v~~~~~~~~~ 291 (357)
-...+.|+|.|++++|++--..|.|++++..+....... ... . ......+.++++|++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345688999999987777655799999986544321111 111 1 124567888887664
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=82.67 E-value=29 Score=29.57 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred EcCcchhhhhccccccccEEE-----EEEecCC-e-EEEEeCCCe--EEEEEccccccccccccceeeeeEeeccc-cce
Q 038568 168 NASNYKCLESVNKAHEDAVNA-----VVVSDNG-V-VYTGSADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHR-STV 237 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~-~-l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v 237 (357)
|..+|..+..+ ......... =+|.++| + |+.+..||. +.+.|+. ..+ +..+.... ...
T Consensus 16 D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~----------t~~-i~QLTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRL-TPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLA----------TGE-ITQLTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE--S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETT----------T-E-EEE---SS-B-T
T ss_pred CCCCCceEEEe-cCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcc----------cCE-EEECccCCCCCc
Confidence 55566665555 222222222 2456777 4 555555665 5555554 222 22222222 223
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCce
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
....++|+.+.++-...+..|+-.|+++.+..
T Consensus 84 ~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp TT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred cceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 35667788888766656678999999887654
|
|
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=82.58 E-value=23 Score=28.27 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=47.8
Q ss_pred cccccEEEEEEec---------CeEEEEecCCeEEEEEcCcchhhhhccccccccEE---EEEEe-cCCeEEEEeCCCeE
Q 038568 140 EHWDAVSDLVVKQ---------GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN---AVVVS-DNGVVYTGSADGRI 206 (357)
Q Consensus 140 ~~~~~v~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~-~~~~l~~~~~d~~i 206 (357)
.+...|+|++--. ..|+.|..+|.|.|.|......+..+ .-..-++. .-.+. -|.++++++.||.|
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~-~lpsvPv~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQV-QLPSVPVFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEE-ecCCCceEEEEEeeeeccceEEEEEeCCCEE
Confidence 4456788887543 68999999999999999877766665 22222221 11233 34479999999999
Q ss_pred EEE
Q 038568 207 RVW 209 (357)
Q Consensus 207 ~i~ 209 (357)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 864
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.49 E-value=54 Score=32.48 Aligned_cols=185 Identities=17% Similarity=0.236 Sum_probs=99.3
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEe---c----CC---eEEEEeC---------CCeEEEEEcccccccccc-
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVS---D----NG---VVYTGSA---------DGRIRVWERSVVDHNKER- 220 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~----~~---~l~~~~~---------d~~i~i~d~~~~~~~~~~- 220 (357)
...|.+....+++.+..+.......+.+++.. . .+ +|++|.. -|.+.+||+-..-++...
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 34566666666666555533333444444432 1 12 4666643 488999997521111110
Q ss_pred ccceeeeeE-eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC
Q 038568 221 KSRHMLVTT-LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR 299 (357)
Q Consensus 221 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 299 (357)
....+.... .+..+++|..++= -+| +|+++ ....|.+|+++....+.... +..-...+.++..-.++|+.|.--.
T Consensus 1083 ~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~l~r~~~ligVa-FiD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1083 FTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRKLDRDSELIGVA-FIDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred cccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEEeccCCcceeeE-EeccceeEEehhhhhhheehhhhhh
Confidence 111111111 1234566766653 355 45554 34569999995444332221 2222334455555566888888777
Q ss_pred eEEEeeCCCCcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 300 TVRIWQRGKENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|.+....... ..+..+.. ..-.+.++.|--++. ...++.+..|+.|++|
T Consensus 1159 sisfl~fqeep--~rlsL~srd~~~l~v~s~EFLVdg~-----~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEP--YRLSLLSRDFEPLNVYSTEFLVDGS-----NLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCc--eEEEEeecCCchhhceeeeeEEcCC-----eeEEEEEcCCCcEEEE
Confidence 78877766531 22222221 223477888887764 3578888899999875
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=82.23 E-value=34 Score=29.95 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.7
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.++...+..+ .|++...+|.|.+||
T Consensus 191 ~I~~v~~d~~r~-------~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 191 KIVQVAVDPSRR-------LLYTLTSDGSIQVWD 217 (422)
T ss_dssp -EEEEEEETTTT-------EEEEEESSE-EEEEE
T ss_pred ceeeEEecCCcC-------EEEEEeCCCcEEEEE
Confidence 388999988887 999999999999996
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.06 E-value=14 Score=36.16 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
......++|++ .+++.+...|.|+++-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34556778888 9999999999999997543
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.71 E-value=37 Score=30.12 Aligned_cols=75 Identities=17% Similarity=0.063 Sum_probs=47.7
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEec---------ccCCceeeeeec--------cCCccceEEEeecCc-----eE
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWER---------ERDHRMVFAEAL--------WGHTGALLCLINVGD-----LL 292 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~~~--------~~~~~~v~~~~~~~~-----~l 292 (357)
-.|..+..++.|..++..+.+|.+.++=. ++++.....+++ ....-.+...+|+|+ .|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 34778888999999999999995544321 122221111111 011223456678776 67
Q ss_pred EEecCCCeEEEeeCCCC
Q 038568 293 ASGSADRTVRIWQRGKE 309 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~ 309 (357)
..-..|+.||+||....
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88888999999999865
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=80.88 E-value=4.7 Score=19.23 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=17.3
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEE
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
...++++++|+++++=+.+..|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776667777654
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=80.65 E-value=12 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=24.1
Q ss_pred cceeEEEEecCCCEEEEEec-CCeEEEEeccc
Q 038568 235 STVNALALNGDGSLLFSGGC-DRWIVVWERER 265 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 265 (357)
...+.|.++|++++|.+++. .+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45678999999998877664 68899997653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 357 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-04 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.74 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.72 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.68 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.66 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.64 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.63 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.62 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.61 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.61 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.6 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.55 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.53 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.51 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.5 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.42 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.42 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.41 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.39 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.34 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.3 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.29 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.27 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.26 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.23 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.21 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.21 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.19 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.17 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.15 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.14 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.04 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.02 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.0 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.99 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.98 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.95 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.93 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.9 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.85 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.84 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.79 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.78 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.72 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.72 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.72 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.71 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.71 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.69 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.68 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.67 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.66 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.56 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.54 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.54 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.52 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.5 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.45 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.44 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.4 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.36 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.31 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.18 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.16 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.11 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.09 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.07 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.02 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.94 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.92 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.87 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.86 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.81 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.78 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.72 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.6 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.58 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.56 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.53 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.51 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.5 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.46 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.4 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.39 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.38 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.31 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.28 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.28 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.22 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.21 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.19 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.15 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.06 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.02 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.01 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.91 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.89 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.86 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.84 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.83 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.74 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 96.72 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.7 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.66 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.51 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.5 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.47 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.37 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.35 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.2 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.18 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.01 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.97 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.77 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.45 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.42 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.4 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.46 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.27 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.11 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.61 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.03 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.28 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 88.07 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 86.72 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 86.72 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.56 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.94 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.17 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 81.04 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 80.03 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=349.47 Aligned_cols=272 Identities=25% Similarity=0.441 Sum_probs=248.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|++++|+ +++|++|+.| .|+|||+ .+++....+.+ |...|.+++|+|++ |++|+.|++|++||+.+.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~---h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFERTLKG---HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEET-TTCCCCEEECC---CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEEEEec---cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999999 8999999999 9999999 89999999998 99999999999987 999999999999999877
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+....+ .+|...|.+++|+| +++++|+.|++|++||+++++++..+ .
T Consensus 183 ~~~~~~------------------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~ 231 (410)
T 1vyh_C 183 ECIRTM------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-T 231 (410)
T ss_dssp CEEECC------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-E
T ss_pred ceeEEE------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-e
Confidence 543322 28999999999999 89999999999999999999999888 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC--------------
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-------------- 245 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------- 245 (357)
.|...+.++.++|++ .|++|+.|+.|++||++ .......+..|...|.+++|+|+
T Consensus 232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 1vyh_C 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----------TKECKAELREHRHVVECISWAPESSYSSISEATGSET 301 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCeEEEEECC----------CCceeeEecCCCceEEEEEEcCcccccchhhhccccc
Confidence 899999999999998 59999999999999997 44566778889999999999996
Q ss_pred ------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 246 ------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 246 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
+.+|++|+.|+.|++||++++. ....+.+|...|.++.|+++ +|++|+.||.|++||+.++ +++..
T Consensus 302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~ 375 (410)
T 1vyh_C 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKT 375 (410)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEE
Confidence 6789999999999999999876 44566789999999999876 9999999999999999887 56778
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+|...|++++|+|+++ +|++|+.||+|++||
T Consensus 376 ~~~h~~~v~~l~~~~~~~-------~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWE 408 (410)
T ss_dssp EECCSSCEEEEEECSSSS-------CEEEEETTSEEEEEC
T ss_pred EcCCCCcEEEEEEcCCCC-------EEEEEeCCCcEEEEe
Confidence 889999999999999998 999999999999997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=335.07 Aligned_cols=287 Identities=17% Similarity=0.263 Sum_probs=249.8
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
.++.+++++ |.+.|++++|+ +++|++|+.| .|++||. .+++.+..+.. |...|.+++|+|++ |+++
T Consensus 45 ~~~~~~l~g-----H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 45 MRTRRTLRG-----HLAKIYAMHWGTDSRLLLSASQDGKLIIWDS-YTTNKVHAIPL---RSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp CCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTTEEEEEET-TTCCEEEEEEC---SSSCEEEEEECTTSSEEEEE
T ss_pred chhheeecC-----CCCceEEEEECCCCCEEEEEeCCCcEEEEEC-CCCCcceEeec---CCccEEEEEECCCCCEEEEE
Confidence 445566665 99999999999 8999999999 9999999 88888888887 99999999999987 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIW 167 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iw 167 (357)
+.|+.+++|++.+.+...... ..+.+|...|.++.|.+ +.+++++.|+.|++|
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~--------------------------~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~w 169 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVS--------------------------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEE--------------------------EEEECCSSCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred eCCCeEEEEECccCCCcceeE--------------------------EEecCCCccEEEEEECCCCcEEEEECCCcEEEE
Confidence 999999999998754211111 11238899999999999 889999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
|+++++.+..+ .+|...|.+++|+|++ .+++|+.|+.|++||++ .......+.+|...|.+++|+|++
T Consensus 170 d~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~----------~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 170 DIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp ETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TCSEEEEECCCSSCEEEEEECTTS
T ss_pred ECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC----------CCeeEEEEcCCcCCEEEEEEcCCC
Confidence 99999998888 7899999999999998 69999999999999998 445667788999999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
++|++|+.||.|++||+++.+..... ....+...+.+++|+++ +|++|+.||.|++||+.++ +.+..+.+|..+
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~ 314 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNR 314 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEE-ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCc
Confidence 99999999999999999987643322 22334457889998876 9999999999999999887 567788899999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++|+|++. +|+||+.||.|++||
T Consensus 315 v~~~~~s~dg~-------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDGM-------AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCC-------EEEEEcCCccEEecC
Confidence 99999999998 999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=332.42 Aligned_cols=281 Identities=20% Similarity=0.281 Sum_probs=248.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe------cceEEEeeCC-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH------NSLLYAASLN-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s------~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+...+.+++ |.+.|++++|+ +++|++|+.| +|+||++ ...+. ...+.+ |...|.+++|+++.
T Consensus 22 g~~~~~~~~-----H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~-~~~~~~~~~~l~g---h~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 22 GILFKQEQA-----HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDERLDLQWSLEG---HQLGVVSVDISHTL 92 (321)
T ss_dssp EEEEEETTS-----SSSCEEEEEEC-------CEEEEEETTSCEEEEEE-ETTEEEEEEEECC---CSSCEEEEEECSSS
T ss_pred hheeeeccc-----CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEEC-CCCCeeeeeeecc---CCCCEEEEEECCCC
Confidence 344455554 99999999996 4589999999 9999999 65443 345676 99999999999987
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+++++.|++|++||+.+++....+. .|...+.+++|+| ++|++++.
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~------------------------------~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSID------------------------------AGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE------------------------------CCTTCCCCEEECTTSSEEEEECT
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEe------------------------------CCCccEEEEEECCCCCEEEEEcC
Confidence 9999999999999999886554443 5667888999999 89999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
||.|++||+++++....+ ..+...+.+++|+|++ +|++|+.|+.|++||++ ..+.+..+.+|..+|.+
T Consensus 143 dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~----------~~~~~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA----------TGKLLHTLEGHAMPIRS 211 (321)
T ss_dssp TSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TTEEEEEECCCSSCCCE
T ss_pred CCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC----------CCcEEEEEcccCCceeE
Confidence 999999999999888877 7788899999999999 69999999999999998 45667788899999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
++|+|++++|++|+.|+.|++||+++.. ....+.+|...|.+++|+++ +|++++.|+.|++||++++ +++..
T Consensus 212 l~~spd~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~ 285 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHT 285 (321)
T ss_dssp EEECTTSCEEEEECTTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEECCCcc---eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEE
Confidence 9999999999999999999999999776 45567789999999999876 9999999999999999987 77888
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+|.+.|.+++|+|++. +|++++.||.|++||
T Consensus 286 ~~~h~~~v~~v~~s~~g~-------~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNGS-------KIVSVGDDQEIHIYD 318 (321)
T ss_dssp ECCCSSCEEEEEECTTSS-------EEEEEETTCCEEEEE
T ss_pred EcCCCCcEEEEEECCCCC-------EEEEEeCCCeEEEEe
Confidence 899999999999999998 999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=324.32 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=246.5
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
.+..+++++ |.+.|++++|+ +++|++|+.| +|+|||. .+++....+.. |...|.+++|+|++ |+++
T Consensus 54 ~~~~~~l~g-----H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~---~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 54 MKTRRTLKG-----HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-FTTNKEHAVTM---PCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp CCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TTCCEEEEEEC---SSSCCCEEEECTTSSEEEEE
T ss_pred cEEEEEecC-----CCCeEEEEEECCCCCEEEEEeCCCeEEEEEC-CCCCcceEEec---CCCCEEEEEECCCCCEEEEe
Confidence 345566775 99999999999 8999999999 9999999 88888888887 89999999999987 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|+.+++|++.......... ....+..|...|.+++|++ ..|++++.|++|++
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~------------------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAA------------------------KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGG------------------------GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred eCCCCEEEEEEeccccccccc------------------------cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 999999999986543211000 0012237899999999999 78999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecC--C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDN--G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
||+++++.+..+ ..|...|.++.++|+ + .|++|+.|+.|++||++ ....+..+..|...|++++|+
T Consensus 181 wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~----------~~~~~~~~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 181 WDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR----------SGQCVQAFETHESDVNSVRYY 249 (354)
T ss_dssp EETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT----------TCCEEEEECCCSSCEEEEEEC
T ss_pred EeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC----------CCcEEEEecCCCCCeEEEEEe
Confidence 999999999888 889999999999874 4 69999999999999998 455677788999999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
|++++|++|+.|++|++||++..+..... ....+...+.+++|+++ +|++|+.|+.|++||+.++ ..+..+.+|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h 325 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECC
Confidence 99999999999999999999977643222 22233456788888765 9999999999999999887 566778899
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++|++++|+|+++ +|++|+.||+|++|+
T Consensus 326 ~~~v~~l~~spdg~-------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDGT-------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTSS-------CEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCCC-------EEEEEcCCCCEEecC
Confidence 99999999999998 999999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=324.26 Aligned_cols=276 Identities=17% Similarity=0.167 Sum_probs=225.2
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCc-----------cccceeccccCCCCceEEEEEecCc-eEEeecCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDY-----------SHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~ 93 (357)
|...|.+++|+ |++|++++.+++++||. ... ........ +...|.+++|+|++ |++|+.||+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~-~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~d~~l~~~s~dg~ 104 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGASSLSGRCWAG-SLWLFKDPCAAPNEGFCSAGVQ---TEAGVADLTWVGERGILVASDSGA 104 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEECCSSSCCCE-EEEEESSGGGTTCGGGCSEEEE---ESSCEEEEEEETTTEEEEEETTSE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCceEEeec-eeeeeccccccCCcceeeeeec---cCCCEEEEEEeCCCeEEEEECCCE
Confidence 78889999999 88888887338898874 210 11111112 67789999999988 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
|++||+++++........ ..+|...|++++|+| ++|++|+.|++|++||+++
T Consensus 105 v~lWd~~~~~~~~~~~~~--------------------------~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 105 VELWELDENETLIVSKFC--------------------------KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEECTTSSCEEEEEE--------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEeccCCCceeEeecc--------------------------ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999999988755433311 128999999999999 8999999999999999999
Q ss_pred chhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe--eccccceeEEEEec-CC
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL--VKHRSTVNALALNG-DG 246 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~ 246 (357)
++++..+ .+|...|.+++|+|++ .|++++.|+.|++||++. .+....+ ..+...+.+++|+| ++
T Consensus 159 ~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 159 QVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC----------PKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp TEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS----------SSCEEECC----CCCEEEEEECSSCT
T ss_pred CcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccc----------cceeeeeecceeeccceeeeecCCCC
Confidence 9999998 8999999999999987 488999999999999982 2233333 34556789999999 55
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
++|++|+.||.|++||+++++. +..+.+|...|.+++|+|+ +|++|+.|++|+|||++++ + +..+.+|.+
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~ 300 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRD 300 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSS
T ss_pred cceEEeccCCcEEEEECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCC
Confidence 6889999999999999998874 4567789999999999875 7999999999999999986 3 345789999
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++++|+|+++ .+|+|+|.||+|++|+
T Consensus 301 ~V~~v~~sp~~~------~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 301 FVRDATWSPLNH------SLLTTVGWDHQVVHHV 328 (344)
T ss_dssp CEEEEEECSSST------TEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCC------eEEEEEcCCCeEEEEE
Confidence 999999999876 2678999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=325.81 Aligned_cols=280 Identities=19% Similarity=0.208 Sum_probs=224.5
Q ss_pred CccceeEEEEe--cceEEEeeC------C-ceEEEeccCCccccceec-cccCCCCceEEEEEecCc-eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASL------N-EINVFDLISDYSHVDTFS-NDLSSSGSVKSITFHITK-IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~------d-~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~v 96 (357)
|.+.|++++|+ |++||+|+. | .|++|+. .++.+...+. ....|...|.+++|+|++ +++++.||+|++
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~-~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD-PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS-CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC-CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEE
Confidence 99999999999 999999997 6 7889988 6554433221 111289999999999988 889999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC 174 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 174 (357)
||+.+++....... ...+|...|.+++|+| ++|++++.|+.|++||++++++
T Consensus 120 Wd~~~~~~~~~~~~--------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 120 WEILEKESLLVNKF--------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp C--------CCCCE--------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred eeccccceeEEEee--------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99987764322211 1127899999999999 8999999999999999999999
Q ss_pred hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEEE
Q 038568 175 LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLFS 251 (357)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 251 (357)
+..+ ..|...|.+++|+|++ .+++++.|+.|++||++..+ .........+...+.+++|+|+ +.+|++
T Consensus 174 ~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--------~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 174 LKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--------PATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp EEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS--------CBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred EEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc--------eeeeeeeccccccccchhhhhcccceEEE
Confidence 9888 8899999999999987 58999999999999998211 1112233456778999999996 568999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
|+.|+.|++||+++++. ...+.+|...|.+++|+++ +|++|+.|++|+|||++++ +.+. ..+|.+.|+++
T Consensus 245 g~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~-~~~H~~~V~~v 317 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDS---AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFR-DLSHRDFVTGV 317 (357)
T ss_dssp EESSSCEEEEESSCGGG---CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEE-ECCCSSCEEEE
T ss_pred eecccceeEEECCCCcE---eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeE-ECCCCCCEEEE
Confidence 99999999999998774 4566789999999999864 7999999999999999987 4444 34799999999
Q ss_pred EEee-CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAIS-SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~-~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+| ++. +|+|+|.||+|++||
T Consensus 318 afsP~d~~-------~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 318 AWSPLDHS-------KFTTVGWDHKVLHHH 340 (357)
T ss_dssp EECSSSTT-------EEEEEETTSCEEEEE
T ss_pred EEeCCCCC-------EEEEEcCCCeEEEEE
Confidence 9998 677 999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=331.26 Aligned_cols=299 Identities=15% Similarity=0.218 Sum_probs=245.6
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
.....+.++|++ |.+.|++++|+ +++|++|+.| +|+|||. .+++....+.. |...|.+++|+|++ |
T Consensus 53 ~~~~~~~~~l~g-----H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~---h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 53 PTDLVCCRTLQG-----HSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-LTSQKTHAIKL---HCPWVMECAFAPNGQSV 123 (380)
T ss_dssp CCCCEEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEET-TTTEEEEEEEC---CCTTCCCCEECTTSSEE
T ss_pred cceeEEeecccc-----cccEEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCccceEEec---CCCCEEEEEECCCCCEE
Confidence 445667778886 99999999999 8999999999 9999999 88898999988 99999999999987 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDR 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg 162 (357)
++++.|+.+++|++.+........ .....+.+|...|.++.|.| ..|++|+.|+
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~-----------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~ 180 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNM-----------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSS-----------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTS
T ss_pred EEeeCCCcEEEEECCCCccccCCc-----------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCC
Confidence 999999999999997543111000 00123348999999999998 5799999999
Q ss_pred eEEEEEcCcchhhhhcc----ccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 163 SFKIWNASNYKCLESVN----KAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
+|++||+++++.+..+. .+|...|.++.+++ ++ .|++|+.|+.|++||++. ....+..+.+|...
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---------~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI---------TSRAVRTYHGHEGD 251 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT---------TCCCCEEECCCSSC
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC---------CCcceEEECCcCCC
Confidence 99999999988776542 46888999999987 44 699999999999999871 23456678899999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec----cCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL----WGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
|.+++|+|++++|++|+.||+|++||++++......... ..+...+.+++|+++ +|++|+.||.|++||+.+++
T Consensus 252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 999999999999999999999999999988754433221 112234778888765 99999999999999998874
Q ss_pred ceeeeee-ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 CYRCMAF-LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 ~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+.. ..+|.+.|++++|+|++. +|+||+.||+|++||
T Consensus 332 ~~~~~~~~~~~h~~~v~~l~~s~dg~-------~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 332 MVLNLGTLQNSHEGRISCLGLSSDGS-------ALCTGSWDKNLKIWA 372 (380)
T ss_dssp EEEEECCSCSSCCCCCCEEEECSSSS-------EEEEECTTSCEEEEE
T ss_pred eEEEEecccCCCCCceEEEEECCCCC-------EEEEeeCCCCEEEEe
Confidence 3322222 268999999999999999 999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=312.73 Aligned_cols=280 Identities=19% Similarity=0.253 Sum_probs=238.7
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
+..+++++ |.+.|++++|+ +++|++|+.| .|++||+ ++++.+..+.. |..+|.+++|+|++ |++|+
T Consensus 4 ~~~~~~~~-----h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 4 DIKKTFSN-----RSDRVKGIDFHPTEPWVLTTLYSGRVELWNY-ETQVEVRSIQV---TETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp CCEEEEEE-----ECSCEEEEEECSSSSEEEEEETTSEEEEEET-TTTEEEEEEEC---CSSCEEEEEEEGGGTEEEEEE
T ss_pred eeEEeecC-----CCCceEEEEECCCCCEEEEEcCCCcEEEEEC-CCCceeEEeec---cCCcEEEEEEeCCCCEEEEEC
Confidence 45566776 99999999999 9999999999 9999999 88888999988 99999999999987 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIW 167 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw 167 (357)
.|++|++||+.+++....+. +|...|.+++|+| .+|++|+.|++|++|
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFE------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEE------------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CCCEEEEEECCCCcEEEEEe------------------------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 99999999999887554432 8999999999999 899999999999999
Q ss_pred EcCcchhh-hhccccccccEEEEEEecC-C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 168 NASNYKCL-ESVNKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 168 d~~~~~~~-~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
|++++..+ ..+ .+|...|.+++|+|+ + .|++|+.|+.|++||++. .. ........|...+..+.|+|
T Consensus 125 d~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~---~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 125 NWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------ST---PNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp EGGGTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SS---CSEEEECCCTTCEEEEEECC
T ss_pred ECCCCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CC---ccceeccCCcCcEEEEEEEE
Confidence 99887444 444 789999999999994 4 699999999999999972 11 11222335667899999987
Q ss_pred --CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecC
Q 038568 245 --DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEG 320 (357)
Q Consensus 245 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 320 (357)
++.+|++|+.|+.|++||+++++ ....+.+|...|.++.|+|+ +|++|+.||.|++||++++ +.+..+..
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~ 268 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNV 268 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECC
T ss_pred cCCCCEEEEEcCCCeEEEEeCCCCc---cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccC
Confidence 77899999999999999999876 45667789999999999887 8999999999999999987 67778889
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
|...+.+++|+|++. ..++++|+.||.+.
T Consensus 269 ~~~~~~~~~~~~~~~-----~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 269 GLERSWCIATHPTGR-----KNYIASGFDNGFTV 297 (304)
T ss_dssp SSSSEEEEEECTTCG-----GGCEEEEETTEEEE
T ss_pred CCccEEEEEECCCCC-----ceEEEEecCCceEE
Confidence 999999999999874 12588888777543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=316.62 Aligned_cols=296 Identities=20% Similarity=0.272 Sum_probs=236.2
Q ss_pred cceecccccCCCCCCCcc-ceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 13 KHHCIASLKIPSPDPHHM-IISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~-~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
..++++++++ |.+ .|++++|+ |++||+|+.| .|+|||+ +++..........+|...|.+++|+|++ |+
T Consensus 4 ~~~~~~~~~~-----h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~-~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 4 SLVLLGRVPA-----HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEEECC-----STTSCEEEEEECTTSSCEEEEETTSCEEEEEE-ETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEeeeecC-----CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEc-CCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 3456777775 887 99999999 9999999999 9999999 6654332211111399999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|+++++|++..+... .+..+ .+|...|.+++|+| ++|++++.|+.|
T Consensus 78 s~s~D~~v~iw~~~~~~~~-~~~~~---------------------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v 129 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFE-CVTTL---------------------------EGHENEVKSVAWAPSGNLLATCSRDKSV 129 (345)
T ss_dssp EEETTSCEEEEEECCC-EE-EEEEE---------------------------CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCcEEEEEccCCCeE-EEEEc---------------------------cCCCCCceEEEEeCCCCEEEEEECCCeE
Confidence 9999999999998765421 22222 38999999999999 899999999999
Q ss_pred EEEEcCcch---hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 165 KIWNASNYK---CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
++||++++. ++..+ ..|...|.+++|+|++ +|++++.|+.|++||.+ . ........+.+|...|+++
T Consensus 130 ~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~------~--~~~~~~~~~~~h~~~v~~l 200 (345)
T 3fm0_A 130 WVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE------E--DDWVCCATLEGHESTVWSL 200 (345)
T ss_dssp EEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE------T--TEEEEEEEECCCSSCEEEE
T ss_pred EEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec------C--CCEEEEEEecCCCCceEEE
Confidence 999998754 34445 6889999999999998 69999999999999987 1 1234556788999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCc------------eeeeeeccC-CccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHR------------MVFAEALWG-HTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~-~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
+|+|++++|++++.|++|++||...... ......+.+ |...|.+++|+++ .|++++.|+.|++|+
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999753221 112223333 8889999999876 999999999999999
Q ss_pred CCCCcce------eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 306 RGKENCY------RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 306 ~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....... .......+|...|++++|+|++. .+|+||+.||.|++||
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP------GLLASCSDDGEVAFWK 332 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST------TEEEEEETTSCEEEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc------eEEEEcCCCCcEEEEE
Confidence 8754211 11233468999999999999873 1899999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=314.96 Aligned_cols=295 Identities=18% Similarity=0.274 Sum_probs=229.2
Q ss_pred cceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..++++++++ |.++|++++|++++||+|+.| .|++||+ ..+ +....+.. ..|...|.+++|+|++ |++
T Consensus 3 ~~~~~~~~~~-----h~~~v~~~~~s~~~las~~~D~~i~lw~~-~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 3 SINLIKSLKL-----YKEKIWSFDFSQGILATGSTDRKIKLVSV-KYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp CCEEEEEEEC-----CSSCEEEEEEETTEEEEEESSSCEEEEEC-SSSCCEEEEEECT-TCCCSCEEEEEECTTSSEEEE
T ss_pred ccccceeecc-----CCCceeeeccCCCEEEEEcCCCEEEEEEe-cCCCeEEEEEEec-CCccCCEEEEEECCCCCEEEE
Confidence 4556777886 999999999997799999999 9999999 653 33444421 1289999999999987 999
Q ss_pred eecCCeEEEEecCCccc----eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 88 AHQDCKIRVWKITASRQ----HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
++.|++|++||+..... ...+ ..+.+|...|.+++|+| ++|++|+.|
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~---------------------------~~~~~h~~~V~~v~~sp~g~~las~s~D 128 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLL---------------------------AIIEGHENEVKGVAWSNDGYYLATCSRD 128 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEE---------------------------EEEC----CEEEEEECTTSCEEEEEETT
T ss_pred EeCCCcEEEEEcccCcCccccceeE---------------------------EEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 99999999999864321 1111 12248999999999999 899999999
Q ss_pred CeEEEEEcCcc----hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 162 RSFKIWNASNY----KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 162 g~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
++|++||++.. +++..+ ..|...|.+++|+|++ +|++++.|+.|++||.+. ....++..+.+|...
T Consensus 129 ~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~--------~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 129 KSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD--------DDWECVAVLNGHEGT 199 (330)
T ss_dssp SCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSC
T ss_pred CEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--------CCeeEEEEccCCCCc
Confidence 99999999532 345556 7899999999999998 699999999999999861 123567788899999
Q ss_pred eeEEEEecC--CCEEEEEecCCeEEEEecccCCc-----eeeeeeccC-CccceEEEeecCc-eEEEecCCCeEEEeeCC
Q 038568 237 VNALALNGD--GSLLFSGGCDRWIVVWERERDHR-----MVFAEALWG-HTGALLCLINVGD-LLASGSADRTVRIWQRG 307 (357)
Q Consensus 237 v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~ 307 (357)
|.+++|+|+ +.+|++|+.|++|++||++.... ......+.+ |...|.+++|+++ +|++++.||.|++|+..
T Consensus 200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence 999999998 67899999999999999976421 112333444 8899999999866 89999999999999998
Q ss_pred CCcceeeeeeecCCcC-ceEEEEEee--CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEK-PVKSLVAIS--SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~-~v~~~~~~~--~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++.........+|.. .|++++|+| ++. +|+||+.||.|++||
T Consensus 280 ~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-------~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 280 DGEWKVFAKRALCHGVYEINVVKWLELNGKT-------ILATGGDDGIVNFWS 325 (330)
T ss_dssp TTEEEEEEEESCTTTTSCEEEEEEC-----C-------CEEEEETTSEEEEEE
T ss_pred CCceEEEeccccccccceEEEEEEecCCCce-------EEEEecCCCcEEEEE
Confidence 7632122233467887 899999999 566 899999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=307.76 Aligned_cols=283 Identities=22% Similarity=0.387 Sum_probs=241.9
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
+..+...++.+ |.+.|++++|+ +++|++|+.| .|++|+. .+++....+.+ |...|.+++|+|++ |+
T Consensus 11 ~~~~~~~~~~g-----h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 11 PNYALKFTLAG-----HTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISG---HKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp CCCEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEEEECC---CSSCEEEEEECTTSSEEE
T ss_pred CCceeEEEEcc-----cCCcEEEEEECCCCCEEEEeeCCCeEEEEeC-CCcccchhhcc---CCCceEEEEEcCCCCEEE
Confidence 44566667775 99999999999 8999999999 9999999 88888888887 99999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|+.|++||+++++....+. +|...|.+++|+| +++++++.|+.|
T Consensus 82 s~~~d~~i~vwd~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i 131 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLKTLK------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESV 131 (312)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE------------------------------CCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EECCCCEEEEEECCCCcEEEEEc------------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 99999999999999876544332 7889999999999 899999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEE
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALAL 242 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 242 (357)
++||+++++.+..+ ..|...|.+++|+|++ .|++++.|+.|++||++ ..+.+..+ ..+..++..++|
T Consensus 132 ~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~----------~~~~~~~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 132 RIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA----------SGQCLKTLIDDDNPPVSFVKF 200 (312)
T ss_dssp EEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TCCEEEEECCSSCCCEEEEEE
T ss_pred EEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCceeeEEeccCCCceEEEEE
Confidence 99999999988888 7889999999999998 69999999999999997 22333333 346678999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE--Eee---cCceEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LIN---VGDLLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
+|++++|++++.|+.|++||+++++. ...+.+|.....+ ..+ .+.+|++|+.||.|++||+.++ +.+..
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~ 274 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGKC---LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 274 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEE---EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcE---EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhh
Confidence 99999999999999999999998764 3445556544322 122 2449999999999999999987 66788
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcC--CCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGS--LNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~~wd 357 (357)
+.+|...|.+++|+|+++ +|++++ .|+.|++|+
T Consensus 275 ~~~h~~~v~~~~~~p~~~-------~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 275 LQGHTDVVISTACHPTEN-------IIASAALENDKTIKLWK 309 (312)
T ss_dssp ECCCSSCEEEEEECSSSS-------EEEEEECTTTCCEEEEE
T ss_pred hhccCCcEEEEeecCcCC-------ceEEEEccCCccEEEec
Confidence 899999999999999998 899886 699999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=307.90 Aligned_cols=279 Identities=22% Similarity=0.362 Sum_probs=233.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC-----ccccceeccccCCCCceEEEEEecC
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD-----YSHVDTFSNDLSSSGSVKSITFHIT 83 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~ 83 (357)
...+..+|++ |.+.|++++|+ +++|++|+.| +|++|++ .. +.++..+.+ |...|.+++|+|+
T Consensus 6 ~~~l~~~l~g-----H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~-~~~~~~~~~~~~~~~~---h~~~v~~~~~s~d 76 (319)
T 3frx_A 6 VLVLRGTLEG-----HNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKG---HSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEEEECC-----CSSCEEEEEECSSCTTEEEEEETTSEEEEEEE-EEETTEEEEEEEEEEC---CSSCEEEEEECTT
T ss_pred EEEEEEEEcc-----ccceEEEEEccCCCccEEEEecCCccEEEecC-CCCCccccccceEEeC---CcccEEEEEECCC
Confidence 4556667776 99999999998 4799999999 9999998 43 234667787 9999999999998
Q ss_pred c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 84 K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 84 ~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
+ |++++.|++|++||+.+++....+. +|...|.+++|+| .++++|+
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~l~s~s 126 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFV------------------------------GHKSDVMSVDIDKKASMIISGS 126 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE------------------------------CCSSCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEc------------------------------cCCCcEEEEEEcCCCCEEEEEe
Confidence 7 9999999999999999886544332 8999999999999 8999999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-------eEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-------VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
.|++|++||++ ++++..+ .+|...+.++.+.|.. .+++++.|+.|++||++ .......+.+
T Consensus 127 ~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----------~~~~~~~~~~ 194 (319)
T 3frx_A 127 RDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN----------QFQIEADFIG 194 (319)
T ss_dssp TTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT----------TTEEEEEECC
T ss_pred CCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC----------cchhheeecC
Confidence 99999999996 4556666 7899999999999843 59999999999999998 4556677889
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
|...|.+++|+|++++|++++.||.|++||+.+.+... .+. +...+.+++|+|+ +|++++. +.+++|++....
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~ 269 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY---TLS-AQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQY 269 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EEE-CCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---Eec-CCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCe
Confidence 99999999999999999999999999999999876443 333 3467999999988 6666654 559999998752
Q ss_pred ceeeeeee--------cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 CYRCMAFL--------EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 ~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+..+ ..|...+.+++|+|+++ +|++|+.||.|++||
T Consensus 270 ---~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-------~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 270 ---LVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-------TLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ---EEEEECCCCTTCCGGGCCCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred ---eeeccCccccccccCcCcceeEEEECCCCC-------EEEEeecCceEEEEE
Confidence 23322 23567899999999999 999999999999997
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=316.09 Aligned_cols=283 Identities=26% Similarity=0.449 Sum_probs=231.0
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceecccc---------------CCCCceEEEEEecCc--eEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDL---------------SSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~---------------~~~~~v~~l~~~~~~--l~~~ 88 (357)
|.+.|+|++|+ |++||+|+.+.+++|++ .+++.+..+.... .+...|.+++|+|++ |+++
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 99999999999 89999987449999999 8888777776411 012349999999987 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|++|++||+.+++....+ .+|...|.+++|+| .+|++++.|++|++
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~i 191 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMIL------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEE------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCCeEEEEECCCCcEEEEE------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEE
Confidence 99999999999887544332 28999999999999 89999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe-------eccccce
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-------VKHRSTV 237 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~v 237 (357)
||++++++...+ .+...+.+++++| ++ +|++|+.|+.|++||++. ...+..+ .+|...|
T Consensus 192 wd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 192 WDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET----------GFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp EETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT----------CCEEEEEC------CCCSSCE
T ss_pred EECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC----------CcEEEeecccccCCCCCCCCE
Confidence 999998887776 4667899999999 66 699999999999999872 2222222 5789999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCce---------eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRM---------VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
.+++|+|++++|++|+.|+.|++||+++.... .....+.+|...|.+++++++ +|++|+.|+.|++||+
T Consensus 260 ~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999999999999999999764321 123456689999999999876 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++ +.+..+.+|...|.+++|++... ...++.+|+||+.||+|++||
T Consensus 340 ~~~---~~~~~l~~h~~~v~~v~~~~~~~-~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 340 KSG---NPLLMLQGHRNSVISVAVANGSS-LGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECSSCT-TCTTCEEEEEEETTSEEEEEE
T ss_pred CCC---eEEEEECCCCCCEEEEEecCCcC-cCCCCCEEEEECCCCcEEECc
Confidence 987 56778899999999999987431 111223899999999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=310.26 Aligned_cols=285 Identities=16% Similarity=0.254 Sum_probs=230.8
Q ss_pred ccceecccccCCCCCCCccceeEEEE-----e---cceEEEeeCC-ceEEEeccCCc-------cccceeccccCCCCce
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAV-----H---NSLLYAASLN-EINVFDLISDY-------SHVDTFSNDLSSSGSV 75 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~-----s---~~~l~t~~~d-~i~iw~~~~~~-------~~~~~~~~~~~~~~~v 75 (357)
+..++..+|++ |.+.|++++| + +++|++|+.| +|++||+ ... .+...+.+ |...|
T Consensus 9 ~~~~~~~~l~g-----H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~-~~~~~~~~~~~~~~~l~~---h~~~V 79 (343)
T 2xzm_R 9 IQVVKRGILEG-----HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL-YEEEQNGYFGIPHKALTG---HNHFV 79 (343)
T ss_dssp EEEEEEEEEEC-----CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE-CSSCCSSBSEEEEEEECC---CSSCE
T ss_pred eEeeeeeeecc-----chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC-CcCCcccccccccchhcc---CCCce
Confidence 45567777886 9999999999 3 7899999999 9999999 542 34556776 99999
Q ss_pred EEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 76 KSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 76 ~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
.+++|+|++ +++++.|++|++||+++++....+. +|...|.+++|+|
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~------------------------------~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV------------------------------GHQSEVYSVAFSPD 129 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE------------------------------CCCSCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------------------------------CCCCcEEEEEECCC
Confidence 999999987 8999999999999999886544332 8999999999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhc-cccccccEEEEEEecCC-----------eEEEEeCCCeEEEEEccccccccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESV-NKAHEDAVNAVVVSDNG-----------VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-----------~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
++|++++.|+.|++||+......... ...|...+.+++|+|++ +|++++.|+.|++||..
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~------- 202 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN------- 202 (343)
T ss_dssp TTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-------
T ss_pred CCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-------
Confidence 79999999999999999743222111 13688899999999975 59999999999999954
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCC
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSAD 298 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d 298 (357)
......+.+|...|.+++|+|++++|++|+.||.|++||+....... ..+ .+...|.+++|+|+ .+++++.|
T Consensus 203 ----~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~--~~~-~~~~~v~~v~~sp~~~~la~~~d 275 (343)
T 2xzm_R 203 ----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ--REF-DAGSTINQIAFNPKLQWVAVGTD 275 (343)
T ss_dssp ----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS--EEE-ECSSCEEEEEECSSSCEEEEEES
T ss_pred ----CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc--eee-cCCCcEEEEEECCCCCEEEEECC
Confidence 34556778899999999999999999999999999999995443221 111 24556999999988 45556678
Q ss_pred CeEEEeeCCCCcceeeeeee-----------cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 299 RTVRIWQRGKENCYRCMAFL-----------EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 299 g~i~vw~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|++|++.+++... +..+ .+|...|++++|+|+++ +|++|+.||.|++||
T Consensus 276 ~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 276 QGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-------KLFAGFTDGVIRTFS 337 (343)
T ss_dssp SCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-------CEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCC-------eEEEecCCceEEEEE
Confidence 889999998764322 1122 27888999999999998 999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=330.00 Aligned_cols=322 Identities=19% Similarity=0.323 Sum_probs=243.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccc----cCCCCceEEEEEecCc
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSND----LSSSGSVKSITFHITK 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~ 84 (357)
.+.++.+++.+ |.+.|++++|+ +++||+|+.| +|++||. .+++.+..+... .+|.+.|.+++|+|++
T Consensus 178 ~~~~~~~~l~~-----H~~~V~~v~fspdg~~las~s~D~~i~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 178 PPFKFKSTFGE-----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp TTBEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred CCCeEeeeecc-----ccCceEEEEECCCCCEEEEEECCCcEEEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 34566777775 99999999999 8999999999 9999999 888777776310 0299999999999987
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceee---------eecCCCeEEEecc----cccccccccccEEEEE
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR---------SVLPNNYVTVRRH----KKRLWLEHWDAVSDLV 149 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~ 149 (357)
|++++.|++|++||+.+++....+............ ....++.+.+... ....+.+|...|.+++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 999999999999999988765554322211111111 1111222222111 1134568999999999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccc-----------------------------------------------
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK----------------------------------------------- 180 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------------- 180 (357)
|+| ++|++++.|++|++||+.+++....+..
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 411 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 411 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecC
Confidence 999 8999999999999999887654322100
Q ss_pred ----------------------------------cccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 181 ----------------------------------AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 181 ----------------------------------~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.+...+.+++|+|++ +|++|+.|+.|++||+. .. ...
T Consensus 412 ~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~------~~--~~~ 483 (611)
T 1nr0_A 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS------GA--SVS 483 (611)
T ss_dssp SCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE------TT--EEE
T ss_pred CCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEcc------CC--cee
Confidence 012346788899998 58999999999999986 11 111
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
.... .+|...|++++|+|++++|++++.|++|++||+.+...........+|...|.+++|+|+ +|++|+.|++|++
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEE
Confidence 2233 679999999999999999999999999999999873332111123459999999999987 9999999999999
Q ss_pred eeCCCCcceeeeeeecCC-cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLEGH-EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+.++... .+..+.+| ...|++++|+|++ .|++++.||+|++||
T Consensus 563 W~~~~~~~~-~~~~~~~h~~~~v~~v~fs~d~--------~l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 563 WNMNKPSDH-PIIIKGAHAMSSVNSVIWLNET--------TIVSAGQDSNIKFWN 608 (611)
T ss_dssp EETTCTTSC-CEEETTSSTTSCEEEEEEEETT--------EEEEEETTSCEEEEE
T ss_pred EECCCcccc-cchhhccCcccCeeEEEEcCCC--------EEEEecCCCCEEEEe
Confidence 999876321 12567789 8999999999997 599999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=303.58 Aligned_cols=287 Identities=18% Similarity=0.279 Sum_probs=235.8
Q ss_pred cccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCcc-----ccceeccccCCCCceEEEEEe
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYS-----HVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~ 81 (357)
....++..+|++ |.+.|++|+|+ +++||||+.| +|+|||+ .+.+ +...+.+ |...|.+++|+
T Consensus 25 ~~~~~l~~tL~G-----H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~-~~~~~~~~~~~~~l~~---h~~~V~~~~~s 95 (340)
T 4aow_A 25 TEQMTLRGTLKG-----HNGWVTQIATTPQFPDMILSASRDKTIIMWKL-TRDETNYGIPQRALRG---HSHFVSDVVIS 95 (340)
T ss_dssp -CEEEEEEEECC-----CSSCEEEEEECTTCTTEEEEEETTSCEEEEEE-CCSSSCSEEEEEEECC---CSSCEEEEEEC
T ss_pred CCceEEEEEECC-----ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC-CCCCcccceeeEEEeC---CCCCEEEEEEC
Confidence 344566667876 99999999998 5799999999 9999998 5433 4556676 99999999999
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
|++ |++++.|+.|++|+........... .+...+..+.+.+ .++++
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l~s 145 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFV------------------------------GHTKDVLSVAFSSDNRQIVS 145 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------------------CCSSCEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEcccccceEEeecccceeeeec------------------------------CCCCceeEEEEeecCcccee
Confidence 987 9999999999999998775443332 5566778888888 89999
Q ss_pred EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
++.|+.+++||+............|...+..+++++++ .+++++.|+.|++||++ ..+....+.+|.
T Consensus 146 ~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~----------~~~~~~~~~~h~ 215 (340)
T 4aow_A 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA----------NCKLKTNHIGHT 215 (340)
T ss_dssp EETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT----------TTEEEEEECCCS
T ss_pred ecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC----------CCceeeEecCCC
Confidence 99999999999976554444336788999999999876 47899999999999998 456677888999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCccee
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
.+|++++|+|++++|++|+.||.|++||+++.+.+. .+. +...+.++.++++ .+++++.|+.|++||++++....
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY---TLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---eec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEE
Confidence 999999999999999999999999999999876443 333 4467889999887 78888899999999998763221
Q ss_pred e------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 C------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. .....+|...|++++|+|+++ +|++|+.||.|++||
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~-------~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWSADGQ-------TLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EECCC-------CCCCCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred eccccceeeeccCCCCCEEEEEECCCCC-------EEEEEeCCCEEEEEe
Confidence 1 123457889999999999998 999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=322.42 Aligned_cols=304 Identities=15% Similarity=0.161 Sum_probs=246.6
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
+.+.+.+++|+ |++||+++.+.|++|++ .+++....+.+ |...|++++|+|++ |++|+.|++|+|||+.+++
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~-~~~~~~~~~~~---h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPV-GSLTDTEIYTE---HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEET-TCSSCCEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred ccCceeEEeeCCCCCEEEeCCCCEEEEecC-CCcccCeEecC---CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 67889999999 89999988559999999 88888889988 99999999999997 9999999999999997554
Q ss_pred ceeeeeecCccccce-eeeecCCCeEEE-ec---------------ccccccccccccEEEEEEec--C-eEEEEecCCe
Q 038568 104 QHQLVSTLPTVKDRL-IRSVLPNNYVTV-RR---------------HKKRLWLEHWDAVSDLVVKQ--G-LMYSVSWDRS 163 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~ 163 (357)
.... ..+......+ ...+.+++...+ .. .....+.+|...|.+++|+| . .|++++.|++
T Consensus 93 ~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 93 HILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp CCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred ceee-EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 3211 1122121111 223333332221 11 11245678999999999999 3 6999999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee-------cccc
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-------KHRS 235 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~ 235 (357)
|++||..+++++..+ .+|...|.+++|+|++ +|++++.|+.|++||+. ..+....+. +|..
T Consensus 172 v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----------~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----------DGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TCCEEEECBCTTSSSCSSSS
T ss_pred EEEEECCCCeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC----------CCcEeeeeccccccccccCC
Confidence 999999988888888 8899999999999999 69999999999999987 223333342 7999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeee
Q 038568 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
.|.+++|+|++++|++++.|++|++||+++++....+.....+......+.|.++.+++++.|+.+++|+..++ +..
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~---~~~ 317 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG---SID 317 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT---EEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC---Ccc
Confidence 99999999999999999999999999999877554443323345566778888889999999999999999886 466
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+.+|...|++++|+|+++ +|++++.||+|++||
T Consensus 318 ~~~~gh~~~v~~l~~spdg~-------~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 318 QVRYGHNKAITALSSSADGK-------TLFSADAEGHINSWD 352 (611)
T ss_dssp EEECCCSSCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred eEEcCCCCCEEEEEEeCCCC-------EEEEEeCCCcEEEEE
Confidence 77889999999999999998 999999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-44 Score=302.95 Aligned_cols=281 Identities=16% Similarity=0.175 Sum_probs=240.6
Q ss_pred eecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCcc------ccceeccccCCCCceEEEEEecC----
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYS------HVDTFSNDLSSSGSVKSITFHIT---- 83 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~---- 83 (357)
++.+.+++ |.+.|++++|+.++|++|+.| .|++|++ .+++ .+..+.+ |...|.+++|+|+
T Consensus 7 ~~~~~~~~-----h~~~i~~~~~~~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 7 ATANAGKA-----HDADIFSVSACNSFTVSCSGDGYLKVWDN-KLLDNENPKDKSYSHFV---HKSGLHHVDVLQAIERD 77 (397)
T ss_dssp EEEEESSC-----SSSCEEEEEECSSEEEEEETTSEEEEEES-BCCTTCCGGGGEEEEEC---CTTCEEEEEEEEEEETT
T ss_pred hhhhhhhh-----hhcCeEEEEecCCeEEEEcCCCEEEEEEC-CCcccccCCCcceEEec---CCCcEEEEEEecccccC
Confidence 34455554 999999999999999999999 9999999 7766 6777777 9999999999987
Q ss_pred ----c-eEEeecCCeEEEEecCCccc-----eeeeeecCccccceeeeecCCCeEEEecccccccccc-----cccEEEE
Q 038568 84 ----K-IFTAHQDCKIRVWKITASRQ-----HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH-----WDAVSDL 148 (357)
Q Consensus 84 ----~-l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~ 148 (357)
. |++++.|+.|++||+.+++. ...+. .| ...|.++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~v~~~ 127 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD------------------------------LLDSDMKKHSFWAL 127 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC------------------------------CSCTTGGGSCEEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeec------------------------------ccccccCCCcEEEE
Confidence 4 99999999999999987764 22222 45 5899999
Q ss_pred EEe----c--Ce-EEEEecCCeEEEEEcCc------chhhh-----hcc------ccccccEEEEEEecCCeEEEEeCCC
Q 038568 149 VVK----Q--GL-MYSVSWDRSFKIWNASN------YKCLE-----SVN------KAHEDAVNAVVVSDNGVVYTGSADG 204 (357)
Q Consensus 149 ~~~----~--~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~------~~~~~~v~~~~~~~~~~l~~~~~d~ 204 (357)
+|+ | .+ |++++.||.|++||+++ ++.+. .+. ..|...+.+++|+|++.+++++.|+
T Consensus 128 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 207 (397)
T 1sq9_A 128 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNG 207 (397)
T ss_dssp EEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTS
T ss_pred EEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCC
Confidence 999 8 77 99999999999999998 77776 552 2378889999999988888999999
Q ss_pred eEEEEEccccccccccccceeeeeEeec---c---ccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeeeec
Q 038568 205 RIRVWERSVVDHNKERKSRHMLVTTLVK---H---RSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~ 275 (357)
.|++||++ ....+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++. ...+
T Consensus 208 ~i~i~d~~----------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~---~~~~ 274 (397)
T 1sq9_A 208 TVQISELS----------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER---IGSL 274 (397)
T ss_dssp EEEEEETT----------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE---EEEE
T ss_pred cEEEEECC----------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc---ccee
Confidence 99999998 3456677777 8 9999999999999999999999 9999999998764 4445
Q ss_pred cC-------------CccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec------CC-------------
Q 038568 276 WG-------------HTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE------GH------------- 321 (357)
Q Consensus 276 ~~-------------~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~h------------- 321 (357)
.+ |...|.+++|+++ +|++++.||.|++||++++ +.+..+. +|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhcccccccc
Confidence 55 8999999999866 9999999999999999987 5566676 77
Q ss_pred --cCceEEEEEeeCC----------CCCCCCeEEEEEcCCCCeEEecC
Q 038568 322 --EKPVKSLVAISSS----------SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 322 --~~~v~~~~~~~~~----------~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+|++++|+|++ + +|++++.||.|++||
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~-------~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNE-------SLCCVCLDRSIRWFR 392 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSC-------EEEEEETTTEEEEEE
T ss_pred ccCCceeEEEeccccccccccccccc-------eEEEecCCCcEEEEE
Confidence 9999999999997 6 999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=292.45 Aligned_cols=243 Identities=25% Similarity=0.346 Sum_probs=212.4
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+..+++.+ |.+.|++++|+|++ |++++.||+|++||+.+++....+.
T Consensus 4 ~~~~~~~~---h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~---------------------------- 52 (304)
T 2ynn_A 4 DIKKTFSN---RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ---------------------------- 52 (304)
T ss_dssp CCEEEEEE---ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------------------
T ss_pred eeEEeecC---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------------------
Confidence 44567887 99999999999987 9999999999999999876544332
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
.|..+|.+++|++ ++|++|+.|++|++||+++++.+..+ ..|...|.+++|+|++ +|++|+.|+.|++||++.
T Consensus 53 --~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~- 128 (304)
T 2ynn_A 53 --VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN- 128 (304)
T ss_dssp --CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG-
T ss_pred --ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC-
Confidence 7888999999999 89999999999999999999999888 8899999999999998 699999999999999971
Q ss_pred ccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC----
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---- 289 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 289 (357)
.......+.+|...|.+++|+| ++.+|++|+.|+.|++||+++...... ...+|...+..+.+.+
T Consensus 129 --------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 129 --------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT--LTTGQERGVNYVDYYPLPDK 198 (304)
T ss_dssp --------TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE--EECCCTTCEEEEEECCSTTC
T ss_pred --------CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce--eccCCcCcEEEEEEEEcCCC
Confidence 2245567788999999999999 678999999999999999987664322 2335667777777754
Q ss_pred ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|++|+.|+.|++||++++ +++..+.+|...|++++|+|+++ +|++|+.||+|++||
T Consensus 199 ~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~-------~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLP-------IIISGSEDGTLKIWN 256 (304)
T ss_dssp CEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-------EEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCCCC-------EEEEEcCCCeEEEEE
Confidence 38999999999999999987 77888999999999999999998 999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=316.78 Aligned_cols=276 Identities=25% Similarity=0.436 Sum_probs=240.0
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..++++.+.+ |...|.+++|+ +++|++++.| .|++||. .. +.+..+.+ |...|.+++|+|++ |++
T Consensus 292 ~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~-~~-~~~~~~~~---~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 292 NGQLLQTLTG-----HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG-QHLQTLTG---HSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp TSCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TS-CEEEEECC---CSSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEec-----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CC-CeeEEEeC---CCCCEEEEEECCCCCEEEE
Confidence 3455666665 99999999999 8999999999 9999998 54 55667776 99999999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.|+.|++||.. ++....+ .+|...|.+++|+| ++|++++.|+.|+
T Consensus 362 ~~~dg~v~~~~~~-~~~~~~~------------------------------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 362 ASDDKTVKLWNRN-GQLLQTL------------------------------TGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp EETTSEEEEEETT-CCEEEEE------------------------------ECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred EeCCCEEEEEcCC-CCEEEEe------------------------------cCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 9999999999964 3322222 27889999999999 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+||. +++.+..+ ..|...|.+++|+|++ +|++++.|+.|++||.. .+.+..+.+|...|.+++|+|
T Consensus 411 ~~~~-~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-----------~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 411 LWNR-NGQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-----------GQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EECT-TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------SCEEEEEECCSSCEEEEEECT
T ss_pred EEeC-CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-----------CCEEEEEcCCCCCEEEEEEcC
Confidence 9995 56667777 7899999999999998 69999999999999975 345677889999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
++++|++++.|+.|++||.. ++ ....+.+|...|.+++|+|+ +|++++.||.|++||.. + +++..+.+|.
T Consensus 478 d~~~las~~~d~~i~iw~~~-~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~---~~~~~~~~h~ 549 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNRN-GQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHS 549 (577)
T ss_dssp TSCEEEEEETTSEEEEEETT-SC---EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S---CEEEEEECCS
T ss_pred CCCEEEEEeCCCEEEEEcCC-CC---EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C---CEEEEEcCCC
Confidence 99999999999999999964 44 45567789999999999877 99999999999999964 3 5678889999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++++|+||++ +|+|++.||+|++||
T Consensus 550 ~~v~~~~fs~dg~-------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVWGVAFSPDGQ-------TIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCC-------EEEEEeCCCEEEEeC
Confidence 9999999999998 999999999999998
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=287.78 Aligned_cols=280 Identities=22% Similarity=0.320 Sum_probs=242.1
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
...++.+++++ |.+.|++++|. +++|++|+.| .|++||+ .+++....+.. |...|.+++|+|++ |++
T Consensus 6 ~~~~~~~~l~~-----h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 6 TGYQLSATLKG-----HDQDVRDVVAVDDSKVASVSRDGTVRLWSK-DDQWLGTVVYT---GQGFLNSVCYDSEKELLLF 76 (313)
T ss_dssp CCCEEEEEECC-----CSSCEEEEEEEETTEEEEEETTSEEEEEEE-SSSEEEEEEEE---CSSCEEEEEEETTTTEEEE
T ss_pred ccHHHHHHhhC-----CCCCcEEEEecCCCEEEEEEcCCcEEEEEC-CCCEEEEEeec---CCccEEEEEECCCCCEEEE
Confidence 34577778886 99999999998 9999999999 9999999 88888888887 99999999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIW 167 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw 167 (357)
++.|+.+++|++........+..+ ..|...|.++.|.++++++++.||.|++|
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~~~~~---------------------------~~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDPLYTL---------------------------IGHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC-CEE---------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred ecCCCeEEEEEeeecCCCCcccch---------------------------hhcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 999999999999876433333222 27899999999988999999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec-cccceeEEEEec
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-HRSTVNALALNG 244 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 244 (357)
| .++.+..+ ..|...+.++.+.| ++ .+++++.|+.|++||.. .....+.. |...+.+++|+|
T Consensus 130 d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------~~~~~~~~~~~~~i~~~~~~~ 194 (313)
T 3odt_A 130 K--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND------------KVIKTFSGIHNDVVRHLAVVD 194 (313)
T ss_dssp E--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT------------EEEEEECSSCSSCEEEEEEEE
T ss_pred c--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC------------ceEEEEeccCcccEEEEEEcC
Confidence 9 55666666 78999999999988 55 79999999999999954 33444555 889999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
++. +++++.||.|++||+++++ ....+.+|...+.+++|+++ .|++++.||.|++||++++ +.+..+..|..
T Consensus 195 ~~~-~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~ 267 (313)
T 3odt_A 195 DGH-FISCSNDGLIKLVDMHTGD---VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---SLKQVITLPAI 267 (313)
T ss_dssp TTE-EEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---CEEEEEECSSS
T ss_pred CCe-EEEccCCCeEEEEECCchh---hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---ceeEEEeccCc
Confidence 988 9999999999999999877 44556689999999999988 8999999999999999987 66777888999
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++|+|++. +++++.||.|++||
T Consensus 268 ~i~~~~~~~~~~--------~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 268 SIWSVDCMSNGD--------IIVGSSDNLVRIFS 293 (313)
T ss_dssp CEEEEEECTTSC--------EEEEETTSCEEEEE
T ss_pred eEEEEEEccCCC--------EEEEeCCCcEEEEe
Confidence 999999999986 55688999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=298.44 Aligned_cols=239 Identities=27% Similarity=0.490 Sum_probs=216.5
Q ss_pred cceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccc
Q 038568 62 VDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL 139 (357)
Q Consensus 62 ~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (357)
...+.+ |..+|++++|+|++ |++|+.||+|++||+.+++....+.
T Consensus 101 ~~~l~g---h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~------------------------------ 147 (410)
T 1vyh_C 101 KYALSG---HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK------------------------------ 147 (410)
T ss_dssp SCEEEC---CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC------------------------------
T ss_pred eEeecc---cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe------------------------------
Confidence 455666 99999999999986 9999999999999999886544332
Q ss_pred cccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
+|...|.+++|+| ++|++|+.|++|++||+.+++++..+ .+|...|.+++|+|++ .|++|+.|+.|++||++
T Consensus 148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~---- 222 (410)
T 1vyh_C 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ---- 222 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----
Confidence 8999999999999 89999999999999999999998888 8899999999999998 69999999999999998
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc------
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD------ 290 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 290 (357)
....+..+.+|...|.++.++|++.+|++|+.|+.|++||+.+++ ....+.+|...|.+++|+++
T Consensus 223 ------~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 223 ------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---CKAELREHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp ------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred ------CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeEecCCCceEEEEEEcCcccccch
Confidence 455677888999999999999999999999999999999999876 44566789999999999763
Q ss_pred ----------------eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 291 ----------------LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 291 ----------------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
+|++|+.|+.|++||++++ .++..+.+|...|++++|+|+++ +|++|+.||.|+
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~-------~l~s~s~D~~i~ 363 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGK-------FILSCADDKTLR 363 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-------CEEEEETTTEEE
T ss_pred hhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCC-------EEEEEeCCCeEE
Confidence 7999999999999999987 67788899999999999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 364 vwd 366 (410)
T 1vyh_C 364 VWD 366 (410)
T ss_dssp EEC
T ss_pred EEE
Confidence 997
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=317.64 Aligned_cols=280 Identities=22% Similarity=0.340 Sum_probs=228.6
Q ss_pred eecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-----cccceeccccCCCCceEEEEEecCc-
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-----SHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+....+++ |.+.|++++|+ +++|+||+.| +|++|++ ... .....+.+ |...|.+++|+|++
T Consensus 373 ~~~~~l~~-----H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~-~~~~~~~~~~~~~~~~---h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 373 VLKGTMRA-----HTDMVTAIATPIDNADIIVSASRDKSIILWKL-TKDDKAYGVAQRRLTG---HSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEEEEEC-----CSSCEEEEECCTTCCSEEEEEETTSEEEEEEC-CCSTTCSCEEEEEEEC---CSSCEEEEEECTTSS
T ss_pred chhhhccc-----CCceeEEEEecCCCCCEEEEEeCCCcEEEEEc-cCCCcccccccceecC---CCCcEEEEEECCCCC
Confidence 33445665 99999999998 5799999999 9999999 542 23456676 99999999999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++|+.|++|++||+.+++....+. +|...|.+++|+| .+|++++.|
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~------------------------------~h~~~v~~~~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFV------------------------------GHTKDVLSVAFSLDNRQIVSASRD 493 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE------------------------------CCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEe------------------------------CCCCCEEEEEEeCCCCEEEEEeCC
Confidence 9999999999999998876544332 8999999999999 899999999
Q ss_pred CeEEEEEcCcchhhhhc--cccccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 162 RSFKIWNASNYKCLESV--NKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
++|++||.......... ...|...|.+++|+|++ .+++++.|+.|++||++ .......+.+|...
T Consensus 494 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----------~~~~~~~~~~h~~~ 563 (694)
T 3dm0_A 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS----------NCKLRSTLAGHTGY 563 (694)
T ss_dssp SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT----------TCCEEEEECCCSSC
T ss_pred CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC----------CCcEEEEEcCCCCC
Confidence 99999998654322211 14688899999999986 59999999999999998 45566778899999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeee
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
|++++|+|++++|++|+.||.|++||+++++.+ ..+. +...+.+++|+++ .+++++.|+.|++||+++++ .+
T Consensus 564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~---~~ 636 (694)
T 3dm0_A 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL---YSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS---IV 636 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSBCEEEETTTTEEE---ECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE---EE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE---EEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC---Ch
Confidence 999999999999999999999999999988743 2332 4567899999987 55555567779999999873 33
Q ss_pred eeecCC-------------------cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 AFLEGH-------------------EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 ~~~~~h-------------------~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+..+ .-.+++++|+|+++ +|++|+.||.|++||
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-------~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-------TLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEECCCCC----------------CCCCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred hhhccccccccccccccccccCCceeEEeeeEEEcCCCC-------EEEEEcCCCeEEEEe
Confidence 333221 12378999999999 999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=288.36 Aligned_cols=272 Identities=16% Similarity=0.235 Sum_probs=236.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.+.|++++|+ +++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+|++ |++++.||.|++||+.++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYS-LNGERLGTLDG---HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEET-TTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCchhhhhhhh---cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999 8999999999 9999999 88899999988 99999999999986 999999999999999988
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC-----CeEEEEEcCcchhh
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD-----RSFKIWNASNYKCL 175 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~ 175 (357)
+....+ .+...+.+++|+| .++++++.+ |.|++||+......
T Consensus 107 ~~~~~~-------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 107 QCVATW-------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp CEEEEE-------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred cEEEEe-------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 655443 3567899999999 889999988 99999999876543
Q ss_pred hhcc----------ccccc--cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 176 ESVN----------KAHED--AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 176 ~~~~----------~~~~~--~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
..+. ..+.. .+.+++|+|++ .|++++.||.|++||++. .......+..|...|.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 156 HELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN---------NYEYVDSIDLHEKSISDMQF 226 (369)
T ss_dssp CCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT---------TTEEEEEEECCSSCEEEEEE
T ss_pred eeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC---------CcEeEEEEecCCCceeEEEE
Confidence 3321 23333 89999999998 699999999999999971 24567778889999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC--------------eEEEeeC
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR--------------TVRIWQR 306 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg--------------~i~vw~~ 306 (357)
+|++++|++++.|+.|++||+++++...... +...+.++.++++ ++++++.++ .+++||.
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred CCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 9999999999999999999999887543332 6677888888876 888888888 8999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++ +.+..+.+|...|++++|+|+++ +|++++.||.|++||
T Consensus 303 ~~~---~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 303 IFE---EEIGRVQGHFGPLNTVAISPQGT-------SYASGGEDGFIRLHH 343 (369)
T ss_dssp TTC---CEEEEEECCSSCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred CCC---cchhheecccCcEEEEEECCCCC-------EEEEEcCCCeEEEEE
Confidence 987 66778889999999999999998 999999999999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=292.58 Aligned_cols=287 Identities=17% Similarity=0.207 Sum_probs=233.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|.++|++++|+ +++|++|+.| .|++||+ ++++ .+..+.+ |...|.+++|+|++ |++++.|+.|++||+.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKE---HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEE-ETTEEEEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCcEEeeeeecC---CCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 88999999999 8999999999 9999999 7766 7888887 99999999999987 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh---h
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC---L 175 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~---~ 175 (357)
+++....... ..|...|.+++|+| +++++++.||.|++||++.++. .
T Consensus 83 ~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 83 GRTWKPTLVI----------------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp TTEEEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CCeeeeeEEe----------------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 7754333221 27888999999999 8999999999999999988763 3
Q ss_pred hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccc--------cccceeeeeEeeccccceeEEEEecCC
Q 038568 176 ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE--------RKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
..+...|...|.+++|+|++ +|++++.|+.|++||++....... .......+..+..|...|.+++|+|++
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 135 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 33335678999999999998 699999999999999752211100 011345667777899999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC--Cc------------
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK--EN------------ 310 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~--~~------------ 310 (357)
++|++++.|+.|++||+++++. ...+..|...+.+++|+++ +|+++ .|+.|++|++.+ ++
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMA---VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTE---EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred CEEEEEeCCCEEEEEECCCCce---eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9999999999999999998874 4455678889999999876 66665 999999999987 31
Q ss_pred -----------------ceeee------eee-cCCcCceEEEEEee-CC---CCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 -----------------CYRCM------AFL-EGHEKPVKSLVAIS-SS---SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 -----------------~~~~~------~~~-~~h~~~v~~~~~~~-~~---~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..... ..+ .+|..+|++++|.+ ++ . +|+||+.||.|++||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-------~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-------QFCTTGMDGGMSIWD 358 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-------EEEEEETTSEEEEEE
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-------eEEEecCCCceEEEE
Confidence 00010 223 48999999999774 44 6 999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=293.64 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=229.4
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--c-ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-Cc--
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--N-SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-TK-- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~-~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-- 84 (357)
...+..+.+.+ |.+.|++++|+ + ++|++|+.| .|+|||+ .+++....+.. .+|...|.+++|+| +.
T Consensus 61 ~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 61 KSYKLHRTASP-----FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY-DVQNKTSFIQG-MGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp TTCEEEEEECC-----CSSCEEEEEECSSCTTEEEEEEBTSCEEEEET-TSTTCEEEECC-CSTTCBEEEEEEETTEEEE
T ss_pred cccceEEeccC-----CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeC-CCcccceeeec-CCcCCceeEEEeCCCCCCE
Confidence 34556666765 99999999999 5 899999999 9999999 77776666541 12999999999999 43
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
|++++.|+.|++||+.+. ....+... ..|...|.+++|+| .+|++++.|+
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAKT---------------------------DSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEECC---------------------------CCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEecc---------------------------CCCCCCeEEEEECCCCCEEEEECCCC
Confidence 999999999999999853 22222221 15668899999999 8999999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
.|++||+ +++.+..+ ..|...|.+++|+|++ .+++++.|+.|++||++ ........+..+ +|...|.++
T Consensus 186 ~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~~~~-~~~~~v~~~ 256 (383)
T 3ei3_B 186 RLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR------NIKDKNSYIAEM-PHEKPVNAA 256 (383)
T ss_dssp EEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG------GCCSTTCEEEEE-ECSSCEEEE
T ss_pred CEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC------CCCcccceEEEe-cCCCceEEE
Confidence 9999999 56777777 7899999999999998 59999999999999998 222223444444 689999999
Q ss_pred EEec-CCCEEEEEecCCeEEEEecccCCceeeeeec----cCCc----------cceEEEeecCc-eEEEecCCCeEEEe
Q 038568 241 ALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEAL----WGHT----------GALLCLINVGD-LLASGSADRTVRIW 304 (357)
Q Consensus 241 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~----------~~v~~~~~~~~-~l~~~~~dg~i~vw 304 (357)
+|+| ++++|++++.|+.|++||+++.+....+... ..|. ..+..+.++++ .+ +++.||.|++|
T Consensus 257 ~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iw 335 (383)
T 3ei3_B 257 YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIY 335 (383)
T ss_dssp EECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEE
T ss_pred EEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEE
Confidence 9999 9999999999999999999987654333211 1122 23334555444 23 78899999999
Q ss_pred eCCCCcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 305 QRGKENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+.++ +.+..+.+ |...+..++|+|+++ +|++|+ ||.|++||
T Consensus 336 d~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~-------~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 336 DANSG---GLVHQLRDPNAAGIISLNKFSPTGD-------VLASGM-GFNILIWN 379 (383)
T ss_dssp ETTTC---CEEEEECBTTBCSCCCEEEECTTSS-------EEEEEE-TTEEEEEE
T ss_pred ecCCC---ceeeeecCCCCCceEEEEEEecCcc-------EEEEec-CCcEEEEe
Confidence 99987 55666665 567788889999998 999997 99999997
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=298.74 Aligned_cols=270 Identities=25% Similarity=0.413 Sum_probs=237.7
Q ss_pred CccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCcccee
Q 038568 28 HHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
|...|.|+++++++|++|+.| .|++||. .+++....+.+ |...|.+++|.++.|++|+.||+|++||+.+++...
T Consensus 132 ~~~~v~~~~~d~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~---h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 132 TSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKRILTG---HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEES-SSCCEEEEECC---CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCcEEEEEECCCEEEEEeCCCeEEEEeC-CCCeEEEEEcC---CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 788899999999999999999 9999999 89999999988 999999999966669999999999999999886544
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhh---hhcccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCL---ESVNKAHE 183 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~ 183 (357)
.+. +|...|.+++|+++.+++|+.||.|++||+++++.+ ..+ .+|.
T Consensus 208 ~~~------------------------------~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~ 256 (435)
T 1p22_A 208 TLI------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHR 256 (435)
T ss_dssp EEC------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCS
T ss_pred EEc------------------------------CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCC
Confidence 332 788999999999999999999999999999987765 344 6889
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
..|.++.+ ....+++|+.||.|++||++ ....+..+.+|...|.++.++ ++++++|+.||.|++||+
T Consensus 257 ~~v~~~~~-~~~~l~s~~~dg~i~vwd~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 257 AAVNVVDF-DDKYIVSASGDRTIKVWNTS----------TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp SCEEEEEE-ETTEEEEEETTSEEEEEETT----------TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CcEEEEEe-CCCEEEEEeCCCeEEEEECC----------cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEEC
Confidence 99999999 33479999999999999998 456677888999999999995 679999999999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcc------eeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENC------YRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
++++ ....+.+|...+.++++++.+|++|+.||.|++||+.+++. ..++..+.+|.++|++++| ++.
T Consensus 324 ~~~~---~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-- 396 (435)
T 1p22_A 324 ECGA---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-- 396 (435)
T ss_dssp TTCC---EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS--
T ss_pred CCCC---EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC--
Confidence 9887 45567789999999999999999999999999999976421 1167788999999999999 555
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.||.|++||
T Consensus 397 -----~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 397 -----QIVSSSHDDTILIWD 411 (435)
T ss_dssp -----CEEECCSSSEEEEEC
T ss_pred -----EEEEEeCCCEEEEEE
Confidence 899999999999997
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=296.62 Aligned_cols=286 Identities=22% Similarity=0.394 Sum_probs=234.6
Q ss_pred ccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ 90 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 90 (357)
.+++++..+.+ |.+.|++++|++++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+++.+++++.
T Consensus 147 ~~~~~~~~~~~-----h~~~v~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~ 217 (445)
T 2ovr_B 147 VTGKCLRTLVG-----HTGGVWSSQMRDNIIISGSTDRTLKVWNA-ETGECIHTLYG---HTSTVRCMHLHEKRVVSGSR 217 (445)
T ss_dssp TTCCEEEECCC-----CSSCEEEEEEETTEEEEEETTSCEEEEET-TTTEEEEEECC---CSSCEEEEEEETTEEEEEET
T ss_pred CCCcEEEEEcC-----CCCCEEEEEecCCEEEEEeCCCeEEEEEC-CcCcEEEEECC---CCCcEEEEEecCCEEEEEeC
Confidence 34555666664 778888888887788888877 8888887 77777777776 77888888887777888888
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcC
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 170 (357)
||+|++||+.+++....+ .+|...|.++.+..+++++++.||.|++||++
T Consensus 218 dg~i~~wd~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVL------------------------------MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp TSEEEEEESSSCCEEEEE------------------------------ECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEE------------------------------cCCcccEEEEEECCCEEEEEcCCCEEEEEECC
Confidence 888888887766544333 27889999999977999999999999999999
Q ss_pred cchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
+++++..+ ..|...+.++.+ ....+++++.|+.|++||++ ..+.+..+.+|...+.++.++ +++++
T Consensus 268 ~~~~~~~~-~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 268 TETCLHTL-QGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE----------TGNCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp GTEEEEEE-CCCSSCEEEEEE-CSSEEEEEETTSCEEEEETT----------TCCEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred CCcEeEEe-cCCCCceEEEEE-CCCEEEEEeCCCeEEEEECC----------CCCEEEEEcCCcccEEEEEEe--CCEEE
Confidence 99998888 789999999999 33379999999999999998 455677788899999888875 56999
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeee--cCCcCceEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFL--EGHEKPVKSL 328 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~h~~~v~~~ 328 (357)
+|+.||.|++||+++++....+.....|...|.++++++++|++|+.||.|++||+.+++....+... .+|.+.|+++
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 413 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence 99999999999999887655444444588999999999999999999999999999998443333222 4788999999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCe----EEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGE----IKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~----v~~wd 357 (357)
+|+|++. ++++|+.||+ |.+||
T Consensus 414 ~~s~~~~-------~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 414 RASNTKL-------VCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EECSSEE-------EEEEECSSSSSCCEEEEEE
T ss_pred EecCCEE-------EEEEcccCCCCccEEEEEE
Confidence 9999987 9999999997 99986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=295.53 Aligned_cols=274 Identities=26% Similarity=0.414 Sum_probs=240.8
Q ss_pred ecccccCCCCCCCccc-eeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCe
Q 038568 16 CIASLKIPSPDPHHMI-ISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCK 93 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~-i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~ 93 (357)
..+.+++ |.+. +.|+.+++++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+++.+++++.||+
T Consensus 110 ~~~~l~~-----h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~~~dg~ 180 (445)
T 2ovr_B 110 SPKVLKG-----HDDHVITCLQFCGNRIVSGSDDNTLKVWSA-VTGKCLRTLVG---HTGGVWSSQMRDNIIISGSTDRT 180 (445)
T ss_dssp CCEEEEC-----STTSCEEEEEEETTEEEEEETTSCEEEEET-TTCCEEEECCC---CSSCEEEEEEETTEEEEEETTSC
T ss_pred eeEEecc-----cCCCcEEEEEEcCCEEEEEECCCcEEEEEC-CCCcEEEEEcC---CCCCEEEEEecCCEEEEEeCCCe
Confidence 3445554 8886 57888889999999999 9999999 88999999988 99999999999888999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcch
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 173 (357)
|++||+.+++....+. +|...|.++.++++.+++|+.||.|++||+++++
T Consensus 181 i~vwd~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 181 LKVWNAETGECIHTLY------------------------------GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp EEEEETTTTEEEEEEC------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred EEEEECCcCcEEEEEC------------------------------CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999886543332 7889999999999999999999999999999999
Q ss_pred hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
.+..+ ..|...+.++.+ ....+++++.||.|++||++ ....+..+.+|...|.+++| ++.++++++
T Consensus 231 ~~~~~-~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~----------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 231 CLHVL-MGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPE----------TETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp EEEEE-ECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGG----------GTEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred EEEEE-cCCcccEEEEEE-CCCEEEEEcCCCEEEEEECC----------CCcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence 88888 789999999999 33379999999999999998 45667778889999999999 788999999
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecC---CcCceEEEEE
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG---HEKPVKSLVA 330 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---h~~~v~~~~~ 330 (357)
.||.|++||+++++ ....+.+|...+.++.++++++++|+.||.|++||++++ +.+..+.+ |..+|++++|
T Consensus 297 ~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 297 LDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp TTSCEEEEETTTCC---EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEE
T ss_pred CCCeEEEEECCCCC---EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEE
Confidence 99999999999887 445667899999999999999999999999999999987 44555554 8899999999
Q ss_pred eeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++ + +|++|+.||.|++||
T Consensus 371 ~~--~-------~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 371 NK--N-------FVITSSDDGTVKLWD 388 (445)
T ss_dssp CS--S-------EEEEEETTSEEEEEE
T ss_pred CC--C-------EEEEEeCCCeEEEEE
Confidence 64 4 999999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=286.63 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=199.5
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceecc-ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSN-DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|...|.+++|+ .+.|++|+.| .|+|||+ ++++.+..+.. ..+|.+.|++++|+|++ |++|+.|++|++||+.++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~-~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWEL-DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEE-CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEec-cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 66789999999 7889999999 9999999 77766554331 11299999999999987 999999999999999988
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
+....+. +|...|.+++|++ .+|++++.|++|++||++++++...+.
T Consensus 160 ~~~~~~~------------------------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 160 VVLSSYR------------------------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp EEEEEEC------------------------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC
T ss_pred cEEEEEc------------------------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee
Confidence 6544332 8999999999998 578999999999999999998877663
Q ss_pred -ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecC
Q 038568 180 -KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCD 255 (357)
Q Consensus 180 -~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 255 (357)
..+...+.+++|+|++ +|++|+.||.|++||++ ..+++..+.+|...|++++|+|++ ++|++|+.|
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECC----------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 3455679999999965 58899999999999998 456677889999999999999987 589999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
++|++||+++++. ..+.+|...|.+++|+|+ +|++++.|++|++|++.+.
T Consensus 280 ~~i~vwd~~~~~~----~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 280 CSLAVLDSSLSEL----FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SCEEEECTTCCEE----EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CeEEEEECCCCcE----EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9999999987753 245789999999999875 6789999999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=305.23 Aligned_cols=276 Identities=24% Similarity=0.429 Sum_probs=240.8
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..+++..+.+ |...|++++|+ +++|++++.| .|++|+. + ++.+..+.+ |...|.+++|+|++ |++
T Consensus 251 ~~~~~~~~~~-----~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~-~~~~~~~~~---h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 251 NGQLLQTLTG-----HSSSVNGVAFRPDGQTIASASDDKTVKLWNR-N-GQLLQTLTG---HSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TSCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEET-T-SCEEEEECC---CSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEec-----CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-C-CcEEEEEec---CCCCeEEEEECCCCCEEEE
Confidence 3456666665 99999999999 8899999999 9999997 4 467778887 99999999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.|++|++||...... ..+ .+|...+.+++|+| .++++++.||.|+
T Consensus 321 ~~~d~~i~~w~~~~~~~-~~~------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHL-QTL------------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp EETTSCEEEEETTSCEE-EEE------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EeCCCeEEEEeCCCCee-EEE------------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 99999999999865432 111 27889999999999 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+||. +++.+..+ ..|...|.+++|+|++ +|++++.|+.|++||.. .+.+..+.+|...|++++|+|
T Consensus 370 ~~~~-~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~ 436 (577)
T 2ymu_A 370 LWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----------GQLLQTLTGHSSSVWGVAFSP 436 (577)
T ss_dssp EEET-TCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------CCEEEEEECCSSCEEEEEECT
T ss_pred EEcC-CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-----------CCEEEEecCCCCCeEEEEECC
Confidence 9995 56677777 7899999999999999 59999999999999964 345677889999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
++++|++++.|+.|++||... + ....+.+|...+.+++|+++ +|++++.|+.|++||.. + +++..+.+|.
T Consensus 437 d~~~l~~~~~d~~v~~w~~~~-~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~ 508 (577)
T 2ymu_A 437 DDQTIASASDDKTVKLWNRNG-Q---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHS 508 (577)
T ss_dssp TSSEEEEEETTSEEEEEETTS-C---EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCS
T ss_pred CCCEEEEEcCCCEEEEEECCC-C---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCCC
Confidence 999999999999999999753 3 44566789999999999877 99999999999999964 3 5677889999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|++++|+|+++ +|++++.||.|++||
T Consensus 509 ~~v~~l~~s~dg~-------~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 509 SSVRGVAFSPDGQ-------TIASASDDKTVKLWN 536 (577)
T ss_dssp SCEEEEEECTTSS-------CEEEEETTSEEEEEC
T ss_pred CCEEEEEEcCCCC-------EEEEEECcCEEEEEe
Confidence 9999999999998 999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=285.91 Aligned_cols=240 Identities=21% Similarity=0.288 Sum_probs=209.6
Q ss_pred ceeccccCCCCceEEEEEecC------ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHIT------KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
+.+++ |.+.|.+++|+|+ .|++|+.|++|++|++..++.... ..
T Consensus 26 ~~~~~---H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-~~-------------------------- 75 (321)
T 3ow8_A 26 KQEQA---HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-WS-------------------------- 75 (321)
T ss_dssp EETTS---SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-EE--------------------------
T ss_pred eeccc---CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-ee--------------------------
Confidence 34455 9999999999874 299999999999999976543211 11
Q ss_pred ccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccc
Q 038568 137 LWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 213 (357)
+.+|...|.+++|++ .++++++.|++|++||+.+++.+..+ ..+...+.+++|+|++ +|++++.|+.|++||++
T Consensus 76 -l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~- 152 (321)
T 3ow8_A 76 -LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE- 152 (321)
T ss_dssp -ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-
T ss_pred -eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-
Confidence 138999999999999 89999999999999999999988888 7788889999999999 69999999999999998
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L 291 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 291 (357)
.......+..|...|.+++|+|++++|++|+.||.|++||+++++ ....+.+|..+|.+++|+++ +
T Consensus 153 ---------~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~spd~~~ 220 (321)
T 3ow8_A 153 ---------SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLHTLEGHAMPIRSLTFSPDSQL 220 (321)
T ss_dssp ---------TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCCCEEEECTTSCE
T ss_pred ---------CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEEcccCCceeEEEEcCCCCE
Confidence 344556677888999999999999999999999999999999876 45567789999999999877 9
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++|+.|+.|++||++++ .....+.+|...|.+++|+|++. +|++++.||+|++||
T Consensus 221 l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~~~-------~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 221 LVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPDDT-------HFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred EEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECCCCC-------EEEEEeCCCcEEEEe
Confidence 999999999999999987 56778899999999999999998 999999999999997
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=298.54 Aligned_cols=298 Identities=14% Similarity=0.235 Sum_probs=229.3
Q ss_pred ccceecccc-cCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC---cc---ccceeccccCCCCceEEEEE
Q 038568 12 FKHHCIASL-KIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD---YS---HVDTFSNDLSSSGSVKSITF 80 (357)
Q Consensus 12 ~~~~~~~~~-~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~---~~---~~~~~~~~~~~~~~v~~l~~ 80 (357)
+.++++..+ ++ |.+.|++++|+ +++||+|+.| .|+|||+ .+ +. ....+ . |...|.+++|
T Consensus 50 ~~g~~~~~~~~~-----h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~-~---h~~~v~~~~~ 119 (437)
T 3gre_A 50 LRGKLIATLMEN-----EPNSITSSAVSPGETPYLITGSDQGVIKIWNL-KEIIVGEVYSSSLTY-D---CSSTVTQITM 119 (437)
T ss_dssp CCCCEEEEECTT-----TTSCEEEEEEECSSSCEEEEEETTSEEEEEEH-HHHHTTCCCSCSEEE-E---CSSCEEEEEE
T ss_pred ccceEEeeeccC-----CCCceEEEEECCCCCCEEEEecCCceEEEeEC-cccccCcccceeeec-c---CCCCEEEEEE
Confidence 456667777 64 99999999998 5799999999 9999999 55 32 12222 3 9999999999
Q ss_pred ecCc--eEEeecCCeEEEEecC---CccceeeeeecCccccceeeeecCCCeEEEeccccccccc--ccccEEEEEEe--
Q 038568 81 HITK--IFTAHQDCKIRVWKIT---ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE--HWDAVSDLVVK-- 151 (357)
Q Consensus 81 ~~~~--l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-- 151 (357)
+|++ |++++.||+|++||++ .++........ ... . ..+.. +...+.++.+.
T Consensus 120 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~i~---------~------~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 120 IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-----CIR---------K------INLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-----EEE---------E------EEGGGGSSCCCEEEEEEEEC
T ss_pred eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-----eeE---------E------EEccCcccccCceEEEEEEc
Confidence 9976 9999999999999995 33322211110 000 0 00011 56778888844
Q ss_pred c--CeEEEEecCCeEEEEEcCcchhhhhcccc--ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 152 Q--GLMYSVSWDRSFKIWNASNYKCLESVNKA--HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 152 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+ .++++++.||.|++||+++++++..+ .. |...|++++|+|++ +|++|+.||.|++||++ ....
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----------~~~~ 248 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR----------FNVL 248 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT----------TTEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC----------CccE
Confidence 4 79999999999999999999998888 45 88999999999998 59999999999999998 3455
Q ss_pred eeEee-ccccceeEEEEe----cCCCEEEEEecCCeEEEEecccCCceeeeee---------------------ccC--C
Q 038568 227 VTTLV-KHRSTVNALALN----GDGSLLFSGGCDRWIVVWERERDHRMVFAEA---------------------LWG--H 278 (357)
Q Consensus 227 ~~~~~-~~~~~v~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------~~~--~ 278 (357)
+..+. .|..+|.+++|+ |++.+|++|+.||.|++||+++++....+.. +.+ |
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 56554 678899999665 4677999999999999999997764433321 122 7
Q ss_pred ccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeee----------------------------------ecCCcC
Q 038568 279 TGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAF----------------------------------LEGHEK 323 (357)
Q Consensus 279 ~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~----------------------------------~~~h~~ 323 (357)
...|.+++|++. +|++|+.||.|++||+.+++....+.. ...|.+
T Consensus 329 ~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (437)
T 3gre_A 329 LNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD 408 (437)
T ss_dssp GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC
T ss_pred CCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc
Confidence 777888888855 899999999999999998754333221 123899
Q ss_pred ceEEEEEeeC--CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISS--SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~--~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++++|+++ .. +|++|+.||.|++|+
T Consensus 409 ~I~~i~~~~~~~~~-------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 409 IINSISTCEVDETP-------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEESSSSE-------EEEEEETTSCEEEEC
T ss_pred ceeeEeeeccCCce-------EEEEEcCCceEEEeC
Confidence 9999999998 54 999999999999996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=280.35 Aligned_cols=273 Identities=16% Similarity=0.269 Sum_probs=229.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc--CCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL--SSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|.+.|++++|+ +++|++++ | .|++||+ .+++....+.... .|...|.+++|+|++ |++++.|+.|++||+.
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDI-SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEET-TSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEEC-CCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 99999999999 88999998 8 9999999 6655433332111 289999999999987 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+++..... . +..|...|.+++|+| +++++++.||.|++||+++++.+..+
T Consensus 128 ~~~~~~~~-~---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 128 APTPRIKA-E---------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp CC--EEEE-E---------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCcceee-e---------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 77532211 1 127888999999999 79999999999999999999888888
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
..|...+.+++|+|++ .|++++.|+.|++||++ ..+....+ .+...+.+++|+|++++|++++.|+.
T Consensus 180 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~----------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 180 -QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -ecccCceEEEEECCCCCEEEEEecCCcEEEEECC----------CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence 7799999999999998 69999999999999998 23333333 46788999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|++||+++.+. ..+..|...+.++.|+++ +|++++.||.|++||+.+++ .+ ....|...|++++|+|+++
T Consensus 248 i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---~~-~~~~~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 248 VEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SI-FQSKESSSVLSCDISVDDK 319 (337)
T ss_dssp EEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EE-EEEECSSCEEEEEECTTSC
T ss_pred EEEEECCCCCe----EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---EE-EEecCCCcEEEEEECCCCC
Confidence 99999998753 245678999999999876 99999999999999999874 23 2345788999999999998
Q ss_pred CCCCCeEEEEEcCCCCeEEecC
Q 038568 336 SASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||
T Consensus 320 -------~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 320 -------YIVTGSGDKKATVYE 334 (337)
T ss_dssp -------EEEEEETTSCEEEEE
T ss_pred -------EEEEecCCCeEEEEE
Confidence 999999999999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=289.40 Aligned_cols=290 Identities=16% Similarity=0.235 Sum_probs=232.4
Q ss_pred CccceeEEEEe------cceEEEeeCC-ceEEEeccCCccccceecccc--CCCCceEEEEEecC----c--eEEeecCC
Q 038568 28 HHMIISCLAVH------NSLLYAASLN-EINVFDLISDYSHVDTFSNDL--SSSGSVKSITFHIT----K--IFTAHQDC 92 (357)
Q Consensus 28 h~~~i~~~~~s------~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~----~--l~~~~~d~ 92 (357)
|.++|++++|+ ...+++++.+ .|++||+ .+++.+..+.... .|...|++++|+|+ + |++++.||
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 99999999998 2345555556 9999999 7777776666422 26688999999998 3 99999999
Q ss_pred eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEc
Q 038568 93 KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 93 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~ 169 (357)
.|++||+.+++....+. +|...|.+++|+| .+|++++.||.|++||+
T Consensus 96 ~i~v~d~~~~~~~~~~~------------------------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 96 IIRIINPITMQCIKHYV------------------------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp EEEEECTTTCCEEEEEE------------------------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EEEEEEchhceEeeeec------------------------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 99999999876544432 7899999999997 78999999999999999
Q ss_pred Ccchhhhhcc--ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc------------------cceeeee
Q 038568 170 SNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK------------------SRHMLVT 228 (357)
Q Consensus 170 ~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~------------------~~~~~~~ 228 (357)
++++.+..+. ..|...|.+++|+|++ +|++++.||.|++||++......... .......
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 9988777652 4688999999999998 69999999999999998432111000 0011123
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc-----------eeeeeeccCCccceEEEeec----CceEE
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR-----------MVFAEALWGHTGALLCLINV----GDLLA 293 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~----~~~l~ 293 (357)
....|...|.+++|+ +++|++++.|+.|++||+++... ......+..|...+.+++|+ +.+|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 334589999999999 67999999999999999987643 12355667788888777766 55999
Q ss_pred EecCCCeEEEeeCCCCccee-eeeeecCC--cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYR-CMAFLEGH--EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~-~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+.||.|++||+.+++... ....+.+| ..+|++++|+|+++ +|++++.||.|++||
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-------ILIAVCDDASIWRWD 363 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-------eEEEEeCCCEEEEEE
Confidence 99999999999999875433 45567777 79999999999998 999999999999997
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=293.58 Aligned_cols=275 Identities=20% Similarity=0.326 Sum_probs=235.1
Q ss_pred ecccccCCCCCCCccc-eeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCC
Q 038568 16 CIASLKIPSPDPHHMI-ISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDC 92 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~-i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~ 92 (357)
....+++ |.+. +.++.+++++|++|+.| .|++||+ .+++.+..+.+ |.+.|.+++|+|++ |++++.||
T Consensus 113 ~~~~l~~-----h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~---h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 113 QRTTLRG-----HMTSVITCLQFEDNYVITGADDKMIRVYDS-INKKFLLQLSG---HDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEEEC-----CSSSCEEEEEEETTEEEEEETTSCEEEEET-TTTEEEEEECC---CSSCEEEEEECSTTEEEEEETTS
T ss_pred ceEEEcC-----CCCCcEEEEEECCCEEEEEcCCCcEEEEEC-CCCcEEEEEeC---CCcCEEEEEEcCCCEEEEEeCCC
Confidence 3445665 8877 57888889999999999 9999999 89999999998 99999999999987 99999999
Q ss_pred eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEE
Q 038568 93 KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 93 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd 168 (357)
+|++||+++++....+ .+|...|.+++|.+ .++++++.||.|++||
T Consensus 184 ~i~vwd~~~~~~~~~~------------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVF------------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp CEEEEETTTTEEEEEE------------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred CEEEEECCCCcEEEEE------------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 9999999987654333 27899999999984 7899999999999999
Q ss_pred cCcchhhh-----------------------hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 169 ASNYKCLE-----------------------SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 169 ~~~~~~~~-----------------------~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+++++... .+ .+|...+.++. +++ .+++++.|+.|++||++ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~----------~~ 300 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVA----------QM 300 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEEE--EETTEEEEEETTSCEEEEETT----------TT
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEEc--CCCCEEEEEeCCCeEEEEECC----------CC
Confidence 98765432 23 56777787774 444 79999999999999998 45
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIW 304 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 304 (357)
+.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++ ....+.+|...+.++.+++++|++++.||.|++|
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEE
Confidence 6677888999999999999999999999999999999999876 4556778999999999999999999999999999
Q ss_pred eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++. ..... .|...+..++|++++. +|++|+ ||.|++||
T Consensus 378 d~~~~~---~~~~~-~~~~~~~~~~~~~~~~-------~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 378 DANDYS---RKFSY-HHTNLSAITTFYVSDN-------ILVSGS-ENQFNIYN 418 (464)
T ss_dssp ETTTCC---EEEEE-ECTTCCCEEEEEECSS-------EEEEEE-TTEEEEEE
T ss_pred ECCCCc---eeeee-cCCCCccEEEEEeCCC-------EEEEec-CCeEEEEE
Confidence 999863 22222 3667788899999998 999988 99999997
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=290.32 Aligned_cols=273 Identities=16% Similarity=0.282 Sum_probs=225.7
Q ss_pred ceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee
Q 038568 31 IISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 31 ~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
.++.|+|+ +++||+|. | +|+|||. .+++..+.+... .|...|++|+|+|++ |++|+.||+|++||+.+++...
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSA-SSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEET-TTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEEC-CCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 46789999 88888876 6 9999999 888887766531 278899999999987 9999999999999999886554
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchh-hhhcccccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKC-LESVNKAHEDA 185 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 185 (357)
.+. +|...+.++.+++..+++|+.|+.+++||...... +..+ ..|...
T Consensus 184 ~~~------------------------------~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~-~~h~~~ 232 (420)
T 4gga_A 184 NMT------------------------------SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL-SGHSQE 232 (420)
T ss_dssp EEC------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSC
T ss_pred EEe------------------------------CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEe-cccccc
Confidence 332 88999999999999999999999999999887543 4445 789999
Q ss_pred EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEE--EecCCeEEEE
Q 038568 186 VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFS--GGCDRWIVVW 261 (357)
Q Consensus 186 v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~vw 261 (357)
+..+.++|++ ++++++.|+.+++|+.. ........+.....|...|.+++|+|.+. ++++ |+.|+.|++|
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~------~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSA------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESS------CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred eeeeeecCCCCeeeeeeccccceEEeec------cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 9999999998 69999999999999997 33334445667778999999999999654 5554 4579999999
Q ss_pred ecccCCceeeeeeccCCccceEEEeecCc--eEEE--ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 262 ERERDHRMVFAEALWGHTGALLCLINVGD--LLAS--GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
|+.++.... .+. +...+.++.|.++ .+++ |+.|+.|++||+.++ +++..+.+|.+.|++++|+|++.
T Consensus 307 d~~t~~~~~---~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~-- 377 (420)
T 4gga_A 307 NVCSGACLS---AVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGA-- 377 (420)
T ss_dssp ETTTTEEEE---EEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS--
T ss_pred eCCccccce---eec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCC--
Confidence 999887543 333 3345677777665 5544 447999999999987 67888999999999999999998
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+|||.||+|++||
T Consensus 378 -----~l~S~s~D~tvriWd 392 (420)
T 4gga_A 378 -----TVASAAADETLRLWR 392 (420)
T ss_dssp -----CEEEEETTTEEEEEC
T ss_pred -----EEEEEecCCeEEEEE
Confidence 999999999999997
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=286.70 Aligned_cols=277 Identities=12% Similarity=0.170 Sum_probs=225.0
Q ss_pred CccceeEEEEe--c-ceEEEeeC---C-ceEEEeccCCccccceec-cccCCCCceEEEEEecC---c--eEEeecCCeE
Q 038568 28 HHMIISCLAVH--N-SLLYAASL---N-EINVFDLISDYSHVDTFS-NDLSSSGSVKSITFHIT---K--IFTAHQDCKI 94 (357)
Q Consensus 28 h~~~i~~~~~s--~-~~l~t~~~---d-~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~---~--l~~~~~d~~i 94 (357)
|.+.|++++|+ + .++++|+. | .|++||+ .+++...... + |..+|.+++|+|+ + |++++.||.|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-QHGDLKLLREIE---KAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE-CSSSEEEEEEEE---ESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC-CCCcccceeeec---ccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 99999999999 5 45566765 8 9999999 7766544332 4 8999999999997 3 9999999999
Q ss_pred EEEecCCcc-ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE------ec--CeEEEEecCCeEE
Q 038568 95 RVWKITASR-QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV------KQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 95 ~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--~~l~~~~~dg~i~ 165 (357)
++||+.+++ ....+ .+|...|.++.| ++ ++|++++.||.|+
T Consensus 93 ~iwd~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSV------------------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EEECTTSCSSCSEEE------------------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred EEEeCCCCCccEEEE------------------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 999999876 33222 278899999966 45 6999999999999
Q ss_pred EEEcCcch-hhhhcccccc----ccEEEEE----EecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc
Q 038568 166 IWNASNYK-CLESVNKAHE----DAVNAVV----VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235 (357)
Q Consensus 166 iwd~~~~~-~~~~~~~~~~----~~v~~~~----~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (357)
+||+++++ .+..+ ..+. ..+.+++ |+|++ .+++++.|+.|++||++ .... .....|..
T Consensus 143 vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------~~~~-~~~~~~~~ 210 (357)
T 3i2n_A 143 VWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----------NMAL-RWETNIKN 210 (357)
T ss_dssp EECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----------TTEE-EEEEECSS
T ss_pred EEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----------cCce-eeecCCCC
Confidence 99999886 55555 3333 3888998 66777 69999999999999998 2222 33456889
Q ss_pred ceeEEEEec---CCCEEEEEecCCeEEEEecccCCceeeee--eccCCccceEEEeecCc---eEEEecCCCeEEEeeCC
Q 038568 236 TVNALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAE--ALWGHTGALLCLINVGD---LLASGSADRTVRIWQRG 307 (357)
Q Consensus 236 ~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~ 307 (357)
.|.+++|+| ++.+|++++.||.|++||+++.+...... .+.+|...|.+++|+++ +|++++.||.|++||++
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 999999999 89999999999999999998765433222 34489999999999886 79999999999999998
Q ss_pred CCcce----------------eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE-EcCCCCeEEecC
Q 038568 308 KENCY----------------RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG-SGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~-s~~~dg~v~~wd 357 (357)
++... +.+..+.+|..+|++++|+|+++ +|+ +++.||.|++||
T Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 291 YPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-------GLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-------TEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-------eEEEEecCCCcEEEEE
Confidence 65432 56778899999999999999998 777 899999999997
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=294.46 Aligned_cols=294 Identities=14% Similarity=0.141 Sum_probs=220.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|.++|++++|+ +++||+|+.| .|+|||+ .++ +.+..+.+ |...|.+++|+|++ |++++.|++|++||+.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQ-DGNGWKHARTFSD---HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEE-ETTEEEECCCBCC---CSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEc-cCCceEEEEEEec---CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 66799999999 8999999999 9999999 776 77888887 99999999999986 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh---h
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC---L 175 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~---~ 175 (357)
+++.......+ ..|...|.+++|+| ++|++++.|+.|++||+++++. .
T Consensus 86 ~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 86 PDGTWKQTLVL---------------------------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ---CCCCEEEC---------------------------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred CCCceeeeeEe---------------------------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 87622222221 27899999999999 8999999999999999998873 5
Q ss_pred hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc--------ccceeeeeEeeccccceeEEEEecCC
Q 038568 176 ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER--------KSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
..+...|...|.+++|+|++ +|++++.|+.|++||++........ .....+...+ .|...|.+++|+|++
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 66623389999999999998 6999999999999998632211100 0124455555 899999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCcee-eeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc-c-----------
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMV-FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN-C----------- 311 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~-~----------- 311 (357)
++|++++.||.|++||+++++... ....+.+|...+.+++|+++ +|++++.++.+ +|+..... .
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSK 296 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccc
Confidence 999999999999999999887521 25567789999999999876 88888777666 66654211 0
Q ss_pred ---------------eee---------e-------------eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 312 ---------------YRC---------M-------------AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 312 ---------------~~~---------~-------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
... + .....|.+.|+++.+.+... .....|+|||.||.|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~---~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP---GNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET---TEEEEEEEEETTSEEE
T ss_pred cccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC---CceEEEEeecCCCcEE
Confidence 000 0 01123999999999887653 1122599999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 374 iWd 376 (377)
T 3dwl_C 374 LWT 376 (377)
T ss_dssp EEC
T ss_pred Eec
Confidence 997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=298.76 Aligned_cols=279 Identities=16% Similarity=0.171 Sum_probs=233.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC----ccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD----YSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vw 97 (357)
|...|++++|+ +++|++|+.| .|++||+ .. .+.+..+.+ |...|.+++|+|+ . |++++.|+.|++|
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~-~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYST-NEANNAINSMARFSN---HSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECC-SSTTSCCCEEEECCC---SSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeec-ccccccccchhhccC---CccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 89999999999 8999999999 9999999 65 346777777 9999999999997 4 9999999999999
Q ss_pred ecCCcc------ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEE
Q 038568 98 KITASR------QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 98 d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd 168 (357)
|+.+++ ....+. ....|...|.+++|+| .++++++.||.|++||
T Consensus 142 d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPG---------------------------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp BTTTTSSCTTTCCCBCCC---------------------------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred ECCCCccccccccccccc---------------------------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 998775 211111 1127889999999998 6899999999999999
Q ss_pred cCcchhhhhccccc------cccEEEEEEecCC--eEEEEeCCC---eEEEEEccccccccccccceeeeeEee-ccccc
Q 038568 169 ASNYKCLESVNKAH------EDAVNAVVVSDNG--VVYTGSADG---RIRVWERSVVDHNKERKSRHMLVTTLV-KHRST 236 (357)
Q Consensus 169 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~--~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (357)
+++++.+..+ ..+ ...+.+++|+|++ .+++++.|+ .|++||++. ...+...+. +|...
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 195 LKAKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN---------ANTPLQTLNQGHQKG 264 (416)
T ss_dssp TTTTEEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS---------TTSCSBCCCSCCSSC
T ss_pred CCCCCcceEE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC---------CCCCcEEeecCccCc
Confidence 9998888777 444 7889999999987 589999998 999999982 123455566 79999
Q ss_pred eeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcce
Q 038568 237 VNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 237 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
|.+++|+| ++++|++++.||.|++||+++++ ....+.+|...+.+++|+++ +|++++.||.|++|++.+....
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc---cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 99999999 99999999999999999999886 44566689999999999874 8999999999999999876422
Q ss_pred eee--------------------------------eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCM--------------------------------AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~--------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
... .....|..++++++|+|+++ +|++++.||.|+|||
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------LVQITPDGKGVSITN 411 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------EECBCTTSSCBCCBC
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------EEEEeCCCCeEEEEE
Confidence 111 11122678889999999998 999999999999997
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=274.02 Aligned_cols=273 Identities=15% Similarity=0.245 Sum_probs=224.1
Q ss_pred eeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 32 ISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.++|+|| +++||+|. | +|+|||+ ++++.++.+... .|...|++++|+|++ |++|+.||+|++||+++++....
T Consensus 28 ~~~l~WS~~~~lAvg~-D~tV~iWd~-~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVAL-DNSVYLWSA-SSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEET-TTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCCEEEEEe-CCEEEEEEC-CCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 5789999 77888775 7 9999999 888888877532 288899999999987 99999999999999998875544
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
+. +|...+.++.+.+..+++++.++.+++|+.............|...+.
T Consensus 105 ~~------------------------------~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 105 MT------------------------------SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp EE------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ec------------------------------CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 33 788899999888899999999999999998876544333378999999
Q ss_pred EEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE---EEEEecCCeEEEEec
Q 038568 188 AVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL---LFSGGCDRWIVVWER 263 (357)
Q Consensus 188 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~dg~i~vwd~ 263 (357)
.+.+.+++ ++++++.|+.|++||++ ..............+...|.+++++|++.. +++++.++.|++||.
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSA------PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESS------CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred EEEEcCCCCEEEEEecCcceeEEECC------CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 99999998 69999999999999998 333344455666678889999999996653 346678999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCc--eEE--EecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCC
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGD--LLA--SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASN 339 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~--~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 339 (357)
+....... ..+...+..+.+.+. .++ +|+.|+.|++||++++ +++..+.+|.++|++++|+|+++
T Consensus 229 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~---- 297 (318)
T 4ggc_A 229 CSGACLSA----VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGA---- 297 (318)
T ss_dssp TTCCEEEE----EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS----
T ss_pred cccccccc----ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCC----
Confidence 87764322 235566777777665 443 4558999999999987 67888999999999999999998
Q ss_pred CeEEEEEcCCCCeEEecC
Q 038568 340 GIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 340 ~~~~l~s~~~dg~v~~wd 357 (357)
+|+|||.||+|+|||
T Consensus 298 ---~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 298 ---TVASAAADETLRLWR 312 (318)
T ss_dssp ---CEEEEETTTEEEEEC
T ss_pred ---EEEEEecCCeEEEEE
Confidence 999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=290.51 Aligned_cols=288 Identities=12% Similarity=0.129 Sum_probs=237.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.+.|++++|+ +++|++|+.| .|++||. +++.+..+.. |...|.+++|+|++ |++++.|+.|++||+.++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK--TGALLNVLNF---HRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET--TSCEEEEECC---CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCeeeeccC---CCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 68899999999 8999999999 9999995 5577788887 99999999999987 999999999999999887
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
+....+........... ..........+.+++|++ ..+++++.+|.|++||+++++.+..+ ..
T Consensus 182 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~-~~ 245 (425)
T 1r5m_A 182 TVMQHFELKETGGSSIN---------------AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKL-IG 245 (425)
T ss_dssp EEEEEECCC------------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEE-CC
T ss_pred cEEEEeeccccCcccee---------------eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeee-cc
Confidence 65544432111000000 000012223388999999 88999999999999999999888888 78
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
|...|.+++|+|++ .|++++.|+.|++||++ .......+..|...|.+++|+|++ ++++++.|+.|++
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGG----------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSS----------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECC----------CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 99999999999998 69999999999999998 345566677899999999999999 9999999999999
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc-----------------ceeeeeeecCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN-----------------CYRCMAFLEGH 321 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~-----------------~~~~~~~~~~h 321 (357)
||+++++ ....+..|...+.+++|+++ +|++++.||.|++||+.+++ ....+..+.+|
T Consensus 315 ~d~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 315 WSLKQNT---LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp EETTTTE---EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred EECCCCc---EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 9999876 34455678889999999876 99999999999999998762 11167888899
Q ss_pred cC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 322 EK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 322 ~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.. .|++++|+|+++ +|++++.||.|++||
T Consensus 392 ~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 392 QDNDYIFDLSWNCAGN-------KISVAYSLQEGSVVA 422 (425)
T ss_dssp TCCCCEEEEEECTTSS-------EEEEEESSSCCEEEE
T ss_pred ccCCceEEEEccCCCc-------eEEEEecCceEEEEe
Confidence 76 999999999998 999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=272.52 Aligned_cols=247 Identities=19% Similarity=0.284 Sum_probs=200.6
Q ss_pred eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 64 TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 64 ~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
.+.+ |...|++++|+|++ |++|+.|++|++||+..... ..+.. +.+|
T Consensus 4 ~~~~---h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~---------------------------l~gH 52 (297)
T 2pm7_B 4 IANA---HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT---------------------------LTGH 52 (297)
T ss_dssp ECCS---CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEE---------------------------ECCC
T ss_pred eccC---CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEE---------------------------Eccc
Confidence 3455 99999999999987 99999999999999975321 11111 2389
Q ss_pred cccEEEEEEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecC--C-eEEEEeCCCeEEEEEcc
Q 038568 142 WDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDN--G-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 142 ~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~~ 212 (357)
..+|.+++|++ ++|++|+.|++|++||+++++ .+..+ ..|...|.+++|+|+ + +|++++.|+.|++||++
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 99999999974 689999999999999998764 44445 678999999999997 5 69999999999999997
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecC-------------CCEEEEEecCCeEEEEecccCCce-eeeeeccCC
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-------------GSLLFSGGCDRWIVVWERERDHRM-VFAEALWGH 278 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~ 278 (357)
. .. ......+.+|...|.+++|+|+ +++|++|+.|+.|++||++++... .....+.+|
T Consensus 132 ~------~~--~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 132 E------NG--TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp S------SS--CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred C------CC--ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 2 11 1113456789999999999996 579999999999999999876532 244567899
Q ss_pred ccceEEEeecCc-----eEEEecCCCeEEEeeCCCCcceeeeeee--cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 279 TGALLCLINVGD-----LLASGSADRTVRIWQRGKENCYRCMAFL--EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 279 ~~~v~~~~~~~~-----~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
...|.+++|+|+ +|++++.|++|++||++++........+ ..|...|.+++|+|+++ +|++++.||
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~las~~~D~ 276 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALSGGDN 276 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------CEEEEETTS
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-------EEEEEcCCC
Confidence 999999999873 8999999999999999874311112222 57888999999999998 999999999
Q ss_pred eEEecC
Q 038568 352 EIKVWD 357 (357)
Q Consensus 352 ~v~~wd 357 (357)
.|++|+
T Consensus 277 ~v~lw~ 282 (297)
T 2pm7_B 277 KVTLWK 282 (297)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=276.84 Aligned_cols=241 Identities=18% Similarity=0.270 Sum_probs=209.0
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+...++.+ |.+.|.+++|+|++ |++++.||+|++||+.+++....+.
T Consensus 46 ~~~~~l~g---H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---------------------------- 94 (340)
T 1got_B 46 RTRRTLRG---HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP---------------------------- 94 (340)
T ss_dssp CEEEEECC---CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------------------
T ss_pred hhheeecC---CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee----------------------------
Confidence 44566777 99999999999987 9999999999999998876544332
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch----hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK----CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWER 211 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~ 211 (357)
.|...|.+++|+| +++++++.|+.|++||+.+.+ ....+ .+|...+.++.|++++.+++++.|+.|++||+
T Consensus 95 --~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~ 171 (340)
T 1got_B 95 --LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171 (340)
T ss_dssp --CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred --cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCcEEEEECCCcEEEEEC
Confidence 7888999999999 899999999999999998753 23344 67899999999999999999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD- 290 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 290 (357)
+ .......+.+|...|.+++|+|+++++++|+.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 172 ~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 172 E----------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---CRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp T----------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECTTS
T ss_pred C----------CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe---eEEEEcCCcCCEEEEEEcCCC
Confidence 8 455677888999999999999999999999999999999999876 44567789999999999876
Q ss_pred -eEEEecCCCeEEEeeCCCCcceeeeeeec--CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 -LLASGSADRTVRIWQRGKENCYRCMAFLE--GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.||.|++||+++++ .+..+. .+...|++++|+|+++ +|++|+.||.|++||
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~g~~d~~i~vwd 298 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFSKSGR-------LLLAGYDDFNCNVWD 298 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCc---EEEEEccCCcccceEEEEECCCCC-------EEEEECCCCeEEEEE
Confidence 99999999999999999873 333333 3445799999999998 999999999999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=282.29 Aligned_cols=271 Identities=17% Similarity=0.245 Sum_probs=227.4
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.+.+++|+++.+++++.| .|++||+ .+++....+.. .|...|.+++|+|++ |++++.||.|++||+.+++....
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~-~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNA-DSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEET-TTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeC-CCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE
Confidence 355677777778888888 9999999 88887776664 378999999999987 99999999999999988765443
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCc-chhhhhccccccccE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASN-YKCLESVNKAHEDAV 186 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v 186 (357)
+. +|...|.+++|+++.+++++.||.|++||++. ...+..+ ..|...|
T Consensus 172 ~~------------------------------~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v 220 (401)
T 4aez_A 172 MA------------------------------GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEV 220 (401)
T ss_dssp EC------------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCE
T ss_pred ec------------------------------CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE-cCCCCCe
Confidence 32 78899999999889999999999999999984 4555566 7899999
Q ss_pred EEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEEEe--cCCeEEEEe
Q 038568 187 NAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGG--CDRWIVVWE 262 (357)
Q Consensus 187 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd 262 (357)
.+++|+|++ .|++++.|+.|++||++ .......+..|...|.+++|+|++. ++++++ .|+.|++||
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~----------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDAR----------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT----------CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCC----------CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 999999998 69999999999999998 3456667778999999999999765 566654 799999999
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEE--ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLAS--GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
+++++....+ .+...+.+++|+++ ++++ |+.||.|++||+.+++ ......+.+|...|++++|+|++.
T Consensus 291 ~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~--- 362 (401)
T 4aez_A 291 AATGARVNTV----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPDGR--- 362 (401)
T ss_dssp TTTCCEEEEE----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTTSS---
T ss_pred CCCCCEEEEE----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCCCC---
Confidence 9988754333 25678999999876 7777 5589999999998863 234455778999999999999998
Q ss_pred CCeEEEEEcCCCCeEEecC
Q 038568 339 NGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 339 ~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||
T Consensus 363 ----~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 363 ----ILSTAASDENLKFWR 377 (401)
T ss_dssp ----EEEEECTTSEEEEEE
T ss_pred ----EEEEEeCCCcEEEEE
Confidence 999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=283.85 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=195.2
Q ss_pred EEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec------CCeEEEEecCCcc
Q 038568 34 CLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ------DCKIRVWKITASR 103 (357)
Q Consensus 34 ~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~------d~~i~vwd~~~~~ 103 (357)
.+.+. .++++.++.+ ....|++ ....+ .. |...|++++|+||+ |++++. |+.|++|+..++.
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~-p~~~p----~~---H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGR-PVTAP----AC---MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp -----------------------------------C---CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEEecCCCccccccCC-CCCCc----cc---ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 34444 4555666666 9999998 54322 34 99999999999998 888887 7789999887664
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcc---
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVN--- 179 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 179 (357)
....+.. ...+|...|.+++|+| +.+++++.||+|++||+.+++......
T Consensus 82 ~~~~~~~--------------------------~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~ 135 (357)
T 4g56_B 82 PNESLCT--------------------------AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAK 135 (357)
T ss_dssp -CGGGCS--------------------------EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEE
T ss_pred cceeEec--------------------------ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeecc
Confidence 3222111 1127888999999999 888899999999999999887654331
Q ss_pred ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCe
Q 038568 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRW 257 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~ 257 (357)
.+|...|.+++|+|++ +|++++.|+.|++||++ ..+.+..+.+|...|++++|+|++. ++++++.||.
T Consensus 136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~----------~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS----------QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----------TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC----------CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 3688999999999998 69999999999999998 4567778889999999999999875 7899999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
|++||+++++..... ....|...+.+++|+|+ +|++|+.|+.|++||++++ +.+..+.+|...|++++|+|++
T Consensus 206 v~~wd~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 206 ILLWDTRKPKPATRI-DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp EEECCTTSSSCBCBC-CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEEEEEECSSS
T ss_pred eEEEECCCCceeeee-eeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEEEEEEcCCC
Confidence 999999987754322 34457788999999865 8999999999999999987 5677888999999999999987
Q ss_pred CCCCCCeEEEEEcCCCCeEEecC
Q 038568 335 SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. .+|++|+.||+|+|||
T Consensus 282 ~------~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 282 S------PFLASISEDCTVAVLD 298 (357)
T ss_dssp S------CCEEEEETTSCEEEEC
T ss_pred C------CEEEEEeCCCEEEEEE
Confidence 4 2799999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=269.91 Aligned_cols=249 Identities=19% Similarity=0.255 Sum_probs=201.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEecC--c--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHIT--K--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~--~--l~~~~~d~~i~vwd 98 (357)
|.+.|++++|+ |++||+|+.| +|+|||+ +. .+.+.++.+ |.++|.+++|+++ + |++++.|++|++||
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~-~~~~~~~~~~l~g---H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEB-CSSCBCCCEEECC---CSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEec-CCCCcEEEEEEcc---ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 99999999999 9999999999 9999999 53 467788888 9999999999852 2 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKC 174 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~ 174 (357)
+++++.... .. +..|...|.+++|+| .+|++++.|+.|++||++++..
T Consensus 84 ~~~~~~~~~-~~---------------------------~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 84 EENGRWSQI-AV---------------------------HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp BSSSCBCCC-EE---------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred cCCCceEEE-EE---------------------------eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 987642111 11 127889999999998 4899999999999999987642
Q ss_pred --hhhccccccccEEEEEEecC-------------C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 175 --LESVNKAHEDAVNAVVVSDN-------------G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 175 --~~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
...+ ..|...|.+++|+|+ + +|++|+.|+.|++||++ ...........+.+|...|.
T Consensus 136 ~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~------~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 136 TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN------SDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp BCCEEE-ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE------TTTTEEEEEEEECCCSSCEE
T ss_pred eeeeee-ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc------CCCceEEEEEEecCCCCceE
Confidence 2334 688999999999996 2 69999999999999997 32223345667889999999
Q ss_pred EEEEecCC---CEEEEEecCCeEEEEecccCCceeeeeec--cCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc
Q 038568 239 ALALNGDG---SLLFSGGCDRWIVVWERERDHRMVFAEAL--WGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 239 ~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~ 311 (357)
+++|+|++ .+|++++.|++|++||+++.........+ ..|...+.+++|+++ +|++++.||.|++|+......
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~ 288 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCc
Confidence 99999984 79999999999999999865321111222 467888999999876 999999999999999875433
Q ss_pred eeee
Q 038568 312 YRCM 315 (357)
Q Consensus 312 ~~~~ 315 (357)
+.++
T Consensus 289 w~~~ 292 (297)
T 2pm7_B 289 WEPA 292 (297)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=290.23 Aligned_cols=276 Identities=13% Similarity=0.211 Sum_probs=228.9
Q ss_pred CccceeEEEEe--cc-eEEEe----------eCC-ceEEEeccCCcc---ccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 28 HHMIISCLAVH--NS-LLYAA----------SLN-EINVFDLISDYS---HVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s--~~-~l~t~----------~~d-~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+...|.+++|+ ++ +|++| +.| .|+|||+ .+++ .+..+. |...|.+++|+|++ |+++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~-~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSL-LAADSEKPIASLQ----VDSKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEES-SSGGGCSCSCCCC----CSSCEEEEEECSSSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEc-cCCCCCcEEEEEe----cCCceEEEEECCCCCeEEEE
Confidence 56789999999 55 89999 889 9999999 7665 334443 89999999999987 9999
Q ss_pred ecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeE
Q 038568 89 HQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSF 164 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 164 (357)
+.||.|++||+...... ..+..+ .+|...|.+++|+| .+|++++.||.|
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~---------------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARF---------------------------SNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEEC---------------------------CCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred ccCCeEEEeecccccccccchhhc---------------------------cCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 99999999999873211 122222 27899999999997 689999999999
Q ss_pred EEEEcCcch------hhhhc--cccccccEEEEEEecC-C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-
Q 038568 165 KIWNASNYK------CLESV--NKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH- 233 (357)
Q Consensus 165 ~iwd~~~~~------~~~~~--~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~- 233 (357)
++||+++++ ....+ ...|...|.+++|+|+ + .|++++.|+.|++||++ .......+..+
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----------~~~~~~~~~~~~ 208 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----------AKKEVIHLSYTS 208 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----------TTEEEEEECCCC
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----------CCCcceEEeccc
Confidence 999998876 22221 1568889999999998 4 69999999999999998 33445555554
Q ss_pred -----ccceeEEEEecCC-CEEEEEecCC---eEEEEecccCCceeeeeecc-CCccceEEEeecC-c--eEEEecCCCe
Q 038568 234 -----RSTVNALALNGDG-SLLFSGGCDR---WIVVWERERDHRMVFAEALW-GHTGALLCLINVG-D--LLASGSADRT 300 (357)
Q Consensus 234 -----~~~v~~~~~~~~~-~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~--~l~~~~~dg~ 300 (357)
...|.+++|+|++ .++++++.|+ .|++||+++... ....+. +|...+.+++|++ + +|++++.||.
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 7889999999987 6899999998 999999998643 344566 7999999999976 3 9999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC-CCCCCCeEEEEEcCCCCeEEecC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS-SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++||++++ +.+..+.+|...|++++|+|++ . +|++++.||.|++||
T Consensus 287 v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-------~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 287 VLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPD-------LFACASFDNKIEVQT 334 (416)
T ss_dssp EEEECSSSC---CEEEEEECSSSCCCCEEECTTCTT-------EEEECCSSSEEEEEE
T ss_pred EEEeeCCCC---ccceeecCCCCceEEEEECCCCCC-------EEEEEecCCcEEEEE
Confidence 999999987 6677888999999999999998 6 999999999999996
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=277.76 Aligned_cols=282 Identities=10% Similarity=0.069 Sum_probs=214.4
Q ss_pred ccceeEEEEe--cceEEEeeCC--------ceEEEeccCCcccc----------ceeccccCCCCceEEEEEecCceEEe
Q 038568 29 HMIISCLAVH--NSLLYAASLN--------EINVFDLISDYSHV----------DTFSNDLSSSGSVKSITFHITKIFTA 88 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d--------~i~iw~~~~~~~~~----------~~~~~~~~~~~~v~~l~~~~~~l~~~ 88 (357)
.-||+|++|+ +++|++|+.| .|++|++ +..... ..+.. |...|.++++.++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~-~~~~~~~~~~~~~~~~~~l~~---~~~~v~s~~~~~~~~~~g 89 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRV-DPTKDTEKEQFHILSEFALED---NDDSPTAIDASKGIILVG 89 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEE-CTTSSSHHHHEEEEEEEECCT---TSCCCCEEEEETTEEEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEE-cCCCcceeeeeeeeeEEEccC---CCCceEEEEeCCCEEEEE
Confidence 3589999999 8899998754 4999998 543221 12344 888999999987765554
Q ss_pred -----------ecCCeEEEEecCCccceeee-eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce
Q 038568 89 -----------HQDCKIRVWKITASRQHQLV-STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL 154 (357)
Q Consensus 89 -----------~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 154 (357)
+.|+.+++|++......... .... ......+...+.+++|+| ++
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVD----------------------FDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC----------------------SSCCCCTTCCEEEEEECTTSSC
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeec----------------------eeecCCcccCEEEEEEcCCCCE
Confidence 45778999988765432211 1110 001124556789999999 66
Q ss_pred EE--EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEee
Q 038568 155 MY--SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 155 l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
++ +++.|++|++||+++++++..+ .|...|.+++|+|++. +++++ ++.+++|+.. .. .........
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~------~~--~~~~~~~~~ 216 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTV------TG--SCIARKTDF 216 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETT------TC--CEEEEECCC
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccCCceEEecc-ceeEEEEEec------cC--cceeeeecC
Confidence 55 4557899999999999988887 5778899999999995 55655 5566677665 11 122233455
Q ss_pred ccccceeEEEEecCCCEEEEEecCC----eEEEEecccCCce-eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEe
Q 038568 232 KHRSTVNALALNGDGSLLFSGGCDR----WIVVWERERDHRM-VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIW 304 (357)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw 304 (357)
.|...|.+++|+|+++++++++.|+ .+++|++...... .....+.+|...|.+++|+|+ +||+|+.|++|+||
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 6888999999999999999999887 6888998765432 234566789999999999887 99999999999999
Q ss_pred eCCCCcceeeeee-ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 305 QRGKENCYRCMAF-LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 305 ~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++ +++.. +.+|..+|++++|+||++ +|+|||.|++|||||
T Consensus 297 d~~~~---~~~~~~~~gH~~~V~~v~fSpdg~-------~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 297 KLKDL---SMSKIFKQAHSFAITEVTISPDST-------YVASVSAANTIHIIK 340 (365)
T ss_dssp ETTTT---EEEEEETTSSSSCEEEEEECTTSC-------EEEEEETTSEEEEEE
T ss_pred ECCCC---cEEEEecCcccCCEEEEEECCCCC-------EEEEEeCCCeEEEEE
Confidence 99987 55665 579999999999999999 999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=276.36 Aligned_cols=255 Identities=23% Similarity=0.348 Sum_probs=203.1
Q ss_pred CccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 58 DYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 58 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.+.+..+.+ |.++|.+++|+|+.|++++.|++|++||+..+... ....+.
T Consensus 3 ~~~~~~~~~~---h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~-~~~~~~------------------------- 53 (330)
T 2hes_X 3 SINLIKSLKL---YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT-LIDVLD------------------------- 53 (330)
T ss_dssp CCEEEEEEEC---CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE-EEEEEC-------------------------
T ss_pred ccccceeecc---CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE-EEEEEe-------------------------
Confidence 3456777887 99999999999999999999999999999865321 111110
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-------hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEE
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-------KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIR 207 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~ 207 (357)
..+|...|.+++|+| ++|++++.|++|++||++.. +.+..+ .+|...|.+++|+|++ +|++++.|+.|+
T Consensus 54 ~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~ 132 (330)
T 2hes_X 54 ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVW 132 (330)
T ss_dssp TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEE
T ss_pred cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence 014899999999999 89999999999999998532 344455 7899999999999998 699999999999
Q ss_pred EEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 208 VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+||++ ......+.+..+.+|...|.+++|+|++++|++++.|+.|++||..++. ......+.+|...|.+++|
T Consensus 133 iwd~~------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 133 IWETD------ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp EEECC------TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEE
T ss_pred EEecc------CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEe
Confidence 99985 2222345667788999999999999999999999999999999987652 2245677899999999999
Q ss_pred cCc----eEEEecCCCeEEEeeCCCCc-----ceeeeeeecC-CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 288 VGD----LLASGSADRTVRIWQRGKEN-----CYRCMAFLEG-HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 288 ~~~----~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++ +|++|+.|++|++||++.+. ...+...+.+ |...|.+++|++++ +|++++.||.|++||
T Consensus 206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--------~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--------LIASVGADGVLAVYE 277 (330)
T ss_dssp CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--------CEEEEETTSCEEEEE
T ss_pred cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--------EEEEEeCCCEEEEEE
Confidence 875 79999999999999997542 1234445554 99999999999664 799999999999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=291.75 Aligned_cols=275 Identities=16% Similarity=0.184 Sum_probs=210.0
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccc--eeccccCCCCceEEEEEec-Cc--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVD--TFSNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vwd 98 (357)
|...|+||+|+ +++||+|+.| .|+|||+ .+++... .+.+ |.+.|++|+|+| ++ |++++.||+|++||
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~-~~~~~~~~~~~~g---H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIG---AGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECS-SCCSCCEEECCCS---SSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEEC-CCCCceeEEEccC---CCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 88999999998 6799999999 9999999 6655433 3445 999999999997 33 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
+++.... .+... ..+...+.+++|++ .+|++|+.||.|++||++. +.+.
T Consensus 194 ~~~~~~~-~~~~~---------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~ 244 (435)
T 4e54_B 194 FKGNILR-VFASS---------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELW 244 (435)
T ss_dssp TTSCEEE-EEECC---------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCC
T ss_pred ccCCcee-EEecc---------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeE
Confidence 9765322 22111 13455678899999 8999999999999999864 5666
Q ss_pred hccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec
Q 038568 177 SVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
.+ ..|...|.+++|+|++ .+++++.|+.|++||++.. ... .......+|...|++++|+|++++|++++.
T Consensus 245 ~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~------~~~-~~~~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 245 NL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV------RGK-ASFLYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp CS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC------CSS-SCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred EE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccc------ccc-ceEEEeeeccccccceeECCCCCeeEEEcC
Confidence 77 7899999999999987 4889999999999999832 111 122334578999999999999999999999
Q ss_pred CCeEEEEecccCCceeeeeeccCCcc------ceEEEeecCc--eEEEe------------cCCCeEEEeeCCCCcceee
Q 038568 255 DRWIVVWERERDHRMVFAEALWGHTG------ALLCLINVGD--LLASG------------SADRTVRIWQRGKENCYRC 314 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~--~l~~~------------~~dg~i~vw~~~~~~~~~~ 314 (357)
||.|++||+.++...... ..|.. .+....|+++ +++++ ..++.|++||..++ +.
T Consensus 317 D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~ 390 (435)
T 4e54_B 317 KSEIRVYSASQWDCPLGL---IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KM 390 (435)
T ss_dssp SSCEEEEESSSSSSEEEE---CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CE
T ss_pred CCEEEEEECCCCccceEE---ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cE
Confidence 999999999987643322 12211 1122233332 33333 34568999999988 44
Q ss_pred eee-ecCCcCceEEE-EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 MAF-LEGHEKPVKSL-VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ~~~-~~~h~~~v~~~-~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.. ..+|...|.++ +|+|++. +|++|+ |+.|+|||
T Consensus 391 ~~~l~~~~~~~v~s~~~fspdg~-------~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 391 MCQLYDPESSGISSLNEFNPMGD-------TLASAM-GYHILIWS 427 (435)
T ss_dssp EEEECCSSCCCCCCEEEECTTSS-------CEEEEC-SSEEEECC
T ss_pred EEEEeCCCCCcEEEEEEECCCCC-------EEEEEc-CCcEEEEE
Confidence 444 35788889988 6999998 898886 88999997
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=295.99 Aligned_cols=298 Identities=12% Similarity=0.030 Sum_probs=218.6
Q ss_pred cceecccccCCCCCCCccceeEEEEe--c---------ceEEE-------------------eeCC-ceEEEeccCCccc
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--N---------SLLYA-------------------ASLN-EINVFDLISDYSH 61 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~---------~~l~t-------------------~~~d-~i~iw~~~~~~~~ 61 (357)
..++..++. +.+.|.+|+|+ + ++||+ ++.| +|+||++ ++++.
T Consensus 123 ~~r~~~~~~------~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~-~~~~~ 195 (524)
T 2j04_B 123 GKRRGFIYN------VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKM-NTSTL 195 (524)
T ss_dssp CCSCEEEEE------CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEE-ETTTC
T ss_pred CCcceEEEE------CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEc-cCCCC
Confidence 344445555 67889999998 4 56666 4577 8999999 66554
Q ss_pred c----ceeccccCCCCceEEEEEecC--------ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE
Q 038568 62 V----DTFSNDLSSSGSVKSITFHIT--------KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129 (357)
Q Consensus 62 ~----~~~~~~~~~~~~v~~l~~~~~--------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
. ..+.. |.+.|.+++|+|+ .|++++.||+|++||+..++........
T Consensus 196 ~~~~~~~l~~---~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~------------------ 254 (524)
T 2j04_B 196 HCVKVQTIVH---SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM------------------ 254 (524)
T ss_dssp CEEEEEEEEE---CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC------------------
T ss_pred CceEEEEEEe---cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee------------------
Confidence 2 33555 7899999999986 2999999999999999866422100000
Q ss_pred EecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchh-hhhccccccccEEEE--EEecCC--eEEEEeCC
Q 038568 130 VRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKC-LESVNKAHEDAVNAV--VVSDNG--VVYTGSAD 203 (357)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~--~~~~~~--~l~~~~~d 203 (357)
.......+.+|...|++++|++ ..|++|+.||+|++||+++++. ...+ ..|...|.++ .++|++ .|++++.|
T Consensus 255 -~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~-~~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 255 -CEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYD-QVHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp -CCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEE-ECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred -ecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEe-ecccccEEEEEEEcCCCCCeEEEEeccC
Confidence 0000112347889999999998 8999999999999999997744 3345 7899999999 567876 58999999
Q ss_pred CeEEEEEccccccccccccceeeeeEeeccc--cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc
Q 038568 204 GRIRVWERSVVDHNKERKSRHMLVTTLVKHR--STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA 281 (357)
Q Consensus 204 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 281 (357)
++|++||++ ..+....+.+|. ..|.+++|+|+++.+++++.|++|++||++++... ..+.+|...
T Consensus 333 ~tvklWD~~----------~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~---~~l~gH~~~ 399 (524)
T 2j04_B 333 GYFYIFNPK----------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV---HPLVSRETT 399 (524)
T ss_dssp SEEEEECGG----------GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC---EEEEECSSC
T ss_pred CeEEEEECC----------CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc---eeeecCCCc
Confidence 999999998 222333344454 35889999999999999999999999999987643 345679999
Q ss_pred eEEEeecCc--eEEEecCCCeEEEeeCCCCc-----------------------------------------ceeeeeee
Q 038568 282 LLCLINVGD--LLASGSADRTVRIWQRGKEN-----------------------------------------CYRCMAFL 318 (357)
Q Consensus 282 v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~-----------------------------------------~~~~~~~~ 318 (357)
|.+++|+|+ +|++|+.||+|++||+.... ....+..+
T Consensus 400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l 479 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI 479 (524)
T ss_dssp EEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-----------
T ss_pred eEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeee
Confidence 999999987 89999999999999863210 01123445
Q ss_pred cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 319 EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|..+|.+++|+|+++ ....+++|+.||.||||+
T Consensus 480 ~gh~~~V~~Vafsp~~~----~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 480 DAHGINITCTKWNETSA----GGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --CCCSCCCEEECCSTT----TTTEEEEECTTSEEEEEE
T ss_pred cCCCceEEEEECCCCCC----ccHHHHhhccCceEEEEE
Confidence 67889999999999953 112899999999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=284.73 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=229.7
Q ss_pred CccceeEEEEe--cc-eEEEeeCC-ceEEEec----cCCcc-----ccceecccc-------CCCCceEEEEEecCc--e
Q 038568 28 HHMIISCLAVH--NS-LLYAASLN-EINVFDL----ISDYS-----HVDTFSNDL-------SSSGSVKSITFHITK--I 85 (357)
Q Consensus 28 h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~----~~~~~-----~~~~~~~~~-------~~~~~v~~l~~~~~~--l 85 (357)
|.+.|++++|+ ++ +||+|+.| .|++|++ ..... ....+.... .|...|++++|+|++ |
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 67999999999 77 99999999 9999998 32221 222232100 157799999999987 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
++++.||.|++|| .+++....+ ..|...|.+++|+| .+|++++.||.
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVL------------------------------NFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEE------------------------------CCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEeCCCeEEEEe-CCCCeeeec------------------------------cCCCccEEEEEECCCCCEEEEEecCCe
Confidence 9999999999999 334333222 27889999999999 78999999999
Q ss_pred EEEEEcCcchhhhhcccccccc---------------EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 164 FKIWNASNYKCLESVNKAHEDA---------------VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
|++||+.+++.+..+ ..+... +.++.|+|++.+++++.++.|++||++ ......
T Consensus 173 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~----------~~~~~~ 241 (425)
T 1r5m_A 173 TILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT----------EKTPTG 241 (425)
T ss_dssp EEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT----------CSSCSE
T ss_pred EEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC----------CCceee
Confidence 999999998888777 555555 899999999999999999999999998 345566
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRG 307 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~ 307 (357)
.+..|...|.+++|+|++++|++++.|+.|++||+++++. ...+.+|...+.++.|+++ ++++++.|+.|++||++
T Consensus 242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS---QNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC---SEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETT
T ss_pred eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc---ceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECC
Confidence 6778999999999999999999999999999999998764 3455678999999999887 99999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++ +.+..+..|..+|++++|+|+++ +|++++.||.|++||
T Consensus 319 ~~---~~~~~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 319 QN---TLLALSIVDGVPIFAGRISQDGQ-------KYAVAFMDGQVNVYD 358 (425)
T ss_dssp TT---EEEEEEECTTCCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred CC---cEeEecccCCccEEEEEEcCCCC-------EEEEEECCCeEEEEE
Confidence 87 66777888999999999999998 999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=276.09 Aligned_cols=254 Identities=22% Similarity=0.349 Sum_probs=210.5
Q ss_pred CccccceeccccCCCC-ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccc
Q 038568 58 DYSHVDTFSNDLSSSG-SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134 (357)
Q Consensus 58 ~~~~~~~~~~~~~~~~-~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (357)
..+.+.++.+ |.. .|.+++|+|++ |++|+.|++|++||+.+++........
T Consensus 4 ~~~~~~~~~~---h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~----------------------- 57 (345)
T 3fm0_A 4 SLVLLGRVPA---HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS----------------------- 57 (345)
T ss_dssp CEEEEEEECC---STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-----------------------
T ss_pred cEEEeeeecC---CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-----------------------
Confidence 3456677777 887 99999999987 999999999999999876432221111
Q ss_pred ccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEE
Q 038568 135 KRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209 (357)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~ 209 (357)
.+|...|.+++|+| ++|++|+.|+.+++||+.++. ++..+ .+|...|.+++|+|++ +|++++.|+.|++|
T Consensus 58 ----~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 58 ----EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132 (345)
T ss_dssp ----SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ----cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEE
Confidence 28999999999999 899999999999999987653 45666 7899999999999998 69999999999999
Q ss_pred EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
|++. . ........+..|...|.+++|+|++++|++++.|+.|++||.+++.. .....+.+|...|.+++|++
T Consensus 133 d~~~------~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-~~~~~~~~h~~~v~~l~~sp 204 (345)
T 3fm0_A 133 EVDE------E-DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-VCCATLEGHESTVWSLAFDP 204 (345)
T ss_dssp EECT------T-SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECT
T ss_pred ECCC------C-CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-EEEEEecCCCCceEEEEECC
Confidence 9872 1 12345667788999999999999999999999999999999986643 24456788999999999987
Q ss_pred c--eEEEecCCCeEEEeeCCCCc------------ceeeeeeecC-CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 290 D--LLASGSADRTVRIWQRGKEN------------CYRCMAFLEG-HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
+ +|++++.|++|++|+...+. ..+++..+.+ |...|.+++|+|++. .|++++.|+.|+
T Consensus 205 ~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------~l~s~~~d~~i~ 277 (345)
T 3fm0_A 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-------ALATACGDDAIR 277 (345)
T ss_dssp TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-------CEEEEETTSCEE
T ss_pred CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-------EEEEEeCCCeEE
Confidence 6 99999999999999974321 1234445555 889999999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 278 vw~ 280 (345)
T 3fm0_A 278 VFQ 280 (345)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=279.31 Aligned_cols=296 Identities=17% Similarity=0.239 Sum_probs=232.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccc----------cCCCCceEEEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSND----------LSSSGSVKSIT 79 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~----------~~~~~~v~~l~ 79 (357)
.+....+++ |.+.|++++|+ +++|++|+.| .|++||+ .+++....+... ..|...|.+++
T Consensus 33 ~~~~~~~~~-----h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 33 NKDRDVERI-----HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDL-ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp CTTEEECCC-----CSSCEEEEEECTTTCCEEEEEETTSCEEEEEC-CCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred Ccceeeeec-----cCCcEEEEEEecCCCCEEEEEcCCCeEEEEEC-CCCcccceEeccccccccccccccCCCcEEEEE
Confidence 344455554 99999999997 7899999999 9999999 776666555310 12999999999
Q ss_pred Eec-Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----
Q 038568 80 FHI-TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---- 152 (357)
Q Consensus 80 ~~~-~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 152 (357)
|+| +. |++++.||.|++||+.+++....+ .+...+.++.+.+
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-------------------------------NFEETVYSHHMSPVSTK 155 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-------------------------------ECSSCEEEEEECSSCSS
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccceec-------------------------------cCCCceeeeEeecCCCC
Confidence 999 44 999999999999999987654433 4567788999988
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccc------cccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKE------RKSR 223 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~------~~~~ 223 (357)
.++++++.||.|++||+++++.+..+ ..|...|.+++|+|++ .+++++.||.|++||++....... ....
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 38999999999999999999988888 7899999999999998 388999999999999973221000 0011
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc---CCccceEEEeec-CceEEEecCCC
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW---GHTGALLCLINV-GDLLASGSADR 299 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~l~~~~~dg 299 (357)
.........|...|.+++|+|++++|++++.||.|++||+++++......... ............ ...+++++.|+
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 11122235788999999999999999999999999999999876432221110 011111222222 33777888899
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++||+.++ +.+..+.+|...|++++|+|+++ +|++++.||.|++||
T Consensus 315 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 315 TIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQ-------ELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEEETTTC---CEEEEECCCSSCEEEEEEETTTT-------EEEEEETTSCEEEEE
T ss_pred EEEEEECcCC---cceeeeccCCCeEEEEEEcCCCC-------EEEEECCCCeEEEEe
Confidence 9999999987 67788899999999999999998 999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=285.81 Aligned_cols=271 Identities=17% Similarity=0.198 Sum_probs=221.7
Q ss_pred ccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 29 HMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
...+++++|+ +++|++++.| .|++||+ .+.+....+.. | ..+....|++++ |++++.||.|++||+.+++
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNT-IIRDGSKMLKR---A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEEC-CSEETTTTSCS---C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEe-cccceeeEEec---C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 3445688999 9999999999 9999999 88787777765 5 445555678776 9999999999999998765
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
....+ .+|...|.+++|+| ++|++++.|+.|++||+++++.+..+ ..
T Consensus 131 ~~~~~------------------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~ 179 (420)
T 3vl1_A 131 QREID------------------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IG 179 (420)
T ss_dssp EEEET------------------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-EC
T ss_pred eeeec------------------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cC
Confidence 43222 28999999999999 79999999999999999999998888 78
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec---c---------------------ccc
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK---H---------------------RST 236 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~---------------------~~~ 236 (357)
|...|.+++|+|++ +|++++.|+.|++||++. .+....+.. + ...
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGT----------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT----------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC----------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 99999999999998 699999999999999982 233333332 2 345
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCccee
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
+.+++|+|++++|++++.||.|++||+++++... .....|...+.+++|+++ +|++|+.||.|++||+++++ .
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~ 325 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--C 325 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--S
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--C
Confidence 5566678899999999999999999999877533 334468889999999887 89999999999999999874 2
Q ss_pred eeeeecC-CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 CMAFLEG-HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++..+.+ |..+|+++.+ +++. +|++++.||.|++||
T Consensus 326 ~~~~~~~~~~~~v~~~~~-~~~~-------~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 326 PVGEFLINEGTPINNVYF-AAGA-------LFVSSGFDTSIKLDI 362 (420)
T ss_dssp CSEEEEESTTSCEEEEEE-ETTE-------EEEEETTTEEEEEEE
T ss_pred chhhhhccCCCCceEEEe-CCCC-------EEEEecCCccEEEEe
Confidence 3455555 6778888855 5666 999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=280.25 Aligned_cols=289 Identities=14% Similarity=0.236 Sum_probs=226.1
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..+....+.. | ..+....|+ +++|++|+.| .|++||+ .+++....+.+ |...|++++|+|++ |++
T Consensus 87 ~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s 156 (420)
T 3vl1_A 87 IRDGSKMLKR-----A-DYTAVDTAKLQMRRFILGTTEGDIKVLDS-NFNLQREIDQA---HVSEITKLKFFPSGEALIS 156 (420)
T ss_dssp SEETTTTSCS-----C-CEEEEEEECSSSCEEEEEETTSCEEEECT-TSCEEEEETTS---SSSCEEEEEECTTSSEEEE
T ss_pred ccceeeEEec-----C-CceEEEEEecCCCEEEEEECCCCEEEEeC-CCcceeeeccc---ccCccEEEEECCCCCEEEE
Confidence 3444455553 4 444444566 8999999999 9999999 88888888777 99999999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.|+.|++||+.+++....+. +|...|.+++|+| .+|++++.||.|+
T Consensus 157 ~s~d~~i~iwd~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 157 SSQDMQLKIWSVKDGSNPRTLI------------------------------GHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp EETTSEEEEEETTTCCCCEEEE------------------------------CCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred EeCCCeEEEEeCCCCcCceEEc------------------------------CCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999876554432 7899999999999 8899999999999
Q ss_pred EEEcCcchhhhhccc--cccccEEEEE---------------------EecCC-eEEEEeCCCeEEEEEccccccccccc
Q 038568 166 IWNASNYKCLESVNK--AHEDAVNAVV---------------------VSDNG-VVYTGSADGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 166 iwd~~~~~~~~~~~~--~~~~~v~~~~---------------------~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 221 (357)
+||+++++.+..+.. .+...+.+++ |+|++ .|++++.||.|++||++
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--------- 277 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--------- 277 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---------
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---------
Confidence 999999888777621 2444455544 56778 59999999999999998
Q ss_pred cceeeee-EeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCc-eEEEecC
Q 038568 222 SRHMLVT-TLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD-LLASGSA 297 (357)
Q Consensus 222 ~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~~~~ 297 (357)
...... ....|...|.+++|+|+++ +|++|+.||.|++||+++++.. ...+.. |...+.++.+.+. +|++++.
T Consensus 278 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 278 -SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINEGTPINNVYFAAGALFVSSGF 354 (420)
T ss_dssp -TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEESTTSCEEEEEEETTEEEEEETT
T ss_pred -CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccCCCCceEEEeCCCCEEEEecC
Confidence 222333 3346888999999999998 9999999999999999987542 233333 6777888877644 9999999
Q ss_pred CCeEEEeeCCCCccee------eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 298 DRTVRIWQRGKENCYR------CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||.|++|++..+...+ ....+.+|.+.|.+++|+|++. .++ .+++.+.+|.+.+|+
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~~g-~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE---SNG-EVLEVGKNNFCALYN 416 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS---SSC-EEEEEETTTEEEEEE
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC---Ccc-eEEEEcCCceEEEEe
Confidence 9999999998743222 2234567889999999999875 112 355666789999995
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=273.75 Aligned_cols=244 Identities=19% Similarity=0.279 Sum_probs=198.1
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|.+.|++++|+|++ |++|+.|++|++||+.+++.. .+.. +.+|...|.++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~---------------------------l~gH~~~V~~v 63 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIAD---------------------------LRGHEGPVWQV 63 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEE---------------------------EECCSSCEEEE
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEE---------------------------EcCCCccEEEE
Confidence 99999999999987 999999999999999876421 1111 23899999999
Q ss_pred EEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecC--C-eEEEEeCCCeEEEEEccccccccc
Q 038568 149 VVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDN--G-VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 149 ~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
+|++ ++|++|+.|++|++||+++++ .+..+ ..|...|.+++|+|+ + .|++|+.|+.|++||++.
T Consensus 64 ~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~------ 136 (316)
T 3bg1_A 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG------ 136 (316)
T ss_dssp EECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS------
T ss_pred EeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC------
Confidence 9974 789999999999999998864 44455 679999999999997 5 599999999999999872
Q ss_pred cccceeeeeEeeccccceeEEEEecC-----------------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccce
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGD-----------------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL 282 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 282 (357)
.. .......+.+|...|.+++|+|+ +++|++|+.|+.|++||++..........+.+|...|
T Consensus 137 ~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V 215 (316)
T 3bg1_A 137 EG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV 215 (316)
T ss_dssp SS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE
T ss_pred CC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce
Confidence 11 12233455678899999999997 4789999999999999997654444566788999999
Q ss_pred EEEeecCc------eEEEecCCCeEEEeeCCCCcce-eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 283 LCLINVGD------LLASGSADRTVRIWQRGKENCY-RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 283 ~~~~~~~~------~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+++|+|+ +|++++.|++|++|++++.... .....+..|...|.+++|+|+++ +|++++.||.|++
T Consensus 216 ~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-------~las~~~D~~v~l 288 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-------ILAVSGGDNKVTL 288 (316)
T ss_dssp EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-------CEEEEESSSCEEE
T ss_pred EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-------EEEEEcCCCeEEE
Confidence 99999874 7999999999999999863111 12234467889999999999998 9999999999999
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
|+
T Consensus 289 w~ 290 (316)
T 3bg1_A 289 WK 290 (316)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=269.14 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=224.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc---ccceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS---HVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd 98 (357)
|.+.|++++|+ +++|++++.| .|++|++ .+++ ....+.. |...|.+++|+|+ .|++++.||.|++||
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~-~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKF-DIQAKNVDLLQSLR---YKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEE-ETTTTEEEEEEEEE---CSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEe-CCCCccccceeeee---cCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 99999999999 8999999999 9999999 6655 2344445 9999999999976 499999999999999
Q ss_pred c-CCccceeeeeecCccccceeeeecCCCeEEEeccccccccc--ccccEEEEEEec-CeEEEEecCCeEEEEEcCc---
Q 038568 99 I-TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE--HWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASN--- 171 (357)
Q Consensus 99 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~--- 171 (357)
+ .+++. ..+ .+ |...|.+++|+| +++++++.|+.|++||+++
T Consensus 86 ~~~~~~~-~~~------------------------------~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 86 LIGSPSF-QAL------------------------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp SSSSSSE-EEC------------------------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred eccCCce-Eec------------------------------cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence 9 76643 111 16 899999999998 9999999999999999998
Q ss_pred ------chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-
Q 038568 172 ------YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG- 244 (357)
Q Consensus 172 ------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 244 (357)
++++..+ .+...+.+++|+|++ +++++.|+.|++||++.. .. .........|...+.+++|+|
T Consensus 135 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~-----~~--~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 135 GVIAVKNLNSNNT--KVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLC-----ED--DNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp BCEEEEESCSSSS--SSCCCEEEEEECSSE-EEEEESTTEEEEEESSCC-----TT--CCCEEEECSCSSCEEEEEECSG
T ss_pred ccccccCCeeeEE--eeCCceEEEEecCCc-EEEEeCCCeEEEEECCcc-----cc--ccceeeecCCCCceeEEEECCC
Confidence 8878877 388999999999987 999999999999999820 11 122334456788999999999
Q ss_pred CCCEEEEEecCCeEEEEecccC------CceeeeeeccCCc---------cceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 245 DGSLLFSGGCDRWIVVWERERD------HRMVFAEALWGHT---------GALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~---------~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
+++++++++.||.|++|+++.. +. ...+..|. ..|.+++|+++ +|++++.||.|++||+.
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSK---RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTT---CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCEEEEEecCCcEEEEEEcCCCccccccc---ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 9999999999999999999876 32 33444554 48999999876 89999999999999999
Q ss_pred CCcceeeeeeecCC-cCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 308 KENCYRCMAFLEGH-EKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 308 ~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
++ +.+..+.+| ..+|++++ |++. +|++++.||.
T Consensus 282 ~~---~~~~~~~~~h~~~v~~~~--~~~~-------~l~s~s~Dg~ 315 (342)
T 1yfq_A 282 TR---KKIKNFAKFNEDSVVKIA--CSDN-------ILCLATSDDT 315 (342)
T ss_dssp TT---EEEEECCCCSSSEEEEEE--ECSS-------EEEEEEECTH
T ss_pred cH---hHhhhhhcccCCCceEec--CCCC-------eEEEEecCCc
Confidence 87 667788888 99999999 9988 9999999998
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=278.93 Aligned_cols=252 Identities=22% Similarity=0.342 Sum_probs=211.5
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
.+..|+. .+....+++.+ |.+.|++++|+|++ |++|+.|++|++||+.+++....+.
T Consensus 47 ~~~~~~~-~~~~~~~~l~g---H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------- 105 (380)
T 3iz6_a 47 TAVSFNP-TDLVCCRTLQG---HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK----------------- 105 (380)
T ss_dssp GCCCCCC-CCCEEEEEECC---CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----------------
T ss_pred ccccccc-ceeEEeecccc---cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-----------------
Confidence 6677888 77788888998 99999999999987 9999999999999998876544332
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-------hhhhccccccccEEEEEEecCC--
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-------CLESVNKAHEDAVNAVVVSDNG-- 195 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-- 195 (357)
.|...|.+++|+| ++|++|+.|+.+++||+.+.. ....+ .+|...+.++.|.|++
T Consensus 106 -------------~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~ 171 (380)
T 3iz6_a 106 -------------LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQET 171 (380)
T ss_dssp -------------CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSS
T ss_pred -------------cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCC
Confidence 7888999999999 899999999999999987532 23334 7899999999999975
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEe-----eccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCce
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-----VKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
+|++|+.|+.|++||++ ....+..+ .+|...|.+++|++ ++++|++|+.|+.|++||++....
T Consensus 172 ~l~s~s~D~~i~~wd~~----------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~- 240 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVT----------TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR- 240 (380)
T ss_dssp CEEEECTTSCEEEECTT----------TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-
T ss_pred EEEEECCCCcEEEEEcC----------CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-
Confidence 59999999999999998 22333333 57889999999987 889999999999999999985432
Q ss_pred eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCC-------cCceEEEEEeeCCCCCCCC
Q 038568 270 VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGH-------EKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~ 340 (357)
....+.+|...|.+++|+|+ +|++|+.||+|++||++++ +.+..+..+ ...|++++|+|+++
T Consensus 241 -~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----- 311 (380)
T 3iz6_a 241 -AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDRNDNELPIVTSVAFSISGR----- 311 (380)
T ss_dssp -CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSSSCCSSCSCSEEEECSSSS-----
T ss_pred -ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccccccccccCceEEEEECCCCC-----
Confidence 44567789999999999876 9999999999999999987 344444332 23589999999999
Q ss_pred eEEEEEcCCCCeEEecC
Q 038568 341 IVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.||.|++||
T Consensus 312 --~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 312 --LLFAGYSNGDCYVWD 326 (380)
T ss_dssp --EEEEECTTSCEEEEE
T ss_pred --EEEEEECCCCEEEEE
Confidence 999999999999997
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=270.35 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=199.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecC--c--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHIT--K--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~--~--l~~~~~d~~i~vwd 98 (357)
|.+.|++++|+ |++||+|+.| +|+|||+ .+++ .+..+.+ |.++|.+++|+++ + |++++.|++|++||
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~-~~~~~~~~~~l~g---H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDV-RNGGQILIADLRG---HEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEE-ETTEEEEEEEEEC---CSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEe-cCCCcEEEEEEcC---CCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 99999999999 9999999999 9999999 6543 4667887 9999999999752 2 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKC 174 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~ 174 (357)
+++++.... ..+ .+|...|.+++|+| .+|++|+.|+.|++||++.+..
T Consensus 88 ~~~~~~~~~-~~~---------------------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 88 EENGTWEKS-HEH---------------------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp CSSSCCCEE-EEE---------------------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred CCCCcceEE-EEc---------------------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 987642211 111 27899999999998 4899999999999999987532
Q ss_pred ---hhhccccccccEEEEEEecC------------------CeEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 175 ---LESVNKAHEDAVNAVVVSDN------------------GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 175 ---~~~~~~~~~~~v~~~~~~~~------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
...+ ..|...+.+++|+|+ .+|++|+.|+.|++||++. . ........+.+|
T Consensus 140 ~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~------~-~~~~~~~~l~~h 211 (316)
T 3bg1_A 140 WEVKKIN-NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE------D-GQWKEEQKLEAH 211 (316)
T ss_dssp EEECCBT-TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT------T-SCEEEEECCBCC
T ss_pred cceeeee-ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC------C-CccceeeecccC
Confidence 3334 678889999999987 2699999999999999861 1 112456677899
Q ss_pred ccceeEEEEecCC----CEEEEEecCCeEEEEecccCCc-eeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 234 RSTVNALALNGDG----SLLFSGGCDRWIVVWERERDHR-MVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 234 ~~~v~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
...|.+++|+|++ ++|++++.|++|++||+++... ......+..|...|.+++|+|+ +|++++.|+.|++|+.
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 9999999999986 7999999999999999986321 0112233468889999999876 9999999999999998
Q ss_pred CCCcceeeeeeecCC
Q 038568 307 GKENCYRCMAFLEGH 321 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h 321 (357)
.....+.++..+...
T Consensus 292 ~~~g~~~~~~~~~~~ 306 (316)
T 3bg1_A 292 SVDGQWVCISDVNKG 306 (316)
T ss_dssp CTTSCEEEEEECC--
T ss_pred CCCCcEEEeeeccCC
Confidence 754334555544433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=268.25 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=227.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|.+++|+ |++++++..+ .+.+|......+.+..+ + |...|++++|+|++ |++++ ||.|++||+.++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-N---HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-C---CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceec-c---CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence 67899999999 8999988877 77777762333333333 4 99999999999987 77777 999999999877
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch--hhhhc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK--CLESV 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~ 178 (357)
+....+..+. ...|...|.+++|+| +++++++.||.|++||+++++ ....+
T Consensus 83 ~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 83 GNKSPVSQLD-------------------------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp TCCSCSEEEE-------------------------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred Cceeeeeccc-------------------------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 6443332211 016788999999999 789999999999999999877 44445
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
..|...+.+++|+|++ .+++++.|+.|++||++ ..+....+..|...+.+++|+|++++|++++.||.
T Consensus 138 -~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 138 -TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----------NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp -ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC----------CCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 6788899999999998 69999999999999998 44566777889999999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|++||+++++..... .+...+.+++|+++ +|++++.|+.|++||+++++ ...+..|..+|++++|+|+++
T Consensus 207 i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 207 VRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCCceEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCC
Confidence 999999987644332 36778899998876 99999999999999999863 345678999999999999998
Q ss_pred CCCCCeEEEEEcCCCCeEEecC
Q 038568 336 SASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||
T Consensus 279 -------~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 279 -------WFVSTGKDNLLNAWR 293 (337)
T ss_dssp -------EEEEEETTSEEEEEE
T ss_pred -------EEEEecCCCcEEEEE
Confidence 999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=265.17 Aligned_cols=242 Identities=22% Similarity=0.400 Sum_probs=204.8
Q ss_pred ccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCcccee--eeeecCccccceeeeecCCCeEEEecc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQ--LVSTLPTVKDRLIRSVLPNNYVTVRRH 133 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (357)
.....++.+ |.+.|++++|+|+. |++|+.|++|++|++....... .+
T Consensus 7 ~~l~~~l~g---H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~------------------------- 58 (319)
T 3frx_A 7 LVLRGTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV------------------------- 58 (319)
T ss_dssp EEEEEEECC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE-------------------------
T ss_pred EEEEEEEcc---ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc-------------------------
Confidence 344567777 99999999999853 9999999999999987543211 11
Q ss_pred cccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEE
Q 038568 134 KKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWE 210 (357)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d 210 (357)
..+.+|...|.+++|++ .+|++++.|++|++||+++++.+..+ .+|...|.+++|+|++ .|++++.|+.|++||
T Consensus 59 --~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 59 --RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred --eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 12338999999999999 89999999999999999999998888 8999999999999998 699999999999999
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecC------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 284 (357)
++ ...+..+.+|...|.++.|.|. +..+++++.|+.|++||+++.+ ....+.+|...|.+
T Consensus 136 ~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~h~~~v~~ 201 (319)
T 3frx_A 136 IK-----------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---IEADFIGHNSNINT 201 (319)
T ss_dssp TT-----------SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---EEEEECCCCSCEEE
T ss_pred CC-----------CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---hheeecCCCCcEEE
Confidence 86 3456677889999999999984 4489999999999999998765 44567789999999
Q ss_pred EeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 285 LINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 285 ~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|+|+ +|++++.||.|++||+.++ +.+..+.. ..+|.+++|+|++. +|++++.+ .+++|+
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~~v~~~~~sp~~~-------~la~~~~~-~i~v~~ 264 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QDEVFSLAFSPNRY-------WLAAATAT-GIKVFS 264 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CSCEEEEEECSSSS-------EEEEEETT-EEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CCcEEEEEEcCCCC-------EEEEEcCC-CcEEEE
Confidence 999877 9999999999999999987 55566654 46899999999998 88887754 588884
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=266.46 Aligned_cols=241 Identities=22% Similarity=0.300 Sum_probs=205.6
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+...++.+ |...|++++|+|++ |++|+.||+|++||..+++....+.
T Consensus 55 ~~~~~l~g---H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------------- 103 (354)
T 2pbi_B 55 KTRRTLKG---HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---------------------------- 103 (354)
T ss_dssp CEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------------
T ss_pred EEEEEecC---CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe----------------------------
Confidence 44567777 99999999999987 9999999999999998776544332
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc------hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEE
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY------KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRV 208 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i 208 (357)
.|...|.+++|+| .++++++.|+.+++|++... .....+ ..|...|.+++|+|++ .|++++.|++|++
T Consensus 104 --~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 104 --MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp --CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred --cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 6678899999999 89999999999999998653 223334 6789999999999998 6999999999999
Q ss_pred EEccccccccccccceeeeeEeeccccceeEEEEec--CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEe
Q 038568 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG--DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
||++ ..+.+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++ ....+.+|...|.+++
T Consensus 181 wd~~----------~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~---~~~~~~~h~~~v~~v~ 247 (354)
T 2pbi_B 181 WDVE----------SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---CVQAFETHESDVNSVR 247 (354)
T ss_dssp EETT----------TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEE
T ss_pred EeCC----------CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc---EEEEecCCCCCeEEEE
Confidence 9998 4567778889999999999988 56899999999999999999887 4456678999999999
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec--CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE--GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+|+ +|++|+.|++|++||++++ +.+..+. .+...+++++|+|++. +|++|+.|+.|++||
T Consensus 248 ~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~-------~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 248 YYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGR-------LLFAGYNDYTINVWD 312 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCCCC-------EEEEEECCCcEEEEE
Confidence 9876 9999999999999999986 3333333 3345789999999998 999999999999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=269.35 Aligned_cols=284 Identities=14% Similarity=0.185 Sum_probs=226.4
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-c----ceEEEeeCC-ceEEEeccCC-cccc-ceeccccCCCCceEEEEEecC
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-N----SLLYAASLN-EINVFDLISD-YSHV-DTFSNDLSSSGSVKSITFHIT 83 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-~----~~l~t~~~d-~i~iw~~~~~-~~~~-~~~~~~~~~~~~v~~l~~~~~ 83 (357)
.+.+.++.+++ |.+.|++++|+ . ++|++|+.| .|++||+ ++ +..+ ..+.+ |...|++++|+|+
T Consensus 27 ~~~~~~~~~~~-----h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~---h~~~v~~~~~~~~ 97 (368)
T 3mmy_A 27 NPMKDIEVTSS-----PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQTIPKAQQM---HTGPVLDVCWSDD 97 (368)
T ss_dssp CTTCCEECSSC-----CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEE-CTTSCEEEEEEEE---CSSCEEEEEECTT
T ss_pred CCcceeEeccC-----CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEc-CCCCceeEEEecc---ccCCEEEEEECcC
Confidence 34455555554 99999999999 3 899999999 9999999 65 4444 67777 9999999999998
Q ss_pred c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE--ec--CeEEE
Q 038568 84 K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV--KQ--GLMYS 157 (357)
Q Consensus 84 ~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~~ 157 (357)
+ |++++.||.|++||+.+++..... .|...|.+++| ++ .+|++
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSNQAIQIA-------------------------------QHDAPVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------ECSSCEEEEEEEECSSCEEEEE
T ss_pred CCEEEEEcCCCcEEEEEcCCCCceeec-------------------------------cccCceEEEEEEeCCCCCEEEE
Confidence 6 999999999999999987644321 78899999999 66 67999
Q ss_pred EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
++.||.|++||+++++.+..+ . ....+.++.+.++ .+++++.++.+++|+++ .... ........+...+
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~------~~~~--~~~~~~~~~~~~~ 215 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVL-Q-LPERCYCADVIYP-MAVVATAERGLIVYQLE------NQPS--EFRRIESPLKHQH 215 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEE-E-CSSCEEEEEEETT-EEEEEEGGGCEEEEECS------SSCE--EEEECCCSCSSCE
T ss_pred ccCCCcEEEEECCCCcEEEEE-e-cCCCceEEEecCC-eeEEEeCCCcEEEEEec------cccc--hhhhccccccCCC
Confidence 999999999999999988887 3 3346777777654 67888899999999997 2111 1111222334556
Q ss_pred eEEEEecCCCE----EEEEecCCeEEEEecccCCceeeeeeccCCcc------------ceEEEeecCc--eEEEecCCC
Q 038568 238 NALALNGDGSL----LFSGGCDRWIVVWERERDHRMVFAEALWGHTG------------ALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 238 ~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~--~l~~~~~dg 299 (357)
.++.+.++... +++++.||.|++||++..........+.+|.. .|.+++|+++ +|++++.||
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 66666665544 99999999999999997754334445556665 7999999877 999999999
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|++||++++ +++..+.+|..+|++++|+|+++ +|++++.|+..+.|
T Consensus 296 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~-------~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 296 RFSFWDKDAR---TKLKTSEQLDQPISACCFNHNGN-------IFAYASSYDWSKGH 342 (368)
T ss_dssp CEEEEETTTT---EEEEECCCCSSCEEEEEECTTSS-------CEEEEECCCSTTCG
T ss_pred eEEEEECCCC---cEEEEecCCCCCceEEEECCCCC-------eEEEEecccccccc
Confidence 9999999987 67788889999999999999998 99999988865544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=272.60 Aligned_cols=303 Identities=17% Similarity=0.251 Sum_probs=236.6
Q ss_pred cccceecccccCCCCCCCccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec--Cc--
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI--TK-- 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-- 84 (357)
..+.+++..+.+ |.+.|++++|+ +.+|++|+.| .|++||+ ++++.+..+.+ |...|.+++|++ ++
T Consensus 149 ~~~~~~~~~~~~-----h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 149 SINKKFLLQLSG-----HDGGVWALKYAHGGILVSGSTDRTVRVWDI-KKGCCTHVFEG---HNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp TTTTEEEEEECC-----CSSCEEEEEECSTTEEEEEETTSCEEEEET-TTTEEEEEECC---CSSCEEEEEEEESSSCEE
T ss_pred CCCCcEEEEEeC-----CCcCEEEEEEcCCCEEEEEeCCCCEEEEEC-CCCcEEEEECC---CCCccEEEEEecCCCCCE
Confidence 345667777776 99999999999 6699999999 9999999 88899999988 999999999994 43
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
+++++.|++|++||+.++.............. .......+. .....+.+|...+.++....+++++++.||.|
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENP-----YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSE--EESCGGGCT-----TEEEEECCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcce--EeeccCCCe-----EEEEEccCccceEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999987754332221111000 000000000 00123458889999998777999999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
++||+++++++..+ ..|...|.+++|+|++ .+++|+.||.|++||++ ..+.+..+.+|...|.+++|+
T Consensus 293 ~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~----------~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 293 IVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE----------NGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp EEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT----------TTEEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCcEEEEEeCCCCcEEEEEEc
Confidence 99999999999888 7899999999999998 69999999999999998 456778888999999999997
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeee-ecCCc
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAF-LEGHE 322 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~h~ 322 (357)
+++|++++.||.|++||+++....... ...+...+.++..++.++++|+ ||.|++||++++ +.+.. +..|.
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g---~~~~~~~~~~~ 433 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG---KLVHANILKDA 433 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC---CEEESCTTTTC
T ss_pred --CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC---cEEehhhccCC
Confidence 579999999999999999987643222 2233444556666667888888 899999999998 44443 67789
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..|.+++|+++ . ++++++.||.+.+|
T Consensus 434 ~~v~~v~~~~~-~-------l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 434 DQIWSVNFKGK-T-------LVAAVEKDGQSFLE 459 (464)
T ss_dssp SEEEEEEEETT-E-------EEEEEEETTEEEEE
T ss_pred CcEEEEEecCC-E-------EEEEEEeCCeEEEE
Confidence 99999999733 2 67777788876654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=261.31 Aligned_cols=242 Identities=22% Similarity=0.407 Sum_probs=205.8
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
....++.+ |...|++++|+|++ |++++.||.|++|++.+++....+
T Consensus 14 ~~~~~~~g---h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------------------------- 61 (312)
T 4ery_A 14 ALKFTLAG---HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------------------------- 61 (312)
T ss_dssp EEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----------------------------
T ss_pred eeEEEEcc---cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-----------------------------
Confidence 44556676 99999999999987 999999999999999877654333
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
.+|...|.+++|+| ++|++++.|+.|++||+++++++..+ ..|...|.++.|+|++ +|++++.|+.|++||++
T Consensus 62 -~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-- 137 (312)
T 4ery_A 62 -SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-- 137 (312)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--
T ss_pred -ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--
Confidence 27889999999999 89999999999999999999988888 7899999999999998 69999999999999998
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
..+....+..|..+|.+++|+|++++|++++.||.|++||+++++.... ....+...+.+++|+++ +|
T Consensus 138 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 138 --------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT--LIDDDNPPVSFVKFSPNGKYI 207 (312)
T ss_dssp --------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCSSCCCEEEEEECTTSSEE
T ss_pred --------CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE--EeccCCCceEEEEECCCCCEE
Confidence 4456677888999999999999999999999999999999998764332 23356677888888776 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE--EEe-eCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL--VAI-SSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~--~~~-~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++++.||.|++||++++ +.+..+.+|...+..+ .++ +++. +|++|+.||.|++||
T Consensus 208 ~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGK-------WIVSGSEDNLVYIWN 265 (312)
T ss_dssp EEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECSSSC-------EEEECCTTSCEEEEE
T ss_pred EEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeCCCc-------EEEEECCCCEEEEEE
Confidence 99999999999999987 6677777777654332 344 5565 999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=297.21 Aligned_cols=280 Identities=17% Similarity=0.259 Sum_probs=237.6
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
+..+.+++ |.+.|++++|+ +++||+|+.| .|+|||+ .+++.+..+.+ |..+|.+++|+|++ |++++
T Consensus 4 ~~~~~~~~-----h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~-~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 4 DIKKTFSN-----RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNY-ETQVEVRSIQV---TETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CCEEEEEE-----ECSCEEEEEECSSSSEEEEEETTSEEEEEET-TTTEEEEEEEC---CSSCEEEEEEEGGGTEEEEEE
T ss_pred ccceeeec-----CCCceEEEEECCCCCEEEEEeCCCEEEEEEC-CCCceEEEEec---CCCcEEEEEEeCCCCEEEEEe
Confidence 34556665 99999999999 9999999999 9999999 88899999998 99999999999987 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIW 167 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw 167 (357)
.||.|++||+.+++....+. +|...|.+++|+| .+|++++.||.|++|
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFE------------------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEE------------------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEe------------------------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 99999999999887554442 7889999999999 789999999999999
Q ss_pred EcCcc-hhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec-cccceeEEEEe
Q 038568 168 NASNY-KCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-HRSTVNALALN 243 (357)
Q Consensus 168 d~~~~-~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 243 (357)
|+.++ .....+ ..|...|.+++|+| ++ .+++++.||.|++||++ .......+.. +...+.+++|+
T Consensus 125 ~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~----------~~~~~~~~~~~~~~~v~~~~~~ 193 (814)
T 3mkq_A 125 NWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG----------QSTPNFTLTTGQERGVNYVDYY 193 (814)
T ss_dssp EGGGTSEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT----------CSSCSEEEECCCTTCCCEEEEC
T ss_pred ECCCCceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC----------CCcceeEEecCCCCCEEEEEEE
Confidence 99887 445555 78999999999999 66 69999999999999987 2223333443 44889999999
Q ss_pred c--CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 244 G--DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 244 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
| ++.+|++++.||.|++||+++++ ....+.+|...+.+++|+++ +|++++.||.|++||+.++ +.+..+.
T Consensus 194 ~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~ 267 (814)
T 3mkq_A 194 PLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLN 267 (814)
T ss_dssp CSTTCCEEEEECTTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee
Confidence 9 99999999999999999998876 44556679999999999887 8999999999999999987 6677888
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|...|.+++|+|++. ..+++++.|+.+.+|
T Consensus 268 ~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 268 VGLERSWCIATHPTGR------KNYIASGFDNGFTVL 298 (814)
T ss_dssp CSSSSEEEEEECTTCG------GGEEEEEETTEEEEE
T ss_pred cCCCcEEEEEEccCCC------ceEEEEEeCCCEEEE
Confidence 8999999999999975 133444446666665
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=306.00 Aligned_cols=282 Identities=17% Similarity=0.246 Sum_probs=239.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.+.|++++|+ +++||+|+.| .|++||+ .+++.+..+.+ |...|.+++|+|++ |++++.|++|++||+.++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLDIKA---HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEEC-CCCCEEEEecc---CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999 9999999999 9999999 89999999998 99999999999987 999999999999999988
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+....+. +|...|.+++|++ .++++++.||.|++||+++++++..+
T Consensus 690 ~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 690 KLVHTYD------------------------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp CEEEEEE------------------------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred ceEEEEc------------------------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence 6554433 7889999999998 47999999999999999999998888
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce---eeeeEeeccccceeEEEEecCCCEEEEEec
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH---MLVTTLVKHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
..|...|.+++|+|++ .+++++.||.|++||++............ ............+.+++|+|+++.+++++
T Consensus 740 -~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 817 (1249)
T 3sfz_A 740 -FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA- 817 (1249)
T ss_dssp -CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-
T ss_pred -cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-
Confidence 7899999999999998 69999999999999998321110000000 00001112334788999999999999887
Q ss_pred CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 255 DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
++.+.+||+.++..... ...+|...+.+++|+++ ++++++.||.|++||+.++ ..+..+.+|...|++++|+|
T Consensus 818 ~~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR---LKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp TTEEEEEETTTCCEEEE--EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT---EEEEEECCCSSCEEEEEECT
T ss_pred CCcEEEEEecCCCceeE--EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceeeecCCCccceEEEEECC
Confidence 68899999998875433 33478899999999876 9999999999999999987 67788899999999999999
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++ +|++++.||.|++||
T Consensus 893 dg~-------~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 893 DGS-------SFLTASDDQTIRVWE 910 (1249)
T ss_dssp TSS-------EEEEEETTSCEEEEE
T ss_pred CCC-------EEEEEeCCCeEEEEE
Confidence 998 999999999999996
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=275.07 Aligned_cols=304 Identities=14% Similarity=0.208 Sum_probs=216.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc-----------ccceeccccCCC------------CceEEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS-----------HVDTFSNDLSSS------------GSVKSITFH 81 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~-----------~~~~~~~~~~~~------------~~v~~l~~~ 81 (357)
|.+.|++++|+ |++||+|+.| .|+|||+ .+++ ....+.+ |. ..|++++|+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~---h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQ-EQENKIQSHSRGEYNVYSTFQS---HEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEE-CC-----CCCCCCEEEEEEEEC---CCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEe-cCCCCCCcccccceeEeccccc---ccccccccccccccCceEEEEEc
Confidence 78999999999 8999999999 9999999 6655 4667777 88 889999999
Q ss_pred cCc----eEEeecCCeEEEEecCCccceeeeeecCccccce----------eeeecCCCeEEEecccc-cccccccccEE
Q 038568 82 ITK----IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRL----------IRSVLPNNYVTVRRHKK-RLWLEHWDAVS 146 (357)
Q Consensus 82 ~~~----l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 146 (357)
|++ |++++.|++|++||+.+++............... .....+.. ........ ....+|...|.
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCCC
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh-eeeeccceEEeccCCCcceE
Confidence 974 9999999999999998754321111111100000 00000000 11111111 22358999999
Q ss_pred EEEEec--CeEEEEecCCeEEEEEcCc-chhhh-------hccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccc
Q 038568 147 DLVVKQ--GLMYSVSWDRSFKIWNASN-YKCLE-------SVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~ 214 (357)
+++|+| ++|++| .|+.|++||+++ ++.+. .+ ..|...|.+++|+|++ .|++++.||.|++||++..
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANM-EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSG-GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccc-cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999 788888 899999999984 44433 23 6789999999999987 5999999999999999822
Q ss_pred ccccccccceeeeeEeecccc------------ceeEEEEecCCCEEEEEecCCeEEEEeccc-CCceeeeeeccCCccc
Q 038568 215 DHNKERKSRHMLVTTLVKHRS------------TVNALALNGDGSLLFSGGCDRWIVVWERER-DHRMVFAEALWGHTGA 281 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~ 281 (357)
.........+..|.. .|.+++|+|++++|++++. +.|++||+++ ++ ....+.+|...
T Consensus 260 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~ 329 (447)
T 3dw8_B 260 ------ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR---PVETYQVHEYL 329 (447)
T ss_dssp ------SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS---CSCCEESCGGG
T ss_pred ------ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc---ccceeeccccc
Confidence 111112455556654 8999999999999999999 9999999987 54 33444455432
Q ss_pred ---------------eEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee---------------------------
Q 038568 282 ---------------LLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF--------------------------- 317 (357)
Q Consensus 282 ---------------v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~--------------------------- 317 (357)
+..++|+++ +|++|+.||.|++||+.+++.......
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 223566655 999999999999999998743211100
Q ss_pred --ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 318 --LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 318 --~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
...+...|..++|+|+++ +|++++.|+ +.+|
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~-------~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKEN-------IIAVATTNN-LYIF 442 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSS-------EEEEECSSC-EEEE
T ss_pred ccccccCCceeEEEECCCCC-------EEEEEecce-eeee
Confidence 012356799999999998 999998886 5555
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=265.37 Aligned_cols=278 Identities=12% Similarity=0.155 Sum_probs=206.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc----cccceeccccCCCCceEEEEEec--Cc--eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY----SHVDTFSNDLSSSGSVKSITFHI--TK--IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~--~~--l~~~~~d~~i~v 96 (357)
|.+.|++++|+ +++||+|+.| .|++||+ .++ +....+.+ |...|++++|+| ++ |++++.||.|++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKL-DKDTSNWELSDSWRA---HDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEE-CSSSCCEEEEEEEEC---CSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEC-CCCCCcceecceecc---CCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 99999999999 8999999999 9999999 654 35566676 999999999998 34 999999999999
Q ss_pred EecCCccce------eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEE
Q 038568 97 WKITASRQH------QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKI 166 (357)
Q Consensus 97 wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~i 166 (357)
||+++++.. ..+. .+..|...|.+++|+| .++++++.||.|++
T Consensus 86 wd~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 138 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLC---------------------------TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL 138 (351)
T ss_dssp EEECTTSCTTSSCSEEEEE---------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred EecCCCcccccccCcceee---------------------------eecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence 999876421 1111 1237889999999998 48999999999999
Q ss_pred EEcCcchhhhhcc------------ccccccEEEEEEecC---C-eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 167 WNASNYKCLESVN------------KAHEDAVNAVVVSDN---G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 167 wd~~~~~~~~~~~------------~~~~~~v~~~~~~~~---~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
||+++++.+..+. ..+...+.+++|+|+ + .+++++.++.+.+|+.. .........+
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~ 210 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK--------DGKLHVAAKL 210 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT--------TSCEEEEEEC
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC--------CCceeeeeec
Confidence 9999888776652 257788999999996 4 69999999999887765 1223446677
Q ss_pred eccccceeEEEEecCC----CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE----EEecCCCe
Q 038568 231 VKHRSTVNALALNGDG----SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL----ASGSADRT 300 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l----~~~~~dg~ 300 (357)
.+|...|++++|+|++ ++|++++.||.|++||++........ ..+............ .+ ..+.....
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS---EESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc---CCcccceeccCCCccccccccccccccccee
Confidence 8899999999999998 89999999999999999976532221 112222222222222 22 23334455
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+|+..+ .+.+..+.+|...|++++|+|+++ +|++++.||.|++||
T Consensus 288 ~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~-------~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 288 AELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGT-------ILSSAGDDGKVRLWK 334 (351)
T ss_dssp ---CCSEE---EEEEEEECTTSSCEEEEEECSSSC-------CEEEEETTSCEEEEE
T ss_pred eeeccccc---ccEEEEEecccccEEEEEEcCCCC-------EEEEecCCCcEEEEe
Confidence 56665554 477888999999999999999998 999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=267.02 Aligned_cols=241 Identities=20% Similarity=0.422 Sum_probs=200.7
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~ 104 (357)
..|++++|+ +++|++|+.| .|+|||+ .+++.+..+.+ |...|.+++|+|++ |++++.|++|++||+.+++.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~-~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQG---HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEET-TTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEEC-CCCcEEEEEcc---CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 359999999 8999999999 9999999 88888888988 99999999999987 99999999999999988764
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc--
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-- 179 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 179 (357)
...+ .+...+.+++|+| .++++|+.||.|++||+++++.+..+.
T Consensus 200 ~~~~-------------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~ 248 (393)
T 1erj_A 200 SLTL-------------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248 (393)
T ss_dssp EEEE-------------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred EEEE-------------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence 4332 3456789999988 789999999999999999887665542
Q ss_pred ----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc--ccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 180 ----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER--KSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 180 ----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
.+|...|.+++|+|++ .|++++.|+.|++||++........ .........+.+|...|.+++|+|++.+|++|
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 328 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence 3688899999999999 6999999999999999743221110 01233456678899999999999999999999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--------ceEEEecCCCeEEEeeCCC
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--------DLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~vw~~~~ 308 (357)
+.|+.|++||+++++. ...+.+|...|.++++.+ ++|++|+.||.|++|++.+
T Consensus 329 s~D~~v~iwd~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeE---EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999998874 456678999999998864 4899999999999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=278.35 Aligned_cols=286 Identities=17% Similarity=0.181 Sum_probs=221.0
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCc----cccceeccccCCCCc-eEEEEEec--Cc--eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDY----SHVDTFSNDLSSSGS-VKSITFHI--TK--IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~----~~~~~~~~~~~~~~~-v~~l~~~~--~~--l~~~~~d~~i~v 96 (357)
|.+.|++++|+ +++|++++.+.|++||+ +++ +....+.+ |... |++++|+| ++ |++++.||.|++
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~-~~~~~~~~~~~~~~~---h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCL-DDGDSKVPPVVQFTG---HGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEEC-CSSCCSSCSEEEECT---TTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEEC-CCCCCccccceEEec---CCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 89999999999 88999998339999999 887 78888888 9999 99999999 87 999999999999
Q ss_pred EecCCcc-----ceeeeeecCccccce-eeeecCCCe-EEEecc---------------cccccccccccEEEEEEec--
Q 038568 97 WKITASR-----QHQLVSTLPTVKDRL-IRSVLPNNY-VTVRRH---------------KKRLWLEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 97 wd~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~v~~~~~~~-- 152 (357)
||+.+++ .......+......+ ...+.+++. +..... ....+.+|...|.+++|+|
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCC
Confidence 9997541 111222222111111 122233322 222111 1244568999999999999
Q ss_pred C-eEEEEecCCeEEEEEcCcchhhhhccccccc---cEEEEEEecC-C-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 153 G-LMYSVSWDRSFKIWNASNYKCLESVNKAHED---AVNAVVVSDN-G-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 153 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
. .+++++.|+.|++||+.+++.+..+ ..|.. .|.+++|+|+ + +|++++.|+.|++||++ ..+.
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~----------~~~~ 241 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----------SGEF 241 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----------TCCE
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC----------CCCE
Confidence 3 8999999999999999999988888 77888 9999999999 7 69999999999999997 3455
Q ss_pred eeEe-e---ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec-cCCccceEEEee-cCceEEEecCCCe
Q 038568 227 VTTL-V---KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL-WGHTGALLCLIN-VGDLLASGSADRT 300 (357)
Q Consensus 227 ~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~l~~~~~dg~ 300 (357)
+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++....+... ..+...+.++.+ .++++++++.||.
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence 5666 5 799999999999 9999999999999999999987654333221 122456666666 4559999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
|++||+.++ +.+..+.+|..+|++++| |+
T Consensus 321 i~~~d~~~~---~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 321 LNFYELGHD---EVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEETTEE---EEEEEECCCSSCEEEEET-TT
T ss_pred EEEEECCCC---cEEEEEeCCCCCEEEEEe-cC
Confidence 999999975 566677777777777766 54
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=288.81 Aligned_cols=319 Identities=11% Similarity=0.135 Sum_probs=222.9
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccc---------------cCCCCceEEEEEecCc--eE
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSND---------------LSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~---------------~~~~~~v~~l~~~~~~--l~ 86 (357)
|.++|++++|+ +..|++|+.| .| +||+ .+++.+..+... ..|...|++++|+|++ |+
T Consensus 150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 227 (902)
T 2oaj_A 150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII 227 (902)
T ss_dssp CCCCCCEEEEETTEEEEEEEECSSCEE-EEET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence 99999999999 3689999999 99 9999 888887777651 1135789999999987 99
Q ss_pred EeecCCeEEEEecCCccceee--eeec--Cc-----------cccceee-ee----cCCC-eEEEec-cc----------
Q 038568 87 TAHQDCKIRVWKITASRQHQL--VSTL--PT-----------VKDRLIR-SV----LPNN-YVTVRR-HK---------- 134 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~--~~~~--~~-----------~~~~~~~-~~----~~~~-~~~~~~-~~---------- 134 (357)
+++.||+|++||+.+++.... +... .. ....+.. .+ .++. .+.+.+ ..
T Consensus 228 sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~ 307 (902)
T 2oaj_A 228 TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM 307 (902)
T ss_dssp EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence 999999999999988765432 1100 00 0111111 11 1111 111111 10
Q ss_pred --------------------------ccccc-cccccEEEEEEec------------CeEEEEecCCeEEEEEcCcchhh
Q 038568 135 --------------------------KRLWL-EHWDAVSDLVVKQ------------GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 135 --------------------------~~~~~-~~~~~v~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
...+. .+...|.++.+.+ ..+++++.||.|++||+.++...
T Consensus 308 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~ 387 (902)
T 2oaj_A 308 IDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387 (902)
T ss_dssp EEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEE
T ss_pred EecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcc
Confidence 11111 3456677777633 26888999999999998766422
Q ss_pred hh-------ccccccccEEE----------------------------------EEEecCC-eEEEEeCCCeEEEEEccc
Q 038568 176 ES-------VNKAHEDAVNA----------------------------------VVVSDNG-VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 176 ~~-------~~~~~~~~v~~----------------------------------~~~~~~~-~l~~~~~d~~i~i~d~~~ 213 (357)
.. + ..|...|++ ++|+|++ .|++|+.|++|++||+..
T Consensus 388 ~~~~~~~~~l-~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 388 DKASLFPQNL-SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp CCGGGSCGGG-TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred cccccCCCcc-cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 11 1 223344444 4456777 599999999999999973
Q ss_pred cccccccccceeeeeEe-----eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc--------------------
Q 038568 214 VDHNKERKSRHMLVTTL-----VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR-------------------- 268 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------- 268 (357)
..... .......+ .+|...|.+++|+|++++||+|+.||+|++||+.+++.
T Consensus 467 g~~~~----~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 467 GDIQD----NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp CTTTT----TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred ccccC----CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 31100 00011111 17889999999999999999999999999999987631
Q ss_pred ----------------------eeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCccee--eeeeec-CCc
Q 038568 269 ----------------------MVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYR--CMAFLE-GHE 322 (357)
Q Consensus 269 ----------------------~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~-~h~ 322 (357)
+.+...+.+|.+.|.+++|+++ +||+|+.|++|++||++++.... .+..+. +|.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~ 622 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS 622 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc
Confidence 1235567789999999999887 99999999999999998763211 112343 899
Q ss_pred CceEEEEEe-----eCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAI-----SSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~-----~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|++++|+ ||+. .+.+|++|+.||+|++||
T Consensus 623 ~~V~sv~Fs~~~~~~Dg~----~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 623 ACVTCIEFVIMEYGDDGY----SSILMVCGTDMGEVITYK 658 (902)
T ss_dssp CCEEEEEEEEEECTTSSS----EEEEEEEEETTSEEEEEE
T ss_pred cceEEEEEEEEecCCCCC----cceEEEEEecCCcEEEEE
Confidence 999999999 8751 223999999999999997
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=262.87 Aligned_cols=257 Identities=19% Similarity=0.248 Sum_probs=209.1
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccC--CccccceeccccCCCCceEEEEEecC--c--e
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLIS--DYSHVDTFSNDLSSSGSVKSITFHIT--K--I 85 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~--~--l 85 (357)
++++.+++ |.+.|++++|+ +++||+|+.| .|+|||+ . +.+.+..+.+ |...|++++|+++ + |
T Consensus 2 ~~~~~~~~-----h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 2 SMVVIANA-----HNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTG---HEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp ---CCEEE-----CCCCEEEEEECSSSSEEEEEETTSCEEEEEE-ETTEEEEEEEECC---CSSCEEEEEECCGGGCSEE
T ss_pred CccEEecC-----CcccEEEEEEcCCCCEEEEEECCCcEEEEec-CCCcceeeeEecC---CCCcEEEEEeCCCCCCCEE
Confidence 45666776 99999999999 8999999999 9999999 6 5667778887 9999999999865 3 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWD 161 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~d 161 (357)
++++.||.|++||+.+++... .... ..|...|.+++|+| .++++++.|
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~~-~~~~---------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWSQ-IAVH---------------------------AVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EEEETTSCEEEEEEETTEEEE-EEEE---------------------------CCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEeccCCEEEEEEcCCCceeE-eeee---------------------------cCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 999999999999998875221 1111 27889999999998 489999999
Q ss_pred CeEEEEEcCcchhhh--hccccccccEEEEEEec-------------CC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 162 RSFKIWNASNYKCLE--SVNKAHEDAVNAVVVSD-------------NG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 162 g~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~-------------~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
|.|++||++++.... .+ ..|...|.+++|+| ++ .+++++.|+.|++||++ .......
T Consensus 125 ~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~ 197 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN------SDAQTYV 197 (379)
T ss_dssp SEEEEEECCTTSCCCEEEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE------TTTTEEE
T ss_pred CcEEEEecCCCCceeeEEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec------CCCccee
Confidence 999999998874332 33 57889999999999 45 69999999999999998 3333455
Q ss_pred eeeEeeccccceeEEEEecC---CCEEEEEecCCeEEEEecccCCcee--eeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 226 LVTTLVKHRSTVNALALNGD---GSLLFSGGCDRWIVVWERERDHRMV--FAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
....+.+|...|.+++|+|+ +++|++++.||.|++||++++.... .......|...+.+++|+++ +|++++.|
T Consensus 198 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 198 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 66778889999999999999 8999999999999999999764322 22233458889999999877 99999999
Q ss_pred CeEEEeeCCCCcceeee
Q 038568 299 RTVRIWQRGKENCYRCM 315 (357)
Q Consensus 299 g~i~vw~~~~~~~~~~~ 315 (357)
|.|++|++..+..+..+
T Consensus 278 g~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 278 NKVTLWKENLEGKWEPA 294 (379)
T ss_dssp SSEEEEEEEETTEEEEE
T ss_pred CcEEEEeCCCCCccccc
Confidence 99999999865433333
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=259.01 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=196.4
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
++...+.+ |...|++++|+ +.+|++|+.| +|++||+ .+++.+..+.+ |...|.+++|+|++ |++++
T Consensus 67 ~~~~~l~~-----h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~-~~~~~~~~~~~---h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 67 IPHKALTG-----HNHFVSDLALSQENCFAISSSWDKTLRLWDL-RTGTTYKRFVG---HQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp EEEEEECC-----CSSCEEEEEECSSTTEEEEEETTSEEEEEET-TSSCEEEEEEC---CCSCEEEEEECSSTTEEEEEE
T ss_pred cccchhcc-----CCCceEEEEECCCCCEEEEEcCCCcEEEEEC-CCCcEEEEEcC---CCCcEEEEEECCCCCEEEEEc
Confidence 44556665 99999999999 8899999999 9999999 88899999988 99999999999987 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec------------CeEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ------------GLMYS 157 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~l~~ 157 (357)
.|++|++||+..... ..... ...|...|.+++|+| .++++
T Consensus 138 ~d~~i~~wd~~~~~~-~~~~~---------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 138 AEREIKLWNILGECK-FSSAE---------------------------KENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp TTSCEEEEESSSCEE-EECCT---------------------------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred CCCEEEEEeccCCce-eeeec---------------------------ccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 999999999974321 11111 126888999999998 27999
Q ss_pred EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
++.||.|++||. ..+....+ ..|...|.+++|+|++ +|++|+.|+.|++||++. .......+ .+...
T Consensus 190 ~~~d~~i~iwd~-~~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~---------~~~~~~~~-~~~~~ 257 (343)
T 2xzm_R 190 VGWDGRLKVWNT-NFQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN---------LTYPQREF-DAGST 257 (343)
T ss_dssp EETTSEEEEEET-TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC---------CSSCSEEE-ECSSC
T ss_pred EcCCCEEEEEcC-CCceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCC---------Ccccceee-cCCCc
Confidence 999999999994 44555566 7899999999999999 699999999999999851 11122222 24567
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCcee--eee--------eccCCccceEEEeecCc--eEEEecCCCeEEEe
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMV--FAE--------ALWGHTGALLCLINVGD--LLASGSADRTVRIW 304 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~--------~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw 304 (357)
|.+++|+|++.+++++ .|+.|++||+.+.+... .+. ...+|...+.+++|+|+ +|++|+.||.|++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 9999999999877655 57789999998765432 111 11268888999999876 99999999999999
Q ss_pred eCCCC
Q 038568 305 QRGKE 309 (357)
Q Consensus 305 ~~~~~ 309 (357)
+++++
T Consensus 337 ~~~~g 341 (343)
T 2xzm_R 337 SFETS 341 (343)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 98764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=302.69 Aligned_cols=288 Identities=19% Similarity=0.307 Sum_probs=238.8
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC--c-
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--K- 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~- 84 (357)
..+++++..+++ |.+.|++++|+ +++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+|+ .
T Consensus 644 ~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 644 AETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCSADKKVKIWDS-ATGKLVHTYDE---HSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp TTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TTCCEEEEEEC---CSSCEEEEEECSSSSCC
T ss_pred CCCCCEEEEecc-----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEC-CCCceEEEEcC---CCCcEEEEEEecCCCce
Confidence 345667777776 99999999999 8999999999 9999999 89999999998 9999999999984 3
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++++.|+.|++||+.+++....+. +|...|.+++|+| .++++++.|
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~------------------------------~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMF------------------------------GHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEEC------------------------------CCSSCEEEEEECSSTTEEEEEESS
T ss_pred EEEEEeCCCeEEEEECCCcchhheec------------------------------CCCCCEEEEEEecCCCEEEEEECC
Confidence 8899999999999999886544332 7888899999988 788899999
Q ss_pred CeEEEEEcCcchhhhhc------------------------------------------------------cccccccEE
Q 038568 162 RSFKIWNASNYKCLESV------------------------------------------------------NKAHEDAVN 187 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~------------------------------------------------------~~~~~~~v~ 187 (357)
|.|++||+.+++....+ ...|...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999988765432221 125677889
Q ss_pred EEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 188 AVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 188 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
+++|+|++ .+++++.|+.|++||+. .......+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~----------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNID----------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETT----------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcC----------CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 99999988 68999999999999987 45667788899999999999999999999999999999997642
Q ss_pred Ccee-----------------------------eee-----eccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 267 HRMV-----------------------------FAE-----ALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 267 ~~~~-----------------------------~~~-----~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
.... ... ....+...+.+++++++ ++++|+.||.|++|++.++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~- 993 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN- 993 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-
Confidence 1100 000 00112445777888776 9999999999999999987
Q ss_pred ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+....+.+|...|++++|+|+++ +|++++.||.|++||
T Consensus 994 --~~~~~~~~h~~~v~~l~~s~dg~-------~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 994 --RVFSSGVGHKKAVRHIQFTADGK-------TLISSSEDSVIQVWN 1031 (1249)
T ss_dssp --SCEEECCCCSSCCCCEEECSSSS-------CEEEECSSSBEEEEE
T ss_pred --ceeeecccCCCceEEEEECCCCC-------EEEEEcCCCEEEEEE
Confidence 56677889999999999999998 999999999999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=263.31 Aligned_cols=251 Identities=20% Similarity=0.283 Sum_probs=205.8
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.+..+.+ |...|++++|+|++ |++++.||.|++||+..... .....+
T Consensus 2 ~~~~~~~~---h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-------------------------- 51 (379)
T 3jrp_A 2 SMVVIANA---HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTL-------------------------- 51 (379)
T ss_dssp ---CCEEE---CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEE--------------------------
T ss_pred CccEEecC---CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEe--------------------------
Confidence 45677787 99999999999987 99999999999999974322 122221
Q ss_pred cccccccEEEEEEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecC--C-eEEEEeCCCeEEE
Q 038568 138 WLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDN--G-VVYTGSADGRIRV 208 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i 208 (357)
.+|...|.+++|++ .+|++++.||.|++||+.+++ .+..+ ..|...|.+++|+|+ + .|++++.|+.|++
T Consensus 52 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 52 -TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp -CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred -cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 28999999999974 799999999999999999886 55566 678999999999998 6 6999999999999
Q ss_pred EEccccccccccccceeeeeEeeccccceeEEEEec-------------CCCEEEEEecCCeEEEEecccCCce-eeeee
Q 038568 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-------------DGSLLFSGGCDRWIVVWERERDHRM-VFAEA 274 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~ 274 (357)
||++. . .......+..|...|.+++|+| ++.+|++++.||.|++||++++... .....
T Consensus 130 ~d~~~------~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 130 VEFKE------N--GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp EECCT------T--SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred EecCC------C--CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 99982 1 1223345678999999999999 6999999999999999999876543 34456
Q ss_pred ccCCccceEEEeecC-----ceEEEecCCCeEEEeeCCCCccee--eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 275 LWGHTGALLCLINVG-----DLLASGSADRTVRIWQRGKENCYR--CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
+.+|...|.+++|++ .+|++++.||.|++||++++.... .+.....|...|++++|+|+++ +|+++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~~ 274 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALS 274 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------CEEEE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-------EEEEe
Confidence 778999999999985 489999999999999999864222 2333345889999999999998 99999
Q ss_pred CCCCeEEecC
Q 038568 348 SLNGEIKVWD 357 (357)
Q Consensus 348 ~~dg~v~~wd 357 (357)
+.||.|++||
T Consensus 275 ~~dg~i~iw~ 284 (379)
T 3jrp_A 275 GGDNKVTLWK 284 (379)
T ss_dssp ESSSSEEEEE
T ss_pred cCCCcEEEEe
Confidence 9999999996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=266.15 Aligned_cols=280 Identities=16% Similarity=0.244 Sum_probs=216.6
Q ss_pred ceeEEEEecc---eEEEeeCC-ceEEEeccCCcc---ccceeccccCCCCceEEEEEec-Cc--eEEeecCCeEEEEecC
Q 038568 31 IISCLAVHNS---LLYAASLN-EINVFDLISDYS---HVDTFSNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 31 ~i~~~~~s~~---~l~t~~~d-~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vwd~~ 100 (357)
....++++.+ ++++++.| .|+||++...++ .+..+.+ |.+.|++++|+| ++ |++++.||+|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC---CSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec---CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 4455777733 44457788 999999933333 3445666 999999999999 65 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
++........ ....+.+|...|.+++|+| .+|++++.||.|++||+++++.+..
T Consensus 113 ~~~~~~~~~~-----------------------~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 113 DGGLVLPLRE-----------------------PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp TTCCSSCBCS-----------------------CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCccccCC-----------------------ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 8743211100 0012238999999999999 4899999999999999999988877
Q ss_pred cc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe-eccccc-eeEEEEecCCCEEEEE-
Q 038568 178 VN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRST-VNALALNGDGSLLFSG- 252 (357)
Q Consensus 178 ~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~- 252 (357)
+. ..|...|.+++|+|++ +|++++.|+.|++||++ ....+..+ ..|... +.++.|+|++++|++|
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR----------KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT----------TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC----------CCceeeeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 64 5688999999999998 69999999999999998 34455566 577765 8999999999999999
Q ss_pred --ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE-EEecCCCeEEEeeCCCCcc-eeeeeeecCCcCceE
Q 038568 253 --GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL-ASGSADRTVRIWQRGKENC-YRCMAFLEGHEKPVK 326 (357)
Q Consensus 253 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~~v~ 326 (357)
+.|+.|++||+++......... ..|...+.++.|+++ +| ++|+.||.|++||+.+++. ...+..+. |..+|+
T Consensus 240 ~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~ 317 (402)
T 2aq5_A 240 SRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQR 317 (402)
T ss_dssp CTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCS
T ss_pred cCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCccc
Confidence 7999999999998765322222 246677888888876 56 4667899999999998753 33444444 678999
Q ss_pred EEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 327 SLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++|+|++. ++++ .|+.+++|+
T Consensus 318 ~~~~sp~~~-------~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 318 GMGYMPKRG-------LEVN--KCEIARFYK 339 (402)
T ss_dssp EEEECCGGG-------SCGG--GTEEEEEEE
T ss_pred ceEEecccc-------ccee--cceeEEEEE
Confidence 999999987 6654 466899985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=289.88 Aligned_cols=194 Identities=10% Similarity=0.099 Sum_probs=163.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~ 103 (357)
|.+.|++++|+ +++||+|+.| .|+||+. ...+....+. |..+|.+++|+|+. |++++.|++|++||+.+++
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~-~~~~~~~~~~----~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQ-QQVEVVIKLE----DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECS-TTCEEEEECS----SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeC-CCcEEEEEcC----CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence 99999999999 8999999999 9999999 7766555543 88899999999966 9999999999999999876
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh------
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL------ 175 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------ 175 (357)
....+ .|...|++++|+| +++++|+.||.|++||+++++..
T Consensus 91 ~~~~~-------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 91 VLTTV-------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp EEEEE-------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred EEEEE-------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence 54333 3457899999999 89999999999999999887643
Q ss_pred -----hhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeec----------------
Q 038568 176 -----ESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK---------------- 232 (357)
Q Consensus 176 -----~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------- 232 (357)
..+ ..|...|.+++|+|++ .+++|+.|+.| +||++ ..+....+..
T Consensus 140 ~~~~~~~~-~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 140 LQKSSFFP-AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----------ENEIKQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp HHHHHTCS-SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT----------TTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred cccccccc-ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC----------CCceEEEEecccCCcCCCcccccccc
Confidence 223 5788999999999974 69999999999 99998 2333334433
Q ss_pred --cccceeEEEEecCCCEEEEEecCCeEEEEecccCCce
Q 038568 233 --HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 233 --~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
|...|.+++|+|+|++|++++.||.|++||+++++.+
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 3578999999999999999999999999999887643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=274.06 Aligned_cols=285 Identities=12% Similarity=0.142 Sum_probs=221.1
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCC---ceEEEEEecC-c-
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG---SVKSITFHIT-K- 84 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~-~- 84 (357)
.+.+..+.+ |...|++++|+ ++ +|++++.| .|++||. .+++.+..+.+ |.. .|.+++|+|+ +
T Consensus 150 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 150 GNSLGEVSG-----HSQRINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRT---HHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp CCEEEECCS-----CSSCEEEEEECSSSSCEEEEEETTTEEEEEET-TTBEEEEEECS---SSCTTCCEEEEEECSTTCC
T ss_pred CCcceeeec-----CCccEEEEEECCCCCcEEEEEeCCCcEEEEeC-CCcceeeeecc---cCCCCceEEEEEECCCCCC
Confidence 345556665 99999999999 54 89999999 9999999 88899999987 888 9999999998 6
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDR 162 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg 162 (357)
|++++.|+.|++||+.+++....+.... ..|...|.+++|+. .++++++.||
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------------------~~~~~~v~~~~~~~~~~l~~~~~d~ 274 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQ--------------------------EPVQGGIFALSWLDSQKFATVGADA 274 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTT--------------------------BCCCSCEEEEEESSSSEEEEEETTS
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccc--------------------------cccCCceEEEEEcCCCEEEEEcCCC
Confidence 9999999999999998876554331100 16788999999965 8999999999
Q ss_pred eEEEEEcCcchhhhhccccc----cccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeec------
Q 038568 163 SFKIWNASNYKCLESVNKAH----EDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK------ 232 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------ 232 (357)
.|++||+++++.+..+ ..+ ...+.++.+.....+++++.|+.|++||++. ......+.+
T Consensus 275 ~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~----------~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 275 TIRVWDVTTSKCVQKW-TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH----------DEVLKTISGHNKGIT 343 (615)
T ss_dssp EEEEEETTTTEEEEEE-ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE----------EEEEEEECCCSSCEE
T ss_pred cEEEEECCCCcEEEEE-cCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC----------CcEEEEEeCCCCCEE
Confidence 9999999998888777 333 4678888887555899999999999999873 222222222
Q ss_pred ---------------------------cccceeEEEEecCCCEEEEEec-------------------------------
Q 038568 233 ---------------------------HRSTVNALALNGDGSLLFSGGC------------------------------- 254 (357)
Q Consensus 233 ---------------------------~~~~v~~~~~~~~~~~l~~~~~------------------------------- 254 (357)
|...|.+++| +++..|++++.
T Consensus 344 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~ 422 (615)
T 1pgu_A 344 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 422 (615)
T ss_dssp EEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEE
Confidence 3333333333 22334444444
Q ss_pred -------------------------------------------CCeEEEEecccCCceeeeeeccCCccceEEEeecCc-
Q 038568 255 -------------------------------------------DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD- 290 (357)
Q Consensus 255 -------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 290 (357)
|+.|++||+.+++... ..+.+|...+.+++|+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTS
T ss_pred EeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCC
Confidence 4444444444332111 456678999999999776
Q ss_pred -eEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEee----------CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 -LLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAIS----------SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~----------~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||+.++ +.+..+.+ |...|++++|+| +++ +|++++.||.|++||
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-------~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEED-------LVATGSLDTNIFIYS 569 (615)
T ss_dssp SEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCC-------EEEEEETTSCEEEEE
T ss_pred CEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccCCC-------EEEEEcCCCcEEEEE
Confidence 9999999999999999987 66677777 999999999999 888 999999999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=265.91 Aligned_cols=248 Identities=23% Similarity=0.377 Sum_probs=214.7
Q ss_pred ccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ 90 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 90 (357)
.+.++...+.+ |.+.|.+++|++++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+++.+++++.
T Consensus 161 ~~~~~~~~~~~-----h~~~v~~l~~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~~---h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 161 NTLECKRILTG-----HTGSVLCLQYDERVIITGSSDSTVRVWDV-NTGEMLNTLIH---HCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp SSCCEEEEECC-----CSSCEEEEECCSSEEEEEETTSCEEEEES-SSCCEEEEECC---CCSCEEEEECCTTEEEEEET
T ss_pred CCCeEEEEEcC-----CCCcEEEEEECCCEEEEEcCCCeEEEEEC-CCCcEEEEEcC---CCCcEEEEEEcCCEEEEeeC
Confidence 45667777775 999999999999999999999 9999999 88899999988 99999999999888999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcC
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 170 (357)
||.|++||+.+++........ .+|...|.+++|..+++++|+.||.|++||++
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVL---------------------------VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEE---------------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred CCcEEEEeCCCCCCceeeeEe---------------------------cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 999999999887654332222 28899999999988999999999999999999
Q ss_pred cchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
+++.+..+ ..|...+.++.++ +..+++|+.||.|++||++ ....+..+.+|...|.+++| ++++|+
T Consensus 285 ~~~~~~~~-~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~----------~~~~~~~~~~h~~~v~~~~~--~~~~l~ 350 (435)
T 1p22_A 285 TCEFVRTL-NGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE----------CGACLRVLEGHEELVRCIRF--DNKRIV 350 (435)
T ss_dssp TCCEEEEE-ECCSSCEEEEEEE-TTEEEEEETTSCEEEEETT----------TCCEEEEECCCSSCEEEEEC--CSSEEE
T ss_pred cCcEEEEE-cCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECC----------CCCEEEEEeCCcCcEEEEEe--cCCEEE
Confidence 99999888 7899999999995 3489999999999999998 45677788899999999999 678999
Q ss_pred EEecCCeEEEEecccCCce------eeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC
Q 038568 251 SGGCDRWIVVWERERDHRM------VFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~ 309 (357)
+|+.||.|++||+.++... .....+.+|...|.+++|++.+|++++.||.|++||+.+.
T Consensus 351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999765421 1345677899999999998889999999999999999876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=253.17 Aligned_cols=286 Identities=12% Similarity=0.112 Sum_probs=205.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~ 87 (357)
..+++.+++. |.+.|++++|+ |++||+|+.+.++||+. ++.+....... ..+..+++.++. +++
T Consensus 8 ~~~~~~~~~~-----h~~~V~~v~fs~dg~~la~g~~~~~~iw~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 8 TRNPIVPENH-----VSNPVTDYEFNQDQSCLILSTLKSFEIYNV-HPVAHIMSQEM-----RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEE-TTEEEEEEEEC-----SCCCEEEECTTSSEEEEE
T ss_pred ccCCcccccc-----CCCceEEEEECCCCCEEEEEcCCEEEEEec-CCcceeeeeec-----CCeEEEEEcCCCCEEEEE
Confidence 3444555554 99999999999 89999988777889999 77665554432 246667777654 467
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIW 167 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw 167 (357)
++.|++|++||+.+++....+ .+...|.++.++++.++++. |+.|++|
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~-------------------------------~~~~~v~~v~~~~~~~~~~~-~~~i~i~ 124 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRI-------------------------------KVDAPVKDLFLSREFIVVSY-GDVISVF 124 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEE-------------------------------ECSSCEEEEEECSSEEEEEE-TTEEEEE
T ss_pred ECCccEEEEEECCCCcEEEEE-------------------------------ECCCceEEEEEcCCEEEEEE-cCEEEEE
Confidence 888899999999988655433 35568999999996666654 7899999
Q ss_pred EcCcc-hhhhhccccccccEEEEEEecCCeEEE--EeCCCeEEEEEcccccccccc-----ccceee-eeEeecccccee
Q 038568 168 NASNY-KCLESVNKAHEDAVNAVVVSDNGVVYT--GSADGRIRVWERSVVDHNKER-----KSRHML-VTTLVKHRSTVN 238 (357)
Q Consensus 168 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~-----~~~~~~-~~~~~~~~~~v~ 238 (357)
|+.++ +.+..+ .. +...+++++ ..+++ |+.||.|++||++........ .....+ ...+.+|..+|.
T Consensus 125 d~~~~~~~~~~~-~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 125 KFGNPWKRITDD-IR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp ESSTTCCBSSCC-EE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred ECCCCceeeEEe-cc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 99988 777776 33 444566667 55544 689999999999832210000 000112 677889999999
Q ss_pred EEEEecCCCEEEEEecCCe-EEEEecccCCceeeeeecc-C-CccceEEEeecCc--eEEEecCCCeEEEeeCCCCccee
Q 038568 239 ALALNGDGSLLFSGGCDRW-IVVWERERDHRMVFAEALW-G-HTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
+++|+|++++|++|+.|++ |++||+++++.+ ..+. + |...|.+++|+++ +|++++.|+.|++||++.+...+
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~---~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV---REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTTCCEE---EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCcEE---EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence 9999999999999999998 999999988743 4444 4 8999999999886 99999999999999997653111
Q ss_pred eeee---------------------ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 CMAF---------------------LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~~~~---------------------~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
... ...+..+...++|+++++ +|++++.||.+++|+
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-------~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 277 -RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-------LVVVWPHTRMIETFK 333 (355)
T ss_dssp -SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-------EEEEETTTTEEEEEE
T ss_pred -cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-------EEEEEeCCCeEEEEE
Confidence 111 111223347799999998 999999999999985
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=255.51 Aligned_cols=247 Identities=17% Similarity=0.274 Sum_probs=207.0
Q ss_pred CccceeEEEEe-c-----ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-Cc--eEEeecCCeEEEE
Q 038568 28 HHMIISCLAVH-N-----SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s-~-----~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vw 97 (357)
|...|++++|+ . ++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+| ++ |++++.||.|++|
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKHYVG---HGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTCCEEEEEES---CCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhceEeeeecC---CCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 67889999999 2 489999999 9999999 88899999987 999999999999 55 9999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
|+.+++....+... ..|...|.+++|+| ++|++++.||.|++||+++++.+
T Consensus 144 d~~~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 144 NIQTDTLVAIFGGV---------------------------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp ETTTTEEEEEECST---------------------------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred EeecCeEEEEeccc---------------------------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99988655544322 27889999999999 89999999999999999998877
Q ss_pred hhcccc----------------------------ccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc----ccccc
Q 038568 176 ESVNKA----------------------------HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK----ERKSR 223 (357)
Q Consensus 176 ~~~~~~----------------------------~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~ 223 (357)
..+ .. |...|.+++|+ ..++++++.|+.|++||++...... .....
T Consensus 197 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 197 NAI-KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHH-HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ccc-ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 665 32 88999999999 4489999999999999987433210 11122
Q ss_pred eeeeeEeeccccceeEEEEecC--CCEEEEEecCCeEEEEecccCCcee-eeeeccCC--ccceEEEeecCc--eEEEec
Q 038568 224 HMLVTTLVKHRSTVNALALNGD--GSLLFSGGCDRWIVVWERERDHRMV-FAEALWGH--TGALLCLINVGD--LLASGS 296 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~--~~~v~~~~~~~~--~l~~~~ 296 (357)
...+..+..|...|.+++|+|+ +++|++|+.||.|++||+.+++... ....+.+| ...|.+++|+++ +|++++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 3557778889999999999999 9999999999999999999876433 33455566 789999999876 999999
Q ss_pred CCCeEEEeeCC
Q 038568 297 ADRTVRIWQRG 307 (357)
Q Consensus 297 ~dg~i~vw~~~ 307 (357)
.||.|++||+.
T Consensus 355 ~dg~i~iwd~~ 365 (366)
T 3k26_A 355 DDASIWRWDRL 365 (366)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCEEEEEEec
Confidence 99999999986
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=266.36 Aligned_cols=252 Identities=12% Similarity=0.206 Sum_probs=196.6
Q ss_pred EEeccCCcccccee-ccccCCCCceEEEEEec-Cc--eEEeecCCeEEEEecCC---ccceeeeeecCccccceeeeecC
Q 038568 52 VFDLISDYSHVDTF-SNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVWKITA---SRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 52 iw~~~~~~~~~~~~-~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.|+. +++.+..+ .+ |.+.|++++|+| ++ |++|+.||+|++||+.+ +........
T Consensus 47 ~w~~--~g~~~~~~~~~---h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-------------- 107 (437)
T 3gre_A 47 MGNL--RGKLIATLMEN---EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-------------- 107 (437)
T ss_dssp GGGC--CCCEEEEECTT---TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE--------------
T ss_pred cccc--cceEEeeeccC---CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee--------------
Confidence 4875 55778888 76 999999999999 76 99999999999999876 321111111
Q ss_pred CCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcC---cchhhhhcc---------cc--ccccEEE
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS---NYKCLESVN---------KA--HEDAVNA 188 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~---~~~~~~~~~---------~~--~~~~v~~ 188 (357)
..|...|.+++|+| ++|++++.||.|++||+. +++.+.... .. +...+.+
T Consensus 108 --------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 108 --------------YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp --------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred --------------ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence 16889999999999 899999999999999995 444333220 01 4555666
Q ss_pred EE--EecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec--cccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 189 VV--VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK--HRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 189 ~~--~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
+. +++++ .|++++.|+.|++||++ ..+.+..+.. |...|++++|+|++++|++|+.||.|++||+
T Consensus 174 ~~~~~~~~~~~l~~~~~d~~i~iwd~~----------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 174 MRAFVNEEKSLLVALTNLSRVIIFDIR----------TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEEETT----------TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC----------CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 66 44666 69999999999999998 4556667776 8899999999999999999999999999999
Q ss_pred ccCCceeeeeecc-CCccceEEEeecC----c--eEEEecCCCeEEEeeCCCCcceeeee--------------------
Q 038568 264 ERDHRMVFAEALW-GHTGALLCLINVG----D--LLASGSADRTVRIWQRGKENCYRCMA-------------------- 316 (357)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~v~~~~~~~----~--~l~~~~~dg~i~vw~~~~~~~~~~~~-------------------- 316 (357)
++++. ...+. .|...|.++.+.+ + +|++|+.||.|++||+++++....+.
T Consensus 244 ~~~~~---~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 244 RFNVL---IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp TTTEE---EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred CCccE---EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 98663 33332 6778999996554 3 89999999999999999874332222
Q ss_pred -eecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 -FLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 -~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+.+ |...|++++|+ +++ +|++|+.||.|++||
T Consensus 321 ~~~~~~~~~~~v~~l~~~-~~~-------~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 321 LNFCGIRSLNALSTISVS-NDK-------ILLTDEATSSIVMFS 356 (437)
T ss_dssp CCCCCCCSGGGGCCEEEE-TTE-------EEEEEGGGTEEEEEE
T ss_pred ceecccccCCceEEEEEC-Cce-------EEEecCCCCeEEEEE
Confidence 1122 67789999999 666 999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=274.93 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=236.4
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
..+++.++.+.+ |.++|++++|+ +++|++|+.| .|++||+ .+++.+..+.+ |...|++++|+|++ |
T Consensus 42 ~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~-~~~~~~~~~~~---~~~~v~~~~~s~~~~~l 112 (814)
T 3mkq_A 42 YETQVEVRSIQV-----TETPVRAGKFIARKNWIIVGSDDFRIRVFNY-NTGEKVVDFEA---HPDYIRSIAVHPTKPYV 112 (814)
T ss_dssp TTTTEEEEEEEC-----CSSCEEEEEEEGGGTEEEEEETTSEEEEEET-TTCCEEEEEEC---CSSCEEEEEECSSSSEE
T ss_pred CCCCceEEEEec-----CCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCcEEEEEec---CCCCEEEEEEeCCCCEE
Confidence 345667777876 99999999999 8999999999 9999999 88899999988 99999999999987 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDR 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg 162 (357)
++++.||.|++||+.++...... +.+|...|.+++|+| ..+++++.||
T Consensus 113 ~~~~~dg~i~vw~~~~~~~~~~~-----------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 113 LSGSDDLTVKLWNWENNWALEQT-----------------------------FEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEETTSEEEEEEGGGTSEEEEE-----------------------------EECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred EEEcCCCEEEEEECCCCceEEEE-----------------------------EcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999876322211 127889999999998 6899999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEec--CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSD--NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
.|++||+.+++....+...+...+.+++|+| ++ .+++++.||.|++||++ .......+..|...|.+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----------~~~~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----------TKSCVATLEGHMSNVSF 233 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----------TTEEEEEEECCSSCEEE
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----------CCcEEEEEcCCCCCEEE
Confidence 9999999988887777445558999999998 77 69999999999999987 45567778889999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCccee---
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYR--- 313 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~--- 313 (357)
++|+|++++|++++.||.|++||+.+++ ....+..|...+.+++|+++ .+++++.++.+.+|++.......
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCS---EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEEC
Confidence 9999999999999999999999999876 44556678889999999877 34555556778888876432110
Q ss_pred ----ee---------------------------------eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 314 ----CM---------------------------------AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 314 ----~~---------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+ ..+..+...+.+++|+|+++ ++++++ ||.+.+|
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------~la~~~-~~~~~i~ 382 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-------FVTVVG-DGEYVIY 382 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-------EEEEEE-TTEEEEE
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-------EEEEec-CCEEEEE
Confidence 00 11233555688999999988 888877 8888888
Q ss_pred C
Q 038568 357 D 357 (357)
Q Consensus 357 d 357 (357)
+
T Consensus 383 ~ 383 (814)
T 3mkq_A 383 T 383 (814)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=254.67 Aligned_cols=280 Identities=14% Similarity=0.129 Sum_probs=217.1
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCcc---ccceecccc---------------------------------
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYS---HVDTFSNDL--------------------------------- 69 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~---~~~~~~~~~--------------------------------- 69 (357)
...++.+++|+ |++|+++..+.|++||+ .+++ .+..+....
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~~~~~i~v~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAIIKNCILSFKY-QSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp EECCCCEEEECSSSSEEEEEETTEEEEEEE-ETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEEeCCeEEEEEC-CCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 34579999999 78777665449999999 7777 554444210
Q ss_pred ------------------CCCCceEEEEEecCc--e-EEeecCCeEEEEecC--CccceeeeeecCccccceeeeecCCC
Q 038568 70 ------------------SSSGSVKSITFHITK--I-FTAHQDCKIRVWKIT--ASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 70 ------------------~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
+|...|.+++|+|++ | ++++.||.|++||+. +++....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------- 146 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------- 146 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---------------
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---------------
Confidence 244479999999987 4 889999999999998 66655444321
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhh----hccccccccEEEEEEecC---C-e
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLE----SVNKAHEDAVNAVVVSDN---G-V 196 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~-~ 196 (357)
.|...|.+++|+| .+|++++.+|.|++|++.+++... .+ ..|...|.+++|+|+ + +
T Consensus 147 -------------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~ 212 (450)
T 2vdu_B 147 -------------CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQF 212 (450)
T ss_dssp -------------ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEE
T ss_pred -------------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcE
Confidence 5668899999999 899999999999999998877554 55 678999999999999 8 6
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeE-eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTT-LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 275 (357)
|++++.|+.|++||++ ....+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++....+...
T Consensus 213 l~s~~~d~~i~vwd~~----------~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 213 IITSDRDEHIKISHYP----------QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp EEEEETTSCEEEEEES----------CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred EEEEcCCCcEEEEECC----------CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence 9999999999999997 2233444 55899999999999 9999999999999999999988754443211
Q ss_pred c----------------------CCccceEEEeecCc--eEEEec-CCCeEEEeeC--CCCcceeeeeeecCCcCceEEE
Q 038568 276 W----------------------GHTGALLCLINVGD--LLASGS-ADRTVRIWQR--GKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 276 ~----------------------~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~--~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
. .....+.++.+.++ +|++++ .|+.|++|++ .++.....+..+..| +.|.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~ 360 (450)
T 2vdu_B 282 SLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL 360 (450)
T ss_dssp HHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE
T ss_pred hhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE
Confidence 0 23356788888865 888887 8999999999 555455677778888 889999
Q ss_pred EEeeCCCCCCCCeEEEEEcCC------CCeEEec
Q 038568 329 VAISSSSSASNGIVSIGSGSL------NGEIKVW 356 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~------dg~v~~w 356 (357)
+|+|++. ++++++. +..|++|
T Consensus 361 ~~~~~~~-------~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 361 SAHNDEF-------QVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEETTEE-------EEEECCTTCCSSCCCSEEEE
T ss_pred EecCCcE-------EEEEecccCCCCCCcceEEE
Confidence 9999642 4444443 4557776
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=261.45 Aligned_cols=242 Identities=16% Similarity=0.097 Sum_probs=191.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
+.++|++++|+|++ |++++.|+.|++||+.++.. .... .+.+|...|.++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~---------------------------~~~~h~~~v~~~ 61 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-KHAR---------------------------TFSDHDKIVTCV 61 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-EECC---------------------------CBCCCSSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-EEEE---------------------------EEecCCceEEEE
Confidence 67899999999987 88999999999999987621 1111 123899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcch---hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+|+| ++|++++.|+.|++||+.+++ ....+ ..|...|.+++|+|++ +|++++.|+.|++||++. ..
T Consensus 62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~- 133 (377)
T 3dwl_C 62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ------EN- 133 (377)
T ss_dssp EECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----------
T ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECC------cc-
Confidence 9999 899999999999999999877 44555 6799999999999998 699999999999999972 11
Q ss_pred ceeeeeEeec-cccceeEEEEecCCCEEEEEecCCeEEEEecccCC---------------ceeeeeeccCCccceEEEe
Q 038568 223 RHMLVTTLVK-HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH---------------RMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 223 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~v~~~~ 286 (357)
.......+.. |...|.+++|+|++++|++++.|+.|++||++... .......+ +|...|.+++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 1113455666 99999999999999999999999999999986322 11234444 8999999999
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCcc-eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKENC-YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
|+++ +|++++.||.|++||+++++. ...+..+.+|..+|++++|+|+++ +|++|+.|+.+.+|
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-------IVAAGYNYSPILLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-------EEEEESSSSEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-------EEEEEcCCcEEEEE
Confidence 9876 899999999999999998743 123677889999999999999998 99999887777444
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=271.24 Aligned_cols=224 Identities=11% Similarity=0.105 Sum_probs=176.0
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecC--------eEE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQG--------LMY 156 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~l~ 156 (357)
|++++.|++|+|||+.+++...... ..+..|.+.|.+++|+|. +|+
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~--------------------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LA 229 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKV--------------------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLS 229 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEE--------------------------EEEEECCCSEEEEEECSSCCCSSSSCEEE
T ss_pred hccCCCCceEEEEEccCCCCCceEE--------------------------EEEEecCCcEEEEEECCCCCCCCCCceEE
Confidence 4556788999999998765321110 011266788999999973 899
Q ss_pred EEecCCeEEEEEcCcchhh-----------hhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccccccee
Q 038568 157 SVSWDRSFKIWNASNYKCL-----------ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 157 ~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
+++.||+|++||+.+++.. ..+ ..|...|.+++|++++.|++|+.||+|++||++. . ..
T Consensus 230 s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~------~---~~ 299 (524)
T 2j04_B 230 FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTD------P---EV 299 (524)
T ss_dssp EEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTB------C---SS
T ss_pred EEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCC------C---CC
Confidence 9999999999999876432 234 5688999999999988999999999999999972 1 12
Q ss_pred eeeEeeccccceeEE--EEecCC-CEEEEEecCCeEEEEecccCCceeeeeeccCCc--cceEEEeecCc--eEEEecCC
Q 038568 226 LVTTLVKHRSTVNAL--ALNGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHT--GALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~l~~~~~d 298 (357)
+...+.+|...|.++ +|+|++ .+|++|+.|++|++||+++++... .+.+|. ..+.+++|+|+ .+++++.|
T Consensus 300 ~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 300 PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCC
Confidence 345578899999999 578887 899999999999999999876432 223343 24777888875 89999999
Q ss_pred CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 299 RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 299 g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++||++++ .++..+.+|.+.|++++|+|+++ +|++|+.||+|++||
T Consensus 377 ~tv~lwd~~~~---~~~~~l~gH~~~V~sva~Sp~g~-------~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 377 SSLRAVPSRAA---FAVHPLVSRETTITAIGVSRLHP-------MVLAGSADGSLIITN 425 (524)
T ss_dssp SEEEEEETTCT---TCCEEEEECSSCEEEEECCSSCC-------BCEEEETTTEEECCB
T ss_pred CcEEEEECccc---ccceeeecCCCceEEEEeCCCCC-------eEEEEECCCEEEEEe
Confidence 99999999987 44566778999999999999998 999999999999997
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=259.98 Aligned_cols=260 Identities=8% Similarity=0.016 Sum_probs=204.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
-...|.+++|+ |+++|+++.| +|+ |. ..++ .+.+ |...|.+++|+|++ .++.+.+|+.+..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~-~~~~---~l~g---h~~~v~~V~FsPdg-----~~~~~~~~~~~~~-- 77 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QP-KYAK---DINC---NSKNLFHVKEFPLE-----FENKLDFELAQQN-- 77 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EE-CCCS---CCSS---BGGGTEEEEEECCC-----CCCTTTTSCCCSS--
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cc-cccc---eecC---CCccEEEEEECCCC-----CcceEEEEeCCCc--
Confidence 56789999999 9999999999 999 76 5554 4456 99999999999988 4555555543322
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
..+.. .|...|.+++|+| .+||+++.||.|++||.+. ++..+ . |
T Consensus 78 -~~~~~-----------------------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~ 123 (588)
T 2j04_A 78 -GLLNS-----------------------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-S 123 (588)
T ss_dssp -CSSTT-----------------------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-C
T ss_pred -eEeec-----------------------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-C
Confidence 21111 4578899999999 8899999999999999654 55555 3 4
Q ss_pred cc-----cEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc---ceeeeeEe----eccccceeEEEEecCCCEE
Q 038568 183 ED-----AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS---RHMLVTTL----VKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 183 ~~-----~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~----~~~~~~v~~~~~~~~~~~l 249 (357)
.. .+.+++|+|+| +|++|+.||+|++||+. .+.. ..-.+..+ .+|...|.+++|+|+| +
T Consensus 124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~------~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L 195 (588)
T 2j04_A 124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR------KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L 195 (588)
T ss_dssp SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC------CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC------CCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence 44 59999999999 59999999999999997 2211 00124444 5677899999999999 8
Q ss_pred EEEecCCeEEEEecccCCceeeeeec-cCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEAL-WGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
++++.|+.|++||+..+........+ .+|...|.+++|+++.||+++ ++.|++||+.++ +......+|.+.|.++
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~---~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY---SISSLKTGSLENFHII 271 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT---EEEEEECSCCSCCCEE
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC---eEEEEEcCCCceEEEE
Confidence 88899999999999877632222344 378889999999977899887 699999999986 3323333899999999
Q ss_pred EE--eeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VA--ISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~--~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+| +|++. .|++++.||+ ++|.
T Consensus 272 a~~~s~d~~-------~La~a~edG~-klw~ 294 (588)
T 2j04_A 272 PLNHEKEST-------ILLMSNKTSY-KVLL 294 (588)
T ss_dssp EETTCSSCE-------EEEECSSCEE-EEEE
T ss_pred EeeeCCCCC-------EEEEEcCCCC-EEEe
Confidence 99 99987 9999999999 8884
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=248.16 Aligned_cols=248 Identities=23% Similarity=0.377 Sum_probs=204.7
Q ss_pred CCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecc
Q 038568 57 SDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRH 133 (357)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (357)
++.+...+|++ |.+.|++|+|+|+. |+||+.|++|++||+.+.+.......
T Consensus 26 ~~~~l~~tL~G---H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~----------------------- 79 (340)
T 4aow_A 26 EQMTLRGTLKG---HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ----------------------- 79 (340)
T ss_dssp CEEEEEEEECC---CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE-----------------------
T ss_pred CceEEEEEECC---ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee-----------------------
Confidence 44556678888 99999999999863 89999999999999987653221110
Q ss_pred cccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEE
Q 038568 134 KKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWE 210 (357)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d 210 (357)
..+.+|...|.+++|+| .+|++++.|+.|++|+.......... ..+...+..+.+++++ .|++++.|+.+++||
T Consensus 80 --~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 80 --RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp --EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 12238999999999999 89999999999999999988777766 6777888899999988 699999999999999
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
+. ..........+|...+..++|++++ .++++++.|+.|++||+++.+ ....+.+|...|.+++|+
T Consensus 157 ~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~s 224 (340)
T 4aow_A 157 TL---------GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK---LKTNHIGHTGYLNTVTVS 224 (340)
T ss_dssp TT---------SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEEC
T ss_pred eC---------CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc---eeeEecCCCCcEEEEEEC
Confidence 86 1233445566789999999998854 578899999999999999876 455677899999999998
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++ +|++|+.||.|++||+++. +.+..+.. ...|.++.|+|++. +++++.|+.|++||
T Consensus 225 ~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~--------~~~~~~d~~i~iwd 283 (340)
T 4aow_A 225 PDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIINALCFSPNRY--------WLCAATGPSIKIWD 283 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEEEEEECSSSS--------EEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEEeeecCCCCc--------eeeccCCCEEEEEE
Confidence 76 9999999999999999987 55566654 46899999999875 56677899999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=252.20 Aligned_cols=237 Identities=17% Similarity=0.241 Sum_probs=202.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
|...|++++|+ +++|++|+.| .|++||+ .+++.+..+.+ |...|.+++|+++.|++++.||.|++||++....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDV-ESQTKLRTMAG---HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEEEECC---CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEEC-cCCeEEEEecC---CCCceEEEEECCCEEEEEcCCCCEEEEecccCcc
Confidence 78999999999 8999999999 9999999 88888999987 9999999999888899999999999999985432
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
.. .. +.+|...|.+++|+| .+|++++.||.|++||+++++.+..+ ..|
T Consensus 209 ~~--~~---------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~ 258 (401)
T 4aez_A 209 QI--GT---------------------------LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNH 258 (401)
T ss_dssp EE--EE---------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-CCC
T ss_pred ee--eE---------------------------EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-cCC
Confidence 11 11 127899999999999 89999999999999999998888887 789
Q ss_pred cccEEEEEEecCC--eEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE--EecCC
Q 038568 183 EDAVNAVVVSDNG--VVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS--GGCDR 256 (357)
Q Consensus 183 ~~~v~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg 256 (357)
...|.+++|+|++ .+++++ .|+.|++||++ .......+. +...|.+++|+|+++++++ |+.||
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----------TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----------TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----------CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC
Confidence 9999999999977 366654 79999999997 334444454 6678999999999999999 44899
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
.|++||+.++... ....+.+|...|.+++|+++ +|++++.||.|++|++.+++
T Consensus 328 ~i~v~~~~~~~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 328 NLSIWSYSSSGLT-KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEEETTEEE-EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred cEEEEecCCccce-eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 9999999876533 33456789999999999876 99999999999999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=251.01 Aligned_cols=242 Identities=16% Similarity=0.134 Sum_probs=199.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|..+|++++|+|++ |++++.|+.|++||+.+++. ..+..+ .+|...|.++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~---------------------------~~h~~~v~~~ 58 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHEL---------------------------KEHNGQVTGV 58 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEE---------------------------ECCSSCEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-Eeeeee---------------------------cCCCCcccEE
Confidence 89999999999987 88999999999999987751 112111 2788999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+|+| ++|++++.||.|++||+++++....+. ..|...+.+++|+|++ +|++++.|+.|++||++ ......
T Consensus 59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~------~~~~~~ 132 (372)
T 1k8k_C 59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE------QENDWW 132 (372)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE------TTTTEE
T ss_pred EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec------CCCcce
Confidence 9999 899999999999999998876443321 5688899999999998 69999999999999998 222111
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC---------------CceeeeeeccCCccceEEEeecC
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD---------------HRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
........|...|.+++|+|++++|++++.||.|++||++.. ........+.+|...+.++.|++
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 223334568899999999999999999999999999996421 01124556668999999999987
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ +|++++.||.|++||++++ +.+..+..|..+|++++|+|++. +|++| .||.|++||
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITESS-------LVAAG-HDCFPVLFT 271 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETTE-------EEEEE-TTSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCC---ceeEEEccCCCCeEEEEEecCCC-------EEEEE-eCCeEEEEE
Confidence 6 9999999999999999987 56777889999999999999997 78777 899999996
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=254.61 Aligned_cols=254 Identities=12% Similarity=0.137 Sum_probs=200.0
Q ss_pred cceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 62 VDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 62 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
...+.+ |.+.|++++|+|+.|++++.||.|++||+.+++........ ..+.+|
T Consensus 9 ~~~~~~---h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~------------------------~~~~~h 61 (397)
T 1sq9_A 9 ANAGKA---HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKS------------------------YSHFVH 61 (397)
T ss_dssp EEESSC---SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGE------------------------EEEECC
T ss_pred hhhhhh---hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcc------------------------eEEecC
Confidence 345566 99999999999977999999999999999887621110000 111278
Q ss_pred cccEEEEEEec---------CeEEEEecCCeEEEEEcCcchh-----hhhccccc-----cccEEEEEEe----cCC-e-
Q 038568 142 WDAVSDLVVKQ---------GLMYSVSWDRSFKIWNASNYKC-----LESVNKAH-----EDAVNAVVVS----DNG-V- 196 (357)
Q Consensus 142 ~~~v~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~-~- 196 (357)
...|.+++|++ .+|++++.||.|++||+.+++. +..+ ..| ...|.+++|+ |++ .
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceE
Confidence 89999999986 4799999999999999998887 6666 566 5899999999 888 6
Q ss_pred EEEEeCCCeEEEEEccccccccccccc-eeeeeEe-------eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSR-HMLVTTL-------VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
|++++.||.|++||++........... ..+...+ ..|...|.+++|+|++ +|++++.||.|++||+++.+.
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce
Confidence 899999999999999831000001111 1111134 4478899999999999 999999999999999998764
Q ss_pred eeeeeeccC---C---ccceEEEeecCc--eEEEecCC---CeEEEeeCCCCcceeeeeeecC-------------CcCc
Q 038568 269 MVFAEALWG---H---TGALLCLINVGD--LLASGSAD---RTVRIWQRGKENCYRCMAFLEG-------------HEKP 324 (357)
Q Consensus 269 ~~~~~~~~~---~---~~~v~~~~~~~~--~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~-------------h~~~ 324 (357)
. ..+.. | ...+.+++|+++ +|++++.| |.|++||++++ +.+..+.+ |...
T Consensus 220 ~---~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 220 L---YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp E---EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSC
T ss_pred e---EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCc
Confidence 3 44445 8 899999999876 99999999 99999999987 56677777 9999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++|+|+++ +|++++.||.|++||
T Consensus 294 v~~~~~~~~~~-------~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 294 VMSLSFNDSGE-------TLCSAGWDGKLRFWD 319 (397)
T ss_dssp EEEEEECSSSS-------EEEEEETTSEEEEEE
T ss_pred EEEEEECCCCC-------EEEEEeCCCeEEEEE
Confidence 99999999998 999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=252.22 Aligned_cols=252 Identities=14% Similarity=0.157 Sum_probs=197.9
Q ss_pred EEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeE
Q 038568 52 VFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYV 128 (357)
Q Consensus 52 iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (357)
+|+. ...+....+.+ |...|++++|+|++ |++++.||.|++||+.+++....+..
T Consensus 57 ~~~~-~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------ 114 (383)
T 3ei3_B 57 IRSL-KSYKLHRTASP---FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------------------ 114 (383)
T ss_dssp HHHH-TTCEEEEEECC---CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------------------
T ss_pred cccc-cccceEEeccC---CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------------------
Confidence 4444 45556667776 99999999999975 99999999999999998765544321
Q ss_pred EEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC-eEEEEeC
Q 038568 129 TVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSA 202 (357)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~ 202 (357)
.+|...|.+++|+| .+|++++.|+.|++||+++ +.+..+. ..+...+.+++|+|++ .|++++.
T Consensus 115 ----------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 183 (383)
T 3ei3_B 115 ----------MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS 183 (383)
T ss_dssp ----------CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEET
T ss_pred ----------CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECC
Confidence 16899999999998 7999999999999999985 4444441 2344789999999998 6999999
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccCCcee-eeeeccCCcc
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMV-FAEALWGHTG 280 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~ 280 (357)
|+.|++||++ ...+..+..|...|.+++|+|+++ +|++++.|+.|++||+++.+... ....+ +|..
T Consensus 184 d~~i~i~d~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~ 251 (383)
T 3ei3_B 184 TGRLLLLGLD-----------GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK 251 (383)
T ss_dssp TSEEEEEETT-----------SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS
T ss_pred CCCEEEEECC-----------CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC
Confidence 9999999985 345677788999999999999998 99999999999999999743211 22223 6899
Q ss_pred ceEEEeecC-c--eEEEecCCCeEEEeeCCCCcceeeeeee----cCCc----------CceEEEEEeeCCCCCCCCeEE
Q 038568 281 ALLCLINVG-D--LLASGSADRTVRIWQRGKENCYRCMAFL----EGHE----------KPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 281 ~v~~~~~~~-~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~h~----------~~v~~~~~~~~~~~~~~~~~~ 343 (357)
.+.+++|++ + +|++++.|+.|++||+++++....+... ..|. ..+..++|+|++. +
T Consensus 252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-------~ 324 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-------L 324 (383)
T ss_dssp CEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-------T
T ss_pred ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-------c
Confidence 999999988 4 9999999999999999987433322211 1222 3344566777775 4
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++.||.|++||
T Consensus 325 --s~s~d~~i~iwd 336 (383)
T 3ei3_B 325 --LLNDKRTIDIYD 336 (383)
T ss_dssp --CTTCCCCEEEEE
T ss_pred --ccCCCCeEEEEe
Confidence 888999999997
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=268.35 Aligned_cols=244 Identities=23% Similarity=0.356 Sum_probs=197.9
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
.+.+.+.+ |...|++++|+ +++|++|+.| .|+|||+ .+++.+..+.+ |...|.+++|+|++ |++++
T Consensus 421 ~~~~~~~~-----h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~-~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s 491 (694)
T 3dm0_A 421 VAQRRLTG-----HSHFVEDVVLSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVG---HTKDVLSVAFSLDNRQIVSAS 491 (694)
T ss_dssp EEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TTTEEEEEEEC---CSSCEEEEEECTTSSCEEEEE
T ss_pred cccceecC-----CCCcEEEEEECCCCCEEEEEeCCCcEEEEEC-CCCcceeEEeC---CCCCEEEEEEeCCCCEEEEEe
Confidence 34556665 99999999999 8999999999 9999999 88888899988 99999999999987 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFK 165 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~ 165 (357)
.|++|++||............ ..+|...|.+++|+| ..+++++.|++|+
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~---------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEG---------------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSS---------------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred CCCEEEEEECCCCcceeeccC---------------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEE
Confidence 999999999865432211111 127889999999999 3799999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+||+++++....+ ..|...|.+++|+|++ +|++++.|+.|++||++ ..+.+..+. +...|.+++|+|
T Consensus 545 vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~----------~~~~~~~~~-~~~~v~~~~~sp 612 (694)
T 3dm0_A 545 VWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA----------EGKKLYSLE-ANSVIHALCFSP 612 (694)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT----------TTEEEECCB-CSSCEEEEEECS
T ss_pred EEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----------CCceEEEec-CCCcEEEEEEcC
Confidence 9999998888888 8899999999999998 69999999999999998 333444443 456799999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeec----------------cCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEAL----------------WGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
++.+|++++ ++.|++||++++.....+... ..+...+.+++|+++ +|++|+.||.|++|++
T Consensus 613 ~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 613 NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 998877765 566999999987644322110 011223678888876 9999999999999998
Q ss_pred C
Q 038568 307 G 307 (357)
Q Consensus 307 ~ 307 (357)
.
T Consensus 692 ~ 692 (694)
T 3dm0_A 692 G 692 (694)
T ss_dssp -
T ss_pred c
Confidence 6
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=246.94 Aligned_cols=247 Identities=21% Similarity=0.292 Sum_probs=205.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEe
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTA 88 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 88 (357)
.++++.+.++ +.+ |...|++|+|+ |++||+|+.| .|+|||+ ++++.+..+.+ |...+.++++++..|++|
T Consensus 133 ~tg~~~~~~~-~~~--~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~-~~~~~~~~~~~---h~~~v~~~s~~~~~l~sg 205 (420)
T 4gga_A 133 SSGDILQLLQ-MEQ--PGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTS---HSARVGSLSWNSYILSSG 205 (420)
T ss_dssp TTCCEEEEEE-CCS--TTCCEEEEEECTTSSEEEEEETTSCEEEEET-TTTEEEEEECC---CSSCEEEEEEETTEEEEE
T ss_pred CCCCEEEEEE-ecC--CCCcEEEEEECCCCCEEEEEECCCeEEEEEc-CCCcEEEEEeC---CCCceEEEeeCCCEEEEE
Confidence 3455555554 123 88999999999 9999999999 9999999 89999999998 999999999998889999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|+.+++||........ .. +.+|...+..+.+.+ .++++++.|+.+++
T Consensus 206 s~d~~i~~~d~~~~~~~~--~~---------------------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEHHV--AT---------------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp ETTSEEEEEETTSSSCEE--EE---------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eCCCceeEeeecccceee--EE---------------------------ecccccceeeeeecCCCCeeeeeeccccceE
Confidence 999999999988654322 11 128899999999999 89999999999999
Q ss_pred EEcCcchh----hhhccccccccEEEEEEecCC--eEEE--EeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 167 WNASNYKC----LESVNKAHEDAVNAVVVSDNG--VVYT--GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 167 wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
||..+++. +... ..|...|.+++|+|.+ .+++ |+.|+.|++||++ .......+. +...+.
T Consensus 257 ~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~----------t~~~~~~~~-~~~~v~ 324 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----------SGACLSAVD-AHSQVC 324 (420)
T ss_dssp EESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT----------TTEEEEEEE-CSSCEE
T ss_pred Eeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC----------ccccceeec-ccccee
Confidence 99987653 2333 6788999999999977 3444 4579999999998 344555555 446788
Q ss_pred EEEEecCCCEEEEEe--cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 239 ALALNGDGSLLFSGG--CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
++.|+|+++.+++++ .|+.|+|||+.+++ .+..+.+|...|++++|+|+ +|++|+.|++|++||+.+.
T Consensus 325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred eeeecCCCCeEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999888765 79999999999887 45677899999999999876 9999999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=256.88 Aligned_cols=201 Identities=13% Similarity=0.168 Sum_probs=166.6
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|...|++|+|+|.. |++|+.||+|+|||+.+++....+.. .+|.+.|++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~----------------------------~gH~~~V~~ 169 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------------------IGAGGSITG 169 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC----------------------------CSSSCCCCE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc----------------------------cCCCCCEEE
Confidence 88999999999843 99999999999999987764433321 289999999
Q ss_pred EEEec---CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 148 LVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 148 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
++|+| ++|++++.||+|++||++++....... ..+...+.+++|+|++ +|++|+.||.|++||++
T Consensus 170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~---------- 239 (435)
T 4e54_B 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD---------- 239 (435)
T ss_dssp EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS----------
T ss_pred EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC----------
Confidence 99997 699999999999999998654322220 2334567899999998 69999999999999986
Q ss_pred ceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg 299 (357)
...+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++.+.........+|...|.+++|+++ +|++++.||
T Consensus 240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence 234556788999999999999876 7889999999999999987655455556689999999999876 999999999
Q ss_pred eEEEeeCCCCc
Q 038568 300 TVRIWQRGKEN 310 (357)
Q Consensus 300 ~i~vw~~~~~~ 310 (357)
.|++||+.+++
T Consensus 319 ~i~iwd~~~~~ 329 (435)
T 4e54_B 319 EIRVYSASQWD 329 (435)
T ss_dssp CEEEEESSSSS
T ss_pred EEEEEECCCCc
Confidence 99999999874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=272.85 Aligned_cols=243 Identities=20% Similarity=0.260 Sum_probs=203.5
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccC--CccccceeccccCCCCceEEEEEecC--c--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLIS--DYSHVDTFSNDLSSSGSVKSITFHIT--K--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~--~--l~~~~~d~~i~vwd 98 (357)
|.+.|++++|+ +++|++|+.| .|+|||+ . +++.+..+.+ |.++|++++|+|+ + |++++.||.|++||
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~-~~~~~~~~~~l~~---h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTG---HEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEE-ETTEEEEEEEECC---CSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEec-CCCCCccceeccC---CcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 99999999999 8999999999 9999999 6 5567778887 9999999999876 4 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKC 174 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~ 174 (357)
+.+++... .... ..|...|.+++|+| ..+++|+.||.|++||++++..
T Consensus 84 ~~~~~~~~-~~~~---------------------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 84 EENGRWSQ-IAVH---------------------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EETTEEEE-EEEE---------------------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred CCCCcccc-cccc---------------------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 98765221 1111 27899999999998 5899999999999999988743
Q ss_pred h--hhccccccccEEEEEEecC-------------C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 175 L--ESVNKAHEDAVNAVVVSDN-------------G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 175 ~--~~~~~~~~~~v~~~~~~~~-------------~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
. ..+ ..|...|.+++|+|. + .+++|+.||.|++||++ ...........+.+|..+|+
T Consensus 136 ~~~~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~------~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 136 TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN------SDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp CCCEEE-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE------TTTTEEEEEEEECCCSSCEE
T ss_pred cceeEe-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc------CCcccceeeeeecCCCCcEE
Confidence 2 233 678899999999993 5 69999999999999998 33334466778889999999
Q ss_pred EEEEecC---CCEEEEEecCCeEEEEecccCCcee--eeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 239 ALALNGD---GSLLFSGGCDRWIVVWERERDHRMV--FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 239 ~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
+++|+|+ +++|++++.||.|++||++++.... .......|...+.+++|+++ +|++++.||.|++|++..+
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999 8999999999999999998764221 22334458888998998876 9999999999999999853
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=249.39 Aligned_cols=266 Identities=9% Similarity=0.022 Sum_probs=195.6
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+++|++|+.| .|++||+ .+++.+..+. ...|.++.|+|+ +++++.|++|++|+..............
T Consensus 48 ~~~l~sg~~Dg~v~iwd~-~~~~~~~~~~-----~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~----- 115 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQL-KDSKTITTIT-----TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK----- 115 (343)
T ss_dssp EEEEEEEEETTEEEEEEE-SSSSCEEEEE-----EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC-----
T ss_pred CCEEEEECCCCcEEEEEC-CCCcEEEEEe-----cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc-----
Confidence 8899999999 9999999 8888877775 356778889998 9999999999999887432111000000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
.+. .....|...|.+++|+| +++++++.||.|++||+++++.+......+...+.+++|+|
T Consensus 116 -----------~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 116 -----------VLR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp -----------EEE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred -----------eeE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence 000 00125668899999988 68999999999999999998886655345666899999999
Q ss_pred CC-eEEEEeCCCeEEEEEccccccccccccceeee-eEeec-cccceeEEEEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 194 NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLV-TTLVK-HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 194 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
++ +|++|+.||.|++||++ ..... ..+.. |..+|++++|+|++.+|++++ |+.|++||+++.+...
T Consensus 181 dg~~lasg~~dg~i~iwd~~----------~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLS----------SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp TSCEEEEECTTSCEEEEESS----------CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred CCCEEEEEcCCCEEEEEECC----------CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 99 58889999999999998 22233 45566 999999999999999999999 5599999999887544
Q ss_pred eeeeccCCccceE--EEeecCc--eEEEecC-CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee---CCCCCCCCeE
Q 038568 271 FAEALWGHTGALL--CLINVGD--LLASGSA-DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS---SSSSASNGIV 342 (357)
Q Consensus 271 ~~~~~~~~~~~v~--~~~~~~~--~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~ 342 (357)
.+..+..|...+. +++|+++ +|++++. |+.|++|++.+.... ... .++..+.|.+ +..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~------- 315 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFT------- 315 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCC-------
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccc-------
Confidence 4444333444443 5777765 8999888 999999999765211 111 4567777777 555
Q ss_pred EEEEcCCCCeEEec
Q 038568 343 SIGSGSLNGEIKVW 356 (357)
Q Consensus 343 ~l~s~~~dg~v~~w 356 (357)
.+++++.||.++++
T Consensus 316 ~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 316 DMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEEEETTEEEEE
T ss_pred eeEEEecCCceEEE
Confidence 77777777777664
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=243.49 Aligned_cols=241 Identities=10% Similarity=0.099 Sum_probs=185.5
Q ss_pred CccceeEEEEecceEEEe-----------eCC-ceEEEeccCCcc-ccceec-----cccCCCCceEEEEEecCc--eE-
Q 038568 28 HHMIISCLAVHNSLLYAA-----------SLN-EINVFDLISDYS-HVDTFS-----NDLSSSGSVKSITFHITK--IF- 86 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~-----------~~d-~i~iw~~~~~~~-~~~~~~-----~~~~~~~~v~~l~~~~~~--l~- 86 (357)
|...|.+++++++.+++| +.| .+++|++ .... .+.... ....+...+.+++|+||+ ++
T Consensus 72 ~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~ 150 (365)
T 4h5i_A 72 NDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKY-DKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI 150 (365)
T ss_dssp TSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEE-ETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred CCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEe-cCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE
Confidence 899999999997777765 356 8999998 4432 221111 111255679999999997 44
Q ss_pred -EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 87 -TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 87 -~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
+++.|++|++||+.+++....+ .|...|.+++|+| +++++++. +.
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~V~~v~fspdg~~l~s~s~-~~ 198 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEI-------------------------------ETRGEVKDLHFSTDGKVVAYITG-SS 198 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEE-------------------------------ECSSCCCEEEECTTSSEEEEECS-SC
T ss_pred EECCCCCEEEEeECCCCcEEEEe-------------------------------CCCCceEEEEEccCCceEEeccc-ee
Confidence 5557999999999987654433 5667899999999 67777774 55
Q ss_pred EEEEEcCcchhhhh-ccccccccEEEEEEecCC-eEEEEeCCC----eEEEEEccccccccccccceeeeeEeeccccce
Q 038568 164 FKIWNASNYKCLES-VNKAHEDAVNAVVVSDNG-VVYTGSADG----RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 164 i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
+.+|+..+++.+.. ....|...+.+++|+|++ .+++++.|+ .+++|++. ...........+.+|..+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK------SGNTSVLRSKQVTNRFKGI 272 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE------TTEEEEEEEEEEESSCSCE
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc------cceecceeeeeecCCCCCe
Confidence 77777776665432 225688899999999999 588888777 68888876 3222333456677899999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
++++|+|+|++|++|+.|+.|+|||+++++.+ ...+.+|...|++++|+|+ +|++|+.|++|+||++...
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~--~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDLSMS--KIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEE--EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCCcEE--EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999987632 2235789999999999987 9999999999999999653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=251.22 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=199.2
Q ss_pred CCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|.+.|++++|+|+ . |++++.||.|++|++.......... . .......+.+|...|.+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~--~------------------~~~~~~~~~~h~~~v~~ 186 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS--G------------------ECQPDLRLRGHQKEGYG 186 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT--C------------------CCCCSEEEECCSSCCCC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc--c------------------cCCCcEEecCCCCCeEE
Confidence 9999999999997 3 9999999999999997631100000 0 00000122388999999
Q ss_pred EEEec--C-eEEEEecCCeEEEEEcCcchh-------hhhccccccccEEEEEEecC-C-eEEEEeCCCeEEEEEccccc
Q 038568 148 LVVKQ--G-LMYSVSWDRSFKIWNASNYKC-------LESVNKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 148 ~~~~~--~-~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
++|+| . +|++|+.||.|++||+.++.. ...+ ..|...|.+++|+|+ + .|++++.|+.|++||++..
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~- 264 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN- 264 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS-
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 99999 4 899999999999999987432 2333 578899999999994 4 6889999999999999821
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---e
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---L 291 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 291 (357)
. .......+..|...|++++|+|++. +|++|+.||.|++||+++... ....+.+|...|.++.|+++ +
T Consensus 265 -----~-~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 265 -----N-TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp -----C-SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTE
T ss_pred -----C-CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCE
Confidence 1 1235556678999999999999887 688999999999999997543 34566679999999999875 6
Q ss_pred EEEecCCCeEEEeeCCCCcc-----------eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENC-----------YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++.||.|++||+..... .+.+..+.+|...|++++|+|+++ .+|++++.||.|++|+
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~------~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP------WIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST------TEEEEEETTSEEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC------CEEEEEECCCCEEEeE
Confidence 99999999999999987321 256777889999999999999986 3799999999999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=244.52 Aligned_cols=245 Identities=15% Similarity=0.162 Sum_probs=197.0
Q ss_pred CccceeEEEEe-c----ceEEEeeCC-ceEEEeccCCcc-ccceeccccCCCCceEEEEEe------cCc--eEEeecCC
Q 038568 28 HHMIISCLAVH-N----SLLYAASLN-EINVFDLISDYS-HVDTFSNDLSSSGSVKSITFH------ITK--IFTAHQDC 92 (357)
Q Consensus 28 h~~~i~~~~~s-~----~~l~t~~~d-~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~------~~~--l~~~~~d~ 92 (357)
|...|++++|+ . ++|++|+.| .|++||+ .+++ .+..+.+ |...|.+++|. |++ |++++.|+
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL-EAPEMPVYSVKG---HKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT-TSCSSCSEEECC---CSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC-CCCCccEEEEEe---cccceEEEeeccccccCCCccEEEEEeCCC
Confidence 99999999998 3 899999999 9999999 7766 8888887 99999999764 554 99999999
Q ss_pred eEEEEecCCcc-ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE----Eec--CeEEEEecCCeEE
Q 038568 93 KIRVWKITASR-QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV----VKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 93 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~--~~l~~~~~dg~i~ 165 (357)
.|++||+.+++ ....+..... .+...+.+++ |++ .++++++.||.|+
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQG--------------------------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIK 193 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTT--------------------------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEE
T ss_pred eEEEEeCCCCCCcceeccccCC--------------------------CCCCceEEEEEEeccCCCCCEEEEEccCCeEE
Confidence 99999999876 3333322110 2244788888 555 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEec---CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSD---NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
+||+++++.... ..+...+.+++|+| ++ .+++++.||.|++||++..... .......+..|...|++++
T Consensus 194 i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~v~~~~ 266 (357)
T 3i2n_A 194 LFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-----KGFASVSEKAHKSTVWQVR 266 (357)
T ss_dssp EEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-----TEEEEEEEECCSSCEEEEE
T ss_pred EEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-----cceeeeccCCCcCCEEEEE
Confidence 999998887544 47889999999998 66 6999999999999999822110 1111224458999999999
Q ss_pred EecCCC-EEEEEecCCeEEEEecccCCce----------------eeeeeccCCccceEEEeecCc--eEE-EecCCCeE
Q 038568 242 LNGDGS-LLFSGGCDRWIVVWERERDHRM----------------VFAEALWGHTGALLCLINVGD--LLA-SGSADRTV 301 (357)
Q Consensus 242 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~--~l~-~~~~dg~i 301 (357)
|+|+++ +|++++.||.|++||++..... .....+.+|...|.+++|+++ +|+ +++.||.|
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 999998 8999999999999999865433 356677889999999999887 676 89999999
Q ss_pred EEeeCCCC
Q 038568 302 RIWQRGKE 309 (357)
Q Consensus 302 ~vw~~~~~ 309 (357)
++||+.+.
T Consensus 347 ~iw~~~~~ 354 (357)
T 3i2n_A 347 RVLIVTKL 354 (357)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 99999875
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=249.29 Aligned_cols=245 Identities=20% Similarity=0.326 Sum_probs=203.1
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCC----------ccccceeccccCCCCceEEEEEecCc---eEEeec
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISD----------YSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQ 90 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~----------~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~ 90 (357)
|.+.|++++|+ +++||+++.| .|++|++ .. .+.+..+.+ |...|.+++|+|++ |++++.
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~-~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDY-TKHPSKPEPSGECQPDLRLRG---HQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEG-GGSCSSCCTTCCCCCSEEEEC---CSSCCCCEEECTTSTTEEEEECT
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEEC-CCcccccCccccCCCcEEecC---CCCCeEEEEeCCCCCCeEEEEeC
Confidence 99999999999 4699999999 9999999 65 567777777 99999999999874 999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIW 167 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw 167 (357)
||.|++|++..+......... ...+..|...|.+++|+| .+|++++.||.|++|
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~-----------------------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDA-----------------------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEEC-----------------------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCeEEEEeCCCCCCCCceecc-----------------------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 999999999874321111000 012237889999999998 789999999999999
Q ss_pred EcCcc---hhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 168 NASNY---KCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 168 d~~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
|++++ +.+..+ ..|...|++++|+|++ .+++|+.||.|++||++. ...++..+..|...|.+++|
T Consensus 260 d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---------~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 260 DTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---------LKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp ETTCSCSSSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---------TTSCSEEEECCSSCEEEEEE
T ss_pred ECCCCCCCcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---------CCCCeEEeecCCCCEEEEEE
Confidence 99987 455566 6889999999999988 488999999999999982 13456777889999999999
Q ss_pred ecCCC-EEEEEecCCeEEEEecccCCc-----------eeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCC
Q 038568 243 NGDGS-LLFSGGCDRWIVVWERERDHR-----------MVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRG 307 (357)
Q Consensus 243 ~~~~~-~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~ 307 (357)
+|+++ +|++++.|+.|++||+..... ......+.+|...|.+++|+++ +|++++.||.|++|++.
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 99885 799999999999999987321 1355667789999999999887 89999999999999997
Q ss_pred CC
Q 038568 308 KE 309 (357)
Q Consensus 308 ~~ 309 (357)
..
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=227.27 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=203.2
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--c---ceEEEeeCCceEEEeccCCc---cccceeccccCCCCceEEEEEe
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--N---SLLYAASLNEINVFDLISDY---SHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~---~~l~t~~~d~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
++-..|.+..|+.+.|. -.-.+.++-|- + --+++++...|++|+. .+. +.++++.. |+.+|..+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~-~~~~~~~~~~~~~~---~~~~v~~~~~~ 95 (356)
T 2w18_A 21 NPGNLQLVSELKNPSGS-CSVDVSAMFWERAGCKEPCIITACEDVVSLWKA-LDAWQWEKLYTWHF---AEVPVLQIVPV 95 (356)
T ss_dssp ---CEEEEEEECCCCSS-CEEEEEEEEEC----CEEEEEEEESSEEEEEEE-SSSSBEEEEEEEEC---CSSCEEEECCC
T ss_pred CcceeeeeehhcCCCCC-eEEEEeeeeeccCCCCccEEEEeccceEEEccc-CCCccceeeEEEec---cCceeEEEEEc
Confidence 34467788888864441 12235555554 2 3688888889999999 777 78888887 99999999999
Q ss_pred cCc--eEEeec-C-CeEEEEecCCccc----eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecC
Q 038568 82 ITK--IFTAHQ-D-CKIRVWKITASRQ----HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQG 153 (357)
Q Consensus 82 ~~~--l~~~~~-d-~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 153 (357)
||. |++... . ..-.++-+.-... .+.+.. .+|...|.++ ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s----------------------------~g~~~~v~~l--~~g 145 (356)
T 2w18_A 96 PDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK----------------------------SGNIKAVLGL--TKR 145 (356)
T ss_dssp TTCCSCEEEEECSSSEEEEEEECC------CCEEEEE----------------------------EEEEEEEEEE--TTT
T ss_pred CcccceeeeeeccccccceEEEEECCCccccccEEEe----------------------------CCCeEEEEec--CCC
Confidence 974 333221 1 1111111111000 011000 1444445544 335
Q ss_pred eEEEEe---cCCeEEEEEcC-cchhhhhccccccccEEEEEEec---CC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 154 LMYSVS---WDRSFKIWNAS-NYKCLESVNKAHEDAVNAVVVSD---NG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 154 ~l~~~~---~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.++..+ .|+.|++|++. +++.+..+ ..|...+..++|++ ++ .|++++.|++|++||++ ..+
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~----------TGk 214 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK----------TGQ 214 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT----------TCC
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC----------CCc
Confidence 555554 49999999994 47777776 78888999999998 44 69999999999999998 456
Q ss_pred eeeEeeccc---cceeEEEEecCCCEE------------EEEecCCeEEEEecccCCceeeee--eccCCccceEEEeec
Q 038568 226 LVTTLVKHR---STVNALALNGDGSLL------------FSGGCDRWIVVWERERDHRMVFAE--ALWGHTGALLCLINV 288 (357)
Q Consensus 226 ~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~ 288 (357)
.+..+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+.... ...+|.....+..++
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s 294 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK 294 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC
Confidence 667776544 357778999999876 567889999999999887543221 124677667777777
Q ss_pred CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceE-EEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK-SLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 289 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.++++++.|++|+|||+.++ +++..+.+|...+. .++|+|+++ +|++|+.|++|||||
T Consensus 295 g~~lASgS~DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~-------~LaSGS~D~TIklWd 354 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDS-------HLLAGQKDGNIFVYH 354 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSS-------EEEEECTTSCEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCC-------EEEEEECCCcEEEec
Confidence 779999999999999999998 77788888987655 689999999 999999999999997
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=269.61 Aligned_cols=248 Identities=20% Similarity=0.286 Sum_probs=202.9
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
..+.+ |.+.|++++|+|++ |++|+.||.|++||+..+.. .....+ .+
T Consensus 3 ~~l~g---H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l---------------------------~~ 51 (753)
T 3jro_A 3 VIANA---HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTL---------------------------TG 51 (753)
T ss_dssp --------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEE---------------------------CC
T ss_pred eeccc---CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceec---------------------------cC
Confidence 34566 99999999999987 99999999999999974332 122222 28
Q ss_pred ccccEEEEEEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecC--C-eEEEEeCCCeEEEEEc
Q 038568 141 HWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDN--G-VVYTGSADGRIRVWER 211 (357)
Q Consensus 141 ~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~ 211 (357)
|...|.+++|++ +++++|+.||.|++||+.+++ .+..+ ..|...|.+++|+|+ + .+++|+.||.|++||+
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 999999999985 689999999999999999876 55555 679999999999998 6 6999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEec-------------CCCEEEEEecCCeEEEEecccCCce-eeeeeccC
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-------------DGSLLFSGGCDRWIVVWERERDHRM-VFAEALWG 277 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~ 277 (357)
+. . .......+..|...|.+++|+| ++.++++|+.||.|++||++++... .....+.+
T Consensus 131 ~~------~--~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 202 (753)
T 3jro_A 131 KE------N--GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (753)
T ss_dssp CS------S--SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred ec------C--CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence 82 1 1223445678999999999999 5899999999999999999876533 34566778
Q ss_pred CccceEEEeecC-----ceEEEecCCCeEEEeeCCCCcce--eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 278 HTGALLCLINVG-----DLLASGSADRTVRIWQRGKENCY--RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 278 ~~~~v~~~~~~~-----~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
|...|.+++|+| .+|++++.||.|++||+++++.. ..+.....|...|++++|+|+++ +|++|+.|
T Consensus 203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-------~l~s~s~D 275 (753)
T 3jro_A 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALSGGD 275 (753)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-------CEEEECSS
T ss_pred CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-------EEEEEcCC
Confidence 999999999985 48999999999999999886321 23344556889999999999998 99999999
Q ss_pred CeEEecC
Q 038568 351 GEIKVWD 357 (357)
Q Consensus 351 g~v~~wd 357 (357)
|.|++||
T Consensus 276 g~I~vwd 282 (753)
T 3jro_A 276 NKVTLWK 282 (753)
T ss_dssp SCEECCB
T ss_pred CEEEEEe
Confidence 9999997
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=233.96 Aligned_cols=242 Identities=21% Similarity=0.287 Sum_probs=203.4
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc---cccceeccccCCCCceEEEEEecCce
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY---SHVDTFSNDLSSSGSVKSITFHITKI 85 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~l 85 (357)
...+....+.. |...|.+++|+ +++|++|+.| .|++|++ ... +.+..+.+ |...|.+++|.++.+
T Consensus 47 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~-~~~~~~~~~~~~~~---~~~~i~~~~~~~~~l 117 (313)
T 3odt_A 47 DDQWLGTVVYT-----GQGFLNSVCYDSEKELLLFGGKDTMINGVPL-FATSGEDPLYTLIG---HQGNVCSLSFQDGVV 117 (313)
T ss_dssp SSSEEEEEEEE-----CSSCEEEEEEETTTTEEEEEETTSCEEEEET-TCCTTSCC-CEECC---CSSCEEEEEEETTEE
T ss_pred CCCEEEEEeec-----CCccEEEEEECCCCCEEEEecCCCeEEEEEe-eecCCCCcccchhh---cccCEEEEEecCCEE
Confidence 34556666665 99999999999 8999999999 9999998 443 45666766 999999999977779
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDR 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg 162 (357)
++++.|+.|++|| .++....+ ..|...+.++.+.+ +++++++.||
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVYNL------------------------------QAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEEEE------------------------------ECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCEEEEc--CCcEEEec------------------------------ccCCCceeEEEEccCCCCEEEEEECCC
Confidence 9999999999999 23222222 27889999999976 8999999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
.|++||. .+.+..+...+...+.+++|+|++.+++++.|+.|++||++ ..+.+..+..|...|.+++|
T Consensus 166 ~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 166 TIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH----------TGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp CEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT----------TCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC----------chhhhhhhhcCCceEEEEEE
Confidence 9999994 44555553448999999999999999999999999999998 45677788889999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
+|++ .|++++.||.|++||+++++ ....+..|...+.+++|+++ .+++++.||.|++||+++++
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred ecCC-CEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 9999 58999999999999999887 44555678889999999887 67889999999999999863
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=242.65 Aligned_cols=230 Identities=12% Similarity=0.059 Sum_probs=164.6
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----------Ce
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----------GL 154 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~ 154 (357)
|++++.|++|++||.+.++....... ..+.+|.+.|.+++|+| ++
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~-------------------------~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVL-------------------------GGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEE-------------------------CTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeee-------------------------cccCCCCCceEEEEEccccccccCCCCCE
Confidence 89999999999999987754322111 22349999999999985 58
Q ss_pred EEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccccccc----------
Q 038568 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKS---------- 222 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~---------- 222 (357)
|++++.|++|++||++++.++..+ ..|...+.+++|+|++ +|++++.|+.|++||++..........
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~ 237 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL 237 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE
T ss_pred EEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE
Confidence 999999999999999888777776 6888999999999987 599999999999999985432211100
Q ss_pred -----ceeeeeEeeccccceeEEEEe-cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE------------
Q 038568 223 -----RHMLVTTLVKHRSTVNALALN-GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC------------ 284 (357)
Q Consensus 223 -----~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~------------ 284 (357)
.........+|...+.++.|+ |+++.|++++.|+++++||+........ +..|...+..
T Consensus 238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE---ISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECS
T ss_pred ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce---EeeecCccccEEEccccccccc
Confidence 001112234677889999997 6999999999999999999986653222 2222222211
Q ss_pred ------EeecC--c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE
Q 038568 285 ------LINVG--D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353 (357)
Q Consensus 285 ------~~~~~--~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v 353 (357)
..+.+ + ++++|+.||.|++||+.++ +....+.+|..+|++++|+|+++ +||+++.||.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~-------~LA~as~~Gv~ 383 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGS-------HLAIATEGSVL 383 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSS-------EEEEEESSEEE
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCC-------EEEEEeCCCeE
Confidence 11222 2 6788899999999999987 44555667889999999999999 99999988763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=239.66 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=194.6
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+|.+.|++++|+|++ |++++.|+.|++|++.+++........ ..|...|.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~---------------------------~~~~~~v~~ 61 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS---------------------------LRYKHPLLC 61 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE---------------------------EECSSCEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee---------------------------eecCCceEE
Confidence 399999999999986 999999999999999877622222211 278899999
Q ss_pred EEEec--C-eEEEEecCCeEEEEEc-Ccchhhhhcccc--ccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccc
Q 038568 148 LVVKQ--G-LMYSVSWDRSFKIWNA-SNYKCLESVNKA--HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 148 ~~~~~--~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 221 (357)
++|+| + +|++++.||.|++||+ .+++. ..+ .. |...|.+++|+|...+++++.|+.|++||++....... .
T Consensus 62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~ 138 (342)
T 1yfq_A 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI-A 138 (342)
T ss_dssp EEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-E
T ss_pred EEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccc-c
Confidence 99998 7 8999999999999999 77655 444 56 99999999999944799999999999999972100000 0
Q ss_pred cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc-CCceeeeeeccCCccceEEEeecC-c--eEEEecC
Q 038568 222 SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER-DHRMVFAEALWGHTGALLCLINVG-D--LLASGSA 297 (357)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~~~~ 297 (357)
...+++..+. |...|.+++|+|++ +++++.|+.|++||+++ .... .......|...+.+++|++ + ++++++.
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-ceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 0023333444 78899999999986 99999999999999997 5432 2233446788899999987 5 9999999
Q ss_pred CCeEEEeeCCCCc---ceeeeeeecCCcC---------ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 298 DRTVRIWQRGKEN---CYRCMAFLEGHEK---------PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 298 dg~i~vw~~~~~~---~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||.|++|+++... ..+....+..|.. +|++++|+|+++ +|++++.||.|++||
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------FLYTAGSDGIISCWN 279 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------CEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-------EEEEecCCceEEEEc
Confidence 9999999998750 0134455666654 999999999998 999999999999997
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=250.84 Aligned_cols=247 Identities=12% Similarity=0.179 Sum_probs=187.1
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc------
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW------ 142 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (357)
+.+.|++++|+|++ |++|+.||.|++||+.+++........ ... ....+.+|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~--------------~~~-----~~~~~~~h~~~~~~~ 87 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG--------------EYN-----VYSTFQSHEPEFDYL 87 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC--------------CEE-----EEEEEECCCCEEEGG
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc--------------cee-----Eeccccccccccccc
Confidence 78899999999987 999999999999999876521100000 000 001122666
Q ss_pred ------ccEEEEEEec----CeEEEEecCCeEEEEEcCcchhh-------------------------------------
Q 038568 143 ------DAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCL------------------------------------- 175 (357)
Q Consensus 143 ------~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~------------------------------------- 175 (357)
..|.+++|+| ..|++++.|+.|++||+.+++..
T Consensus 88 ~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (447)
T 3dw8_B 88 KSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEAS 167 (447)
T ss_dssp GTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEE
T ss_pred ccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeecc
Confidence 8899999999 37999999999999999764431
Q ss_pred --hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeee-------EeeccccceeEEEEecC
Q 038568 176 --ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT-------TLVKHRSTVNALALNGD 245 (357)
Q Consensus 176 --~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~ 245 (357)
..+...|...|.+++|+|++ .|++| .|+.|++||++. ...... .+..|...|.+++|+|+
T Consensus 168 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 168 PRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI---------TDRSFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp EEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE---------EEEEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred ceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC---------CCceeeeeecccccccccCcceEEEEECCC
Confidence 12225789999999999998 57777 899999999972 111222 35678999999999999
Q ss_pred C-CEEEEEecCCeEEEEecccCCce-eeeeeccCCcc------------ceEEEeecCc--eEEEecCCCeEEEeeCCC-
Q 038568 246 G-SLLFSGGCDRWIVVWERERDHRM-VFAEALWGHTG------------ALLCLINVGD--LLASGSADRTVRIWQRGK- 308 (357)
Q Consensus 246 ~-~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~------------~v~~~~~~~~--~l~~~~~dg~i~vw~~~~- 308 (357)
+ ++|++|+.||.|++||+++++.. .....+.+|.. .|.+++|+++ +|++++. +.|++||+++
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC
Confidence 8 99999999999999999987631 11344555664 8999999877 8899888 9999999987
Q ss_pred CcceeeeeeecCCcCc---------------eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 309 ENCYRCMAFLEGHEKP---------------VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ +++..+.+|... +..++|+|+++ +|++|+.||.|++||
T Consensus 317 ~---~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-------~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 317 N---RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-------VVMTGSYNNFFRMFD 370 (447)
T ss_dssp S---SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-------EEEEECSTTEEEEEE
T ss_pred c---cccceeeccccccccccccccccccccceEEEECCCCC-------EEEEeccCCEEEEEE
Confidence 4 556677777542 33499999998 999999999999997
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=229.32 Aligned_cols=249 Identities=21% Similarity=0.256 Sum_probs=205.4
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEE
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFT 87 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 87 (357)
..++++++.++. .+ |...|++++|+ +++||+|+.| .|++||+ ++++.+..+.+ |...+.++.+.+..+++
T Consensus 52 ~~tg~~~~~~~~-~~--~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~-~~~~~~~~~~~---h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 52 ASSGDILQLLQM-EQ--PGEYISSVAWIKEGNYLAVGTSSAEVQLWDV-QQQKRLRNMTS---HSARVGSLSWNSYILSS 124 (318)
T ss_dssp TTTCCEEEEEEC-CS--TTCCEEEEEECTTSSEEEEEETTSEEEEEET-TTTEEEEEEEC---CSSCEEEEEEETTEEEE
T ss_pred CCCCCEEEEEEe-cC--CCCeEEEEEECCCCCEEEEEECCCcEEEeec-CCceeEEEecC---ccceEEEeecCCCEEEE
Confidence 345666666652 23 88999999999 8999999999 9999999 99999999998 99999999998888999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.++.+++|+........... .+|...+..+.+.+ .++++++.||.|+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 125 GSRSGHIHHHDVRVAEHHVATL-----------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVN 175 (318)
T ss_dssp EETTSEEEEEETTSSSCEEEEE-----------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EecCCceEeeecCCCceeEEEE-----------------------------cCccCceEEEEEcCCCCEEEEEecCccee
Confidence 9999999999988765332211 28889999999999 8999999999999
Q ss_pred EEEcCcchhhhhc---cccccccEEEEEEecCC--e--EEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 166 IWNASNYKCLESV---NKAHEDAVNAVVVSDNG--V--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 166 iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
+||+++++..... ...+...|.++.+.|++ . +++++.++.|++||.+ ..... ....+...+.
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----------~~~~~-~~~~~~~~v~ 244 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----------SGACL-SAVDAHSQVC 244 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----------TCCEE-EEEECSSCEE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----------ccccc-ccccceeeee
Confidence 9999987654332 14577889999999876 2 4567789999999987 22222 3344677899
Q ss_pred EEEEecCCCEEEEEe--cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 239 ALALNGDGSLLFSGG--CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
.+.|+|+++.+++++ .|+.|++||+++++ .+..+.+|...|.+++|+++ +|++|+.||+|+|||+.+.
T Consensus 245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 245 SILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999887654 79999999999887 45677899999999999876 9999999999999999764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=235.28 Aligned_cols=255 Identities=17% Similarity=0.207 Sum_probs=212.6
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
....+++..+.+ |.+.|++++|+ +++|++++.| .|++||+ .+++.+..+. +...|.+++|+|++ +
T Consensus 61 ~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~----~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 61 SLNGERLGTLDG-----HTGTIWSIDVDCFTKYCVTGSADYSIKLWDV-SNGQCVATWK----SPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp TTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTTEEEEEET-TTCCEEEEEE----CSSCEEEEEECTTSSEE
T ss_pred CCCchhhhhhhh-----cCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEEEee----cCCCeEEEEEccCCCEE
Confidence 345667777776 99999999999 8999999999 9999999 8888888887 88999999999987 8
Q ss_pred EEeecC-----CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc--cEEEEEEec--CeEE
Q 038568 86 FTAHQD-----CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD--AVSDLVVKQ--GLMY 156 (357)
Q Consensus 86 ~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~l~ 156 (357)
++++.+ +.|++||+........+..... .....+..|.. .+.+++|+| ++++
T Consensus 131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (369)
T 3zwl_B 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSE-------------------EPIHKIITHEGLDAATVAGWSTKGKYII 191 (369)
T ss_dssp EEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-------------------SCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred EEecCCccCCCCEEEEEEecCCccceeeccccc-------------------ceeeeccCCcCccceeEEEEcCCCCEEE
Confidence 888888 9999999987654433322111 00111124445 899999999 8999
Q ss_pred EEecCCeEEEEEcCc-chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 157 SVSWDRSFKIWNASN-YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 157 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
+++.||.|++||+++ .+.+..+ ..|...|.+++|+|++ +|++++.|+.|++||++ .......+. +.
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~----------~~~~~~~~~-~~ 259 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS----------TLQVLKKYE-TD 259 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------TCCEEEEEE-CS
T ss_pred EEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECC----------CCceeeeec-CC
Confidence 999999999999998 6677777 7889999999999999 69999999999999998 334444444 77
Q ss_pred cceeEEEEecCCCEEEEEecCC--------------eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 235 STVNALALNGDGSLLFSGGCDR--------------WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
..+.+++|+|+++++++++.++ .+++||..+++ ....+.+|...|.+++|+++ +|++++.|
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---EIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---chhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 8899999999999999999988 89999999887 44566789999999999876 99999999
Q ss_pred CeEEEeeCCCC
Q 038568 299 RTVRIWQRGKE 309 (357)
Q Consensus 299 g~i~vw~~~~~ 309 (357)
|.|++|+++++
T Consensus 337 g~v~iw~~~~~ 347 (369)
T 3zwl_B 337 GFIRLHHFEKS 347 (369)
T ss_dssp SEEEEEEECHH
T ss_pred CeEEEEECccc
Confidence 99999999865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=239.67 Aligned_cols=242 Identities=14% Similarity=0.199 Sum_probs=194.1
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-------cccceeccccCCCCceEEEEEecCc---eEEeecCCe
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-------SHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~ 93 (357)
|.+.|++++|+ +++|++|+.| .|+|||+ .++ +.+..+.+ |...|.+++|+|++ |++++.|+.
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~-~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI-PDGGLVLPLREPVITLEG---HTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEEC-CTTCCSSCBCSCSEEEEC---CSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc-cCCCCccccCCceEEecC---CCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 99999999997 7899999999 9999999 766 56777887 99999999999984 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
|++||+.+++....+.. ..|...|.+++|+| .+|++++.||.|++||+++
T Consensus 156 i~iwd~~~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGP----------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp EEEEETTTTEEEEEECT----------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCCccEEEec----------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 99999998765443310 17889999999999 8999999999999999999
Q ss_pred chhhhhcccccccc-EEEEEEecCCe-EEEE---eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 172 YKCLESVNKAHEDA-VNAVVVSDNGV-VYTG---SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 172 ~~~~~~~~~~~~~~-v~~~~~~~~~~-l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
++.+..+...|... +.++.|+|++. |++| +.|+.|++||++. ... ........+...+.+++|+|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~------~~~--~~~~~~~~~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH------LEE--PLSLQELDTSSGVLLPFFDPDT 279 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB------CSS--CSEEEECCCCSSCEEEEEETTT
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc------ccC--CceEEeccCCCceeEEEEcCCC
Confidence 88887763455554 89999999995 6666 6899999999982 111 1111222467789999999999
Q ss_pred CEEEE-EecCCeEEEEecccCCc-eeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 247 SLLFS-GGCDRWIVVWERERDHR-MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 247 ~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
++|++ |+.||.|++||+.+++. ...+..+. |...+.+++|+++....++.++.+++|++.++.
T Consensus 280 ~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 280 NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred CEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccceecceeEEEEEcCCCc
Confidence 98864 55799999999998774 33333333 678899999999833334567799999998763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=231.55 Aligned_cols=250 Identities=16% Similarity=0.246 Sum_probs=195.9
Q ss_pred EeccCCccccceeccccCCCCceEEEEEecC---c--eEEeecCCeEEEEecCC-ccceeeeeecCccccceeeeecCCC
Q 038568 53 FDLISDYSHVDTFSNDLSSSGSVKSITFHIT---K--IFTAHQDCKIRVWKITA-SRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 53 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~--l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
|+. ...+.+..+.+ |.+.|++++|+|+ + |++++.||.|++||+.+ +......
T Consensus 24 ~~~-~~~~~~~~~~~---h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------ 81 (368)
T 3mmy_A 24 DNH-NPMKDIEVTSS---PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA------------------ 81 (368)
T ss_dssp CSS-CTTCCEECSSC---CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE------------------
T ss_pred CCC-CCcceeEeccC---CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE------------------
Confidence 344 45566667776 9999999999997 3 99999999999999987 3322111
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEE--ecCC-eEEEEe
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV--SDNG-VVYTGS 201 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~ 201 (357)
+.+|...|.+++|+| ++|++++.||.|++||+++++.+.. ..|...|.+++| +|++ .|++++
T Consensus 82 -----------~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~ 148 (368)
T 3mmy_A 82 -----------QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGS 148 (368)
T ss_dssp -----------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEE
T ss_pred -----------eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEcc
Confidence 127899999999999 7999999999999999999887764 479999999999 7888 599999
Q ss_pred CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee-eeeccCCcc
Q 038568 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF-AEALWGHTG 280 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~ 280 (357)
.|+.|++||++ ..+.+..+..+ ..+.++.+.+ ..+++++.++.+++|+++....... ......+..
T Consensus 149 ~dg~i~vwd~~----------~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 215 (368)
T 3mmy_A 149 WDKTLKFWDTR----------SSNPMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH 215 (368)
T ss_dssp TTSEEEEECSS----------CSSCSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE
T ss_pred CCCcEEEEECC----------CCcEEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCC
Confidence 99999999998 33444555544 3566666654 4888999999999999987653221 122223444
Q ss_pred ceEEEeecCc----eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC------------ceEEEEEeeCCCCCCCCeEEE
Q 038568 281 ALLCLINVGD----LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK------------PVKSLVAISSSSSASNGIVSI 344 (357)
Q Consensus 281 ~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~~~~~~~~~~~l 344 (357)
.+.++.+.+. .+++++.||.|++|+++.......+..+.+|.. +|++++|+|+++ +|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l 288 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-------TL 288 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-------CE
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-------EE
Confidence 4555555444 499999999999999998754455667777776 799999999998 99
Q ss_pred EEcCCCCeEEecC
Q 038568 345 GSGSLNGEIKVWD 357 (357)
Q Consensus 345 ~s~~~dg~v~~wd 357 (357)
++++.||.|++||
T Consensus 289 ~s~~~dg~i~iwd 301 (368)
T 3mmy_A 289 ATVGSDGRFSFWD 301 (368)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEccCCeEEEEE
Confidence 9999999999997
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=231.83 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=186.5
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-----ceEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-----KIFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~d~~i~vwd 98 (357)
|...|.+++|+ +++|++++.| .|++||+ .+++....+. +...+.++.|++. .+++++.|+.|++||
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-NTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEET-TTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC-CCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 99999999998 6799999999 9999999 8888888776 8889999999974 299999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEecCCeEEEEEcCcch-h
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVSWDRSFKIWNASNYK-C 174 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~-~ 174 (357)
+.+++....+. .|...|.+++|+| . ++++++.||.|++||++++. +
T Consensus 173 ~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 173 LKSGSCSHILQ------------------------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp SSSSCCCEEEC------------------------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred CCCcceeeeec------------------------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 98876544332 7889999999999 4 58999999999999998754 1
Q ss_pred hhhc--------------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE-eecccccee
Q 038568 175 LESV--------------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT-LVKHRSTVN 238 (357)
Q Consensus 175 ~~~~--------------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 238 (357)
+..+ ...|...|.+++|+|++ +|++++.|+.|++||++..... ...... .......+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~ 296 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT------LVNYGKVCNNSKKGLK 296 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC------CCCCCCCCCCCSSCCC
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc------eeccccccccccccce
Confidence 1111 14688899999999998 6999999999999999832211 110000 011112222
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeee
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
.......+..+++++.|+.|++||+.+++ ....+.+|...|.+++|+++ +|++++.||.|++||+++.+ .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---~~~ 370 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGE---QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE---PVP 370 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCC---EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCc---ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC---ccC
Confidence 22223345567777889999999999887 45567789999999999876 89999999999999999873 333
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+. ....+.+... ..+.+.+.|+.+++|+
T Consensus 371 ~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 371 DDDETT---TKSQLNPAFE------DAWSSSDEEGGTSAWS 402 (408)
T ss_dssp -----------------------------------------
T ss_pred CCCceE---eccccccccc------eeecccCccCceeecC
Confidence 322222 1223333222 2566778899999995
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=230.01 Aligned_cols=275 Identities=13% Similarity=0.149 Sum_probs=211.4
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccc-----eeccccCCCCceEEEEEecCc--
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVD-----TFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+.+..+. +...+.+++|+ +.++++++.+ .|++||+ .+++... .+.+ |...|.+++|++++
T Consensus 114 ~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 114 RFISRFK------TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKK---KLGFVETISIPEHNEL 183 (433)
T ss_dssp EEEEEEE------CSSCBCCCEESSSSEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHT---TCCEEEEEEEGGGTEE
T ss_pred eEEEEEc------CCCCceEEEEeCCCeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccc---cCCceeEEEEcCCCEE
Confidence 4555555 33456789998 6677777778 9999999 8777766 3444 89999999999877
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEecC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~d 161 (357)
+++++.|+.|++||+++++....+. .|...+.+++|+| +.+ ++++.|
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVD------------------------------LTGKWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE------------------------------CSSSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCEEEEEECCCceEEEEEc------------------------------CCCCCeeEEEEcCCCCEEEEEecCC
Confidence 8899999999999998876544332 5678899999999 555 455589
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEe--------CCCeEEEEEccccccccccccceeeeeEeec
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGS--------ADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+.|++||+++++.+..+ .....+.+++|+|++ .+++++ .|+.|++||++ ..+..... .
T Consensus 234 ~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~----------~~~~~~~~-~ 300 (433)
T 3bws_A 234 EDISVIDRKTKLEIRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD----------KEKLIDTI-G 300 (433)
T ss_dssp TEEEEEETTTTEEEEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT----------TTEEEEEE-E
T ss_pred CcEEEEECCCCcEEEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC----------CCcEEeec-c
Confidence 99999999998887776 334569999999999 577776 48899999997 22233332 4
Q ss_pred cccceeEEEEecCCCEE-EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC------------
Q 038568 233 HRSTVNALALNGDGSLL-FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA------------ 297 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~------------ 297 (357)
+...+.+++|+|+++.+ ++++.|+.|++||+++++.... + .+...+.+++++++ ++++++.
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~---~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS---I-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE---E-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE---e-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 55678899999999755 6668899999999997764322 2 25667888888876 6776665
Q ss_pred ---CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 298 ---DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 298 ---dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
||.|++||+.++ +.+..+.. ...+.+++|+|+++ +|++++ .|+.|++||
T Consensus 377 g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~-------~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 377 GLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNR-------YLVISDFLDHQIRVYR 429 (433)
T ss_dssp CSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSC-------EEEEEETTTTEEEEEE
T ss_pred cccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCC-------EEEEEECCCCeEEEEE
Confidence 579999999987 44555554 45789999999998 777665 599999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=234.35 Aligned_cols=268 Identities=11% Similarity=0.097 Sum_probs=194.0
Q ss_pred CCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCcccc---c-----------eeeeecCC-CeE-------
Q 038568 72 SGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKD---R-----------LIRSVLPN-NYV------- 128 (357)
Q Consensus 72 ~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~-~~~------- 128 (357)
..++.+++|++++ ++.++.++.|++||+.+++....+........ . ......++ ...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4578899999998 66677789999999998873222222211100 0 00000000 000
Q ss_pred -----EEecccccccccccccEEEEEEec--CeE-EEEecCCeEEEEEcC--cchhhhhccc-cccccEEEEEEecCC-e
Q 038568 129 -----TVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRSFKIWNAS--NYKCLESVNK-AHEDAVNAVVVSDNG-V 196 (357)
Q Consensus 129 -----~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~-~ 196 (357)
............|...|.+++|+| ++| ++++.||.|++||+. +++.+..+.. .+...|.+++|+|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 000000112236777899999999 664 899999999999999 7887777621 567889999999998 6
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC---CCEEEEEecCCeEEEEecccCCceeeee
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD---GSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
|++++.+|.|++|++.. ..........+.+|...|.+++|+|+ +++|++++.|+.|++||++++.... .
T Consensus 164 l~~~~~~g~v~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~ 235 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINS------IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--K 235 (450)
T ss_dssp EEEEETTSEEEEEETTS------CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE--E
T ss_pred EEEEeCCCcEEEEecCC------cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee--e
Confidence 99999999999999872 21111133466789999999999999 9999999999999999999876432 2
Q ss_pred eccCCccceEEEeec-CceEEEecCCCeEEEeeCCCCcceeeeeeec-------------------------CCcCceEE
Q 038568 274 ALWGHTGALLCLINV-GDLLASGSADRTVRIWQRGKENCYRCMAFLE-------------------------GHEKPVKS 327 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------------------------~h~~~v~~ 327 (357)
.+.+|...|.+++|+ +++|++++.|+.|++||+++++. +..+. .....|.+
T Consensus 236 ~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 236 WLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKN---LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp ECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCE---EEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcE---eeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 255899999999997 44999999999999999998843 33333 23457999
Q ss_pred EEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
++|+|+++ +|++++ .|+.|++||
T Consensus 313 i~~~~~~~-------~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 313 IIKSKNLP-------FVAFFVEATKCIIILE 336 (450)
T ss_dssp EEECSSSS-------EEEEEETTCSEEEEEE
T ss_pred EEEeCCCC-------EEEEEECCCCeEEEEE
Confidence 99999998 888887 899999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-31 Score=222.56 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=199.9
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
.++++++.| .|++||+ .+++.+..+.. | ..+.+++|+|++ + ++++.|+.|++||+.+++....+.
T Consensus 3 ~l~vs~~~d~~v~v~d~-~~~~~~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~------ 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDV-TSNKVTATIPV---G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------ 71 (391)
T ss_dssp EEEEEETTTTEEEEEET-TTTEEEEEEEC---S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------
T ss_pred EEEEEcCCCCEEEEEEC-CCCeEEEEeec---C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE------
Confidence 467788888 9999999 88888888874 4 458999999987 4 677799999999998886554432
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
+...+.+++|+| +++ ++++.++.|++||+.+++.+..+ .+...+.+++|+
T Consensus 72 -------------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s 124 (391)
T 1l0q_A 72 -------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALS 124 (391)
T ss_dssp -------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEEC
T ss_pred -------------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE--eCCCCcceEEEC
Confidence 233899999999 555 45556799999999998887776 345578999999
Q ss_pred cCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE-EEEecCCeEEEEecccCCce
Q 038568 193 DNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL-FSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 193 ~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~ 269 (357)
|++. + ++++.++.|++||++ ..+....+..+ ..+.+++|+|++++| ++++.++.|++||+++++..
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~----------~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTV----------TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETT----------TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCCCEEEEEECC----------CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 9984 5 688889999999987 33444555544 456899999999877 57778999999999987643
Q ss_pred eeeeeccCCccceEEEeecCc--eEEEec---CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEE
Q 038568 270 VFAEALWGHTGALLCLINVGD--LLASGS---ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSI 344 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l 344 (357)
... .+...+.+++++++ +|++++ .++.|++||+.++ +.+..+..|. .+.+++|+|+++ +|
T Consensus 194 ~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~-------~l 258 (391)
T 1l0q_A 194 DTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVGP-DPAGIAVTPDGK-------KV 258 (391)
T ss_dssp EEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEECCS-SEEEEEECTTSS-------EE
T ss_pred EEE----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEEEecCC-CccEEEEccCCC-------EE
Confidence 222 24557788888766 777776 6899999999987 4556666655 478999999997 55
Q ss_pred -EEcCCCCeEEecC
Q 038568 345 -GSGSLNGEIKVWD 357 (357)
Q Consensus 345 -~s~~~dg~v~~wd 357 (357)
++++.|+.|++||
T Consensus 259 ~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 259 YVALSFXNTVSVID 272 (391)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEE
Confidence 7889999999997
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=227.31 Aligned_cols=241 Identities=11% Similarity=0.122 Sum_probs=170.7
Q ss_pred EEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE
Q 038568 52 VFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129 (357)
Q Consensus 52 iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
||++ .+.+++..+.. |...|++++|+|++ |++|+.+ .+++|++...+.....
T Consensus 3 i~s~-~~~~~~~~~~~---h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~--------------------- 56 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENH---VSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQ--------------------- 56 (355)
T ss_dssp --------------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEE---------------------
T ss_pred cccc-cccCCcccccc---CCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeee---------------------
Confidence 5666 66667766776 99999999999998 6666655 5899998866433221
Q ss_pred EecccccccccccccEEEEEEec--CeE-EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeE
Q 038568 130 VRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRI 206 (357)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 206 (357)
+...+..+.+.+ +.+ ++++.|++|++||+.+++++..+ .+...|.++.++++..+++ .++.|
T Consensus 57 -----------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~--~~~~~v~~v~~~~~~~~~~--~~~~i 121 (355)
T 3vu4_A 57 -----------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI--KVDAPVKDLFLSREFIVVS--YGDVI 121 (355)
T ss_dssp -----------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE--ECSSCEEEEEECSSEEEEE--ETTEE
T ss_pred -----------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE--ECCCceEEEEEcCCEEEEE--EcCEE
Confidence 112355566665 555 67888899999999999988887 4677999999998754333 47899
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE--EecCCeEEEEecccCCce------------ee-
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS--GGCDRWIVVWERERDHRM------------VF- 271 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~------------~~- 271 (357)
++||+... .+.+..+.. +...+++++ .++++ |+.||.|++||++++... .+
T Consensus 122 ~i~d~~~~---------~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 122 SVFKFGNP---------WKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp EEEESSTT---------CCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------C
T ss_pred EEEECCCC---------ceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence 99999821 022222222 344566676 56666 588999999999875411 11
Q ss_pred eeeccCCccceEEEeecCc--eEEEecCCCe-EEEeeCCCCcceeeeeeec-C-CcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSADRT-VRIWQRGKENCYRCMAFLE-G-HEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
...+.+|...|.+++|+++ +|++|+.|++ |++||++++ +++..+. + |..+|++++|+|+++ +|++
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~~~-------~l~s 257 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTDGS-------KLAV 257 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTTSC-------EEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCCCC-------EEEE
Confidence 4567889999999999887 9999999998 999999987 5566676 5 999999999999998 9999
Q ss_pred cCCCCeEEecC
Q 038568 347 GSLNGEIKVWD 357 (357)
Q Consensus 347 ~~~dg~v~~wd 357 (357)
++.|++|++||
T Consensus 258 ~s~d~~v~iw~ 268 (355)
T 3vu4_A 258 VSDKWTLHVFE 268 (355)
T ss_dssp EETTCEEEEEE
T ss_pred EECCCEEEEEE
Confidence 99999999997
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=229.03 Aligned_cols=220 Identities=10% Similarity=0.009 Sum_probs=169.6
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
|++|+.||+|++||+.+++....+. ...|.++.++|. +++++.|++|
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~--------------------------------~~~v~~~~~~~~-~~s~s~D~~i 97 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT--------------------------------TPNPRTGGEHPA-IISRGPCNRL 97 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE--------------------------------EECCCTTCCCCS-EEEECSTTEE
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe--------------------------------cCCceeeeeCCc-eEEecCCCeE
Confidence 9999999999999999887655443 234556666777 8999999999
Q ss_pred EEEEcC---------cchhhhhccccccccEEEEEEec--CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe-e
Q 038568 165 KIWNAS---------NYKCLESVNKAHEDAVNAVVVSD--NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-V 231 (357)
Q Consensus 165 ~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~ 231 (357)
++|+.. +++.+..+...|...|.+++++| ++ ++++++.||.|++||++ ........ .
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~----------~~~~~~~~~~ 167 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE----------DDSQYIVHSA 167 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS----------SSCEEEEECC
T ss_pred EEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC----------CCcEEEEEec
Confidence 999765 34434444346668899999999 87 69999999999999998 22333333 3
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 232 KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
.+...+.+++|+|++.+|++|+.||.|++||+++++.. ...+.. |..+|.+++|+++ +|++++ |+.|++||+++
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC--CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC--ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 45567999999999999999999999999999988753 134455 9999999999887 888888 55999999998
Q ss_pred CcceeeeeeecCCcCceE--EEEEeeCCCCCCCCeEEEEEcCC-CCeEEecC
Q 038568 309 ENCYRCMAFLEGHEKPVK--SLVAISSSSSASNGIVSIGSGSL-NGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~~~l~s~~~-dg~v~~wd 357 (357)
++....+..+..|..++. +++|+|+++ +|++++. |+.|++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGK-------NMIAYSNESNSLTIYK 289 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSS-------EEEEEETTTTEEEEEE
T ss_pred CCcceeecccccccccccceEEEECCCCC-------EEEEecCCCCcEEEEE
Confidence 754444444444555555 699999998 9999887 99999995
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=234.64 Aligned_cols=249 Identities=10% Similarity=0.103 Sum_probs=191.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCC--CCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS--SGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|...|.+++|+ |++||+++.| .|+|||. +. .+..+.. ..+ ...|.+++|+|++ |++|+.||+|++||+.
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~-~~--~l~~l~~-~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKD-NK--MLTNLDS-KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEET-TE--EEEECCC-SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-Cc--eeeeccC-CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 78899999999 9999999999 9999997 54 4444431 101 2369999999998 9999999999999998
Q ss_pred Ccccee----eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhh
Q 038568 101 ASRQHQ----LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
++.... .+..+. ....+|...|.+++|+| . +++++.|++|++||+..++..
T Consensus 160 ~~~l~~~~~i~l~ti~-----------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 160 KNSENTPEFYFESSIR-----------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp CCTTTCCCCEEEEEEE-----------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSC
T ss_pred CCccccccceeeeeee-----------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccc
Confidence 865311 122211 00127889999999999 7 999999999999999887743
Q ss_pred ---hhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE--ecCCCEEE
Q 038568 176 ---ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL--NGDGSLLF 250 (357)
Q Consensus 176 ---~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~ 250 (357)
.++...|...|.+++|+ ++.|++++ ++.|++||+. .........+|...|..++| +|++..|+
T Consensus 216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~----------~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLK----------NYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETT----------TTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECC----------CCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 23424678899999999 55788887 6999999987 23332333379999999999 99999999
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
+++.||+ ++|..+. ++++++..++++.|+++++|+...+. +..+.+ ...|.+++|
T Consensus 284 ~a~edG~-klw~~d~-------------------~~~spd~~l~a~~d~~v~lW~~~g~~----l~~~~~-~~~I~~va~ 338 (588)
T 2j04_A 284 MSNKTSY-KVLLEDE-------------------LHVTADNIIAPYLEKKFKKWSTIWNE----FNNYET-TLVIHGISL 338 (588)
T ss_dssp ECSSCEE-EEEESSS-------------------EEEECCCSSHHHHHHHHHHTTTTTTS----SSSSCC-EEEEEEEEE
T ss_pred EEcCCCC-EEEeecc-------------------EEECCCceEEEEcCCEEEEEECCCCc----eeeecc-ceEEEEEEE
Confidence 9999999 9998871 34555533333349999999986542 334444 678999999
Q ss_pred eeCCCCCCCCeEEEEEcC
Q 038568 331 ISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~ 348 (357)
+|++. .+|+++
T Consensus 339 SPdG~-------~lA~~~ 349 (588)
T 2j04_A 339 SPDGY-------SIAIVY 349 (588)
T ss_dssp CTTSS-------EEEEEE
T ss_pred CCCCC-------EEEEEE
Confidence 99998 888876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=225.96 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=162.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc-----cceeccccCCCCceEEEEEec--------Cc--eEEee
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH-----VDTFSNDLSSSGSVKSITFHI--------TK--IFTAH 89 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~-----~~~~~~~~~~~~~v~~l~~~~--------~~--l~~~~ 89 (357)
|...+....++ +.+||+|+.| +|+|||. +.++. +..+.+ |.+.|++++|+| ++ |++++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~-~~~~~~~~~~~~~~~g---H~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIIT-KNETIITQHVLGGKSG---HHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEE-ETTEEEEEEEECTTTS---CSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEEC-CCCccceeeeecccCC---CCCceEEEEEccccccccCCCCCEEEEEE
Confidence 33333333444 6789999999 9999999 66543 334566 999999999997 43 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKI 166 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i 166 (357)
.|++|+|||+.++....... .|...+.+++|+| .+|++++.||+|++
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~------------------------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~ 213 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGY------------------------------PLSSPGISVQFRPSNPNQLIVGERNGNIRI 213 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEE------------------------------ECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CCCeEEEEECCCCceeeeec------------------------------CCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence 99999999998765433322 7888999999999 57999999999999
Q ss_pred EEcCcchhhhhc------------------------cccccccEEEEEEe-cCC-eEEEEeCCCeEEEEEcccccccccc
Q 038568 167 WNASNYKCLESV------------------------NKAHEDAVNAVVVS-DNG-VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 167 wd~~~~~~~~~~------------------------~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
||+++++..... ...|...+.++.|. +++ ++++++.|+.+++||+.........
T Consensus 214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence 999887643322 13466778889987 677 6999999999999998732211000
Q ss_pred cc---------ceeeeeEeeccccceeEEEEec--CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 221 KS---------RHMLVTTLVKHRSTVNALALNG--DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 221 ~~---------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
.. ..........+.. .....++| ++.++++|+.||.|++||+.+++.. ..+.+|..+|.+++|+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~---~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 294 SDSTMKLGPKNLLPNVQGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN---SIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp ----------CCSCSEEEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---EEEEECSSCEEEEEECT
T ss_pred eeecCccccEEEccccccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---EEecCCCCcEEEEEEcC
Confidence 00 0000111111122 22233444 4446778889999999999988743 34456888999999998
Q ss_pred c--eEEEecCCCeEEEeeCC
Q 038568 290 D--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~ 307 (357)
+ +||+++.+| +.+|.+.
T Consensus 370 dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEeCCC-eEEEEEe
Confidence 7 999998776 5566543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-29 Score=210.04 Aligned_cols=286 Identities=12% Similarity=0.116 Sum_probs=208.7
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceE-EEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLL-YAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l-~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+....++++.+.. | ..+.+++|+ +++| ++++.| .|++||+ .+++.+..+.. ...+.+++|+|++
T Consensus 18 d~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~-~~~~~~~~~~~----~~~v~~~~~spdg~ 86 (391)
T 1l0q_A 18 DVTSNKVTATIPV-----G-SNPMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPA----GSSPQGVAVSPDGK 86 (391)
T ss_dssp ETTTTEEEEEEEC-----S-SSEEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEEC----SSSEEEEEECTTSS
T ss_pred ECCCCeEEEEeec-----C-CCcceEEECCCCCEEEEECCCCCeEEEEEC-CCCeEEEEEEC----CCCccceEECCCCC
Confidence 3345677777773 4 458999999 7766 667688 9999999 88888888874 4499999999987
Q ss_pred -e-EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEe
Q 038568 85 -I-FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVS 159 (357)
Q Consensus 85 -l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~ 159 (357)
| ++++.++.|++||+.+++....+ .+...+.+++|+| +.+ ++++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~-------------------------------~~~~~~~~~~~s~dg~~l~~~~~ 135 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTV-------------------------------KTGKSPLGLALSPDGKKLYVTNN 135 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-------------------------------ECSSSEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEE-------------------------------eCCCCcceEEECCCCCEEEEEeC
Confidence 5 45567799999999987654433 2334678999999 555 6888
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
.++.|++||+.+++.+..+ . ....+.+++|+|++ .+ ++++.++.|++||++ ..+....+. +...+
T Consensus 136 ~~~~v~~~d~~~~~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~----------~~~~~~~~~-~~~~~ 202 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTV-S-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV----------TNSVIDTVK-VEAAP 202 (391)
T ss_dssp TTTEEEEEETTTTEEEEEE-E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETT----------TTEEEEEEE-CSSEE
T ss_pred CCCEEEEEECCCCcEEEEE-e-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECC----------CCeEEEEEe-cCCCc
Confidence 8999999999998888777 3 34567999999999 44 677889999999997 233333333 55678
Q ss_pred eEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE-EEecCCCeEEEeeCCCCcc
Q 038568 238 NALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL-ASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~~~~dg~i~vw~~~~~~~ 311 (357)
.+++|+|++++|++++ .++.|++||+++++.. ..+..+. .+.+++++++ +| ++++.|+.|++||+.++
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-- 276 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT---ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-- 276 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE---EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT--
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE---EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC--
Confidence 9999999999999888 6899999999987643 3333343 4677788765 55 77789999999999987
Q ss_pred eeeeeeecCCcCceE---EEE------------EeeCCCCC---CCCeEEEEEcCCCCeEEecC
Q 038568 312 YRCMAFLEGHEKPVK---SLV------------AISSSSSA---SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~~h~~~v~---~~~------------~~~~~~~~---~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+..+..|..+.. .+. |+.+.... ......+...+.|..+++||
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 339 (391)
T 1l0q_A 277 -TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWD 339 (391)
T ss_dssp -EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEE
T ss_pred -cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEE
Confidence 55555555544421 122 22221100 00013577788899999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=212.34 Aligned_cols=268 Identities=15% Similarity=0.184 Sum_probs=183.4
Q ss_pred ceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCCc---------cccceeccccCCCCceEEEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISDY---------SHVDTFSNDLSSSGSVKSIT 79 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~l~ 79 (357)
.++...+.+ |...|++++|+ +++|++|+.| .|++||+ .++ +.+..+.. |...|.+++
T Consensus 47 ~~~~~~~~~-----~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 117 (351)
T 3f3f_A 47 WELSDSWRA-----HDSSIVAIDWASPEYGRIIASASYDKTVKLWEE-DPDQEECSGRRWNKLCTLND---SKGSLYSVK 117 (351)
T ss_dssp EEEEEEEEC-----CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE-CTTSCTTSSCSEEEEEEECC---CSSCEEEEE
T ss_pred ceecceecc-----CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec-CCCcccccccCcceeeeecc---cCCceeEEE
Confidence 356667775 99999999997 6799999999 9999999 665 44666666 999999999
Q ss_pred EecC--c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 80 FHIT--K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 80 ~~~~--~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
|+|+ + |++++.||.|++||+.+++....+....... ........|...+.+++|+|
T Consensus 118 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~p~~~ 180 (351)
T 3f3f_A 118 FAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK-----------------VLSIPPANHLQSDFCLSWCPSRF 180 (351)
T ss_dssp ECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE-----------------SCSCCCSSCSCCCEEEEECCCSS
T ss_pred EcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc-----------------ccccccCCcccceeEEEeccCCC
Confidence 9997 5 9999999999999998876544332110000 00001126778899999987
Q ss_pred --CeEEEEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCC-----eEEEEeCCCeEEEEEccccccccccccc
Q 038568 153 --GLMYSVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-----VVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 153 --~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
.++++++.++.+.+|+...++. +..+ ..|...|.+++|+|++ .|++++.||.|++||++..
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~--------- 250 (351)
T 3f3f_A 181 SPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--------- 250 (351)
T ss_dssp SCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC---------
T ss_pred CCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC---------
Confidence 7899999999998888776654 5555 6789999999999996 5999999999999999821
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEe----cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGG----CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA 297 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~ 297 (357)
........+..........+....+..+. ....+.+|+....+ ....+.+|...|.+++|+++ +|++++.
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 -LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE---LLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp -C---------------------------------------CCSEEEE---EEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred -cCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc---EEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 11111222222333333344333333333 33445555544433 56677889999999999876 9999999
Q ss_pred CCeEEEeeCCCCcceeeeeeecCC
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
||.|++|++.+++..+++..+..|
T Consensus 327 dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 327 DGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp TSCEEEEEECTTSCEEEEEEEC--
T ss_pred CCcEEEEecCcCcchhheeehccc
Confidence 999999999998777777777655
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=209.06 Aligned_cols=252 Identities=12% Similarity=0.149 Sum_probs=192.0
Q ss_pred ceEEEeccCC--c--cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLISD--Y--SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~~~--~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.+.||.+ +. + +.+..+. ....+.+++|+|++ +++++.++.|++||+.+++.......
T Consensus 100 ~~~l~~~-d~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------ 162 (433)
T 3bws_A 100 NEKLIAL-DKEGITHRFISRFK----TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------ 162 (433)
T ss_dssp TTCEEEC-CBTTCSEEEEEEEE----CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------
T ss_pred ceEEEEE-CCCCCcceEEEEEc----CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------
Confidence 4566666 33 3 4445555 34556699999966 77777889999999998765432211
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-E
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-Y 198 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~ 198 (357)
..+.+|...|.+++|++ .++++++.|+.|++||+++++.+..+ ..+...+.+++|+|++ .+ +
T Consensus 163 -------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 228 (433)
T 3bws_A 163 -------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYC 228 (433)
T ss_dssp -------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEE
T ss_pred -------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEE
Confidence 11237888999999988 78889999999999999998888887 6788899999999998 45 5
Q ss_pred EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe--------cCCeEEEEecccCCcee
Q 038568 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG--------CDRWIVVWERERDHRMV 270 (357)
Q Consensus 199 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~ 270 (357)
+++.++.|++||++ ..+....+.. ...+.+++|+|++++|++++ .|+.|++||+++++...
T Consensus 229 ~~~~~~~i~~~d~~----------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 229 SNWISEDISVIDRK----------TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp EETTTTEEEEEETT----------TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred EecCCCcEEEEECC----------CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 56689999999997 2334444443 45689999999999999888 48899999999776432
Q ss_pred eeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 271 FAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 271 ~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
.. .|...+.+++|+++ ++++++.|+.|++||+.++ +.+..+. +...+.+++|+|+++ +|+++
T Consensus 298 ~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~-------~l~~~ 362 (433)
T 3bws_A 298 TI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDKPNTIALSPDGK-------YLYVS 362 (433)
T ss_dssp EE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSS-------EEEEE
T ss_pred ec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCCCCeEEEcCCCC-------EEEEE
Confidence 22 34556778888765 5677799999999999987 4444444 667899999999998 77766
Q ss_pred CC---------------CCeEEecC
Q 038568 348 SL---------------NGEIKVWD 357 (357)
Q Consensus 348 ~~---------------dg~v~~wd 357 (357)
+. ||.|++||
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred ecCCCccccccccccccceEEEEEE
Confidence 65 67999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=195.40 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=131.1
Q ss_pred C-ceEEEeccCCccccceeccccCCCCceEEEEEec---Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeee
Q 038568 48 N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI---TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 48 d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 121 (357)
| .|++|++.++++.+..+.+ |...++.++|++ ++ |++++.|++|+|||+.+++....+....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~---~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~--------- 223 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFL---MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD--------- 223 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEE---CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------
T ss_pred CCcEEEEEECCCCceeeeecc---CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---------
Confidence 7 9999999555777888877 888898999988 33 9999999999999999998766654211
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--Ce------------EEEEecCCeEEEEEcCcchhhhhc----ccccc
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL------------MYSVSWDRSFKIWNASNYKCLESV----NKAHE 183 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~------------l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~ 183 (357)
.+...+.+++|+| .+ +++|+.|++|++||..+++.+..+ ..+|.
T Consensus 224 ------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~ 285 (356)
T 2w18_A 224 ------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285 (356)
T ss_dssp ---------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC
T ss_pred ------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc
Confidence 1234566667777 33 467889999999999998876544 23555
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEecCCCEEEEEecCCeEEEEe
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
..+.+..++ ...+++++.|++|++||++ ..+.+..+.+|...+. +++|+|+|++|++|+.|++|+|||
T Consensus 286 ~~~lsg~~s-g~~lASgS~DgTIkIWDl~----------tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 286 GRFLEGDVK-DHCAAAILTSGTIAIWDLL----------LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCEEEEEEE-TTEEEEEETTSCEEEEETT----------TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ceeEccccC-CCEEEEEcCCCcEEEEECC----------CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 555444444 2268999999999999998 5667788888887665 589999999999999999999998
Q ss_pred c
Q 038568 263 R 263 (357)
Q Consensus 263 ~ 263 (357)
+
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=194.27 Aligned_cols=300 Identities=11% Similarity=0.081 Sum_probs=210.9
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEecc-CCccccceeccccCCCCceEEEEEec---
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLI-SDYSHVDTFSNDLSSSGSVKSITFHI--- 82 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~--- 82 (357)
+..+++++.++.. | |. +.+++|+ |++|++++.| .|++||+. .+++.+.++. +...+..++|+|
T Consensus 165 D~~t~~~~~~i~~--g--~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~ 234 (543)
T 1nir_A 165 DGDSKKIVKVIDT--G--YA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKG 234 (543)
T ss_dssp ETTTCCEEEEEEC--S--TT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTT
T ss_pred ECCCceEEEEEec--C--cc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcC
Confidence 3445677777773 2 33 8899999 9999999999 99999993 2466677776 556789999999
Q ss_pred -Cc--eEEee-cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc-ccEEEEEEec---Ce
Q 038568 83 -TK--IFTAH-QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVSDLVVKQ---GL 154 (357)
Q Consensus 83 -~~--l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~---~~ 154 (357)
++ +++++ .+++|.+||..+.+....+........ ....|. ..+..+.+++ .+
T Consensus 235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~--------------------~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD--------------------TQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS--------------------SCCEESCCCEEEEEECSSSSEE
T ss_pred CCCCEEEEEEccCCeEEEEeccccccceeecccCcccC--------------------ccccccCCceEEEEECCCCCEE
Confidence 86 66666 589999999988876655543110000 000132 3788999998 56
Q ss_pred EEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+++...++.|.+||+.+.+.+......+...+..+.|+|+++ ++ ++..+++|.+||.. ..++...+..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~----------tg~l~~~i~~ 364 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK----------DRRLSALVDV 364 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT----------TTEEEEEEEC
T ss_pred EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC----------CCeEEEeecc
Confidence 778888999999999887655421124566788899999994 54 45568999999998 3344444442
Q ss_pred ----cccceeEEEEecC-CCEEEEEe-cCCeEEEEecccCCc----eeeeeeccCCccceEEEeecCc--eEEEec----
Q 038568 233 ----HRSTVNALALNGD-GSLLFSGG-CDRWIVVWERERDHR----MVFAEALWGHTGALLCLINVGD--LLASGS---- 296 (357)
Q Consensus 233 ----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~--~l~~~~---- 296 (357)
|.+....+ ++|+ +..++++. .|++|.+||+.+... ...+..+.+|...+..+.++|+ +|++++
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC
Confidence 44333333 4776 55666665 589999999987211 3356677778777777888776 888876
Q ss_pred ---CCCeEEEeeCCCCcce-eeeee-----ecCCcCceEEEEEeeCCCCCCCCeEEEEEc-----CCCCeEEecC
Q 038568 297 ---ADRTVRIWQRGKENCY-RCMAF-----LEGHEKPVKSLVAISSSSSASNGIVSIGSG-----SLNGEIKVWD 357 (357)
Q Consensus 297 ---~dg~i~vw~~~~~~~~-~~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~-----~~dg~v~~wd 357 (357)
.+++|.+||+.+.+.. +.+.. +..+...+..+.|+|+++ .|+.+ +.|+.|.|||
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-------~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-------EVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS-------EEEEEEECCTTSCCEEEEEE
T ss_pred CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC-------EEEEEeecCCCCCCeEEEEE
Confidence 2779999999987533 22111 245678899999999998 55543 3589999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=190.84 Aligned_cols=250 Identities=9% Similarity=-0.004 Sum_probs=187.6
Q ss_pred CccceeEEEEe----------------cceEEEeeC-------CceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 28 HHMIISCLAVH----------------NSLLYAASL-------NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 28 h~~~i~~~~~s----------------~~~l~t~~~-------d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
|...+..++++ +..++.++. ..|++||+ +. .....+.. |...|.+++|+|++
T Consensus 116 ~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~-~g-~~~~~l~~---~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 116 NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY-DG-YNQFVVHR---SPQPLMSPAWSPDG 190 (415)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET-TS-CSCEEEEE---ESSCEEEEEECTTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC-CC-CCCEEEeC---CCCcceeeEEcCCC
Confidence 77777776654 445655553 28999999 64 55677776 89999999999997
Q ss_pred --eEEeecCC---eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-
Q 038568 85 --IFTAHQDC---KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY- 156 (357)
Q Consensus 85 --l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~- 156 (357)
|++++.++ .|++||+.+++... +. .|...+.+++|+| +.|+
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~-l~------------------------------~~~~~~~~~~~spdg~~la~ 239 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQ-VA------------------------------SFPRHNGAPAFSPDGSKLAF 239 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEE-EE------------------------------CCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEE-ee------------------------------cCCCcccCEEEcCCCCEEEE
Confidence 88888775 99999999876432 21 5667899999999 5566
Q ss_pred EEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeC-CC--eEEEEEccccccccccccceeeeeEe
Q 038568 157 SVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSA-DG--RIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 157 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
+++.++. |++||+.+++. ..+ ..+...+.+++|+|++. |++++. ++ .|.+||+. . .. ...+
T Consensus 240 ~~~~~g~~~i~~~d~~~~~~-~~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~------~----~~-~~~l 306 (415)
T 2hqs_A 240 ALSKTGSLNLYVMDLASGQI-RQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN------G----GA-PQRI 306 (415)
T ss_dssp EECTTSSCEEEEEETTTCCE-EEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------S----SC-CEEC
T ss_pred EEecCCCceEEEEECCCCCE-EeC-cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC------C----CC-EEEE
Confidence 6666654 99999988765 344 56778899999999994 776665 45 67777876 1 11 2334
Q ss_pred eccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC---eEE
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR---TVR 302 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg---~i~ 302 (357)
..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|+ +|++++.++ .|+
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~----~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE----EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 4466788999999999999988764 58999999987642 233443 7788888876 787777766 899
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+||+.. .....+..|.+.|.+++|+|...
T Consensus 382 ~~d~~g----~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 382 LVSTDG----RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTS----CCEEECCCSSSEEEEEEECCCCC
T ss_pred EEECCC----CcEEEeeCCCCCCcCCccccccc
Confidence 999975 34667788999999999999753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=193.49 Aligned_cols=265 Identities=10% Similarity=0.019 Sum_probs=193.8
Q ss_pred ccceeEEEEe---cceEEEee--------CC-ceEEEec--cCCcccc--ceeccccCCCCceEEEEEec----------
Q 038568 29 HMIISCLAVH---NSLLYAAS--------LN-EINVFDL--ISDYSHV--DTFSNDLSSSGSVKSITFHI---------- 82 (357)
Q Consensus 29 ~~~i~~~~~s---~~~l~t~~--------~d-~i~iw~~--~~~~~~~--~~~~~~~~~~~~v~~l~~~~---------- 82 (357)
...+...+|+ .+++++|+ .+ .|+|||+ .. ++.+ ..+.+ |...+..+++.+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~g 137 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKV---NKQWLRYAGHTASDEVFEKLTG 137 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEE---CGGGHHHHHHHHHHHHHHHHHS
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEc---ChhHHHHHHHHHHHHHHHHHcC
Confidence 3466677776 35676775 23 7999998 33 3444 44666 888888777764
Q ss_pred -----C-ceEEeecC------CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 83 -----T-KIFTAHQD------CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 83 -----~-~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
+ .++.++.+ +.|++||++... ...+. .|...+.+++|
T Consensus 138 ~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~------------------------------~~~~~v~~~~~ 186 (415)
T 2hqs_A 138 IKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH------------------------------RSPQPLMSPAW 186 (415)
T ss_dssp SCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE------------------------------EESSCEEEEEE
T ss_pred CCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe------------------------------CCCCcceeeEE
Confidence 3 36666554 799999997543 22222 67889999999
Q ss_pred ec--CeEEEEecCC---eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCe--EEEEEccccccccccc
Q 038568 151 KQ--GLMYSVSWDR---SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGR--IRVWERSVVDHNKERK 221 (357)
Q Consensus 151 ~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~--i~i~d~~~~~~~~~~~ 221 (357)
+| +.|++++.++ .|++||+.+++... + ..+...+.+++|+|++. |+ +++.++. |++||++
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~--------- 255 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA--------- 255 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT---------
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC---------
Confidence 99 7899998875 99999999887653 4 46778899999999994 55 5665554 9999987
Q ss_pred cceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEec
Q 038568 222 SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGS 296 (357)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~ 296 (357)
..+ ...+..|...+.+++|+|+|++|++++. ++ .|++||+.+++. ..+..+...+.+++|+++ +|++++
T Consensus 256 -~~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdG~~l~~~~ 329 (415)
T 2hqs_A 256 -SGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP----QRITWEGSQNQDADVSSDGKFMVMVS 329 (415)
T ss_dssp -TCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC----EECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred -CCC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE----EEEecCCCcccCeEECCCCCEEEEEE
Confidence 122 2455667888999999999999888876 44 688889887653 233345667878888776 777776
Q ss_pred CC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC---eEEecC
Q 038568 297 AD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG---EIKVWD 357 (357)
Q Consensus 297 ~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg---~v~~wd 357 (357)
.+ ..|++||+.+++. ..+..+. .+.+++|+|+++ +|++++.|+ .|++||
T Consensus 330 ~~~g~~~i~~~d~~~~~~----~~l~~~~-~~~~~~~spdg~-------~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 330 SNGGQQHIAKQDLATGGV----QVLSSTF-LDETPSLAPNGT-------MVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp ECSSCEEEEEEETTTCCE----EECCCSS-SCEEEEECTTSS-------EEEEEEEETTEEEEEEEE
T ss_pred CcCCceEEEEEECCCCCE----EEecCCC-CcCCeEEcCCCC-------EEEEEEcCCCccEEEEEE
Confidence 54 6899999998732 3344554 899999999998 888888776 788875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-25 Score=191.66 Aligned_cols=269 Identities=12% Similarity=0.168 Sum_probs=200.3
Q ss_pred Ee--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEec--CCccceeeee
Q 038568 37 VH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKI--TASRQHQLVS 109 (357)
Q Consensus 37 ~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~--~~~~~~~~~~ 109 (357)
|+ +.++++++.| .|.+||. .+++.+.++.. +. .+..++|+|++ |++++.|++|.+||+ .+++....+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~---g~-~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i- 218 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDG-DSKKIVKVIDT---GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI- 218 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEET-TTCCEEEEEEC---ST-TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred cCCCCEEEEEEcCCCeEEEEEC-CCceEEEEEec---Cc-ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-
Confidence 56 7788888888 9999999 89999998884 22 28999999997 999999999999999 665543333
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec------CeEEEEec-CCeEEEEEcCcchhhhhcccc-
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ------GLMYSVSW-DRSFKIWNASNYKCLESVNKA- 181 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~- 181 (357)
.+......++|+| +++++++. +++|.+||..+++++..+...
T Consensus 219 ------------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g 268 (543)
T 1nir_A 219 ------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 268 (543)
T ss_dssp ------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred ------------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence 2234578899985 57777774 899999999999888877321
Q ss_pred --------c-cccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 182 --------H-EDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 182 --------~-~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
| ...+.++.++|++ .+++...++.|.+||+... .. .....+ .+...+..+.|+|++++++
T Consensus 269 ~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~------~~--l~~~~i-~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 269 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI------DN--LTVTSI-GAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS------SS--CEEEEE-ECCSSCCCEEECTTSCEEE
T ss_pred cccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC------Cc--ceeEEe-ccCcCccCceECCCCCEEE
Confidence 2 2378899999977 3777888999999998721 11 111222 3456688999999999876
Q ss_pred EEe-cCCeEEEEecccCCceeeeeec-cCCccceEEEee-c-CceEEEec-CCCeEEEeeCCCCc----ceeeeeeecCC
Q 038568 251 SGG-CDRWIVVWERERDHRMVFAEAL-WGHTGALLCLIN-V-GDLLASGS-ADRTVRIWQRGKEN----CYRCMAFLEGH 321 (357)
Q Consensus 251 ~~~-~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~-~-~~~l~~~~-~dg~i~vw~~~~~~----~~~~~~~~~~h 321 (357)
+++ .+++|.+||..+++....+..- ..|.+....+.. . +..++++. .|++|.+||+.+.. .++++..+.+|
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 654 5889999999988754433321 125544444422 2 22667765 68999999998732 15788999999
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcC-------CCCeEEecC
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGS-------LNGEIKVWD 357 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~-------~dg~v~~wd 357 (357)
...+..+.++|+++ +|++++ .+++|.+||
T Consensus 420 g~~~~~v~~~pdg~-------~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 420 GGGSLFIKTHPKSS-------HLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp CSCCCCEECCTTCC-------EEEECCTTCSSHHHHTCEEEEE
T ss_pred CCCceEEEcCCCCC-------cEEEecCCCCCcccCceEEEEE
Confidence 98999999999999 888887 277999997
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=178.82 Aligned_cols=268 Identities=10% Similarity=0.141 Sum_probs=176.5
Q ss_pred ceEEEe-eCC-ceEEEeccCCc--cccceeccccCCCCceEEEEEecCc--eEEeecC-CeEEEEecC--Cccceeeeee
Q 038568 40 SLLYAA-SLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD-CKIRVWKIT--ASRQHQLVST 110 (357)
Q Consensus 40 ~~l~t~-~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d-~~i~vwd~~--~~~~~~~~~~ 110 (357)
++++++ +.+ .|++|++..++ +.+..+. +...+.+++|+|++ |++++.+ +.|.+|+++ +++. ..+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD----VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAE 79 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe----cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccc
Confidence 344444 677 99999992222 2333333 77889999999987 7777766 999999997 4332 22221
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEc---Ccchhhhhccccccc
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNA---SNYKCLESVNKAHED 184 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~---~~~~~~~~~~~~~~~ 184 (357)
+ .....+..++|+| +++++++ .++.|.+||+ .+.+.+..+ ....
T Consensus 80 ~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~ 129 (343)
T 1ri6_A 80 S----------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--EGLD 129 (343)
T ss_dssp E----------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--CCCT
T ss_pred c----------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--cCCC
Confidence 1 1123678899999 5566555 4889999999 444444444 3344
Q ss_pred cEEEEEEecCC-eEEEEe-CCCeEEEEEccccccccccccceeeee--Eee-ccccceeEEEEecCCCEEEEEe-cCCeE
Q 038568 185 AVNAVVVSDNG-VVYTGS-ADGRIRVWERSVVDHNKERKSRHMLVT--TLV-KHRSTVNALALNGDGSLLFSGG-CDRWI 258 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i 258 (357)
.+.+++|+|++ ++++++ .++.|++||+... .. ..... ... .....+..++|+|+++++++++ .++.|
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALKQDRICLFTVSDD-----GH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV 202 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT-----SC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CceEEEECCCCCEEEEecCCCCEEEEEEecCC-----Cc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 68899999999 466666 8999999998720 11 11111 222 2345688899999999776554 78999
Q ss_pred EEEeccc--CCc--eeeeeecc-CC--ccceEEEeecCc--eEE-EecCCCeEEEeeCCC-CcceeeeeeecCCcCceEE
Q 038568 259 VVWERER--DHR--MVFAEALW-GH--TGALLCLINVGD--LLA-SGSADRTVRIWQRGK-ENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 259 ~vwd~~~--~~~--~~~~~~~~-~~--~~~v~~~~~~~~--~l~-~~~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~v~~ 327 (357)
.+|+++. ++. ........ ++ ...+..++|+++ +|+ ++..++.|++|++.. +...+.+..+..+.. +.+
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~ 281 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRG 281 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCC
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cce
Confidence 9999964 321 11111111 11 234556777765 554 666899999999983 112345555555554 889
Q ss_pred EEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
++|+|+++ +|++++ .|+.|.+|+
T Consensus 282 ~~~s~dg~-------~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 282 FNVDHSGK-------YLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEECTTSS-------EEEEECTTTCEEEEEE
T ss_pred EEECCCCC-------EEEEecCCCCeEEEEE
Confidence 99999998 666666 789999993
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-24 Score=175.56 Aligned_cols=267 Identities=9% Similarity=0.085 Sum_probs=181.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee-cCCeEEEEecCCccc-eeeeeecCc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH-QDCKIRVWKITASRQ-HQLVSTLPT 113 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-~d~~i~vwd~~~~~~-~~~~~~~~~ 113 (357)
+..+++++.+ .|.+||. .+++....+.. +...+ .++|+|++ +++++ .++.|.+||+.+++. ...+.
T Consensus 10 ~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---- 80 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFST-DTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ---- 80 (331)
T ss_dssp CEEEEEEGGGTEEEEEET-TTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE----
T ss_pred CEEEEEecCCCeEEEEeC-cccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc----
Confidence 4457777778 9999999 88888887775 66667 99999987 55554 488999999988765 32222
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC---eEEEEEcCcchhhhhccccccccEEE
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR---SFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
.+..+..+++|+| ++++++..++ .|.+||+.+++.+..+ .......+
T Consensus 81 --------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~ 132 (331)
T 3u4y_A 81 --------------------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--PIPYDAVG 132 (331)
T ss_dssp --------------------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE--ECCTTEEE
T ss_pred --------------------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE--ECCCCccc
Confidence 3344555589999 6777555543 8999999998887776 34455789
Q ss_pred EEEecCCe-EE-EEeCCCe-EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecc
Q 038568 189 VVVSDNGV-VY-TGSADGR-IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERE 264 (357)
Q Consensus 189 ~~~~~~~~-l~-~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~ 264 (357)
++|+|++. ++ +...++. |.+|++..... ..............+..++|+|+|++++++ ..++.|++||+.
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGV------LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCC------EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCc------EeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 99999993 54 4455578 99999872110 001101122344567899999999966554 468999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCc--eEE-EecCCCeEEEeeCCCCcceeeeeeecCC----cCc---eEEEEEeeCC
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGD--LLA-SGSADRTVRIWQRGKENCYRCMAFLEGH----EKP---VKSLVAISSS 334 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~ 334 (357)
+++.......+.. ...+..++++++ +++ +...++.|.+||+.+++. ..+..+..+ ..+ ...++|+|++
T Consensus 207 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg 284 (331)
T 3u4y_A 207 NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTE 284 (331)
T ss_dssp STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTS
T ss_pred CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCC
Confidence 8775222333332 244556677665 454 455688999999998743 112222221 222 3568999999
Q ss_pred CCCCCCeEEE-EEcCCCCeEEecC
Q 038568 335 SSASNGIVSI-GSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l-~s~~~dg~v~~wd 357 (357)
+ +| +++..++.|.+||
T Consensus 285 ~-------~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 285 T-------KLFISANISRELKVFT 301 (331)
T ss_dssp S-------EEEEEETTTTEEEEEE
T ss_pred C-------EEEEecCCCCcEEEEE
Confidence 8 55 5666778999996
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=177.12 Aligned_cols=249 Identities=9% Similarity=0.013 Sum_probs=178.8
Q ss_pred eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC-ccceeeeeecCccccceee
Q 038568 45 ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA-SRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 45 ~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~ 120 (357)
++.+ .|++||+ .+++... +.. |...|.+++|+|++ |++++ ++.|.+||+.+ ++.......
T Consensus 18 ~~~~~~i~~~d~-~~~~~~~-~~~---~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------- 81 (297)
T 2ojh_A 18 GSMRSSIEIFNI-RTRKMRV-VWQ---TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------- 81 (297)
T ss_dssp CCCCEEEEEEET-TTTEEEE-EEE---ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----------
T ss_pred CCcceeEEEEeC-CCCceee-ecc---CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----------
Confidence 4577 9999999 7766654 444 88999999999997 55554 88999999988 654322210
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe--cCCeEEEEE--cCcchhhhhccccccccEEEEEEecC
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS--WDRSFKIWN--ASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
.+...+.+++|+| +++++++ .++...+|. ..+++ ...+ .....+..++|+|+
T Consensus 82 -------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~spd 139 (297)
T 2ojh_A 82 -------------------FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLM--TKNLPSYWHGWSPD 139 (297)
T ss_dssp -------------------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEEC--CSSSSEEEEEECTT
T ss_pred -------------------cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEe--ecCCCccceEECCC
Confidence 2246788999999 7888888 334555554 44443 3333 23335889999999
Q ss_pred Ce-EE-EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecc-cCCcee
Q 038568 195 GV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERE-RDHRMV 270 (357)
Q Consensus 195 ~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~~ 270 (357)
+. |+ ++..++.+++|+++. .......+..+...+.+++|+|++++|+.++ .++.+++|+++ ...
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--- 207 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDI---------DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--- 207 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEET---------TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---
T ss_pred CCEEEEEECCCCceEEEEEEC---------CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---
Confidence 94 54 788899999999751 1122344556778899999999999887766 58999999987 333
Q ss_pred eeeeccCCccceEEEeecCc--eEEEecCC-----------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 271 FAEALWGHTGALLCLINVGD--LLASGSAD-----------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 271 ~~~~~~~~~~~v~~~~~~~~--~l~~~~~d-----------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
....+..|...+..+.|+++ +|++++.+ +.|++||+.+++ ...+..+.+|...+.+++|+|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~-- 284 (297)
T 2ojh_A 208 SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGD-- 284 (297)
T ss_dssp CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSS--
T ss_pred CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCC--
Confidence 23445567778888888776 77777655 579999998864 233455557888999999999998
Q ss_pred CCCeEEEEEcCCCC
Q 038568 338 SNGIVSIGSGSLNG 351 (357)
Q Consensus 338 ~~~~~~l~s~~~dg 351 (357)
+|++++.|.
T Consensus 285 -----~l~~~~~~~ 293 (297)
T 2ojh_A 285 -----EFAYVRYFP 293 (297)
T ss_dssp -----EEEEEEECC
T ss_pred -----EEEEEEecc
Confidence 777776543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-22 Score=169.36 Aligned_cols=270 Identities=10% Similarity=0.074 Sum_probs=190.4
Q ss_pred CccceeEEEEe--cceEEEeeC-------C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeE
Q 038568 28 HHMIISCLAVH--NSLLYAASL-------N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKI 94 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~-------d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i 94 (357)
....+..++|+ ++++++++. + .|.+||. .+++.+..+. ....+..++|+|++ +++...++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIH----NDLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEE----ESSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEe----cCCCcceEEECCCCCEEEEEecCCCEE
Confidence 45668899999 777777762 6 8999999 8888888877 34457889999986 4555668999
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe--cCCeEEEEEcC
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS--WDRSFKIWNAS 170 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~ 170 (357)
.+||..+++....+......... ......+.+++|+| +.+++++ .++.|.+||..
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTE---------------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCS---------------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred EEEeCCCCeeEEEEecCCCcccc---------------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 99999988765544321100000 01112367899999 6566665 47899999999
Q ss_pred cchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee----ccccceeEEEEecC
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV----KHRSTVNALALNGD 245 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~ 245 (357)
+++.+..+ ..+...+.+++|+|++ ++++++.++.|.+||+. ..+....+. ++...+..++|+|+
T Consensus 173 ~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 173 NIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA----------DNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp TTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT----------TTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred CCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC----------CCeEEEEEEcCCCCCCcccceEEECCC
Confidence 98888777 4355568899999998 58888889999999987 223333333 24556788999999
Q ss_pred CCEEEEEec-CCeEEEEecccCCceeeeeeccCCccceEEEeec--Cc-eEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 246 GSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GD-LLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 246 ~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
++++++++. ++.|.+||+.+++....+.. ... ..+.++ ++ ++++...++.|.+||..++ +.+..+...
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~ 313 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAA---PES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY---KVVKTFDTP 313 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEEC---SSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEEECC
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEc---CCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC---eEEEEEecC
Confidence 997777665 59999999998875443332 222 334554 44 4555557999999999987 444444443
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
..+.+++|+|+++ +|+.+..+
T Consensus 314 -~~~~~~~~s~dg~-------~l~v~~~~ 334 (353)
T 3vgz_A 314 -THPNSLALSADGK-------TLYVSVKQ 334 (353)
T ss_dssp -SEEEEEEECTTSC-------EEEEEEEC
T ss_pred -CCCCeEEEcCCCC-------EEEEEEcc
Confidence 4679999999997 55555443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=174.01 Aligned_cols=260 Identities=8% Similarity=0.024 Sum_probs=183.9
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCC-ceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG-SVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
++|++++.+ .|.+||. .+++.+..+.. ++.. .+..++|+|++ ++++..++.|.+||+.+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~-~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT-EKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP- 77 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-
T ss_pred cEEEEcCCCCeEEEEEC-CCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-
Confidence 578899999 9999999 88888877763 1211 58899999986 45666789999999988765544332100
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe------------cCCeEEEEEcCcchhhhhccc
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS------------WDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~ 180 (357)
..+...+.+++|+| +++++++ .++.|.+||+.+++.+..+
T Consensus 78 ------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-- 131 (337)
T 1pby_B 78 ------------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-- 131 (337)
T ss_dssp ------------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--
T ss_pred ------------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE--
Confidence 01223566788998 5777775 5799999999988877666
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR--- 256 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 256 (357)
.....+.+++|+|++. ++++ ++.|.+||+. ..+....+..+.. ...+.|+|+++.++..+.++
T Consensus 132 ~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~----------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 132 EAPRQITMLAWARDGSKLYGL--GRDLHVMDPE----------AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVM 198 (337)
T ss_dssp ECCSSCCCEEECTTSSCEEEE--SSSEEEEETT----------TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEE
T ss_pred eCCCCcceeEECCCCCEEEEe--CCeEEEEECC----------CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCce
Confidence 2345678899999995 6666 6899999987 2333333333220 11237889888666554332
Q ss_pred ---------------------eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCccee
Q 038568 257 ---------------------WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 257 ---------------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
.|.+||+.+++.. ...+..+...+.+++++++ +++++ ++.|++||+.++ +
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---~ 271 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---A 271 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---E
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---c
Confidence 4689999887653 2233445566777888776 67766 799999999987 3
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+..+.. ...+.+++|+|+++ +|++++.|+.|++||
T Consensus 272 ~~~~~~~-~~~~~~~~~s~dg~-------~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 272 SIKRVPL-PHSYYSVNVSTDGS-------TVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEC-SSCCCEEEECTTSC-------EEEEESBSSEEEEEE
T ss_pred CcceecC-CCceeeEEECCCCC-------EEEEEcCCCcEEEEE
Confidence 4444443 34578999999998 888888999999996
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=190.40 Aligned_cols=275 Identities=8% Similarity=0.031 Sum_probs=191.6
Q ss_pred ccceeEEEEe--cceEEEeeC-C------ceEEEeccCCccccceeccccCCC----------------------CceEE
Q 038568 29 HMIISCLAVH--NSLLYAASL-N------EINVFDLISDYSHVDTFSNDLSSS----------------------GSVKS 77 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~-d------~i~iw~~~~~~~~~~~~~~~~~~~----------------------~~v~~ 77 (357)
...|.+++|+ |++|++++. | .|++||+ .+++....+.... +. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKV-VLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGG-TC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhh-cccccccccchhhhhhhhhhhccccCcce
Confidence 5679999999 899999886 3 5999999 8877666655311 11 33889
Q ss_pred EEEecCc--eEEeecCCeEEEEecCCcc--ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 78 ITFHITK--IFTAHQDCKIRVWKITASR--QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 78 l~~~~~~--l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
++|+||+ |++++. +.|.+||+.++. ....+ ..|...+.+++|+|
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------------------~~~~~~~~~~~~SPD 162 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------------------THGEGFATDAKLSPK 162 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC------------------------------CCSSSCEEEEEECTT
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc------------------------------ccCCcccccccCCCC
Confidence 9999998 666665 999999998772 11111 15667899999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhcccccccc----------------EEEEEEecCC-eEEEEeCCC----------
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA----------------VNAVVVSDNG-VVYTGSADG---------- 204 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~-~l~~~~~d~---------- 204 (357)
++|+.++ ++.|++||+.+++..... ..+... +..+.|+||| +|++++.|+
T Consensus 163 G~~la~~~-~~~i~~~d~~~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 163 GGFVSFIR-GRNLWVIDLASGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEe-CCcEEEEecCCCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 6677776 569999999887665443 222221 4789999999 477777665
Q ss_pred -----------------------eEEEEEccccccccccccceeeeeEe--eccccceeEEEEecCCCEEEEEec-----
Q 038568 205 -----------------------RIRVWERSVVDHNKERKSRHMLVTTL--VKHRSTVNALALNGDGSLLFSGGC----- 254 (357)
Q Consensus 205 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~----- 254 (357)
.|.+||+. .. .+..... ..|...+..++| |||++|++++.
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~------~~---~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPA------EQ---AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSS------TT---CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECC------CC---CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 78888876 10 1111111 146788999999 99999987764
Q ss_pred CCeEEEEecccCCceeeeeeccC-CccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE-EE
Q 038568 255 DRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL-VA 330 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~-~~ 330 (357)
+..|++||+.+++.......... ....+..+.|+++ ++++++.||.++||.+.... . ...+..|...|..+ .|
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~ 387 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAV 387 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEE
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEE
Confidence 56899999998875433322110 0002345666655 88888999988888776321 3 56677788888887 59
Q ss_pred eeCCCCCCCCeEEEEEcCCCC--eEEecC
Q 038568 331 ISSSSSASNGIVSIGSGSLNG--EIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg--~v~~wd 357 (357)
+|+++ .++++++.|+ .+++|+
T Consensus 388 s~dg~------~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 388 DEKAG------LAYFRAGIESARESQIYA 410 (741)
T ss_dssp ETTTT------EEEEEECSSCTTCBEEEE
T ss_pred eCCCC------EEEEEEeCCCCceEEEEE
Confidence 99997 2345666666 888884
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-21 Score=167.81 Aligned_cols=199 Identities=13% Similarity=0.095 Sum_probs=144.8
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccc----------cceec--cccCCCCceEEEEEecCc--eE----E
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSH----------VDTFS--NDLSSSGSVKSITFHITK--IF----T 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~----------~~~~~--~~~~~~~~v~~l~~~~~~--l~----~ 87 (357)
+...++.++++ +.++++++.+.+++|+. ..... +.... ....+...|.+++|+|++ |+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dgv~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASGLQIFPT-KNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTEEEEEEH-HHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCEEEEEEc-hHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34568899998 78888888777888876 32111 00000 001256789999999987 66 7
Q ss_pred eecCCeEEEEecCCcc--------ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEE
Q 038568 88 AHQDCKIRVWKITASR--------QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMY 156 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~ 156 (357)
++.|+.|++||+.+.. ....+. .+.+|...|.+++|+| .+|+
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------------------~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHK---------------------------LLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEE---------------------------CCCSGGGSEEEEEECSSCTTEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeee---------------------------ccCCCCCceEEEEECCCCCCEEE
Confidence 8899999999997651 111111 2237899999999998 6899
Q ss_pred EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee----
Q 038568 157 SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV---- 231 (357)
Q Consensus 157 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---- 231 (357)
+++.||+|++||++++..+... ..|...+.+++|+|++ +|++|+.||.|++||++ . .....+.
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~----------~~~~~~~~~~~ 234 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L----------QEKKVIPCPPF 234 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C----------CEEEEECCCTT
T ss_pred EEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C----------cccccccCCcc
Confidence 9999999999999988665544 5688899999999999 69999999999999986 1 1111221
Q ss_pred ---ccccceeEEEEecCCCEEEEEe-cCC------eEEEEecccC
Q 038568 232 ---KHRSTVNALALNGDGSLLFSGG-CDR------WIVVWERERD 266 (357)
Q Consensus 232 ---~~~~~v~~~~~~~~~~~l~~~~-~dg------~i~vwd~~~~ 266 (357)
.|...|.+++|++++.++++.+ .|| .+++|+++..
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 2334899999999887775533 343 3899999864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=163.40 Aligned_cols=263 Identities=9% Similarity=0.106 Sum_probs=172.0
Q ss_pred ceEEEecc-CCccccc-eeccccCCCCceEEEEEecCc-eEEeec---CCeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLI-SDYSHVD-TFSNDLSSSGSVKSITFHITK-IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~-~~~~~~~-~~~~~~~~~~~v~~l~~~~~~-l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.|.+|++. ++++... .... +...+..++|+|++ |++++. ++.|.+|++.+++. ..+....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~---------- 82 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVV---------- 82 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEE----------
T ss_pred CEEEEEEcCCCCeEEEeeeee---ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-EEeeeee----------
Confidence 67777772 2333322 1222 55677889999998 666655 68999999976543 2222111
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCc---chhhhhcccc--------ccccEEE
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASN---YKCLESVNKA--------HEDAVNA 188 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~--------~~~~v~~ 188 (357)
.+...+..++|+| ++|++++ .++.|.+|++.. .+.+..+... ....+.+
T Consensus 83 -----------------~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 83 -----------------APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp -----------------EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred -----------------cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 4556788899999 6677777 689999999963 2222222111 1234889
Q ss_pred EEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeec-cccceeEEEEecCCCEEEE-EecCCeEEEEeccc
Q 038568 189 VVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-HRSTVNALALNGDGSLLFS-GGCDRWIVVWERER 265 (357)
Q Consensus 189 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 265 (357)
++|+|++. +++...++.|.+|++.. .. .......... ....+..++|+|+|+++++ +..++.|.+|+++.
T Consensus 146 ~~~spdg~l~v~~~~~~~v~~~~~~~------~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 146 TDLTPDNRLAVIDLGSDKVYVYNVSD------AG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECT------TS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEECCCCcEEEEeCCCCEEEEEEECC------CC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 99999996 55556688999999861 11 1112222222 2335778999999996665 55688999999885
Q ss_pred C-CceeeeeeccCCc------cceEEEeecCc--eE-EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 266 D-HRMVFAEALWGHT------GALLCLINVGD--LL-ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 266 ~-~~~~~~~~~~~~~------~~v~~~~~~~~--~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
. ............. ..+..++|+++ +| ++...++.|.+|++......+.+..+..+...+.+++|+|+++
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS
T ss_pred CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC
Confidence 1 2222222222211 34677777776 55 5666789999999974334466666777777789999999998
Q ss_pred CCCCCeEEEEEcC-CCCeEEec
Q 038568 336 SASNGIVSIGSGS-LNGEIKVW 356 (357)
Q Consensus 336 ~~~~~~~~l~s~~-~dg~v~~w 356 (357)
+|++++ .++.|.+|
T Consensus 299 -------~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 299 -------FVVVVNQNTDNATLY 313 (347)
T ss_dssp -------EEEEEETTTTEEEEE
T ss_pred -------EEEEEEcCCCcEEEE
Confidence 776665 45899999
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=185.43 Aligned_cols=282 Identities=9% Similarity=-0.000 Sum_probs=176.8
Q ss_pred cccccccceecccccCCCCCCCccceeEEEEecceEEEeeCCceEEEeccCCcccc-ceeccccCCC-------------
Q 038568 7 VSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHV-DTFSNDLSSS------------- 72 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d~i~iw~~~~~~~~~-~~~~~~~~~~------------- 72 (357)
..+..|.+.....+.. + .+..+.|.|+.+++++.+.| +||+ .+++.+ ..+.. +.
T Consensus 10 ~~~~~~~~~~~~~~~~-----~--~~~~~~w~g~~~~~~~~~~i-~~d~-~tg~~~~~~l~~---~~~~~~~l~~~~~~~ 77 (706)
T 2z3z_A 10 HGSLMPGGKEFYNFYP-----E--YVVGLQWMGDNYVFIEGDDL-VFNK-ANGKSAQTTRFS---AADLNALMPEGCKFQ 77 (706)
T ss_dssp -------------------------CTTCEEETTEEEEEETTEE-EEEC--------CEEEE---HHHHHTTC-------
T ss_pred cccccCCccccccccc-----c--cCCCCcCcCCeEEEEeCCcE-EEEC-CCCcEeeEEeec---hhHhhhhccchhccc
Confidence 4555666666666653 3 35667777777777776667 9999 887763 33332 22
Q ss_pred ----CceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 73 ----GSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 73 ----~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..|.+++|+|++.+..+.++.|++||+.+++..... .+...+.++
T Consensus 78 ~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~-------------------------------~~~~~~~~~ 126 (706)
T 2z3z_A 78 TTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF-------------------------------DTNEETASL 126 (706)
T ss_dssp ----CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE-------------------------------CCTTCCTTC
T ss_pred cccccCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc-------------------------------CCcccccCC
Confidence 569999999998333335699999999877543221 344567888
Q ss_pred EEec--CeEEEEecCCeEEEEEcCc-----chhhhhcccccccc--------------EEEEEEecCC-eEEEEe-----
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASN-----YKCLESVNKAHEDA--------------VNAVVVSDNG-VVYTGS----- 201 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~-~l~~~~----- 201 (357)
+|+| +.|+. ..++.|++||+.+ ++..... ..+... +.++.|+||| +|++++
T Consensus 127 ~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~ 204 (706)
T 2z3z_A 127 DFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM 204 (706)
T ss_dssp EECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred cCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence 9999 67777 4789999999988 7665444 222222 4789999999 477776
Q ss_pred ----------------------------CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 202 ----------------------------ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 202 ----------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
.+..|++||+. .+. ...+.....+...+.+++|+|||+.|++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~------~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 276 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA------TGK--TVYLQTGEPKEKFLTNLSWSPDENILYVAE 276 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT------TTE--EEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC------CCc--eEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence 44679999987 211 111111224667899999999999999988
Q ss_pred cCC-----eEEEEecccCCceeeeeeccCCcc---ceEEEeecC--c--eEEEecCCCeEEEeeCC-CCcceeeeeeecC
Q 038568 254 CDR-----WIVVWERERDHRMVFAEALWGHTG---ALLCLINVG--D--LLASGSADRTVRIWQRG-KENCYRCMAFLEG 320 (357)
Q Consensus 254 ~dg-----~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~--~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~ 320 (357)
.++ .|++||+.+++....+... .+.. .+..+.|++ + ++++++.|+.++||++. ++ ..+..+..
T Consensus 277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~ 352 (706)
T 2z3z_A 277 VNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTK 352 (706)
T ss_dssp ECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCC
T ss_pred eCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCC
Confidence 775 8999999987433222211 1221 234456655 4 88899999999999886 33 44566677
Q ss_pred CcCceEE-EEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 321 HEKPVKS-LVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 321 h~~~v~~-~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
|...+.. ++|+|+++ .++++++.++
T Consensus 353 ~~~~v~~~~~~spdg~------~l~~~~~~~~ 378 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGT------RLYFESTEAS 378 (706)
T ss_dssp SSSCEEEEEEECTTSS------EEEEEESSSC
T ss_pred CCeEEEeeeEEcCCCC------EEEEEecCCC
Confidence 7778877 79999987 2345555555
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=180.34 Aligned_cols=262 Identities=8% Similarity=-0.005 Sum_probs=181.3
Q ss_pred CccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeec---CCeEEEEec
Q 038568 28 HHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQ---DCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~---d~~i~vwd~ 99 (357)
+..+|.+++|+ |++||.++. | +++||++ ++++..+.... +...+..++|+||. +++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~-~~g~~~~lt~~---~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLY-DGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEE-ETTEEEECCSS---CCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEE-cCCCcEeeecc---cccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence 45689999999 899999886 8 9999999 77665544432 33689999999998 555554 455677665
Q ss_pred CC--ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhh
Q 038568 100 TA--SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 100 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
+. ......+.. .....+.++.+++ ..+++.+.++.+.+||+.+++...
T Consensus 96 ~~~~~g~~~~l~~-----------------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~ 146 (582)
T 3o4h_A 96 NTSRPGEEQRLEA-----------------------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE 146 (582)
T ss_dssp ETTSTTCCEECTT-----------------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE
T ss_pred eccCCCccccccC-----------------------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE
Confidence 44 221122211 1112234444444 444555555556699998876544
Q ss_pred hccccccccEEEEEEecCCe-EEEEeCC----CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 177 SVNKAHEDAVNAVVVSDNGV-VYTGSAD----GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~-l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.. . +.. .+++|+|||+ |++++.+ +.|++||+. . .+ ...+..|...+..++|+|||+.|++
T Consensus 147 l~-~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~------~----g~-~~~l~~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 147 LA-R-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS------S----GG-LRVFDSGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp EE-E-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETT------T----CC-CEEECCSSCEEEEEEECTTSCEEEE
T ss_pred ee-c-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC------C----CC-ceEeecCCCccccceECCCCCEEEE
Confidence 33 2 222 7899999994 7767666 789999987 1 22 2355678888999999999999998
Q ss_pred EecCC--eEEEEecccCCceeeeeeccCCccceEEEe--------ecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 252 GGCDR--WIVVWERERDHRMVFAEALWGHTGALLCLI--------NVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 252 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
+..++ .|++||+.+++.. .+.+|...+..+. |+++ ++++++.|+.+++|++ + +...
T Consensus 212 ~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g---~~~~--- 279 (582)
T 3o4h_A 212 LETAREARLVTVDPRDGSVE----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G---ERVE--- 279 (582)
T ss_dssp EECSSCEEEEEECTTTCCEE----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T---EEEC---
T ss_pred ccCCCeeEEEEEcCCCCcEE----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C---Ceec---
Confidence 88888 8999999987643 4455666665555 7766 8889999999999999 4 2222
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe---EEecC
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE---IKVWD 357 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~---v~~wd 357 (357)
...+.|.+++|+ +++ ++++++.+.. +.+||
T Consensus 280 ~~~~~v~~~~~s-dg~-------~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGK-------LVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp CCSSEEEEEEEE-TTE-------EEEEEEETTEEEEEEEET
T ss_pred cCCCceEEEEec-CCE-------EEEEEcCCCCCCeEEEEc
Confidence 234678999999 876 7888776643 55543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=188.79 Aligned_cols=276 Identities=8% Similarity=0.015 Sum_probs=202.0
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
|...+.++.|+ ..++++++.+ .+.||.+...+.....+.. |. .+...+|+|++ |+.+ .++.|.+|++...+
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~---~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS---FT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC---CC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecC---CC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence 99999999999 5555677777 9999987323445555554 44 46677999987 6655 58999999984332
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe-c--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK-Q--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
...+.... ......+..|...+.+++|+ | +.+++++ ++.|.+|++..++... + .
T Consensus 277 -l~~l~~~~-------------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~-~ 333 (1045)
T 1k32_A 277 -IEKIEIGD-------------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-P 333 (1045)
T ss_dssp -EEECCCCC-------------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-S
T ss_pred -eeeeccCc-------------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c-c
Confidence 21111100 00001112466678999999 8 6677777 8899999998776443 3 4
Q ss_pred cccc-cEEEEEEecCC-eEEEEeCCCeEE-EEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 181 AHED-AVNAVVVSDNG-VVYTGSADGRIR-VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 181 ~~~~-~v~~~~~~~~~-~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.+.. .+..++|+ ++ .|+.++.++.+. +||+. . ... ..+..|...+..++|+|||++|++++.++.
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~------~----~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR------T----GKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT------T----CCE-EECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC------C----CCc-eEecCCccceeeeEECCCCCEEEEECCCCe
Confidence 5556 89999999 88 588888788888 88876 1 122 223367788999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC----------CeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD----------RTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
|++||+.+++.. ....+|...+..++|+|+ +|++++.+ +.|++||+.++ + ...+..|...+
T Consensus 402 v~~~d~~tg~~~---~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 402 IMTVDLETGKPT---VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHD 474 (1045)
T ss_dssp EEEEETTTCCEE---EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBE
T ss_pred EEEEECCCCceE---EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCccc
Confidence 999999987643 233467788888888876 77777654 49999999986 3 55677788889
Q ss_pred EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 326 KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..++|+|+++ +|+.++.++..++|+
T Consensus 475 ~~~~~spdG~-------~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSK-------NLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSC-------EEEEEESCCCCCEEC
T ss_pred CCceEcCCCC-------EEEEEecccCCcCcc
Confidence 9999999998 888888877776664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-21 Score=160.16 Aligned_cols=266 Identities=12% Similarity=0.122 Sum_probs=172.4
Q ss_pred CccceeEEEEe--cceEEEeeCC--ceEEEeccC--Ccc--ccceeccccCCCCceEEEEEecCc--eEEee-cCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN--EINVFDLIS--DYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAH-QDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d--~i~iw~~~~--~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-~d~~i~v 96 (357)
|...+.+++|+ +++|++++.+ .|.+|++ + +++ .+..+.. ...+..++|+|++ |++++ .++.|.+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI-APDDGALTFAAESAL----PGSLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEE-CTTTCCEEEEEEEEC----SSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEe-cCCCCceeecccccc----CCCCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 77789999999 8878887764 9999999 5 333 3344442 3378899999987 55554 5889999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCc-c
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASN-Y 172 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~ 172 (357)
||+..+......... .....+.+++|+| +++++++ .++.|.+||+.+ +
T Consensus 111 ~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 111 TRLEDGLPVGVVDVV----------------------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp EEEETTEEEEEEEEE----------------------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EECCCCccccccccc----------------------------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 999533222222221 2223578899999 5677776 899999999987 4
Q ss_pred hhhh----hccccccccEEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEee---cc---ccceeEE
Q 038568 173 KCLE----SVNKAHEDAVNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLV---KH---RSTVNAL 240 (357)
Q Consensus 173 ~~~~----~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~---~~~v~~~ 240 (357)
+... .+.......+..++|+|++. ++ ++..++.|.+||+.. ............ .. ...+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD------PHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC------TTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC------CCCcEEEEeeccccCccccccCCccce
Confidence 3321 22123345788999999994 54 445889999999862 111111111221 11 2356689
Q ss_pred EEecCCCEEEEE-ecCCeEEEEecccC-CceeeeeeccCCccceEEEeecCc--eEEEec-CCCeEEEeeCC--CCccee
Q 038568 241 ALNGDGSLLFSG-GCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTVRIWQRG--KENCYR 313 (357)
Q Consensus 241 ~~~~~~~~l~~~-~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~--~~~~~~ 313 (357)
+|+|++++|+++ ..++.|.+||+... ........+..+.. +..++|+++ +|++++ .++.|.+|+++ +++ .+
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~ 314 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LH 314 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-ee
Confidence 999999887754 47999999999831 12223333333333 667777765 666666 68999999654 442 34
Q ss_pred eeeeecCCcCceEEEEEeeCCC
Q 038568 314 CMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.+..+... ....+++|.|+.+
T Consensus 315 ~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 315 EKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEECS-SSCCEEEEEEEC-
T ss_pred EccccccC-CCCeeEEEEcccC
Confidence 45555443 4567888888764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-22 Score=180.64 Aligned_cols=283 Identities=8% Similarity=0.039 Sum_probs=186.1
Q ss_pred cceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC-----
Q 038568 30 MIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA----- 101 (357)
Q Consensus 30 ~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~----- 101 (357)
..|.+++|+ .+.++.+....|++||+ .+++..... . +...+.+++|+|++ |++ ..|+.|.+||+.+
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~-~~~~~~~l~-~---~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDM-LARKVTYLF-D---TNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEET-TTTEEEEEE-C---CTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEEC-CCCceEEcc-C---CcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccC
Confidence 569999999 65555553339999999 776654433 3 67788999999998 555 5789999999987
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe--------------------
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-------------------- 159 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------------------- 159 (357)
++......... ... ..+.. +...+...+.++.|+| ++|++++
T Consensus 156 g~~~~~~~~~~---~~~-----------~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~ 219 (706)
T 2z3z_A 156 SRAIAVTIDGT---ETL-----------VYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAE 219 (706)
T ss_dssp CCCEESCSCCB---TTE-----------EESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred CCcEEeccCCC---CCe-----------Ecccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 55432211100 000 00000 1122334568899999 7788877
Q ss_pred -------------cCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCCe-EEEEeCCC-----eEEEEEccccccccc
Q 038568 160 -------------WDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNGV-VYTGSADG-----RIRVWERSVVDHNKE 219 (357)
Q Consensus 160 -------------~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-l~~~~~d~-----~i~i~d~~~~~~~~~ 219 (357)
.+..|.+||+.+++...... ..+...+.+++|+|++. |++++.++ .|++||+. .
T Consensus 220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~------~ 293 (706)
T 2z3z_A 220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE------T 293 (706)
T ss_dssp EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT------T
T ss_pred eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC------C
Confidence 44679999998877543331 24667899999999994 77777665 89999987 2
Q ss_pred cccceeeeeEeeccc---cceeEEEEec--CCCEEEEEecCCeEEEEecc-cCCceeeeeeccCCccceEE-EeecCc--
Q 038568 220 RKSRHMLVTTLVKHR---STVNALALNG--DGSLLFSGGCDRWIVVWERE-RDHRMVFAEALWGHTGALLC-LINVGD-- 290 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~-~~~~~~-- 290 (357)
+.. ...+.. ..+. ..+..++|+| +|++++++..|+.+++|+++ ++. ....+..+...+.. +.|+++
T Consensus 294 g~~-~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 294 GRF-VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFDPKGT 368 (706)
T ss_dssp CCE-EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEECTTSS
T ss_pred Cce-eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEcCCCC
Confidence 100 111111 1122 2346789999 99999999999999999887 343 33445566666765 677765
Q ss_pred eE-EEecCCC----eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC-CC---CeEEecC
Q 038568 291 LL-ASGSADR----TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS-LN---GEIKVWD 357 (357)
Q Consensus 291 ~l-~~~~~dg----~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d---g~v~~wd 357 (357)
.| +++..++ .|..||+.+++ ...+. |...+.+++|+|+++ +|+..+ .+ +.|.+||
T Consensus 369 ~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~-------~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 369 RLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGS-------AIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSS-------EEEEEEECSSCSCEEEEEE
T ss_pred EEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCC-------EEEEEecCCCCCcEEEEEE
Confidence 44 4555554 67777777653 22232 567799999999998 666543 33 5688885
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=185.62 Aligned_cols=273 Identities=5% Similarity=-0.055 Sum_probs=181.1
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCC---ceEEEEEecCc--eEEeecC---------C
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG---SVKSITFHITK--IFTAHQD---------C 92 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~--l~~~~~d---------~ 92 (357)
..+.+++|+ |+++++ +.| .|++||+ .+++....+.. |.. .|.+++|+||+ |++++.+ +
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~-~~g~~~~~~~~---~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNV-ETNTSTVLIEG---KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCG-GGCCCEEEECT---TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEEC-CCCcEEEEecc---ccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 347788999 777766 678 9999999 88887777765 544 49999999998 7777664 7
Q ss_pred eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcC
Q 038568 93 KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 93 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~ 170 (357)
.+.+||+.+++. ..+.... .|...+..++|+| +.|+.++. +.|++||+.
T Consensus 92 ~i~~~d~~~~~~-~~l~~~~---------------------------~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~ 142 (723)
T 1xfd_A 92 YYVLSKIPHGDP-QSLDPPE---------------------------VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV 142 (723)
T ss_dssp EEEEEESSSCCC-EECCCTT---------------------------CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred eEEEEECCCCce-EeccCCc---------------------------cccccccccEECCCCCEEEEEEC-CeEEEEECC
Confidence 888999998764 2222211 4555688899999 67887775 799999998
Q ss_pred cchhhhhccccccc------------------cEEEEEEecCC-eEEEEeCCC---------------------------
Q 038568 171 NYKCLESVNKAHED------------------AVNAVVVSDNG-VVYTGSADG--------------------------- 204 (357)
Q Consensus 171 ~~~~~~~~~~~~~~------------------~v~~~~~~~~~-~l~~~~~d~--------------------------- 204 (357)
+++..... ..+.. .+.+++|+||| +|++++.++
T Consensus 143 ~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 143 GKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (723)
T ss_dssp SSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence 87765544 23222 23789999999 477766543
Q ss_pred -------eEEEEEccccccccccccceeeeeEeec------cccceeEEEEecCCCEEEEEec----CCeEEEEecccCC
Q 038568 205 -------RIRVWERSVVDHNKERKSRHMLVTTLVK------HRSTVNALALNGDGSLLFSGGC----DRWIVVWERERDH 267 (357)
Q Consensus 205 -------~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~ 267 (357)
.|++||+.. ......+.. +...+..++|+|||++|++... +..|++||+.+++
T Consensus 222 G~~~~~~~l~~~d~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 222 GSENPSISLHVIGLNG----------PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp TSCCCEEEEEEEESSS----------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CCCCCeeEEEEEECCC----------CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 788888862 111122222 3567899999999998877653 3579999998876
Q ss_pred ceeeeeeccCCccce----EEEeecCc--eEEE--ecCCC------eEEEeeC-CCCcceeeeeeecCCcCceEE-EEEe
Q 038568 268 RMVFAEALWGHTGAL----LCLINVGD--LLAS--GSADR------TVRIWQR-GKENCYRCMAFLEGHEKPVKS-LVAI 331 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v----~~~~~~~~--~l~~--~~~dg------~i~vw~~-~~~~~~~~~~~~~~h~~~v~~-~~~~ 331 (357)
....... .+...+ ..+.|+++ .|+. +..++ .|++||+ ..++. .+...+..+...+.. ++|+
T Consensus 292 ~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 292 CTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp EEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCSSSCEEEEEEEE
T ss_pred ceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecCCeEEEeeeEEc
Confidence 4333221 122222 24566655 4443 55677 5777773 33310 012333333344554 6999
Q ss_pred eCCCCCCCCeEEEEE-cCCC--CeEEecC
Q 038568 332 SSSSSASNGIVSIGS-GSLN--GEIKVWD 357 (357)
Q Consensus 332 ~~~~~~~~~~~~l~s-~~~d--g~v~~wd 357 (357)
|+++ .|+. +..+ +.+++|+
T Consensus 369 pdg~-------~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 369 EKGN-------KIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp TTTT-------EEEEEESSSCTTCCEEEE
T ss_pred CCCC-------EEEEEEcCCCCcceEEEE
Confidence 9998 6654 4444 7888884
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-22 Score=181.05 Aligned_cols=270 Identities=12% Similarity=0.019 Sum_probs=178.6
Q ss_pred cceeEEEEe--cceEEEeeCCceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 30 MIISCLAVH--NSLLYAASLNEINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
..|.+++|+ |++|++++...|++||+ .++. ....+.. +...+.+++|+||+ |+.++ ++.|.+||+.+++
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~~~i~~~d~-~~~~~~~~~~l~~---~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLGGELYLYDL-KQEGKAAVRQLTH---GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEETTEEEEEES-SSCSTTSCCBCCC---SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cCcceeEECCCCCEEEEEeCCcEEEEEC-CCCCcceEEEccc---CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 348899999 89999988679999999 7762 4455555 88899999999998 66655 5799999998765
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC-------------------
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR------------------- 162 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg------------------- 162 (357)
.......... . ...+...-+.......+.++.|+| +.|++++.|+
T Consensus 184 ~~~~~~~~~~---~-----------~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 184 QMQLTADGST---T-----------IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp EEECCCCCCS---S-----------EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred EEEeccCCcc---c-----------eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 4322211000 0 000000000001122357789999 7788887665
Q ss_pred --------------eEEEEEcCc-chhhhhccc-cccccEEEEEEecCC-eEEEEeC-----CCeEEEEEcccccccccc
Q 038568 163 --------------SFKIWNASN-YKCLESVNK-AHEDAVNAVVVSDNG-VVYTGSA-----DGRIRVWERSVVDHNKER 220 (357)
Q Consensus 163 --------------~i~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~-----d~~i~i~d~~~~~~~~~~ 220 (357)
.|.+||+.+ ++....... .+...+..++| ||| +|++++. +..|++||+.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~-------- 320 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA-------- 320 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT--------
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC--------
Confidence 789999988 765433211 46778999999 999 4665443 5789999987
Q ss_pred ccceeeeeEeecccc----ceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE-eecCc--eE-
Q 038568 221 KSRHMLVTTLVKHRS----TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGD--LL- 292 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l- 292 (357)
..+....+..+.. .+..++|+|||+++++++.||.+++|.++.... ...+..+...+..+ .|+++ .|
T Consensus 321 --~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~ 395 (741)
T 2ecf_A 321 --SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAY 395 (741)
T ss_dssp --TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEE
T ss_pred --CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEE
Confidence 2222333333322 456899999999999999999888887763222 33455666777665 46655 44
Q ss_pred EEecCCC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 293 ASGSADR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 293 ~~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++++.++ .++||++.... .....+.. ...+..++|+|+++
T Consensus 396 ~~~~~~~~~~~~l~~~~~~g--~~~~~l~~-~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 396 FRAGIESARESQIYAVPLQG--GQPQRLSK-APGMHSASFARNAS 437 (741)
T ss_dssp EEECSSCTTCBEEEEEETTC--CCCEECCC-SCSEEEEEECTTSS
T ss_pred EEEeCCCCceEEEEEEEcCC--CCeeeccc-CCCceEEEECCCCC
Confidence 5566565 89999986421 22344444 56688999999998
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=166.60 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=143.8
Q ss_pred CCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 72 SGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...++.++++++. +++++.|+ +++|+....... ......... ... ........+...|.+++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~~~-~~~-----------~~~~~~~~~~~~v~~l~ 99 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDPNK-IVD-----------KVQGLLVPMKFPIHHLA 99 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCTTC-EEE-----------CCCCEEECCSSCEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCccc-ccc-----------cCccccccCCCcccEEE
Confidence 3467889999876 77777777 899886432110 000000000 000 00000114567899999
Q ss_pred Eec--CeEE----EEecCCeEEEEEcCcc--------hh---hhhccccccccEEEEEEecC-C-eEEEEeCCCeEEEEE
Q 038568 150 VKQ--GLMY----SVSWDRSFKIWNASNY--------KC---LESVNKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWE 210 (357)
Q Consensus 150 ~~~--~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d 210 (357)
|++ ++|+ +++.|+.|++||++++ +. +..+ .+|...|.+++|+|+ + .|++++.||.|++||
T Consensus 100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 999 7788 7888999999999775 11 2233 568899999999997 4 699999999999999
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc----CCccceEEEe
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW----GHTGALLCLI 286 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~v~~~~ 286 (357)
++ .........+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.... .|...+.++.
T Consensus 179 ~~----------~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 179 VT----------ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp ES----------SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred cC----------CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence 98 223344556688999999999999999999999999999998 33222221111 2345889999
Q ss_pred ecCc--eE-EEecCCC------eEEEeeCCCC
Q 038568 287 NVGD--LL-ASGSADR------TVRIWQRGKE 309 (357)
Q Consensus 287 ~~~~--~l-~~~~~dg------~i~vw~~~~~ 309 (357)
|+++ ++ +....|| .+++|++++.
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9887 33 2233443 3899999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-21 Score=183.13 Aligned_cols=292 Identities=10% Similarity=0.022 Sum_probs=196.2
Q ss_pred CccceeEEEEe--cceEEEee------CC-ceEEEeccCCccccceeccccCCCCce-------EEEEEecCc--eEEee
Q 038568 28 HHMIISCLAVH--NSLLYAAS------LN-EINVFDLISDYSHVDTFSNDLSSSGSV-------KSITFHITK--IFTAH 89 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v-------~~l~~~~~~--l~~~~ 89 (357)
|...|.+++|| |++||.++ .+ .|++|++ .+++ ...+.. |...+ ..++|+||+ +++++
T Consensus 51 ~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~-~~g~-~~~lt~---~~~~~~~~~~~~~~~~~SpDg~ll~~~~ 125 (1045)
T 1k32_A 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG-ENGE-IKRITY---FSGKSTGRRMFTDVAGFDPDGNLIISTD 125 (1045)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET-TTTE-EEECCC---CCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC-CCCC-eEEccc---CCCcccccccccccccCCCCCEEEEEEC
Confidence 99999999999 99999774 34 8999999 7765 556665 88888 999999998 55665
Q ss_pred cC------CeEEEEecCCccceeeeeecCccc-----------------------------------------------c
Q 038568 90 QD------CKIRVWKITASRQHQLVSTLPTVK-----------------------------------------------D 116 (357)
Q Consensus 90 ~d------~~i~vwd~~~~~~~~~~~~~~~~~-----------------------------------------------~ 116 (357)
.+ ..|.+|++.+++...... .+... .
T Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 126 AMQPFSSMTCLYRVENDGINFVPLNL-GPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp TTSSSTTCCEEEEEEGGGTEEEECCS-CSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CcCCCcccceEEEEECCCCCeEEecC-CCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 44 357788876654321111 00000 0
Q ss_pred ce-eeeecCCCeEEEec---------------ccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 117 RL-IRSVLPNNYVTVRR---------------HKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 117 ~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
.. ...+.++ .+.+.. .....+..|. .+...+|+| +.++.+ .++.|.+||+... .+..+
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l 280 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKI 280 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEEC
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeee
Confidence 00 0000011 111110 0111122222 344567777 455555 4778888887332 22233
Q ss_pred ccc-----------ccccEEEEEEe-cCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeecccc-ceeEEEEec
Q 038568 179 NKA-----------HEDAVNAVVVS-DNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-TVNALALNG 244 (357)
Q Consensus 179 ~~~-----------~~~~v~~~~~~-~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 244 (357)
.. +...+.+++|+ |+|. +++++ ++.+.+|++. . .. ...+..|.. .+..++|+
T Consensus 281 -~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~------~----~~-~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 281 -EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS------G----TY-VLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp -CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT------S----SB-EEECSCCSCEEEEEECSS-
T ss_pred -ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC------C----Cc-eEEccCCCcceEEeeeEc-
Confidence 12 23468899999 9995 66665 8899999986 1 11 223455666 88999999
Q ss_pred CCCEEEEEecCCeEE-EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 245 DGSLLFSGGCDRWIV-VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
+|+.|+.++.++.+. +||+.++... .+.+|...+..++|+|+ +|++++.++.|++||+.++ +......+|
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~----~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~ 419 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSR 419 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECS
T ss_pred CCCeEEEEECCCceEEEEECCCCCce----EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCC
Confidence 999999998888898 9999876532 23367778888888876 8999999999999999987 344455578
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCC----------eEEecC
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNG----------EIKVWD 357 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg----------~v~~wd 357 (357)
...+.+++|+||++ +|++++.++ .|++||
T Consensus 420 ~~~v~~~~~SpDG~-------~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 420 EAMITDFTISDNSR-------FIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SSCCCCEEECTTSC-------EEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CCCccceEECCCCC-------eEEEEecCccccccCCCCCeEEEEE
Confidence 89999999999998 888877644 899996
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-19 Score=151.77 Aligned_cols=279 Identities=8% Similarity=0.048 Sum_probs=171.4
Q ss_pred ceEEEee----CC-ceEEEecc-CCccccceeccccCCCCceEEEEEecCc--eEEeecC----CeEEEEecCCc-ccee
Q 038568 40 SLLYAAS----LN-EINVFDLI-SDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD----CKIRVWKITAS-RQHQ 106 (357)
Q Consensus 40 ~~l~t~~----~d-~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d----~~i~vwd~~~~-~~~~ 106 (357)
.++++|+ .+ .|.+|++. .+++....... +...+..++|+|++ |++++.+ +.|.+|+++.. ....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3445553 45 88888772 22333222222 45677789999987 7777765 79999998763 2222
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe-cCCeEEEEEcCcchhhhhcc------
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS-WDRSFKIWNASNYKCLESVN------ 179 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~------ 179 (357)
.+.... .+......+++..+++++++ .++.|.+|++.....+..+.
T Consensus 91 ~~~~~~---------------------------~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 143 (361)
T 3scy_A 91 LLNTQK---------------------------TMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK 143 (361)
T ss_dssp EEEEEE---------------------------CSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred EeeEec---------------------------cCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence 222211 23345666777446666665 58899999997544333221
Q ss_pred -------ccccccEEEEEEecCCe-EEE-EeCCCeEEEEEccccccccccc-cce--eeeeEeeccccceeEEEEecCCC
Q 038568 180 -------KAHEDAVNAVVVSDNGV-VYT-GSADGRIRVWERSVVDHNKERK-SRH--MLVTTLVKHRSTVNALALNGDGS 247 (357)
Q Consensus 180 -------~~~~~~v~~~~~~~~~~-l~~-~~~d~~i~i~d~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~ 247 (357)
..+...+.+++|+|++. +++ ...++.|.+|++.......... ... ............+..++|+|+|+
T Consensus 144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 01123468899999994 544 4458999999987211000000 000 00111223445678999999999
Q ss_pred EEEEEe-cCCeEEEEecccCCce--eeeeeccCCccceEEEeecCc--eEEEecC--CCeEEEeeCCC-Ccceeeeeeec
Q 038568 248 LLFSGG-CDRWIVVWERERDHRM--VFAEALWGHTGALLCLINVGD--LLASGSA--DRTVRIWQRGK-ENCYRCMAFLE 319 (357)
Q Consensus 248 ~l~~~~-~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~l~~~~~--dg~i~vw~~~~-~~~~~~~~~~~ 319 (357)
++++++ .++.|.+|++.++... ........+......++|+++ +|+++.. ++.|.+|++.. ....+.+..+.
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 887777 5899999999865321 112222333344567778766 6655554 58999999962 22234455554
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEec
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVW 356 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~w 356 (357)
. ...+.+++|+|+++ +|++++ .++.|.+|
T Consensus 304 ~-g~~~~~~~~spdg~-------~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 304 T-GIHPRNFIITPNGK-------YLLVACRDTNVIQIF 333 (361)
T ss_dssp C-SSCCCEEEECTTSC-------EEEEEETTTTEEEEE
T ss_pred C-CCCCceEEECCCCC-------EEEEEECCCCCEEEE
Confidence 4 56788999999998 776665 77899996
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-20 Score=153.24 Aligned_cols=255 Identities=11% Similarity=0.100 Sum_probs=162.7
Q ss_pred CccceeEEEEe--cceEEEeeC--C-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEee-cCCeEEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASL--N-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAH-QDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~--d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-~d~~i~vw 97 (357)
+...+..++|+ |++++++.. + .|++|++ ++++ .+..+.. +...+..++|+|++ |++++ .++.+.+|
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~~---~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVVA---PGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEEE---ESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEe-cCCcEEEeeeeec---CCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 55667889999 664444432 6 9999999 6654 3444444 67788999999987 66666 78999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcC-cchh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS-NYKC 174 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~ 174 (357)
++........+........ . .....+...+.+++|+| +++++...++.|.+||+. +++.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~-----------------~-p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGH-----------------G-PRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp EECTTSCEEEEEEEECCCC-----------------C-SSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred EeCCCCCeeecceeecCCC-----------------C-CCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 9964332222222110000 0 00002334688999999 655555568899999998 4432
Q ss_pred h--hhccccccccEEEEEEecCCe-EEE-EeCCCeEEEEEccccccccccccceeeeeEeeccc------cceeEEEEec
Q 038568 175 L--ESVNKAHEDAVNAVVVSDNGV-VYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR------STVNALALNG 244 (357)
Q Consensus 175 ~--~~~~~~~~~~v~~~~~~~~~~-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~ 244 (357)
. ..+.......+..++|+|++. +++ ...++.|.+|++.. ..........+.... ..+..++|+|
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET------TTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC------CCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 2 111122334678899999994 444 56789999999872 111122222222222 4588999999
Q ss_pred CCCEEE-EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC-CCeEEEeeC--CCCc
Q 038568 245 DGSLLF-SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA-DRTVRIWQR--GKEN 310 (357)
Q Consensus 245 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~-dg~i~vw~~--~~~~ 310 (357)
+|++|+ +...++.|.+|++...........+..+...+..++|+++ +|++++. ++.|.+|++ .+++
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 999775 5556899999999744333445555555556777888766 6766665 589999954 4553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=156.53 Aligned_cols=218 Identities=10% Similarity=0.004 Sum_probs=155.4
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
.++.|++|++||+.+++..... .|...+.+++|+| ++|++++ ++.|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~-------------------------------~~~~~v~~~~~spdg~~l~~~~-~~~i 64 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW-------------------------------QTPELFEAPNWSPDGKYLLLNS-EGLL 64 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE-------------------------------EESSCCEEEEECTTSSEEEEEE-TTEE
T ss_pred CCCcceeEEEEeCCCCceeeec-------------------------------cCCcceEeeEECCCCCEEEEEc-CCeE
Confidence 4567899999999887643222 6678899999999 6677765 8899
Q ss_pred EEEEcCc-chhhhhccccccccEEEEEEecCC-eEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 165 KIWNASN-YKCLESVNKAHEDAVNAVVVSDNG-VVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
.+||+.+ ++........+...+.+++|+|++ +|++++ .++...+|.+.. . ......+.. ...+..+
T Consensus 65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~------~---~~~~~~~~~-~~~~~~~ 134 (297)
T 2ojh_A 65 YRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS------T---GGTPRLMTK-NLPSYWH 134 (297)
T ss_dssp EEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET------T---CCCCEECCS-SSSEEEE
T ss_pred EEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC------C---CCceEEeec-CCCccce
Confidence 9999998 776655522234778999999999 577777 345666666541 0 111222332 3348889
Q ss_pred EEecCCCEEE-EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEec-CCCeEEEeeCCCCcceeeee
Q 038568 241 ALNGDGSLLF-SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 241 ~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~~~~~~~~ 316 (357)
+|+|++++|+ ++..++.+++|+++.... ....+..+...+.++.|+++ +|+.++ .++.+++|++.... ..+.
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~ 210 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVE 210 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEE
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcE
Confidence 9999999877 778899999999753221 22345567778888999876 565554 68999999986321 3355
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC-----------CeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN-----------GEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-----------g~v~~wd 357 (357)
.+..|...+..++|+|+++ +|++++.+ +.|.+||
T Consensus 211 ~~~~~~~~~~~~~~s~dg~-------~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSGD-------KVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp ECCCCSEEEEEEEECTTSS-------EEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred EEecCCcccCCeEECCCCC-------EEEEEEcCCCCCcccccCceEEEEEe
Confidence 6677888899999999998 88877765 4688885
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-20 Score=152.53 Aligned_cols=247 Identities=7% Similarity=0.025 Sum_probs=163.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccc-cceeccccCCCCceEEEEEecCc--
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSH-VDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
.+++....+.. +...+ +++|+ ++++++++. + .|.+||. .+++. ...+.. +..+..+++|+|++
T Consensus 28 ~~~~~~~~~~~-----~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~---~~~~~~~~~~s~dg~~ 97 (331)
T 3u4y_A 28 DTLEILNQITL-----GYDFV-DTAITSDCSNVVVTSDFCQTLVQIET-QLEPPKVVAIQE---GQSSMADVDITPDDQF 97 (331)
T ss_dssp TTCCEEEEEEC-----CCCEE-EEEECSSSCEEEEEESTTCEEEEEEC-SSSSCEEEEEEE---CSSCCCCEEECTTSSE
T ss_pred cccceeeeEEc-----cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC-CCCceeEEeccc---CCCCccceEECCCCCE
Confidence 34555566554 45556 99998 776766665 6 9999999 88777 666665 66666669999987
Q ss_pred eEEeecCC---eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE-E
Q 038568 85 IFTAHQDC---KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS-V 158 (357)
Q Consensus 85 l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~ 158 (357)
++++..++ .|.+||+.+++....+. ......+++|+| +++++ .
T Consensus 98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 98 AVTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------IPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------CCTTEEEEEECTTSSCEEEEE
T ss_pred EEEecCCCCcccEEEEECCCCCeEEEEE-------------------------------CCCCccceEECCCCCEEEEEe
Confidence 66554442 89999998876544332 223458999999 44554 4
Q ss_pred ecCCe-EEEEEcCcchhhh----hccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEee
Q 038568 159 SWDRS-FKIWNASNYKCLE----SVNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 159 ~~dg~-i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
..++. |.+|++.....+. .. .........++|+|++. + +++..++.|++||+.. ... ...+..+.
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~------~~~-~~~~~~~~ 218 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN------PEN-ITLLNAVG 218 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS------TTS-CEEEEEEE
T ss_pred cCCCceEEEEEECCCCcEeecCCcc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC------Ccc-cceeeecc
Confidence 55588 9999987533321 11 23345678999999994 4 4555689999999872 111 11133444
Q ss_pred ccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeeccCC----ccce---EEEeecCc--eE-EEecCCCe
Q 038568 232 KHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEALWGH----TGAL---LCLINVGD--LL-ASGSADRT 300 (357)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~----~~~v---~~~~~~~~--~l-~~~~~dg~ 300 (357)
....+..++|+|+|++|+++. .++.|.+||+.+++... ...+..+ .... ..++|+++ +| +++..++.
T Consensus 219 -~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 296 (331)
T 3u4y_A 219 -TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE 296 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred -CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-ecccccccccCCCCcccccceEECCCCCEEEEecCCCCc
Confidence 346678999999999776655 57889999998775421 1111111 1221 33555554 55 55566789
Q ss_pred EEEeeCCCC
Q 038568 301 VRIWQRGKE 309 (357)
Q Consensus 301 i~vw~~~~~ 309 (357)
|.+||+...
T Consensus 297 v~v~d~~~~ 305 (331)
T 3u4y_A 297 LKVFTISGK 305 (331)
T ss_dssp EEEEETTSC
T ss_pred EEEEEecCC
Confidence 999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-20 Score=153.75 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=166.3
Q ss_pred CCCceEEEEEecCc--eEEeec-------CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQ-------DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
....+..++|+|++ +++++. ++.|.+||..+++....+..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------------- 87 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------------------------- 87 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-------------------------------
Confidence 45578899999986 555552 67899999998876554432
Q ss_pred cccEEEEEEec--C-eEEEEecCCeEEEEEcCcchhhhhccccccc--------cEEEEEEecCC-eEEEEe--CCCeEE
Q 038568 142 WDAVSDLVVKQ--G-LMYSVSWDRSFKIWNASNYKCLESVNKAHED--------AVNAVVVSDNG-VVYTGS--ADGRIR 207 (357)
Q Consensus 142 ~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~-~l~~~~--~d~~i~ 207 (357)
...+..+++++ + .+++...++.|.+||..+++.+..+...... .+.+++++|++ ++++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 23356788888 5 4455566799999999998887776322211 27889999998 455554 588999
Q ss_pred EEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee-ccCCccceEEEe
Q 038568 208 VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA-LWGHTGALLCLI 286 (357)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~ 286 (357)
+||+. ..+....+..+...+.+++|+|++++|++++.++.|.+||+.+++....... ..++...+..++
T Consensus 168 ~~d~~----------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 168 VVDGG----------NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EEETT----------TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE
T ss_pred EEcCC----------CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE
Confidence 99987 3444555554556688999999999999999999999999998775433332 112455566677
Q ss_pred ecCc--eEEEe-cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASG-SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++++ +++++ ..++.|.+||..+++. +..+.... ...++|+|+++ .++++...++.|.+||
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~--~~~~~~s~dg~------~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNI---LAKVAAPE--SLAVLFNPARN------EAYVTHRQAGKVSVID 300 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCE---EEEEECSS--CCCEEEETTTT------EEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEEcCC--CceEEECCCCC------EEEEEECCCCeEEEEE
Confidence 7654 55444 4569999999998743 33333322 25799999987 3455666799999996
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=156.64 Aligned_cols=258 Identities=9% Similarity=0.026 Sum_probs=166.0
Q ss_pred EEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceEEEEEecCc---eEEeecCCeEEEEecCCccceee
Q 038568 35 LAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 35 ~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
++++ +.++++++.+ .|++||. .+++.+..+.. +. ..+..++|+|++ +++...++.|.+||+.+++....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDV-ASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEET-TTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEEC-CCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4455 6788888888 9999999 88888877764 22 257899999986 45556789999999988765443
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC------------CeEEEEEcCcch
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD------------RSFKIWNASNYK 173 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d------------g~i~iwd~~~~~ 173 (357)
+...... ......+..++|+| +++++++.+ +.|.+||+.+++
T Consensus 81 ~~~~~~~------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 81 ANLSSVP------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EESCCST------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEccccc------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 3211000 00123467889998 678888765 899999999866
Q ss_pred hhhhcc-ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc------------------
Q 038568 174 CLESVN-KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR------------------ 234 (357)
Q Consensus 174 ~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------------ 234 (357)
....+. ..+...+.+++|+|++.+++++. .|.+||+... +....+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 137 EAKPVRTFPMPRQVYLMRAADDGSLYVAGP--DIYKMDVKTG----------KYTVALPLRNWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp GBCCSEEEECCSSCCCEEECTTSCEEEESS--SEEEECTTTC----------CEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred ccceeeeccCCCcccceeECCCCcEEEccC--cEEEEeCCCC----------ceeccccccccCCccccCccceeeecCC
Confidence 544321 13344688999999997666543 4999998722 2222222111
Q ss_pred ------cceeEEEEecCCCE-----------EEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-c--eEEE
Q 038568 235 ------STVNALALNGDGSL-----------LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-D--LLAS 294 (357)
Q Consensus 235 ------~~v~~~~~~~~~~~-----------l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~l~~ 294 (357)
.....+++++++.. +.....++.+++|++. .+...+..+.+++ + ++++
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA------------DLTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE------------ECSSCEEEEEECSSCTTEEEE
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc------------cCCCcceeeEecCCCCCEEEE
Confidence 02344666654421 1122223344444332 2334556666666 4 6776
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ ++.|.+||+.++ +.+..+.. ...+.+++|+|+++ +|++++.++.|++||
T Consensus 273 ~--~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~-------~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 273 V--LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGD-------KLYLGGTFNDLAVFN 322 (349)
T ss_dssp E--ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSS-------CEEEESBSSEEEEEE
T ss_pred E--cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCC-------EEEEecCCCeEEEEe
Confidence 6 889999999987 43444432 34578999999987 777788899999997
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-20 Score=167.31 Aligned_cols=281 Identities=7% Similarity=-0.038 Sum_probs=172.8
Q ss_pred cceecccccCCCCCCCcc---ceeEEEEe--cceEEEeeC---------C-ceEEEeccCCccccceeccccCCCCceEE
Q 038568 13 KHHCIASLKIPSPDPHHM---IISCLAVH--NSLLYAASL---------N-EINVFDLISDYSHVDTFSNDLSSSGSVKS 77 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~---~i~~~~~s--~~~l~t~~~---------d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~ 77 (357)
++++...+.. |.. .|.+++|+ |++|++++. + .|.+||+ ++++. ..+.....|...+..
T Consensus 46 ~g~~~~~~~~-----~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~-~~l~~~~~~~~~~~~ 118 (723)
T 1xfd_A 46 TNTSTVLIEG-----KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI-PHGDP-QSLDPPEVSNAKLQY 118 (723)
T ss_dssp GCCCEEEECT-----TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES-SSCCC-EECCCTTCCSCCCSB
T ss_pred CCcEEEEecc-----ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC-CCCce-EeccCCccccccccc
Confidence 4455555553 544 49999999 999999876 3 5779999 77665 333332225566899
Q ss_pred EEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc---------cccEE
Q 038568 78 ITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH---------WDAVS 146 (357)
Q Consensus 78 l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~ 146 (357)
++|+||+ |+.++. +.|++||+.+++.......... . .++.++ ...+.
T Consensus 119 ~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~--~-------------------~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE--G-------------------VIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp CCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT--T-------------------TEEEEECCHHHHHTTSSSSE
T ss_pred cEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC--C-------------------ceECcccceeEEEEeccCcc
Confidence 9999998 776665 8999999988765433221000 0 000011 11336
Q ss_pred EEEEec--CeEEEEecCC----------------------------------eEEEEEcCcchhhhhcccc------ccc
Q 038568 147 DLVVKQ--GLMYSVSWDR----------------------------------SFKIWNASNYKCLESVNKA------HED 184 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~ 184 (357)
+++|+| +.|++++.|+ .|++||+.+++....+ .. +..
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l-~~~~~~~~~~~ 255 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM-MPPDDPRMREY 255 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC-CCCCCGGGSSE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe-eCCccCCCccc
Confidence 788888 6677666442 7999999988765555 22 256
Q ss_pred cEEEEEEecCCe-EEEEeC----CCeEEEEEccccccccccccceeeeeEee-ccccce----eEEEEecCCCEEEE--E
Q 038568 185 AVNAVVVSDNGV-VYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTV----NALALNGDGSLLFS--G 252 (357)
Q Consensus 185 ~v~~~~~~~~~~-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~~~~~~~~~l~~--~ 252 (357)
.+..++|+|||. +++... +..|++||+. ..+....+. .+...+ ..++|+|||+.|+. +
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----------TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----------TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----------CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 789999999995 544432 3579999987 222222222 223333 37899999997765 4
Q ss_pred ecCC------eEEEEe-cccCCceeeeeeccCCccceE-EEeecCc--eEEEe-cCC--CeEEEeeCCCCcceeeeeeec
Q 038568 253 GCDR------WIVVWE-RERDHRMVFAEALWGHTGALL-CLINVGD--LLASG-SAD--RTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 253 ~~dg------~i~vwd-~~~~~~~~~~~~~~~~~~~v~-~~~~~~~--~l~~~-~~d--g~i~vw~~~~~~~~~~~~~~~ 319 (357)
..++ .|.+|| ...+... ....+..+...+. .++|+++ .|+.. ..+ +.+++|++...... ....+.
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~l~ 403 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSND-NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLS 403 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSC-CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSS
T ss_pred cccCCCcceeEEEEEeccCCCCcc-ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC-Ccceec
Confidence 4566 577777 3333200 0122222233333 3466655 66544 444 88999998753211 122233
Q ss_pred C---CcCceEEEEEeeCCC
Q 038568 320 G---HEKPVKSLVAISSSS 335 (357)
Q Consensus 320 ~---h~~~v~~~~~~~~~~ 335 (357)
. |...+..++|+|+++
T Consensus 404 ~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp TTSSSSCCCCEEEECTTSS
T ss_pred ccccCCCCeEEEEECCCCC
Confidence 2 667789999999987
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=166.84 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=159.6
Q ss_pred CCCceEEEEEecCc--eEEeec-CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQ-DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+..+|.+++|+||+ |++++. ||+++||++.+++.. .+.. .+...+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~-----------------------------~~~~~~~~ 69 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR-----------------------------EPINSVLD 69 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCS-----------------------------SCCSEECE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeec-----------------------------cccccccc
Confidence 45689999999997 887776 999999998655432 2210 33357889
Q ss_pred EEEec-CeEEEEec---CCeEEEEEcCc--chhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccc
Q 038568 148 LVVKQ-GLMYSVSW---DRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 148 ~~~~~-~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
+.|+| +.+++++. +....+|.+.. ......+ .........+|+|++ .+++.+.++.+.+||+. .
T Consensus 70 ~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~------~ 141 (582)
T 3o4h_A 70 PHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYALD------G 141 (582)
T ss_dssp ECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEEC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE------T
T ss_pred ccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc------C
Confidence 99999 56666664 45556665543 2111133 112223356777777 34444455555699987 1
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecC----CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
.+...... +.. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+..++|+|+ .|+
T Consensus 142 ----g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~----~l~~~~~~~~~~~~SpDG~~l~ 210 (582)
T 3o4h_A 142 ----GGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR----VFDSGEGSFSSASISPGMKVTA 210 (582)
T ss_dssp ----TEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE----EECCSSCEEEEEEECTTSCEEE
T ss_pred ----CcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce----EeecCCCccccceECCCCCEEE
Confidence 22222222 222 789999999999988877 78999999877632 44567888888999887 788
Q ss_pred EecCCC--eEEEeeCCCCcceeeeeeecCCcCceEEEE--------EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLV--------AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++..++ .|++||+.+++ .. .+.+|...+..+. |+||+. ++++++.||.+++|+
T Consensus 211 ~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-------~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGR-------LAVVARREGRSAVFI 273 (582)
T ss_dssp EEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSC-------EEEEEEETTEEEEEE
T ss_pred EccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCc-------EEEEEEcCCcEEEEE
Confidence 888888 89999999873 33 5667777777777 999997 999999999999995
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=149.48 Aligned_cols=243 Identities=9% Similarity=0.066 Sum_probs=163.6
Q ss_pred ccceecccccCCCCCCCcc-ceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccC--CCCceEEEEEecCc
Q 038568 12 FKHHCIASLKIPSPDPHHM-IISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLS--SSGSVKSITFHITK 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~-~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~ 84 (357)
.+.+.++.+.. + +.. .+.+++|+ +++++ +++.+ .|.+||+ .+++.+..+..... +...+..++|+|++
T Consensus 19 ~~~~~~~~~~~--~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 19 EKMAVDKVITI--A--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp TTTEEEEEEEC--T--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred CCCcEEEEEEc--C--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcccccccccceEECCCC
Confidence 34566666652 1 222 58889998 66654 55566 9999999 88887776653100 11267789999987
Q ss_pred --eEEee------------cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 85 --IFTAH------------QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 85 --l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
++++. .++.|.+||+.+++....+. ....+.+++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~ 142 (337)
T 1pby_B 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-------------------------------APRQITMLAW 142 (337)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-------------------------------CCSSCCCEEE
T ss_pred CEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-------------------------------CCCCcceeEE
Confidence 66664 57999999998776543332 1234667889
Q ss_pred ec--CeEEEEecCCeEEEEEcCcchhhhhccccc-cccEEEEEEecCCe-EEEEe-CCC---------------------
Q 038568 151 KQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH-EDAVNAVVVSDNGV-VYTGS-ADG--------------------- 204 (357)
Q Consensus 151 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~-~d~--------------------- 204 (357)
+| ++++++ ++.|.+||+.+++.+..+.... .. .+.|+|++. ++..+ .++
T Consensus 143 s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 143 ARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp CTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 98 667776 6899999999888776652222 12 236788874 43333 233
Q ss_pred --eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce
Q 038568 205 --RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL 282 (357)
Q Consensus 205 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 282 (357)
.|.+||+. .... . ...+..+...+.+++|+|++++++++ ++.|++||+.+++....+. ....+
T Consensus 218 ~~~v~~~d~~------~~~~--~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~ 282 (337)
T 1pby_B 218 RTGLLTMDLE------TGEM--A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSY 282 (337)
T ss_dssp EEEEEEEETT------TCCE--E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCC
T ss_pred ccceEEEeCC------CCCc--e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCce
Confidence 46888887 2211 1 23344566678899999999999888 7999999998876433322 12345
Q ss_pred EEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 283 LCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 283 ~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+++|+++ +|++++.++.|++||+.+++
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 66777655 78888889999999999874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-18 Score=144.54 Aligned_cols=271 Identities=9% Similarity=0.068 Sum_probs=164.6
Q ss_pred eEEEeeC--C-ceEEEecc-CCccccceeccc-cCCCCceEEEEEecCc--eEEeecCCeEEEEecC-CccceeeeeecC
Q 038568 41 LLYAASL--N-EINVFDLI-SDYSHVDTFSND-LSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT-ASRQHQLVSTLP 112 (357)
Q Consensus 41 ~l~t~~~--d-~i~iw~~~-~~~~~~~~~~~~-~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~-~~~~~~~~~~~~ 112 (357)
++++|+. + .|.+|++. ++++. ..+... ......+..++|+|++ |++++.+ .|.+|++. +++....... +
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l-~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~ 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC-KLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-P 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE-EEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-E
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE-EEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-e
Confidence 4555653 3 57777762 23332 222110 0133467899999987 7777777 99999997 5543221110 0
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C--eEEEEe-------------cCCeEEEEEcC-cchh
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G--LMYSVS-------------WDRSFKIWNAS-NYKC 174 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~-------------~dg~i~iwd~~-~~~~ 174 (357)
.+ +....++|+| + +++++. .+|.+.+|++. .++.
T Consensus 81 ---------------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~ 132 (365)
T 1jof_A 81 ---------------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL 132 (365)
T ss_dssp ---------------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE
T ss_pred ---------------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC
Confidence 00 1123466777 3 244443 68999999997 3554
Q ss_pred hhhccc---cccccEEEEEEecCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEee--ccccceeEEEEecCCC
Q 038568 175 LESVNK---AHEDAVNAVVVSDNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRSTVNALALNGDGS 247 (357)
Q Consensus 175 ~~~~~~---~~~~~v~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 247 (357)
...+.. .+...+.+++|+|+|. ++++. .++.|++||+.. ......+..+. .+...+..++|+|+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-------~g~~~~~~~~~~~~~g~~p~~~~~spdg~ 205 (365)
T 1jof_A 133 EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-------SGEVELVGSVDAPDPGDHPRWVAMHPTGN 205 (365)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-------TSCEEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-------CCCEEEeeeEecCCCCCCCCEeEECCCCC
Confidence 333311 2456789999999994 66554 468999999861 01112222232 2356689999999999
Q ss_pred EEEEEec-CCeEEEEecc--cCCce---eeeeecc----CCcc------ceEEEe-ecCc--eEEEecCC-C-----eEE
Q 038568 248 LLFSGGC-DRWIVVWERE--RDHRM---VFAEALW----GHTG------ALLCLI-NVGD--LLASGSAD-R-----TVR 302 (357)
Q Consensus 248 ~l~~~~~-dg~i~vwd~~--~~~~~---~~~~~~~----~~~~------~v~~~~-~~~~--~l~~~~~d-g-----~i~ 302 (357)
+|++++. ++.|.+|+++ +++.. ..+..+. +|.. .+..++ ++++ +|+++..+ + .|.
T Consensus 206 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~ 285 (365)
T 1jof_A 206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEE
Confidence 9888775 7899999875 34321 1122222 2222 466777 7766 66665532 2 899
Q ss_pred EeeCC-CCcceeeee-eecCCcCceEEEEEee---CCCCCCCCeEEEEEcCC-CCeEEecC
Q 038568 303 IWQRG-KENCYRCMA-FLEGHEKPVKSLVAIS---SSSSASNGIVSIGSGSL-NGEIKVWD 357 (357)
Q Consensus 303 vw~~~-~~~~~~~~~-~~~~h~~~v~~~~~~~---~~~~~~~~~~~l~s~~~-dg~v~~wd 357 (357)
+|++. +++ ...+. ....+...+..++|+| +++ +|++++. ++.|++|+
T Consensus 286 v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~-------~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 286 GFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDE-------WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTT-------EEEEECSSSCEEEEEE
T ss_pred EEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCC-------EEEEEEcCCCeEEEEE
Confidence 99996 443 22211 2334555677899999 787 7877775 58999985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-20 Score=167.02 Aligned_cols=270 Identities=10% Similarity=0.027 Sum_probs=172.8
Q ss_pred EEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCC---ceEEEEEecCc--eEEeec---------CCeEEE
Q 038568 34 CLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG---SVKSITFHITK--IFTAHQ---------DCKIRV 96 (357)
Q Consensus 34 ~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~--l~~~~~---------d~~i~v 96 (357)
+++|+ |++++++ .| .|++||+ .+++....+.. +.. .+.+++|+||+ |++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~-~~g~~~~~~~~---~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNI-ETGQSYTILSN---RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEES-SSCCEEEEECH---HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEc-CCCcEEEEEcc---ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67888 6555554 57 9999999 88887766664 433 48999999998 777765 789999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC 174 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 174 (357)
||+.+++..... .....+..++|+| +.|+.+. ++.|++||+.+++.
T Consensus 95 ~d~~~g~~~~~~-------------------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 95 YDLSNGEFVRGN-------------------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp EETTTTEECCSS-------------------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred EECCCCccccce-------------------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 999887541100 1123577899999 6777775 78999999988776
Q ss_pred hhhccccccccE-----------------EEEEEecCC-eEEEEeCCC--------------------------------
Q 038568 175 LESVNKAHEDAV-----------------NAVVVSDNG-VVYTGSADG-------------------------------- 204 (357)
Q Consensus 175 ~~~~~~~~~~~v-----------------~~~~~~~~~-~l~~~~~d~-------------------------------- 204 (357)
......++...+ .+++|+||| +|++++.|.
T Consensus 143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 543212322222 489999999 577776542
Q ss_pred --eEEEEEccccccccccccc-eeee---eEeeccccceeEEEEecCCCEEEEEecC----CeEEEEe----cccCCcee
Q 038568 205 --RIRVWERSVVDHNKERKSR-HMLV---TTLVKHRSTVNALALNGDGSLLFSGGCD----RWIVVWE----RERDHRMV 270 (357)
Q Consensus 205 --~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd----~~~~~~~~ 270 (357)
.|++||+.. .... ...+ ..+..|...+..++|+||++++++.... ..|.+|| +.+++...
T Consensus 223 ~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 223 VVRIFIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp EEEEEEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred eeEEEEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 788898872 1110 0001 1234577889999999998777764432 2488899 76655322
Q ss_pred eee-eccCCccceE-----EEeecCc--eEE--EecCCC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 271 FAE-ALWGHTGALL-----CLINVGD--LLA--SGSADR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 271 ~~~-~~~~~~~~v~-----~~~~~~~--~l~--~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
... ...+|...+. .+.|+++ .|+ +...+| .|.+||+.+++ ...+..+...+..+.+. +++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~--- 368 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQD--- 368 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSS---
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCC---
Confidence 221 0024555554 5566655 333 454555 57777776653 33445556668887777 665
Q ss_pred CCeEEEEEcCC----CCeEEecC
Q 038568 339 NGIVSIGSGSL----NGEIKVWD 357 (357)
Q Consensus 339 ~~~~~l~s~~~----dg~v~~wd 357 (357)
.+++++.. ++..++|.
T Consensus 369 ---~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 369 ---SLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ---EEEEEESCGGGCTTCBEEEE
T ss_pred ---EEEEEEecCCCCCceEEEEE
Confidence 24445544 47788773
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-17 Score=139.18 Aligned_cols=271 Identities=11% Similarity=0.087 Sum_probs=163.6
Q ss_pred ccceeEEEEe--cceEEEeeC----C-ceEEEeccCC--cc--ccceeccccCCCCceEEEEEecCceEEee-cCCeEEE
Q 038568 29 HMIISCLAVH--NSLLYAASL----N-EINVFDLISD--YS--HVDTFSNDLSSSGSVKSITFHITKIFTAH-QDCKIRV 96 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~----d-~i~iw~~~~~--~~--~~~~~~~~~~~~~~v~~l~~~~~~l~~~~-~d~~i~v 96 (357)
......++|+ |++|++++. + .|.+|++ +. ++ .+..... +......+++....|++++ .++.+.+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~-~~~~g~~~~~~~~~~---~~~~p~~~~~dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF-DKEKGTLHLLNTQKT---MGADPCYLTTNGKNIVTANYSGGSITV 124 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEE-ETTTTEEEEEEEEEC---SSSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEE-eCCCCcEEEeeEecc---CCCCcEEEEECCCEEEEEECCCCEEEE
Confidence 4556778998 888888886 3 8999998 44 32 2333332 5567778888222255554 6889999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~ 173 (357)
|++........+...... .+........+...+.+++|+| +++++++ .++.|.+|++....
T Consensus 125 ~~~~~~g~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEF----------------KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEBCTTSCBCSCSEEEEC----------------CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred EEeCCCCcCcccceeEEc----------------cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 999754432221110000 0000000012344578899999 5455544 58899999987543
Q ss_pred h------h------hhccccccccEEEEEEecCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEe---eccccc
Q 038568 174 C------L------ESVNKAHEDAVNAVVVSDNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTL---VKHRST 236 (357)
Q Consensus 174 ~------~------~~~~~~~~~~v~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~ 236 (357)
. + .............++|+|++. +++++ .++.|.+||+.. + .......+ ..+...
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~------g--~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD------G--MLDEIQTVAADTVNAQG 260 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET------T--EEEEEEEEESCSSCCCC
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC------C--ceEEeEEEecCCCCCCC
Confidence 2 1 111134456678999999994 65555 689999999871 1 11112222 233345
Q ss_pred eeEEEEecCCCEEEEEecC--CeEEEEeccc-CCceeeeeeccCCccceEEEeecCc--eEEEec-CCCeEEEeeCC--C
Q 038568 237 VNALALNGDGSLLFSGGCD--RWIVVWERER-DHRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTVRIWQRG--K 308 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~--~ 308 (357)
...++|+|+|++|+++..+ +.|.+|++.. .........+.. ...+..++|+++ +|++++ .++.|.+|++. +
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 6899999999988776654 8999999962 222223333333 345667777765 666666 67999996554 5
Q ss_pred Ccceeeeeee-cCCcCceEEEEEe
Q 038568 309 ENCYRCMAFL-EGHEKPVKSLVAI 331 (357)
Q Consensus 309 ~~~~~~~~~~-~~h~~~v~~~~~~ 331 (357)
++ ..... ..+...+.|+.|.
T Consensus 340 g~---~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GL---LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CC---EEECSCCEECSSEEEEEEE
T ss_pred Cc---EeecceeeeCCCCeEEEEc
Confidence 42 22211 2244568888886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-19 Score=160.44 Aligned_cols=278 Identities=9% Similarity=0.011 Sum_probs=172.3
Q ss_pred eeEEEEe--cceEEEeeC---------C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEE
Q 038568 32 ISCLAVH--NSLLYAASL---------N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVW 97 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~---------d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vw 97 (357)
|.+++|| |++|+.++. + .|++||+ ++++.+.... ....+..++|+||+ |+.+ .++.|++|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~~~----l~~~~~~~~~SPDG~~la~~-~~~~i~~~ 135 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNE----LPRPIQYLCWSPVGSKLAYV-YQNNIYLK 135 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET-TTTEECCSSC----CCSSBCCEEECSSTTCEEEE-ETTEEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC-CCCcccccee----cCcccccceECCCCCEEEEE-ECCeEEEE
Confidence 9999999 999998876 7 9999999 7776532122 23468899999998 6665 47899999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc---------cEEEEEEec--CeEEEEecCC----
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD---------AVSDLVVKQ--GLMYSVSWDR---- 162 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~--~~l~~~~~dg---- 162 (357)
++.+++........ ....++.++.. ...+++|+| +.|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~---------------------~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 136 QRPGDPPFQITFNG---------------------RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp SSTTSCCEECCCCC---------------------BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred eCCCCCcEEEecCC---------------------CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 99887653321110 00011112222 225789999 7788877552
Q ss_pred ------------------------------eEEEEEcCcchhh--------hhccccccccEEEEEEecCCeEE-EEeC-
Q 038568 163 ------------------------------SFKIWNASNYKCL--------ESVNKAHEDAVNAVVVSDNGVVY-TGSA- 202 (357)
Q Consensus 163 ------------------------------~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~l~-~~~~- 202 (357)
.|++||+.+++.. ..+ ..+...+..++|+||++++ +...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI-ASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH-HTSCEEEEEEEESSSSEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC-CCCcceEEEeEEeCCCeEEEEEecc
Confidence 7899999988764 223 3577789999999999644 4222
Q ss_pred -C--CeEEEEE----ccccccccccccceeeeeEe----ecccccee-----EEEEecCCCEEEE--EecCC--eEEEEe
Q 038568 203 -D--GRIRVWE----RSVVDHNKERKSRHMLVTTL----VKHRSTVN-----ALALNGDGSLLFS--GGCDR--WIVVWE 262 (357)
Q Consensus 203 -d--~~i~i~d----~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd 262 (357)
+ ..|.+|| +.. .+..... ..|...+. .+.|+|||+.|+. ...+| .|.+||
T Consensus 274 ~~~~~~l~~~d~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQT----------WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp STTEEEEEEEEECSSSSS----------EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred ccCeEEEEEEcccCCCCC----------CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 2 2488888 551 1222222 35666666 7899999996554 44555 577778
Q ss_pred cccCCceeeeeeccCCccceEEEee-cCceEEEecC-----CCeEEEeeCCC--Cc-ceeeeee-ecCCcCceEEEEEee
Q 038568 263 RERDHRMVFAEALWGHTGALLCLIN-VGDLLASGSA-----DRTVRIWQRGK--EN-CYRCMAF-LEGHEKPVKSLVAIS 332 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~-----dg~i~vw~~~~--~~-~~~~~~~-~~~h~~~v~~~~~~~ 332 (357)
+.+++. ..+..+...+..+.+ +++.|+..+. ++..++|.+.. +. ..+++.. +.+|...+..+.|+|
T Consensus 344 ~~~~~~----~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 344 DTVENA----IQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp SCSTTC----EECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred CCCCce----EecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 776542 233334444544332 4444444443 48889998764 21 1122211 223667788999999
Q ss_pred CCCCCCCCeEEEEEcCCC--CeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLN--GEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~d--g~v~~wd 357 (357)
+++ .++++++.+ ..+.+||
T Consensus 420 dg~------~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 420 YAK------YYALVCYGPGIPISTLHD 440 (719)
T ss_dssp GGS------SEEEEECCBSSCEEEEEC
T ss_pred CCC------EEEEEcCCCCCCeEEEEE
Confidence 887 233344433 3555654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=146.34 Aligned_cols=280 Identities=8% Similarity=0.004 Sum_probs=173.8
Q ss_pred cceecccccCCCCCCCccceeE-----EEEe--cceEEEeeC-C---ceEEEeccCCccccceeccccCCCCceEEEEEe
Q 038568 13 KHHCIASLKIPSPDPHHMIISC-----LAVH--NSLLYAASL-N---EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~-----~~~s--~~~l~t~~~-d---~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
++.....+.. |...... .+|+ |++|+.++. + .|.+||+ .+++......+ +...+..+.|+
T Consensus 19 ~g~~~~~lt~-----~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~---~~~~~~~~~~s 89 (388)
T 3pe7_A 19 TGAQVTRLTP-----PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEG---RGDNTFGGFLS 89 (388)
T ss_dssp TCCEEEECSC-----TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEET-TTCEEEECCCS---SCBCSSSCEEC
T ss_pred CCcceEEecC-----CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeC-CCCceEEeeeC---CCCCccceEEc
Confidence 3455556654 5555554 7888 888888876 4 3888898 77777666654 55555577899
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE--Eec--CeE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV--VKQ--GLM 155 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~l 155 (357)
|++ |+.++.++.|.+||+.+++....... +...+.... +++ ..+
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~------------------------------~~~~~~~~~~~~~~dg~~l 139 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQV------------------------------PAEWVGYGTWVANSDCTKL 139 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEEC------------------------------CTTEEEEEEEEECTTSSEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeec------------------------------hhhcccccceeECCCCCee
Confidence 997 88888889999999998765433221 112221121 233 233
Q ss_pred EE----------------------EecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CCe-EEEEeCC------Ce
Q 038568 156 YS----------------------VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NGV-VYTGSAD------GR 205 (357)
Q Consensus 156 ~~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d------~~ 205 (357)
+. ...+..|.+||+.+++.... ..+...+..+.|+| ++. |+....+ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 21 23457899999998865433 35566789999999 884 6555543 36
Q ss_pred EEEEEccccccccccccceeeeeEeeccc--cceeEEEEecCCCEEEEEec-CC----eEEEEecccCCceeeeeeccCC
Q 038568 206 IRVWERSVVDHNKERKSRHMLVTTLVKHR--STVNALALNGDGSLLFSGGC-DR----WIVVWERERDHRMVFAEALWGH 278 (357)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~~~~~~~~~~~~~~~ 278 (357)
|.++|... .....+..+. ..+...+|+|||+.|+..+. ++ .|++||+.+++... +....++
T Consensus 218 l~~~d~~~-----------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~ 285 (388)
T 3pe7_A 218 MWLINEDG-----------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPAC 285 (388)
T ss_dssp EEEEETTS-----------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCE
T ss_pred EEEEeCCC-----------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCc
Confidence 77777651 1122222233 35778899999997765443 22 39999999876432 2222221
Q ss_pred ccce-----EEEeecCceEEEe---------cCCCeEEEeeCCCCcceeeeeeecCCcC-----------ceEEEEEeeC
Q 038568 279 TGAL-----LCLINVGDLLASG---------SADRTVRIWQRGKENCYRCMAFLEGHEK-----------PVKSLVAISS 333 (357)
Q Consensus 279 ~~~v-----~~~~~~~~~l~~~---------~~dg~i~vw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~ 333 (357)
.... ..++.+++.|+.. ..+..|++||+.+++. ..+..+.. .+.+++|+||
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE----EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce----EEeccccCcccccccccccCCCCccCCCC
Confidence 1100 1344445555532 5567899999998632 23333444 5788999999
Q ss_pred CCCCCCCeEEEE-EcCCCCeEEec
Q 038568 334 SSSASNGIVSIG-SGSLNGEIKVW 356 (357)
Q Consensus 334 ~~~~~~~~~~l~-s~~~dg~v~~w 356 (357)
++ .|+ ++..+|...||
T Consensus 362 g~-------~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 362 DK-------QILFTSDVHGKPALY 378 (388)
T ss_dssp SS-------EEEEEECTTSSCEEE
T ss_pred CC-------EEEEEecCCCceeEE
Confidence 98 555 45567777776
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-17 Score=135.18 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=153.5
Q ss_pred ccceeEEEEe--cceEEEeeCCceEEEeccC-CccccceeccccCCCCceEEEEEecCc----eEEee------------
Q 038568 29 HMIISCLAVH--NSLLYAASLNEINVFDLIS-DYSHVDTFSNDLSSSGSVKSITFHITK----IFTAH------------ 89 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~------------ 89 (357)
...+..++|+ |++|++++.+.|.+|++ + +++........ ..+.+.+++|+|++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~-~~~g~~~~~~~~~--~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAV-KSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEE-EETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEE-CCCCCEEEeeEee--cCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889998 88888888779999999 5 66554333210 11235568899986 23443
Q ss_pred -cCCeEEEEecCC-ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeE
Q 038568 90 -QDCKIRVWKITA-SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSF 164 (357)
Q Consensus 90 -~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i 164 (357)
.++.+.+|++.. ++....+.... ..+...+.+++|+| ++++++.. ++.|
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~--------------------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v 169 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYE--------------------------YQENTGIHGMVFDPTETYLYSADLTANKL 169 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEE--------------------------CCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cCCceEEEEccCCCCcCcceEeeEE--------------------------eCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence 689999999974 43322222110 02346788999999 56776654 6799
Q ss_pred EEEEcC-cchhh--hhccc-cccccEEEEEEecCC-eEEEEe-CCCeEEEEEccccccccccccc--eeeeeEee----c
Q 038568 165 KIWNAS-NYKCL--ESVNK-AHEDAVNAVVVSDNG-VVYTGS-ADGRIRVWERSVVDHNKERKSR--HMLVTTLV----K 232 (357)
Q Consensus 165 ~iwd~~-~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~----~ 232 (357)
.+||+. +++.. ..+.. .+...+..++|+|++ ++++++ .++.|.+|++.... +... ...+..+. +
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~g 245 (365)
T 1jof_A 170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT----HMPVYTHHSFPLIPPGIPD 245 (365)
T ss_dssp EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEEESSCTTCCC
T ss_pred EEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC----CcEEEccceEEcCCCCcCC
Confidence 999998 66532 22211 235678999999999 465655 47899999875100 0000 01111121 1
Q ss_pred ccc------ceeEEE-EecCCCEEEEEecCC------eEEEEecc-cCCceeeeeeccCCccceEEEeec-----CceEE
Q 038568 233 HRS------TVNALA-LNGDGSLLFSGGCDR------WIVVWERE-RDHRMVFAEALWGHTGALLCLINV-----GDLLA 293 (357)
Q Consensus 233 ~~~------~v~~~~-~~~~~~~l~~~~~dg------~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~ 293 (357)
+.. .+..++ |+|||++|+++..+. .|.+|++. +++..........+......++++ +++|+
T Consensus 246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 222 578999 999999888776432 89999996 443221111122222223334444 55888
Q ss_pred EecC-CCeEEEeeCCCC
Q 038568 294 SGSA-DRTVRIWQRGKE 309 (357)
Q Consensus 294 ~~~~-dg~i~vw~~~~~ 309 (357)
+++. ++.|.+|++...
T Consensus 326 v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSSCEEEEEEEETT
T ss_pred EEEcCCCeEEEEEEchh
Confidence 8776 489999999765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-16 Score=126.10 Aligned_cols=236 Identities=11% Similarity=0.139 Sum_probs=157.5
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
+-..+.++++++++ +++...++.|.+||.. ++....+.... ...++...+..+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~------------------------~~~~~~~~p~~i 82 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG------------------------KRDSQLLYPNRV 82 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS------------------------SSTTCBSSEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC------------------------CCcccccCceEE
Confidence 56678999999987 5555778999999987 43322221100 001345678899
Q ss_pred EEe-c-CeEEEEec--CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 149 VVK-Q-GLMYSVSW--DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 149 ~~~-~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
++. + ..++.+.. ++.|.+|| .+++.+..+...+...+..+++++++. +++...++.|.+||..
T Consensus 83 ~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----------- 150 (286)
T 1q7f_A 83 AVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN----------- 150 (286)
T ss_dssp EEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-----------
T ss_pred EEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-----------
Confidence 994 4 55555553 88999999 556666555333446789999999996 5555668899999964
Q ss_pred eeeeeEee--ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC
Q 038568 224 HMLVTTLV--KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 224 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg 299 (357)
......+. .+...+..++++|+++++++...++.|++||... +....+ ...++......++++++ ++++...++
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI-GGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE-SCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE-ccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 12222332 3445689999999999888878899999999853 322111 11222345677777665 666666665
Q ss_pred -eEEEeeCCCCcceeeeeeecCC--cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 300 -TVRIWQRGKENCYRCMAFLEGH--EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 300 -~i~vw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.+|+.. + +.+..+..+ ...+.+++++|++. ++++ +.|+.|++|+
T Consensus 229 ~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i~~~~~g~-------l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 229 FNLTIFTQD-G---QLISALESKVKHAQCFDVALMDDGS-------VVLA-SKDYRLYIYR 277 (286)
T ss_dssp CEEEEECTT-S---CEEEEEEESSCCSCEEEEEEETTTE-------EEEE-ETTTEEEEEE
T ss_pred EEEEEECCC-C---CEEEEEcccCCCCcceeEEECCCCc-------EEEE-CCCCeEEEEE
Confidence 99999964 3 223333333 23478999999986 7777 5699999995
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-17 Score=134.00 Aligned_cols=237 Identities=10% Similarity=0.068 Sum_probs=153.0
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCC-----CCceEEEEEec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSS-----SGSVKSITFHI 82 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~ 82 (357)
.+++.++.+.. + ....+..++|+ +++++ ++..+ .|.+||+ .+++.+..+... + ...+..++|+|
T Consensus 29 ~~~~~~~~~~~--~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~-~t~~~~~~~~~~--~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 29 ASDTVYKSCVM--P--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-DTCKNTFHANLS--SVPGEVGRSMYSFAISP 101 (349)
T ss_dssp TTTEEEEEEEC--S--SCCSSCEEEECTTSSEEEEEETTTTEEEEEET-TTTEEEEEEESC--CSTTEEEECSSCEEECT
T ss_pred CCCcEEEEEec--C--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeC-CCCcEEEEEEcc--cccccccccccceEECC
Confidence 34566666653 1 11257889998 66555 44466 9999999 888777766530 2 23378899999
Q ss_pred Cc--eEEeecC------------CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 83 TK--IFTAHQD------------CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 83 ~~--l~~~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
++ |++++.+ +.|.+||+.+++....+... .+...+.++
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~ 153 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF----------------------------PMPRQVYLM 153 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE----------------------------ECCSSCCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec----------------------------cCCCcccce
Confidence 87 7777755 89999999876543333221 223457888
Q ss_pred EEec-CeEEEEecCCeEEEEEcCcchhhhhccccccc-----------------------cEEEEEEecCCe--------
Q 038568 149 VVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHED-----------------------AVNAVVVSDNGV-------- 196 (357)
Q Consensus 149 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~v~~~~~~~~~~-------- 196 (357)
+|+| ..+++++ +.|.+||+.+++.+..+...... ....+++++++.
T Consensus 154 ~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 154 RAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp EECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred eECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 9999 3366654 34999999988776655211100 234455554431
Q ss_pred ----EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceee
Q 038568 197 ----VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 197 ----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
+.....++.+++|++. .+...+..++|+| ++++++++ ++.|.+||+.+++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA-------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE-------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred ceeEEEEeccCCcEEecccc-------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 1122233444444432 2455688999999 99999888 88999999998764333
Q ss_pred eeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
+. ....+.+++++++ +|++++.++.|++||+.+++
T Consensus 291 ~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 291 AN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred Ec----CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 22 1223456777655 77778889999999999873
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-16 Score=127.19 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=161.0
Q ss_pred CCCceEEEEEecCc--eEEeecC------------------------CeEEEEecCCccceeeeeecCccccceeeeecC
Q 038568 71 SSGSVKSITFHITK--IFTAHQD------------------------CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.-+.+.+++++|++ +++...+ ++|.+||..+++......
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------- 86 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------------- 86 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---------------
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---------------
Confidence 45679999999987 4444445 357778776665432221
Q ss_pred CCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-hhhhcc--------ccccccEEEEEEec
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-CLESVN--------KAHEDAVNAVVVSD 193 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~ 193 (357)
..+......+++++ +++++...++.|++||..... .+..+. ..+-.....++++|
T Consensus 87 --------------~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 87 --------------KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp --------------TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT
T ss_pred --------------CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC
Confidence 13445678999998 667777778999999985432 344331 12334688999999
Q ss_pred -CCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEee----------ccccceeEEEEecC-CCEEEEEecCCeEE
Q 038568 194 -NGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLV----------KHRSTVNALALNGD-GSLLFSGGCDRWIV 259 (357)
Q Consensus 194 -~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 259 (357)
++. +++.+ .++.|++||.. ...+..+. .+-.....++++|+ ++++++...++.|+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~~~-----------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFSPS-----------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221 (329)
T ss_dssp TTCCEEEEECSSCCEEEEECTT-----------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCeEEEEeCCCCCeEEEEcCC-----------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence 776 44444 58999999954 22222222 12234789999998 77777777899999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCceEE-E-------ecCCCeEEEeeCCCCcceeeeeee---cCCcCceEEE
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGDLLA-S-------GSADRTVRIWQRGKENCYRCMAFL---EGHEKPVKSL 328 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~-------~~~dg~i~vw~~~~~~~~~~~~~~---~~h~~~v~~~ 328 (357)
+||..+++....+. ...+...+..+++.|..++ + ...+..|++|+..+++ .+..+ .++...+.+|
T Consensus 222 ~~~~~~G~~~~~~~-~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 222 CFKTDTKEFVREIK-HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---IIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp EEETTTCCEEEEEC-CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC---EEEEECCSSSCCSSEEEE
T ss_pred EEECCCCcEEEEEe-ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---EEEEEcCCCCccCCeeEE
Confidence 99998776443322 2345556777777775322 2 2334589999999874 44444 4677789999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++|++. ++++...++.|++|+
T Consensus 298 a~~~dG~-------lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 298 VASEDGT-------VYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECTTSE-------EEEEESSSCCEEEEE
T ss_pred EECCCCC-------EEEEECCCCEEEEEe
Confidence 9999987 889999999999985
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-16 Score=142.34 Aligned_cols=277 Identities=8% Similarity=-0.020 Sum_probs=171.0
Q ss_pred CccceeEEEEecce--EEEe--eCC-ceEEEeccCCccccceeccccCCCCceE---------EEEEe--cCc-e-EEee
Q 038568 28 HHMIISCLAVHNSL--LYAA--SLN-EINVFDLISDYSHVDTFSNDLSSSGSVK---------SITFH--ITK-I-FTAH 89 (357)
Q Consensus 28 h~~~i~~~~~s~~~--l~t~--~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~-l-~~~~ 89 (357)
|...|..++++++. +++. +.+ ...||.. ..+.....+.. +...+. ...|+ ||+ . +..+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRR-RADGAEESALP---APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEE-CTTSCEEESSC---TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEE-CCCCCcceeCC---CCccccccccccCCccceeeeecCCCeEEEEE
Confidence 88999999999443 3333 336 8999986 44444555554 555555 56666 775 3 4444
Q ss_pred c--CCeEEEEecC--C-ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC-
Q 038568 90 Q--DCKIRVWKIT--A-SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD- 161 (357)
Q Consensus 90 ~--d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d- 161 (357)
. +..|.+|++. + ++ ...+...+. ..|...+.+++|+| +.|+.++.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------------------~~~~~~~~~~~~spDg~~l~~~~~~~ 151 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------------------VGGGLRWADPVLLPERGEVWCMAEEF 151 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCC-------------------------STTCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------------------CCCCccccCcEECCCCCEEEEEEecc
Confidence 4 4456666654 2 32 222221100 01567788999999 788888876
Q ss_pred ---------CeEEEEEcCc------chhhhhccc-cccccEEEEEEecCC-eEEEEeCC--------CeEEEEEcccccc
Q 038568 162 ---------RSFKIWNASN------YKCLESVNK-AHEDAVNAVVVSDNG-VVYTGSAD--------GRIRVWERSVVDH 216 (357)
Q Consensus 162 ---------g~i~iwd~~~------~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------~~i~i~d~~~~~~ 216 (357)
..|.+||+.+ ++ ...+ . .+...+..++|+||| +|+.++.+ ..|++||+.
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~---- 225 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSA-VREL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT---- 225 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGG-SEES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC----
T ss_pred cCCCCCCceeEEEEEECCCCccccCCc-eeEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC----
Confidence 5899999987 44 3444 3 455678889999999 47666644 379999986
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC--eEEEEecccCCceeeeeeccCCccc--------eEEEe
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR--WIVVWERERDHRMVFAEALWGHTGA--------LLCLI 286 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~--------v~~~~ 286 (357)
..............+...+..++|+|||++++++..++ .|.+||+.+++... ....+... +..++
T Consensus 226 --~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~---l~~~~~~~~~p~w~~~~~~~~ 300 (662)
T 3azo_A 226 --EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ---LCRREEEFAGPLWTPGMRWFA 300 (662)
T ss_dssp --TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE---SSCCSSBSSCCCCSTTCCSEE
T ss_pred --CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee---cccccccccCccccccCceEe
Confidence 10000123333344567899999999999888888888 67777765554221 11122111 34556
Q ss_pred ecC--ceEEEecCCCeEEEe--eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 287 NVG--DLLASGSADRTVRIW--QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 287 ~~~--~~l~~~~~dg~i~vw--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+++ .+++++.. +.++|| |+.++ + +..+..|...+..+. ++++. ..++++++.+....+|
T Consensus 301 ~~~~~~~~~~~~~-~~~~l~~~d~~~~---~-~~~l~~~~~~~~~~~-s~~~~-----~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 301 PLANGLIAVVHGK-GAAVLGILDPESG---E-LVDAAGPWTEWAATL-TVSGT-----RAVGVAASPRTAYEVV 363 (662)
T ss_dssp ECTTSCEEEEEBS-SSCEEEEEETTTT---E-EEECCSSCCEEEEEE-EEETT-----EEEEEEEETTEEEEEE
T ss_pred EeCCCEEEEEEEc-CccEEEEEECCCC---c-EEEecCCCCeEEEEE-ecCCC-----EEEEEEcCCCCCCEEE
Confidence 654 38888888 999999 54443 2 456677777787761 44432 1245555566555544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-15 Score=119.56 Aligned_cols=235 Identities=13% Similarity=0.149 Sum_probs=157.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccc---cCCCCceEEEEEe-cCc-eEEeec--CCeEEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSND---LSSSGSVKSITFH-ITK-IFTAHQ--DCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~---~~~~~~v~~l~~~-~~~-l~~~~~--d~~i~vw 97 (357)
+-..+.+++++ ++++++...+ .|.+||. + ++.+..+... ..+...+..+++. +++ |+.+.. ++.|.+|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDK-E-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECT-T-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECC-C-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 55779999998 7777777777 9999998 5 4555555321 1244678999995 565 555543 7899999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
|. +++....+.. .+...+.++++.+ +++++...++.|.+||.. ++.+
T Consensus 106 d~-~g~~~~~~~~-----------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 154 (286)
T 1q7f_A 106 NQ-YGQFVRKFGA-----------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVL 154 (286)
T ss_dssp CT-TSCEEEEECT-----------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CC-CCcEEEEecC-----------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence 94 4443322211 2335678999998 556666678899999964 4444
Q ss_pred hhccc-cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeecc--ccceeEEEEecCCCEEEE
Q 038568 176 ESVNK-AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH--RSTVNALALNGDGSLLFS 251 (357)
Q Consensus 176 ~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 251 (357)
..+.. .+...+..+++++++. +++...++.|++||.. ...+..+..+ ...+..++++++|+++++
T Consensus 155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-----------g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-----------GQYLRQIGGEGITNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-----------CCEEEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-----------CCEEEEEccCCccCCCcEEEECCCCCEEEE
Confidence 44411 3345689999999996 5555678999999975 1223333322 356889999999998888
Q ss_pred EecCC-eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 252 GGCDR-WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 252 ~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
...++ .|.+||.. ++.+..+.. ......+.+++++++ ++++ +.|+.|++|++...
T Consensus 224 ~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 224 DNHNNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECSSSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eCCCCEEEEEECCC-CCEEEEEcc-cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 87776 99999965 443322222 112223566777665 5555 67999999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-16 Score=128.33 Aligned_cols=257 Identities=11% Similarity=0.055 Sum_probs=167.8
Q ss_pred CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecCCccceeeeeecCc
Q 038568 47 LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKITASRQHQLVSTLPT 113 (357)
Q Consensus 47 ~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~ 113 (357)
.| .|.+||. .+++.+..+.. +..+ .++|+|++ ++++. .++.|.+||..+.+....+...+.
T Consensus 29 ~d~~v~v~D~-~t~~~~~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 29 TESRVHVYDY-TNGKFLGMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GGCEEEEEET-TTCCEEEEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred ccCeEEEEEC-CCCeEEEEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 36 8999999 88888888775 5555 89999997 66654 367899999988776555543210
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhhh-ccccccccEEE
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLES-VNKAHEDAVNA 188 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~ 188 (357)
. ..+......++++| ++|+++.. ++.|.+||+.+++.+.. + . ... ...
T Consensus 103 ~------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i-~-~~~-~~~ 155 (361)
T 2oiz_A 103 R------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT-A-AAG-CWS 155 (361)
T ss_dssp B------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG-G-GTT-EEE
T ss_pred c------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe-c-CCC-cce
Confidence 0 01223456788988 77877764 58999999999988776 5 2 222 223
Q ss_pred EEEecCC--eEEEEeCCCeEEEEEccccccccccccceeee---eEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 189 VVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLV---TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 189 ~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
+.+.|++ .+++.+.||.+.+|++... +. ..... ..+.....++ .+.+++++..++..+.++.|.++|+
T Consensus 156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 156 VIPQPNRPRSFMTICGDGGLLTINLGED-----GK-VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp EEECTTSSSEEEEEETTSSEEEEEECTT-----SS-EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred eEEcCCCCeeEEEECCCCcEEEEEECCC-----Cc-EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEe
Confidence 5567766 5888899999999987511 00 00000 1112222222 3445677877777888999999999
Q ss_pred ccCCceeeeeecc------------CCccceEEEeecCceEEEecC-----------CCeEEEeeCCCCcceeeeeeecC
Q 038568 264 ERDHRMVFAEALW------------GHTGALLCLINVGDLLASGSA-----------DRTVRIWQRGKENCYRCMAFLEG 320 (357)
Q Consensus 264 ~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~~~~ 320 (357)
...... ....+. ........+..+++.++++.. .+.|.+||+.+. +.+..+..
T Consensus 229 ~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~ 304 (361)
T 2oiz_A 229 SGDEVK-VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPG 304 (361)
T ss_dssp SSSSCE-EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEEC
T ss_pred cCCCce-ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEec
Confidence 754321 111110 001111334444444444322 358999999987 66777777
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. +.+++|+|+++ +|++++. +.|.+||
T Consensus 305 ~~--p~~ia~spdg~-------~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 305 RD--ALSMTIDQQRN-------LMLTLDG-GNVNVYD 331 (361)
T ss_dssp TT--CCEEEEETTTT-------EEEEECS-SCEEEEE
T ss_pred CC--eeEEEECCCCC-------EEEEeCC-CeEEEEE
Confidence 76 89999999998 8888776 9999997
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=138.63 Aligned_cols=299 Identities=9% Similarity=-0.025 Sum_probs=168.0
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeC---C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL---N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~---d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
.+++.++.+.......|...+.+++|+ |++|+.... + .|.+||+ .+++....... +......+.|+|++
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~---~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEG---KGDNTFGGFISTDER 93 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEET-TTTEEEECCCS---SCBCTTTCEECTTSS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEEC-CCCcEEEeecC---CCCccccceECCCCC
Confidence 344445555431111123347888998 888776642 3 7888898 77665443332 22223347899987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC-eEEEecccccccccccccEEEEEEec--CeEEEE--
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN-YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV-- 158 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-- 158 (357)
|+.++.++.|.+||+.+++.......... ..+.+ .+....... .. . .......++| +.++..
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~-~~-~--~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTK-LV-G--IEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSE-EE-E--EEEEGGGCCCCCSHHHHHHH
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCc-cc-c--ccccccccCCCCcceeeeee
Confidence 88888888999999988764332221110 00000 000000000 00 0 0000123344 333332
Q ss_pred ---ecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CC-eEEEEeCC------CeEEEEEccccccccccccceeee
Q 038568 159 ---SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSAD------GRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 159 ---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
..+..|.+||+.+++..... .+...+..+.|+| ++ +|+..+.+ ..|.+||+. . .. .
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------~----~~-~ 228 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED------G----SN-V 228 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT------S----CC-C
T ss_pred ccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC------C----Cc-e
Confidence 35668999999887654433 4567789999999 66 45555443 357788875 1 11 1
Q ss_pred eEeecc--ccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeec---CceEEEec-
Q 038568 228 TTLVKH--RSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINV---GDLLASGS- 296 (357)
Q Consensus 228 ~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~- 296 (357)
..+..+ ...+..++|+|+|++|+.++.+ +.|++||+.+++... +....++ . ..|+ +++++.++
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~----~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 229 RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPPC----S-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCSE----E-EEEECSSSSEEEEEEC
T ss_pred eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCCC----C-CCccCCCCceEEEecC
Confidence 112222 2357889999999987776554 459999998775432 2222221 1 4454 44666543
Q ss_pred ---------------CCCeEEEeeCCCCcceeeeeeecCCcC-----------ceEEEEEeeCCCCCCCCeEEEEEcC-C
Q 038568 297 ---------------ADRTVRIWQRGKENCYRCMAFLEGHEK-----------PVKSLVAISSSSSASNGIVSIGSGS-L 349 (357)
Q Consensus 297 ---------------~dg~i~vw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~l~s~~-~ 349 (357)
.++.|++||+.+++. ..+..+.. .+..+.|+|+++ .|+.++ .
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~s~~ 371 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDD-------GVLFTSDF 371 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSS-------EEEEEECT
T ss_pred CcceeeccccccccCCCCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccCCC-------eEEEEecC
Confidence 347899999987642 22333333 256788999987 555444 4
Q ss_pred CCeEEec
Q 038568 350 NGEIKVW 356 (357)
Q Consensus 350 dg~v~~w 356 (357)
++...+|
T Consensus 372 ~~~~~l~ 378 (396)
T 3c5m_A 372 EGVPAIY 378 (396)
T ss_dssp TSSCEEE
T ss_pred CCCceEE
Confidence 5665555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-15 Score=125.20 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=162.3
Q ss_pred ccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-e-EEeecCCeEEEEecCCcc
Q 038568 29 HMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-I-FTAHQDCKIRVWKITASR 103 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l-~~~~~d~~i~vwd~~~~~ 103 (357)
...|.+++|+ +..++..+.+ .++.|.. +....+.. +...+.+++|++++ | +++..++.|.+||..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITA----EPWLEISK---KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC----EEEEEEES---SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred ccccceeeecCCccceeEEeecccCccccc----ceeEEEec---cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 3457888888 5566666777 9999943 34555555 66778999999987 4 467788999999998765
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC----CeEEEEEcCcchhhhh
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD----RSFKIWNASNYKCLES 177 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d----g~i~iwd~~~~~~~~~ 177 (357)
...... .+...+.++++++ +++++...+ +.|.+||..+++....
T Consensus 78 ~~~~~~------------------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 78 IKRPFV------------------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp EEEEEE------------------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred EEEEee------------------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 432221 2345789999998 445555445 5899999887664322
Q ss_pred cc-ccccccEEEEEEecCCeEEEEeCC-------CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 178 VN-KAHEDAVNAVVVSDNGVVYTGSAD-------GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 178 ~~-~~~~~~v~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
+. ......+..++++|++.++.+... +.|..+|.. . .+. ..+......+..++|+|+++.|
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~------~----~~~-~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD------F----RTV-TPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT------S----CCE-EEEEEEESSEEEEEECTTSSEE
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC------C----CEE-EEeecCCCcccceEECCCCCEE
Confidence 21 124457899999999975555442 455555543 1 111 1122223457889999999866
Q ss_pred EE-EecCCeEEEEeccc-CCceeee-----eeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecC
Q 038568 250 FS-GGCDRWIVVWERER-DHRMVFA-----EALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEG 320 (357)
Q Consensus 250 ~~-~~~dg~i~vwd~~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 320 (357)
+. .+.++.|.+||+.+ +...... ..+.++ ..+..++++++ ++++...++.|.+||.. + +.+..+..
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~~~ 271 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQILI 271 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEEEC
T ss_pred EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEEEc
Confidence 54 45678999999964 3222111 112222 34566777655 66666667899999984 4 22333333
Q ss_pred Cc------CceEEEEEeeCCC
Q 038568 321 HE------KPVKSLVAISSSS 335 (357)
Q Consensus 321 h~------~~v~~~~~~~~~~ 335 (357)
+. ..+.+++|+|++.
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSC
T ss_pred CCCccccccCcceEEECCCCC
Confidence 32 2689999998875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-15 Score=123.09 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=164.7
Q ss_pred ccceeEEEEe--cceEEEeeCC-------------------------ceEEEeccCCccccceeccccCCCCceEEEEEe
Q 038568 29 HMIISCLAVH--NSLLYAASLN-------------------------EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
-+.+.+++++ |+++++...+ .|.+||. .+++.+..+.. .+-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~--~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGK--NLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECT--TTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCC--CccCCceEEEEC
Confidence 3579999999 8888777665 3899998 77777665542 255678999999
Q ss_pred cCc--eEEeecCCeEEEEecCCcc-ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASR-QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLM 155 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 155 (357)
|++ +++...++.|++|+..... ....+...... ..-..+......++++| .++
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---------------------g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---------------------GSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---------------------CCSTTCCSSEEEEEECTTTCCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---------------------CCCccccCCCcEEEEeCCCCeEE
Confidence 987 6666778999999986542 22222110000 00013445688999997 455
Q ss_pred EEEe-cCCeEEEEEcCcchhhhhccc---------cccccEEEEEEecC-Ce-EEEEeCCCeEEEEEccccccccccccc
Q 038568 156 YSVS-WDRSFKIWNASNYKCLESVNK---------AHEDAVNAVVVSDN-GV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 156 ~~~~-~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~-~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
++.+ .++.|++|| .+++.+..+.. .+-.....++++|+ +. +++...++.|++||.. .
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----------~ 227 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----------T 227 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----------T
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----------C
Confidence 5554 589999999 45666655521 12234789999998 65 6666778999999986 2
Q ss_pred eeeeeEe--eccccceeEEEEec------CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 224 HMLVTTL--VKHRSTVNALALNG------DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 224 ~~~~~~~--~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
.+.+..+ ..+...+..++|+| +++..++...+..|++||..+++....+....++......++++++ +++
T Consensus 228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence 3334444 24556788899998 3333333344568999999988755443322456666778888776 777
Q ss_pred EecCCCeEEEeeCCC
Q 038568 294 SGSADRTVRIWQRGK 308 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~ 308 (357)
+...++.|++|++..
T Consensus 308 ad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 308 GDAHTNTVWKFTLTE 322 (329)
T ss_dssp EESSSCCEEEEEEEE
T ss_pred EECCCCEEEEEeCCc
Confidence 888899999999864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-16 Score=141.12 Aligned_cols=254 Identities=12% Similarity=0.061 Sum_probs=156.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCC-----ceEEEEEecCc--eEEeecC------
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG-----SVKSITFHITK--IFTAHQD------ 91 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~--l~~~~~d------ 91 (357)
......+++|+ |++++++ | .|++||+ .+++....+.+ |.. ....++|+||+ |+.++.+
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNA-EYGNSSVFLEN---STFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEET-TTCCEEEEECT---TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEEC-CCCceEEEEec---hhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 33446788999 7788876 7 9999999 88887766665 432 23458899998 7777765
Q ss_pred ---CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 92 ---CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 92 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.+.+||+.+++... + ..+...+...+|+| +.|+.+ .++.|++
T Consensus 89 ~~~~~~~~~d~~~~~~~~-l------------------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~ 136 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLIT-E------------------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYV 136 (740)
T ss_dssp CEEEEEEEEETTTTEECC-S------------------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEE
T ss_pred ccceEEEEEECCCCcEEE-c------------------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEE
Confidence 567799999876432 1 15567899999999 677776 5789999
Q ss_pred EEcCcchhhhhccccccccE-----------------EEEEEecCCe-EEEEeCCC------------------------
Q 038568 167 WNASNYKCLESVNKAHEDAV-----------------NAVVVSDNGV-VYTGSADG------------------------ 204 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~-l~~~~~d~------------------------ 204 (357)
||+.+++.......++...+ ..+.|+|||. |+.++.|.
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99988765432212222222 3589999994 76664332
Q ss_pred ------------eEEEEEccccccccccccceeeeeEee------ccccceeEEEEecCCCEEEEEec----CCeEEEEe
Q 038568 205 ------------RIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALALNGDGSLLFSGGC----DRWIVVWE 262 (357)
Q Consensus 205 ------------~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd 262 (357)
.|++||+..... +.. .. ...+. ++...+..++|+|||+.++.... +..|++||
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~---~~~-~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSS---VTN-AT-SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCS---SSC-CC-EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred cCCCCcCcCCeeEEEEEECCCCCC---CCc-ce-EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence 355555541000 100 01 11222 36777899999999996665533 34799999
Q ss_pred cccCC----ceeeeeec--cCCccceE-----EEeecCc--eEE-Eec-CC--CeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 263 RERDH----RMVFAEAL--WGHTGALL-----CLINVGD--LLA-SGS-AD--RTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 263 ~~~~~----~~~~~~~~--~~~~~~v~-----~~~~~~~--~l~-~~~-~d--g~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
+.+++ .... ..+ .+|...+. ...|+++ .|+ ..+ .+ ..|++||+..++ ...+......|
T Consensus 292 ~~tg~~~~~~~~~-~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~~lT~g~~~v 366 (740)
T 4a5s_A 292 YDESSGRWNCLVA-RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWEV 366 (740)
T ss_dssp EETTTTEEEECGG-GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CEESCCSSSCE
T ss_pred CCCCccccceeEE-EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eEecccCCEEE
Confidence 99876 1111 111 23443332 4556655 444 444 33 468888887653 22233334455
Q ss_pred EEEE
Q 038568 326 KSLV 329 (357)
Q Consensus 326 ~~~~ 329 (357)
..+.
T Consensus 367 ~~~~ 370 (740)
T 4a5s_A 367 IGIE 370 (740)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-15 Score=123.07 Aligned_cols=268 Identities=9% Similarity=0.037 Sum_probs=171.4
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccC---CCCc
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLS---SSGS 74 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~---~~~~ 74 (357)
..+++.+..+.. +..+ .++|+ |++|+++. .+ .|.+||. .+.+.+..+..... +...
T Consensus 38 ~~t~~~~~~i~~-----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 38 YTNGKFLGMVPT-----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA-DKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp TTTCCEEEEEEC-----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET-TTCCEEEEEEECTTBCCBCCC
T ss_pred CCCCeEEEEecC-----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC-cCCcEEEEEEcCccccccCCC
Confidence 345566666664 5555 88999 88888886 25 8999999 88888877764110 1245
Q ss_pred eEEEEEecCc--eEEeec--CCeEEEEecCCccceee-eeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 75 VKSITFHITK--IFTAHQ--DCKIRVWKITASRQHQL-VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 75 v~~l~~~~~~--l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...++++|++ |+++.. +++|.+||+.+++.... +.. .. ...+.
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-------------------------------~~-~~~v~ 157 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-------------------------------AG-CWSVI 157 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-------------------------------TT-EEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-------------------------------CC-cceeE
Confidence 6789999987 666653 68999999998865433 211 11 11234
Q ss_pred Eec---CeEEEEecCCeEEEEEcCc-chhh------hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc
Q 038568 150 VKQ---GLMYSVSWDRSFKIWNASN-YKCL------ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 150 ~~~---~~l~~~~~dg~i~iwd~~~-~~~~------~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
+.| ..+++.+.||.+.+|+... ++.. ..+ .....++ .+...+++ .++..+.++.+.++|+...
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~---- 231 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF-SVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD---- 231 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS-CTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS----
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE-cCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC----
Confidence 445 5678888999999998864 4333 112 1112221 22335555 4666678899999998611
Q ss_pred ccccceeeeeEeec------c----ccceeEEEEecCCCEEEEEec-----------CCeEEEEecccCCceeeeeeccC
Q 038568 219 ERKSRHMLVTTLVK------H----RSTVNALALNGDGSLLFSGGC-----------DRWIVVWERERDHRMVFAEALWG 277 (357)
Q Consensus 219 ~~~~~~~~~~~~~~------~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~ 277 (357)
. ......+.. + ......++|+|+++.++++.. .+.|.+||+.+.+. +..+..
T Consensus 232 --~--~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i~~ 304 (361)
T 2oiz_A 232 --E--VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARIPG 304 (361)
T ss_dssp --S--CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEEEC
T ss_pred --C--ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEEec
Confidence 1 111111110 0 011223789999888777653 35899999998874 334444
Q ss_pred CccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 278 HTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 278 ~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+. ...++++++ +|++++. +.|.+||..+++ .+.+..+..+......++++|++.
T Consensus 305 ~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 305 RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence 44 667777665 7777776 999999999861 245566666677788999999875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-15 Score=120.62 Aligned_cols=255 Identities=11% Similarity=0.041 Sum_probs=168.6
Q ss_pred CC-ceEEEeccCCccccceecc---ccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeee
Q 038568 47 LN-EINVFDLISDYSHVDTFSN---DLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 47 ~d-~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 121 (357)
.+ .|.++|. ++++....+.. ..........+.+..+. +++...++.|.+||..+++....+..
T Consensus 15 ~~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----------- 82 (328)
T 3dsm_A 15 SNATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG----------- 82 (328)
T ss_dssp CCBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----------
T ss_pred CCceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-----------
Confidence 37 9999999 88776655421 01133457888888777 55566679999999998876555421
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec-CeEEEEe-cCCeEEEEEcCcchhhhhccccc----cccEEEEEEecCC
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVS-WDRSFKIWNASNYKCLESVNKAH----EDAVNAVVVSDNG 195 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~ 195 (357)
......+++++ ..++.+. .++.|.+||..+++....+..+. ......+++ .++
T Consensus 83 --------------------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~ 141 (328)
T 3dsm_A 83 --------------------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK 141 (328)
T ss_dssp --------------------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT
T ss_pred --------------------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC
Confidence 24567888866 5566655 78999999999988776662221 014556677 556
Q ss_pred eEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC----------CeEEEEec
Q 038568 196 VVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD----------RWIVVWER 263 (357)
Q Consensus 196 ~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~ 263 (357)
+++++. .++.|.++|+. ..+....+.. ......++++|+|++++++..+ +.|.++|.
T Consensus 142 ~lyv~~~~~~~~v~viD~~----------t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTE----------TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp EEEEEECTTCCEEEEEETT----------TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred EEEEEcCCCCCEEEEEECC----------CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 655554 48999999987 2333333332 2345788999999877776554 78999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee-CCCCCCCC
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS-SSSSASNG 340 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~ 340 (357)
.+.+....+... .......++++++ .|+++.. .|.+||..+++... ...+........+++++| ++.
T Consensus 211 ~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~----- 280 (328)
T 3dsm_A 211 ETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGE----- 280 (328)
T ss_dssp TTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCC-----
T ss_pred CCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCe-----
Confidence 877643222211 1224677777754 6666554 89999998864211 111222245688999999 444
Q ss_pred eEEEEEc----CCCCeEEecC
Q 038568 341 IVSIGSG----SLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~----~~dg~v~~wd 357 (357)
++++. ..++.|.+||
T Consensus 281 --lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 281 --VYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --EEEEECTTSSSEEEEEEEC
T ss_pred --EEEEcccccccCCEEEEEC
Confidence 66666 6788999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-14 Score=120.23 Aligned_cols=250 Identities=9% Similarity=0.068 Sum_probs=157.9
Q ss_pred cceeEEEEecceEEEee---------CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---C--
Q 038568 30 MIISCLAVHNSLLYAAS---------LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---C-- 92 (357)
Q Consensus 30 ~~i~~~~~s~~~l~t~~---------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~-- 92 (357)
..+...+++|+.++... .+ .|.+||+ ++++.. .+ ..+..++|+||+ |+.++.+ +
T Consensus 15 ~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~-~~~~~~-~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENL-KNNARR-FI-------ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEET-TTCCEE-EE-------ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceECCcEEEEEEeecCcccCCccceEEEEeC-CCCceE-Ec-------ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 34566666877776542 36 8999999 765532 22 357889999997 6666543 3
Q ss_pred eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC---------
Q 038568 93 KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD--------- 161 (357)
Q Consensus 93 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------- 161 (357)
.|.+|++.+++..... .+.. +..+.|+| +.|+.++.+
T Consensus 86 ~l~~~~~~~g~~~~l~-------------------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 86 EIWVADLETLSSKKIL-------------------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp EEEEEETTTTEEEEEE-------------------------------EESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred eEEEEECCCCceEEEE-------------------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 3777788766533222 1223 88899998 667666532
Q ss_pred ------------------CeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCC-------eEEEEEcccccc
Q 038568 162 ------------------RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADG-------RIRVWERSVVDH 216 (357)
Q Consensus 162 ------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~ 216 (357)
..|.+||+.+++.+..+ .. . .+..+.|+|++.++++..++ ...+|.+..
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~--- 207 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-EK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWED--- 207 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEE-EE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEET---
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeee-cC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCC---
Confidence 57999999887764555 23 3 78899999999444444431 445555430
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC--------CeEEEEecccCCceeeeeeccCCccceEE-Eee
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD--------RWIVVWERERDHRMVFAEALWGHTGALLC-LIN 287 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~ 287 (357)
... ..+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++ .......+...+.. +.|
T Consensus 208 -------~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~ 271 (347)
T 2gop_A 208 -------GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIK 271 (347)
T ss_dssp -------TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEE
T ss_pred -------Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEE
Confidence 111 122222 344444 9999988877754 3688888 443 22233445666765 777
Q ss_pred cCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE-Eec
Q 038568 288 VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI-KVW 356 (357)
Q Consensus 288 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v-~~w 356 (357)
+..++++++.++.++|| +.++ +. ..+..+...|.+++|+| . ++++++.++.. ++|
T Consensus 272 sdg~~~~~~~~~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~-------~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 272 DGKVYFTLFEEGSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--I-------VVYLKETATRLRELF 327 (347)
T ss_dssp TTEEEEEEEETTEEEEE-EESS---SE-EEEECSSSEEEEEEESS--S-------EEEEEECSSSCCEEE
T ss_pred cCcEEEEEecCCcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--c-------EEEEEcCCCChHHhe
Confidence 62288888999999999 8754 22 22334577899999999 4 67776666543 554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-14 Score=116.93 Aligned_cols=236 Identities=10% Similarity=0.053 Sum_probs=152.0
Q ss_pred cccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
..+..+.. +.....+++|+|++ ++++..++.|..|+..++ ...+.
T Consensus 18 ~~~~~l~~---~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--------------------------- 65 (296)
T 3e5z_A 18 AEARRLAD---GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--------------------------- 65 (296)
T ss_dssp CCCEEEEC---CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---------------------------
T ss_pred CcEEEEec---CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---------------------------
Confidence 33444444 66678899999975 677788999999999875 22222
Q ss_pred ccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc---ccccccEEEEEEecCCeEEE-----Ee-----
Q 038568 137 LWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN---KAHEDAVNAVVVSDNGVVYT-----GS----- 201 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~l~~-----~~----- 201 (357)
.+...+.++++++ .++++...++.|.+||..+++...... ......+..++++|+|.+.. |.
T Consensus 66 ---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 66 ---HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142 (296)
T ss_dssp ---SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred ---CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence 3446688999998 555555556899999997776433221 11123466899999996544 32
Q ss_pred --------CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc-cCCceeee
Q 038568 202 --------ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHRMVFA 272 (357)
Q Consensus 202 --------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~ 272 (357)
..+.|..++.. . ....+..+......++|+|+++.+++.+.++.|++|++. ++......
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-----------g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~ 210 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPD-----------G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG 210 (296)
T ss_dssp SSCCCCCSSSCEEEEECTT-----------S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE
T ss_pred cccccccCCCcEEEEECCC-----------C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC
Confidence 12355555432 1 122234455667899999999988777788999999997 33320111
Q ss_pred eeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCCCCCCCeEEEEEcCCC
Q 038568 273 EALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~l~s~~~d 350 (357)
..+..+...+..++++++ .|.++. ++.|.+|+.. + +.+..+..+.. +++++|. |+++ .|+.++.+
T Consensus 211 ~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~~~~~~~-~~~~~f~~~d~~-------~L~v~t~~ 277 (296)
T 3e5z_A 211 VHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGRVLTPQT-TSNLCFGGPEGR-------TLYMTVST 277 (296)
T ss_dssp EEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEEEECSSC-CCEEEEESTTSC-------EEEEEETT
T ss_pred eEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEEEECCCC-ceeEEEECCCCC-------EEEEEcCC
Confidence 122223444555666655 333333 7889999986 4 44556666666 8999994 7776 77777777
Q ss_pred CeEEe
Q 038568 351 GEIKV 355 (357)
Q Consensus 351 g~v~~ 355 (357)
+..++
T Consensus 278 ~l~~~ 282 (296)
T 3e5z_A 278 EFWSI 282 (296)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=127.34 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=155.5
Q ss_pred EEeccCCccccceeccccCCCCceEE-----EEEecCc--eEEeec-CC--eEEEEecCCccceeeeeecCccccceeee
Q 038568 52 VFDLISDYSHVDTFSNDLSSSGSVKS-----ITFHITK--IFTAHQ-DC--KIRVWKITASRQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 52 iw~~~~~~~~~~~~~~~~~~~~~v~~-----l~~~~~~--l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 121 (357)
.++. .++..+..+.. +...... .+|+||+ |+.++. ++ .|.+||+.+++......
T Consensus 14 ~~~~-~~g~~~~~lt~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~------------ 77 (388)
T 3pe7_A 14 YQDA-STGAQVTRLTP---PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE------------ 77 (388)
T ss_dssp EECT-TTCCEEEECSC---TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC------------
T ss_pred EecC-CCCcceEEecC---CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee------------
Confidence 3455 66777777775 6666665 8899997 777766 66 48888888775433221
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEE--EecCCeE
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV--VSDNGVV 197 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l 197 (357)
.+...+....|+| +.|+.++.++.|++||+.+++..... ..+...+.... ++|++.+
T Consensus 78 ------------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~ 138 (388)
T 3pe7_A 78 ------------------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTK 138 (388)
T ss_dssp ------------------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSE
T ss_pred ------------------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCe
Confidence 3444444567999 78999999999999999988765544 33444443333 4788853
Q ss_pred EEE-----------------------eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEe
Q 038568 198 YTG-----------------------SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGG 253 (357)
Q Consensus 198 ~~~-----------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 253 (357)
+.+ ..+..|.+||+. . .+ ...+..+...+..++|+| +|+.|+...
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~------~----g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK------T----GE-STVILQENQWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT------T----CC-EEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECC------C----Cc-eEEeecCCccccccEECCCCCCEEEEEE
Confidence 332 234678999987 2 22 223334566789999999 999888776
Q ss_pred cC------CeEEEEecccCCceeeeeeccCCc--cceEEEeecCc--eEEEec-CC----CeEEEeeCCCCcceeeeeee
Q 038568 254 CD------RWIVVWERERDHRMVFAEALWGHT--GALLCLINVGD--LLASGS-AD----RTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 254 ~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~l~~~~-~d----g~i~vw~~~~~~~~~~~~~~ 318 (357)
.+ ..|.++|....... .+..+. ..+....|+|+ .|+..+ .+ +.|++||+.+++. +.+..+
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~ 282 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSM 282 (388)
T ss_dssp CSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEE
T ss_pred ecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcC
Confidence 53 37888887755422 222233 34667778776 454433 22 2499999998743 334344
Q ss_pred cCCcCc---eEEEEEeeCCCCCCCCeEEEEEc---------CCCCeEEecC
Q 038568 319 EGHEKP---VKSLVAISSSSSASNGIVSIGSG---------SLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~~---v~~~~~~~~~~~~~~~~~~l~s~---------~~dg~v~~wd 357 (357)
.++... ...+.|+|+++ .|+.. ..+..|.+||
T Consensus 283 ~~~~~~~~~~~~~~~spdg~-------~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 283 PACSHLMSNYDGSLMVGDGS-------DAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp CCEEEEEECTTSSEEEEEEC-------CC------------CCCCEEEEEE
T ss_pred CCceeeeecCCCCeEccCCC-------cceeEeeeccccccCCCCEEEEEe
Confidence 432111 12237999987 55532 4566888875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.4e-14 Score=114.36 Aligned_cols=235 Identities=10% Similarity=0.055 Sum_probs=158.3
Q ss_pred cceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee-cCCeEEEEecCCccce
Q 038568 30 MIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH-QDCKIRVWKITASRQH 105 (357)
Q Consensus 30 ~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~-~d~~i~vwd~~~~~~~ 105 (357)
.....+++. ++++++...+ .|.+||. .+++.+.++. .......+++++++ ++.+. .++.|.+||..+.+..
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~-~t~~~~~~i~----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDI-NTFKEVGRIT----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEET-TTCCEEEEEE----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEEC-cccEEEEEcC----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 456778888 5555555556 9999999 8888888885 45678899998776 55555 7899999999987655
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe--cCCeEEEEEcCcchhhhhcccccc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS--WDRSFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 183 (357)
..+..... .+.......+++..+.++.+. .++.|.++|+.+++.+..+. ..
T Consensus 119 ~~i~~g~~-------------------------~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~g 171 (328)
T 3dsm_A 119 GYIECPDM-------------------------DMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT--IG 171 (328)
T ss_dssp EEEECTTC-------------------------CTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE--CS
T ss_pred EEEEcCCc-------------------------cccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--cC
Confidence 44432110 011113345555555555555 48899999999988777762 23
Q ss_pred ccEEEEEEecCCeEEEEeC-C----------CeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEE
Q 038568 184 DAVNAVVVSDNGVVYTGSA-D----------GRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFS 251 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~-d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 251 (357)
.....+.++|++.++.++. + +.|.++|.. ..+....+... ......++++|+++.|++
T Consensus 172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~----------t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE----------TFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT----------TTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC----------CCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 3456889999997555543 3 689999987 22333333321 236789999999998888
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEe----cCCCeEEEeeCCCCc
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASG----SADRTVRIWQRGKEN 310 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~----~~dg~i~vw~~~~~~ 310 (357)
+.. .|.+||..+++... .............++++++ ++++. ..++.|.+||.. ++
T Consensus 242 ~~~--~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ESS--SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred Ecc--EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 765 89999998776321 1111112345677778762 55555 578999999998 63
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=134.83 Aligned_cols=244 Identities=9% Similarity=-0.017 Sum_probs=153.0
Q ss_pred cceeccccCCCCceEEEEEecCc--eEEe--ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 62 VDTFSNDLSSSGSVKSITFHITK--IFTA--HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 62 ~~~~~~~~~~~~~v~~l~~~~~~--l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
...+.+ |...+..++|+++. ++.. +.++...||....+.....+.
T Consensus 16 ~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~---------------------------- 64 (662)
T 3azo_A 16 AALVAS---RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL---------------------------- 64 (662)
T ss_dssp HHHHHH---TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS----------------------------
T ss_pred HHHHhh---cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC----------------------------
Confidence 344555 88999999999988 4444 457889999964433222221
Q ss_pred cccccccEE---------EEEEe--c--Ce-EEEEec-CCeEEEEEcC--c-chhhhhcccc-----ccccEEEEEEecC
Q 038568 138 WLEHWDAVS---------DLVVK--Q--GL-MYSVSW-DRSFKIWNAS--N-YKCLESVNKA-----HEDAVNAVVVSDN 194 (357)
Q Consensus 138 ~~~~~~~v~---------~~~~~--~--~~-l~~~~~-dg~i~iwd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~ 194 (357)
.+...+. ...|+ | +. |+.++. +..|.++++. . ++ ...+ .. +...+..++|+||
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 65 --PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp --CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEETT
T ss_pred --CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECCC
Confidence 2222222 34444 6 55 554443 5667777765 2 33 3333 22 5667889999999
Q ss_pred C-eEEEEeCC----------CeEEEEEccccccccccccceeeeeEee-ccccceeEEEEecCCCEEEEEecC-------
Q 038568 195 G-VVYTGSAD----------GRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTVNALALNGDGSLLFSGGCD------- 255 (357)
Q Consensus 195 ~-~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------- 255 (357)
| .|++++.+ ..|++||+..... ..... ...+. .+...+..++|+|||++|+.++.+
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA----ADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT----TCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCcc----ccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 9 57777766 5899999872000 00011 12333 455678889999999999987755
Q ss_pred -CeEEEEecc-cCCceeeeeeccCCccceEEEeecCc--eEEEecCCC--eEEEeeCCCCcceeeeeeecCCcCc-----
Q 038568 256 -RWIVVWERE-RDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR--TVRIWQRGKENCYRCMAFLEGHEKP----- 324 (357)
Q Consensus 256 -g~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~----- 324 (357)
..|++||+. ++..........++...+..+.|+++ +++++..++ .|.+||+.+++ .......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLW 292 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCC
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc---eeecccccccccCccc
Confidence 379999998 45211122223345677888888766 777888888 56666665552 22222222222
Q ss_pred ---eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 325 ---VKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 325 ---v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+..++|+|++. ++++++. +.++||
T Consensus 293 ~~~~~~~~~~~~~~-------~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 293 TPGMRWFAPLANGL-------IAVVHGK-GAAVLG 319 (662)
T ss_dssp STTCCSEEECTTSC-------EEEEEBS-SSCEEE
T ss_pred cccCceEeEeCCCE-------EEEEEEc-CccEEE
Confidence 56788888887 8888888 888888
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-13 Score=118.78 Aligned_cols=266 Identities=12% Similarity=0.167 Sum_probs=175.9
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC--CccceeeeeecCc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT--ASRQHQLVSTLPT 113 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~--~~~~~~~~~~~~~ 113 (357)
+.++++...+ .|.++|. .+++.+..+. ....+..+.|+|++ +++++.|+.|.+||+. +.+....+..
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--- 238 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLD----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--- 238 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEE----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC---
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEe----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec---
Confidence 3445555566 9999999 8888888887 45567799999997 7888899999999995 5544433321
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEe----c--CeEEEEe-cCCeEEEEEcCcchhhhhcccc-----
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK----Q--GLMYSVS-WDRSFKIWNASNYKCLESVNKA----- 181 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----- 181 (357)
......++|+ | +++++++ .++.+.++|..+.+.+..+...
T Consensus 239 ----------------------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~ 290 (567)
T 1qks_A 239 ----------------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD 290 (567)
T ss_dssp ----------------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT
T ss_pred ----------------------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccc
Confidence 1235688888 5 5666555 4699999999998887776311
Q ss_pred ----c-cccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-
Q 038568 182 ----H-EDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG- 253 (357)
Q Consensus 182 ----~-~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 253 (357)
| ...+..+..++++ .++....+|.|.++|.... . ...+..+ ........+.|+|++++++++.
T Consensus 291 ~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~------~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 291 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL------N--NLKTTEI-SAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS------S--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEG
T ss_pred cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC------c--cceeeee-eccccccCceECCCCCEEEEEeC
Confidence 1 2257788888876 3666677899999998621 1 1112222 2334566889999999887765
Q ss_pred cCCeEEEEecccCCceeeeee--ccCCccceEEEeecC--c-eEEEec-CCCeEEEeeCCCCc----ceeeeeeecCCcC
Q 038568 254 CDRWIVVWERERDHRMVFAEA--LWGHTGALLCLINVG--D-LLASGS-ADRTVRIWQRGKEN----CYRCMAFLEGHEK 323 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~--~-~l~~~~-~dg~i~vw~~~~~~----~~~~~~~~~~h~~ 323 (357)
.++.|.++|+.+++....+.. ...|.+.-..+ +++ . ..+++. .++.|.++|..+.+ .++.+..+.....
T Consensus 362 ~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~ 440 (567)
T 1qks_A 362 ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 440 (567)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence 578899999998875444332 12343322223 333 3 445543 56899999998732 1456666665444
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCC-------CCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSL-------NGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~-------dg~v~~wd 357 (357)
.-..+..+|+++ +|..... .+.|.++|
T Consensus 441 g~~~i~~~p~~~-------~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 441 GSLFIKTHPNSQ-------YLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp CCCCEECCTTCS-------EEEEECTTCSSHHHHTCEEEEE
T ss_pred CCEEEEeCCCCC-------eEEEecCCCCCcccCceEEEEE
Confidence 334577899987 5555431 34676664
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-12 Score=104.47 Aligned_cols=268 Identities=8% Similarity=-0.034 Sum_probs=170.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEe-ecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTA-HQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~-~~d~~i~vwd~~~~ 102 (357)
+...+.+++++ |+++++...+ .|.+||. . ++ ...+... .....+.++++.+++ +..+ ..++.|..|+.. +
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~-~-~~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINL-D-GK-ITEYPLP-TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CC-EEEEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcC-C-CC-eEEecCC-cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 55789999998 6666655556 9999998 5 33 3333210 145679999999887 4444 447889999976 3
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+. ..+. .+ .....+..+++.+ .++++...++.|..||. +++.......
T Consensus 88 ~~-~~~~-~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 88 II-KEYT-LP---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp CE-EEEE-CS---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred cE-EEEe-CC---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence 21 1111 10 2234678899988 44455556789999998 4443322112
Q ss_pred cccccEEEEEEecCCeEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.....+..+++.+++.+.. ...++.|..||.. . ... ..........+..++++++++++++...++.|.
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--------~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQNNAIGRITES-G--------DIT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C--------CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-C--------cEE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 3445788999999986544 4456899999863 1 111 111223345678999999998777766788999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+||. ++... .. ....+...+.++.++++ ++++...++.|..||.. ++ .. ...+..+...+.++++ +++.
T Consensus 208 ~~~~-~g~~~-~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~-~~~~~~~~~~~~~i~~-~~g~-- 278 (299)
T 2z2n_A 208 RITT-SGEIT-EF-KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IE-EYPIQIKSAEPHGICF-DGET-- 278 (299)
T ss_dssp EECT-TCCEE-EE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EE-EEECSSSSCCEEEEEE-CSSC--
T ss_pred EECC-CCcEE-EE-ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eE-EEeCCCCCCccceEEe-cCCC--
Confidence 9999 55422 21 22334456778888765 45555567899999983 31 22 1223345567899999 8887
Q ss_pred CCCeEEEEEcCCCCeEE
Q 038568 338 SNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~ 354 (357)
+.++.+.++.++
T Consensus 279 -----l~v~~~~~~l~~ 290 (299)
T 2z2n_A 279 -----IWFAMECDKIGK 290 (299)
T ss_dssp -----EEEEETTTEEEE
T ss_pred -----EEEEecCCcEEE
Confidence 666655454444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-14 Score=127.88 Aligned_cols=268 Identities=10% Similarity=0.042 Sum_probs=150.3
Q ss_pred eEEEEe--cceEEEeeCC-ce---------EEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 33 SCLAVH--NSLLYAASLN-EI---------NVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d-~i---------~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
..++|| |++|+.++.+ .+ .+||+ .+++.. .+.. +...+...+|+||+ |+.+ .|+.|.+|+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~-~~~~~~-~l~~---~~~~~~~~~~SPdG~~la~~-~~~~i~~~~ 138 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL-NKRQLI-TEER---IPNNTQWVTWSPVGHKLAYV-WNNDIYVKI 138 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET-TTTEEC-CSSC---CCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEEC-CCCcEE-Eccc---CCCcceeeEECCCCCEEEEE-ECCeEEEEE
Confidence 447778 8999998876 54 59999 776654 3554 78899999999998 6665 578999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc---------ccEEEEEEec--CeEEEEec-------
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW---------DAVSDLVVKQ--GLMYSVSW------- 160 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~--~~l~~~~~------- 160 (357)
+.+++..+.... ...... +.++. .....+.|+| +.|+.++.
T Consensus 139 ~~~~~~~~lt~~--g~~~~~-------------------~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 139 EPNLPSYRITWT--GKEDII-------------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp STTSCCEECCSC--CBTTTE-------------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred CCCCceEEEcCC--CCccce-------------------ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 988764322111 000000 00111 1112244444 33333321
Q ss_pred -----------------------------CCeEEEEEcCc---chh--hhhccc-----cccccEEEEEEecCCe-EEEE
Q 038568 161 -----------------------------DRSFKIWNASN---YKC--LESVNK-----AHEDAVNAVVVSDNGV-VYTG 200 (357)
Q Consensus 161 -----------------------------dg~i~iwd~~~---~~~--~~~~~~-----~~~~~v~~~~~~~~~~-l~~~ 200 (357)
...|.+||+.+ ++. ...+.. .+...+..++|+||+. ++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 12588899988 632 222211 3677899999999996 4433
Q ss_pred e----CCCeEEEEEccccccccccccceeeeeEe--ecccccee-----EEEEecCCCEEE-EEec-C--CeEEEEeccc
Q 038568 201 S----ADGRIRVWERSVVDHNKERKSRHMLVTTL--VKHRSTVN-----ALALNGDGSLLF-SGGC-D--RWIVVWERER 265 (357)
Q Consensus 201 ~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~~-d--g~i~vwd~~~ 265 (357)
. .+..|.+||+.+.+... .......+ ..+...+. ..+|+|||+.|+ ..+. + ..|++||+.+
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~----~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRW----NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEE----EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred eCCCCCEEEEEEEECCCCcccc----ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 2 23479999987321000 00001111 33554444 788999999776 5553 3 4688888886
Q ss_pred CCceeeeeeccCCccceEE-EeecCc-eEEEecC----CCeEEEe--eCCCCcceeeeee-ecCCcCceEEEEEeeCCC
Q 038568 266 DHRMVFAEALWGHTGALLC-LINVGD-LLASGSA----DRTVRIW--QRGKENCYRCMAF-LEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~-~~~~~~-~l~~~~~----dg~i~vw--~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~ 335 (357)
+... .+......+.. +.++++ .++++.. .+...|| ++..++..+++.. +.+.........|+|+++
T Consensus 354 ~~~~----~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 354 KDCT----FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp SSCE----ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred CceE----ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence 6532 22223334433 346666 3344443 2344454 4443311111110 112345688999999987
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-13 Score=110.90 Aligned_cols=230 Identities=9% Similarity=0.066 Sum_probs=150.3
Q ss_pred ceEEEEEecCc-eEE-e-ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 74 SVKSITFHITK-IFT-A-HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 74 ~v~~l~~~~~~-l~~-~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
...++++.+++ ++. + ..++.|.+|+..+..... ... .+...+.++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~-----------------------------~~~~~p~~i~~ 74 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-----------------------------NGLYQPQGLAV 74 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCC-----------------------------CSCCSCCCEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Eee-----------------------------CCcCCcceeEE
Confidence 77899999987 444 4 677899999876543211 100 22245677888
Q ss_pred ec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 151 KQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 151 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.+ ..++.+..++.|.+||...... ..+.......+..+++++++. +++...++.|.+|+... .....
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~----------~~~~~ 143 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS----------KTQTV 143 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC----------CSCEE
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC----------ceeEe
Confidence 88 4455555588999999875443 223123335788999999986 44445678999997541 11111
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
........+.+++++++++++++...++.|.+||........ ....+......++++++ ++++...++.|.+|+.
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 111223457889999999977777778899999988654321 11223355677777765 5566666889999998
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.... .......+...+.++++++++. ++++...++.|++++
T Consensus 221 ~~~~---~~~~~~~~~~~p~~i~~~~~g~-------l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 221 GSTT---STVLPFTGLNTPLAVAVDSDRT-------VYVADRGNDRVVKLT 261 (270)
T ss_dssp TCSC---CEECCCCSCSCEEEEEECTTCC-------EEEEEGGGTEEEEEC
T ss_pred CCCc---ceeeccCCCCCceeEEECCCCC-------EEEEECCCCEEEEEc
Confidence 7642 1122223335689999999988 888888899999875
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-13 Score=109.69 Aligned_cols=232 Identities=8% Similarity=0.031 Sum_probs=149.7
Q ss_pred CccceeEEEEe--cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEe-ecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTA-HQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~-~~d~~i~vwd~~~ 101 (357)
+.....+++|+ ++ +++++..+ .|..|+. +++ ...+.. +...+.++++++++ ++.+ ..++.|.+||..+
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~-~~~--~~~~~~---~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSD-DGQ--LSPEMH---PSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEET-TSC--EEEEES---SCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEEC-CCC--eEEEEC---CCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 55678899999 66 77788888 9999999 665 566665 77889999999987 4444 4468999999977
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE----Ee-------------cCC
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS----VS-------------WDR 162 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~-------------~dg 162 (357)
++.......... .....+.++++++ +++++ |+ ..+
T Consensus 100 g~~~~~~~~~~~--------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 100 GEWESIADSFEG--------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp CCEEEEECEETT--------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred CcEEEEeeccCC--------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 754322211100 1123466788888 45554 32 134
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccce-eeeeEeeccccceeEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRH-MLVTTLVKHRSTVNAL 240 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~ 240 (357)
.|..++.. ++ +..+ ..+......++|+|++. +++.+.++.|.+||+.. .. .. .....+..+...+..+
T Consensus 154 ~l~~~~~~-g~-~~~~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~------~g-~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 154 WVFRLAPD-GT-LSAP-IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA------RG-ETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEEEECTT-SC-EEEE-ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS------SS-CEEEEEEEECCSSSCCCSE
T ss_pred EEEEECCC-CC-EEEe-ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC------CC-cCcCCCeEeeCCCCCCCeE
Confidence 56666654 33 3333 34556678999999994 66667789999999851 00 01 0011122345567889
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-Cc--eEEEecCCCeEEEeeCCCC
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-GD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
+++++|+++++. ++.|.+||.+ ++.. ..+..+.. +.+++|. ++ .|++++.++ +.-++..+.
T Consensus 224 ~~d~~G~l~v~~--~~~v~~~~~~-g~~~---~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 224 RVDAGGLIWASA--GDGVHVLTPD-GDEL---GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEBTTSCEEEEE--TTEEEEECTT-SCEE---EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EECCCCCEEEEc--CCeEEEECCC-CCEE---EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 999999866665 7889999987 4432 33333444 7777774 44 677777664 555555553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-14 Score=128.25 Aligned_cols=270 Identities=9% Similarity=0.018 Sum_probs=160.3
Q ss_pred EEecceEEEeeCC----ceEEEecc-CCccccceecc---ccCCCCceEEEEEecCc--eE-----EeecCCeEEEEecC
Q 038568 36 AVHNSLLYAASLN----EINVFDLI-SDYSHVDTFSN---DLSSSGSVKSITFHITK--IF-----TAHQDCKIRVWKIT 100 (357)
Q Consensus 36 ~~s~~~l~t~~~d----~i~iw~~~-~~~~~~~~~~~---~~~~~~~v~~l~~~~~~--l~-----~~~~d~~i~vwd~~ 100 (357)
...|++++-...+ .-.||... ..++....+.. ..+|...+..++|+||+ |+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 3447777665532 34555541 23332222221 01255578999999997 55 33445789999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe-------------EE
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS-------------FK 165 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~-------------i~ 165 (357)
+++... ...+. . .....++|+| +.|+.++.|.. |+
T Consensus 156 tg~~~~-~~~~~---------------------------~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 156 SGEWSK-VDVIE---------------------------G--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp TCCBCS-SCCBS---------------------------C--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred CCCCcC-CcccC---------------------------c--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 886431 00100 1 1125788999 67888887766 99
Q ss_pred EEEcCcchhh--hhcc-ccccccEEEEEEecCC-eEEEEeCCC----eEEEEEccccccccccccceeeeeEeeccccce
Q 038568 166 IWNASNYKCL--ESVN-KAHEDAVNAVVVSDNG-VVYTGSADG----RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 166 iwd~~~~~~~--~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
+|++.+++.. ..+. ..+...+..+.|+|+| +|+..+.++ .|.+++.. .. ....+..+...+
T Consensus 206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~----------~~-~~~~l~~~~~~~ 274 (695)
T 2bkl_A 206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG----------EK-DFRLLVKGVGAK 274 (695)
T ss_dssp EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT----------CS-SCEEEEECSSCC
T ss_pred EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC----------CC-ceEEeecCCCce
Confidence 9999887632 1111 2344678899999999 466655554 56666542 11 123333444555
Q ss_pred eEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCC-ccceEEEeecCc-eEEEecCCCeEEEeeCC-CCcc
Q 038568 238 NALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGH-TGALLCLINVGD-LLASGSADRTVRIWQRG-KENC 311 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~-~~~~ 311 (357)
....+ +++.+++... .++.|.+||+.++...........+ ...+..+++.++ ++++...|+..+||.+. ++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g-- 351 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG-- 351 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC--
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC--
Confidence 56666 5666444443 2588999999876421011112222 445666777665 77888889988888765 23
Q ss_pred eeeeeeecCC-cCceEEEEEeeCCCCCCCCeEEEE----EcCCCCeEEecC
Q 038568 312 YRCMAFLEGH-EKPVKSLVAISSSSSASNGIVSIG----SGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~l~----s~~~dg~v~~wd 357 (357)
.....+..+ .+.|..+.++|+++ .++ +....+.|++||
T Consensus 352 -~~~~~l~~~~~~~v~~~~~s~d~~-------~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 352 -KPVRTVQLPGVGAASNLMGLEDLD-------DAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp -CEEEECCCSSSSEECCCBSCTTCS-------EEEEEEEETTEEEEEEEEE
T ss_pred -CeeEEecCCCCeEEEEeecCCCCC-------EEEEEEcCCCCCCEEEEEE
Confidence 233444444 56788888888876 554 444557788775
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-13 Score=108.32 Aligned_cols=231 Identities=10% Similarity=0.046 Sum_probs=149.4
Q ss_pred ceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 31 IISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 31 ~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
...+++++ |++++ +...+ .|.+|+. .+......... +...+.++++.+++ |+.+..++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~-~~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLAT-GSTGTTVLPFN---GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCC---SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecC-CCcccceEeeC---CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe
Confidence 67889998 66665 43566 9999998 55433221121 34567889999876 555555889999998765321
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccccc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (357)
.+.. .....+..+++.+ .++++...++.|.+|+..+....... ....
T Consensus 101 -~~~~-----------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~ 149 (270)
T 1rwi_B 101 -VLPF-----------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGL 149 (270)
T ss_dssp -ECCC-----------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSC
T ss_pred -eeec-----------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccC
Confidence 1110 1224578899988 55555566789999986554432222 2233
Q ss_pred ccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 184 DAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 184 ~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
..+..+++++++. +++...++.|.+||... .........+...+.+++++++|.++++...++.|.+||
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAES----------NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTT----------CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCC----------CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 4678899999886 44445678999999761 111111122235678999999998777777788999999
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
........ ....+...+.+++++++ ++++...++.|++++....
T Consensus 220 ~~~~~~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 220 AGSTTSTV---LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCSCCEE---CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCccee---eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 87654221 11223345677777654 7778888999999999865
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-12 Score=108.11 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=143.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEe-ecC----CeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTA-HQD----CKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~-~~d----~~i~vwd 98 (357)
+...+.+++|+ |++++++..+ .|.+||. ++++....... +...+.++++++++ ++.+ ..+ +.|.+||
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~-~~~~~~~~~~~---~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINP-ETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECT-TTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeC-CCCcEEEEeeC---CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 66678999998 7777777888 9999999 77665544433 66789999999987 4444 444 5899999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEec-------CCeEEEEEcC
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSW-------DRSFKIWNAS 170 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~ 170 (357)
..++.....+... .+...+.++++++ ..++.++. .+.|..+|..
T Consensus 119 ~~~~~~~~~~~~~----------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 119 ENGDNLQDIIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp TTSCSCEEEECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred CCCCEEEEEEccC----------------------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence 8876543222110 2235688999998 44444443 3556666665
Q ss_pred cchhhhhccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+++.. .+ ......+..++++|++. + ++...++.|.+||+........ .........+.++ ..+..++++++|++
T Consensus 171 ~~~~~-~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~-~~~~~~~~~~~~~-~~~~~i~~d~~G~l 246 (333)
T 2dg1_A 171 FRTVT-PI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ-PFGATIPYYFTGH-EGPDSCCIDSDDNL 246 (333)
T ss_dssp SCCEE-EE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE-EEEEEEEEECCSS-SEEEEEEEBTTCCE
T ss_pred CCEEE-Ee-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc-cccceEEEecCCC-CCCCceEECCCCCE
Confidence 44332 22 22334578899999983 5 4445678999999852100000 0000011111222 46788999999998
Q ss_pred EEEEecCCeEEEEecccCCceeeeeecc---CCccceEEEeecCc--eEEEecCC
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEALW---GHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
+++...++.|.+||.+ ++....+.... +|...+.+++++++ .|+.++.+
T Consensus 247 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 247 YVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 8887778999999984 44332222111 12225677777654 55555444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-13 Score=123.57 Aligned_cols=241 Identities=10% Similarity=0.033 Sum_probs=150.8
Q ss_pred CCCceEEEEEecCc--eEEeecCC-----eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQDC-----KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
+...+..++|+||+ |+.+..++ .|++||+.+++...... . ..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------------------------------~-~~ 171 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL------------------------------E-RV 171 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE------------------------------E-EE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc------------------------------c-Cc
Confidence 44468899999997 55544332 89999999886543211 1 12
Q ss_pred cEEEEEEec--CeEEEEecCCe----------------EEEEEcCcchhhhh--cc-ccccccEEEEEEecCCe-EEEEe
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRS----------------FKIWNASNYKCLES--VN-KAHEDAVNAVVVSDNGV-VYTGS 201 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~----------------i~iwd~~~~~~~~~--~~-~~~~~~v~~~~~~~~~~-l~~~~ 201 (357)
.+..++|+| +.|+.++.++. |++|++.+++.... +. ..+...+..+.|+|+|. |+..+
T Consensus 172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (710)
T ss_dssp CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence 256789998 67888877765 99999988763311 11 22445678999999994 55554
Q ss_pred C-----CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC----CeEEEEecccCCceeee
Q 038568 202 A-----DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD----RWIVVWERERDHRMVFA 272 (357)
Q Consensus 202 ~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~ 272 (357)
. +..|.+||+........+. .....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++... ..
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~ 326 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGI---LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KW 326 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSS---CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GC
T ss_pred EccCCCccEEEEEECcccccccCCc---cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cc
Confidence 3 5789999987200000010 123334445555544 488888877766553 36999999876421 11
Q ss_pred eeccCCcc--ceEEEeec-Cc-eEEEecCCCe--EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE-
Q 038568 273 EALWGHTG--ALLCLINV-GD-LLASGSADRT--VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG- 345 (357)
Q Consensus 273 ~~~~~~~~--~v~~~~~~-~~-~l~~~~~dg~--i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~- 345 (357)
..+..|.. .+..+.+. ++ ++++...|+. |++|++.++ +.+..+..+.+.|..+.++|+++ .++
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~-------~l~~ 396 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDT-------EIFY 396 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC---CEEEEECCCSSEEEEEECCTTCS-------EEEE
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC---CEEEecCCCCceEEEEecCCCCC-------EEEE
Confidence 22223333 56677776 44 7777878875 556676565 34455666777889999998875 443
Q ss_pred E---cCCCCeEEecC
Q 038568 346 S---GSLNGEIKVWD 357 (357)
Q Consensus 346 s---~~~dg~v~~wd 357 (357)
+ ....+.|.+||
T Consensus 397 ~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEECSSCCCEEEEEE
T ss_pred EEeCCCCCCEEEEEE
Confidence 2 23456777775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=114.45 Aligned_cols=170 Identities=10% Similarity=0.005 Sum_probs=125.4
Q ss_pred ceeEEEEe--cceEEEeeCCceEEEeccCCcc-----------ccceeccccCCCCceEEEEEecCc-eEEeecCCeEEE
Q 038568 31 IISCLAVH--NSLLYAASLNEINVFDLISDYS-----------HVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~v 96 (357)
+++.++++ ..++++|+.+.+++|++ +..+ ...... +.. |+.|+| .+. |+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~-~~l~~~~~~~~~~~~~~~~~~----lp~-V~~l~f-d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGEL-QLLRDHITSDSTPLTFKWEKE----IPD-VIFVCF-HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEH-HHHHHHHHSSSCCCCCSEEEE----CTT-EEEEEE-ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEh-hHhhhhhccccccccceEEee----CCC-eeEEEE-CCCEEEEE-cCCcEEE
Confidence 68999999 88899999887777998 5433 111222 666 999999 333 6666 8899999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhh
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
||+.+........ .|...+.++.+.+..+++++.||.|.+||+.++....
T Consensus 111 ~dv~sl~~~~~~~------------------------------~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 111 LDLEELSEFRTVT------------------------------SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp EESSSTTCEEEEE------------------------------ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhhccCccc------------------------------eeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc
Confidence 9998765433222 4455677887777559999999999999998766532
Q ss_pred hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe------e---ccccceeEEEEecCCC
Q 038568 177 SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL------V---KHRSTVNALALNGDGS 247 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~ 247 (357)
+...|+|++|+|+| ++.|..||.+++|+.... .. .....+ . +|...|.++.|.+++.
T Consensus 161 -----~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~------~~--~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 161 -----LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNG------EM--EKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp -----EEESEEEEEECSSE-EEEEETTSCEEEEEEETT------EE--EEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred -----ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCc------cc--cccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 45689999999999 788999999999987621 10 002222 2 3678899999999998
Q ss_pred EEEEE
Q 038568 248 LLFSG 252 (357)
Q Consensus 248 ~l~~~ 252 (357)
++++-
T Consensus 227 flv~y 231 (388)
T 1xip_A 227 FLAVF 231 (388)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-13 Score=105.64 Aligned_cols=203 Identities=8% Similarity=0.032 Sum_probs=138.7
Q ss_pred ecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc-ccEEEEEEec--CeEE
Q 038568 81 HITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVSDLVVKQ--GLMY 156 (357)
Q Consensus 81 ~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~ 156 (357)
+|+. |++++.|+.|.+||.++++....+.. +. ..+.++.+.| ++++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~------------------------------~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPL------------------------------EKGWECNSVAATKAGEILF 52 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEEC------------------------------CTTCCCCEEEECTTSCEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCC------------------------------CccCCCcCeEECCCCCEEE
Confidence 4666 88999999999999988876655442 22 3567888888 5555
Q ss_pred EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeC-CCeEEEEEccccccccccccceeeeeEee---
Q 038568 157 SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLV--- 231 (357)
Q Consensus 157 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--- 231 (357)
+.++.|..||. +++.+..+.......+.++.+.++|. +++.+. ++.|..+|.. .+.+..+.
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-----------Gk~l~~~~~~~ 118 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-----------GEVLSKTEFET 118 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-----------SCEEEEEEECC
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-----------CCEEEEEeccC
Confidence 45788999998 88888888333345788899999995 555555 6777777653 22222221
Q ss_pred ---ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEe--ecCceEEEecCCCeEEEeeC
Q 038568 232 ---KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI--NVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 232 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vw~~ 306 (357)
.+......+++.++|+++++...++.|.+||.+ ++.+..... . ....... ..++.++++..++.|..+|.
T Consensus 119 ~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 119 GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---S-GTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---S-SCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred CCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---C-CCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 122345567788999999999999999999998 775443332 2 1222233 34558888888889999999
Q ss_pred CCCcceeeeeeecCC------cCceEEEEEeeCCC
Q 038568 307 GKENCYRCMAFLEGH------EKPVKSLVAISSSS 335 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~ 335 (357)
.+++ .+..+..+ -..+.++...+++.
T Consensus 194 ~tG~---~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 194 ESNR---IVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp TTCC---EEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred cCCc---EEEEecCCCCCCccccccccceEcCCCC
Confidence 9874 33333322 12377888888887
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-13 Score=105.61 Aligned_cols=187 Identities=11% Similarity=0.030 Sum_probs=136.8
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
+++|++++.+ .|.+||. ++++.+..+.. +. ..+.++.+.|++ ++. +.++.|..||. +++.+..+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~---~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~----- 73 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPL---EKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA----- 73 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEEC---CTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC-----
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCC---CccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC-----
Confidence 6889999999 9999999 89999999886 54 578899999998 554 55788999999 6765554432
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcchhhhhccc-----cccccEE
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLESVNK-----AHEDAVN 187 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~~v~ 187 (357)
.....+.++.+.+ +.+++.+. ++.|..+|. +++.+..+.. .+.....
T Consensus 74 ------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 74 ------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp ------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred ------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence 1123567778887 67777776 778888885 5666655521 1112344
Q ss_pred EEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 188 AVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 188 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
.++..+++ ++++...++.|..||.. .+.+..+... ..+.++.+.+++++++++..++.|..+|..++
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-----------G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-----------GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-----------SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-----------CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 56678888 57888889999999975 3344444433 34567788899999999988889999999988
Q ss_pred Cceeeee
Q 038568 267 HRMVFAE 273 (357)
Q Consensus 267 ~~~~~~~ 273 (357)
+.+....
T Consensus 197 ~~~w~~~ 203 (276)
T 3no2_A 197 RIVRRVN 203 (276)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 8654443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-12 Score=109.74 Aligned_cols=299 Identities=11% Similarity=0.048 Sum_probs=180.7
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccC--CccccceeccccCCCCceEEEEEe----
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLIS--DYSHVDTFSNDLSSSGSVKSITFH---- 81 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~l~~~---- 81 (357)
..+.+.+.++. ....+..+.|+ |+++++++.+ .|.+||+ . +.+.+..+. .......++|+
T Consensus 184 ~~t~~v~~~i~------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~-~~~t~~~v~~i~----~G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 184 GSTYEIKTVLD------TGYAVHISRLSASGRYLFVIGRDGKVNMIDL-WMKEPTTVAEIK----IGSEARSIETSKMEG 252 (567)
T ss_dssp TTTCCEEEEEE------CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSSSCCEEEEEE----CCSEEEEEEECCSTT
T ss_pred CCCCeEEEEEe------CCCCccceEECCCCCEEEEEcCCCeEEEEEC-CCCCCcEeEEEe----cCCCCceeEEccccC
Confidence 34456666666 33456789999 8999999999 9999999 5 677777776 34456799999
Q ss_pred cCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc-cEEEEEEec---Ce
Q 038568 82 ITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD-AVSDLVVKQ---GL 154 (357)
Q Consensus 82 ~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~---~~ 154 (357)
|++ +++...++++.++|..+.+....+.......+ ....|.. .+..+..++ ..
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~--------------------~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD--------------------EQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT--------------------TCCEESCCCEEEEEECSSSSEE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccc--------------------cccccCCCceEEEEEcCCCCEE
Confidence 576 44555679999999988776655543210000 0001222 566677666 45
Q ss_pred EEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEee-
Q 038568 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV- 231 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~- 231 (357)
++....+|.|.++|....+.+.............+.|+|+++ + ++...++.|.++|.. + .+....+.
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~------t----~kl~~~i~v 382 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK------E----GKLVAIEDT 382 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT------T----TEEEEEEEC
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC------C----CcEEEEEec
Confidence 666677899999998765422221123345567889999994 4 455578999999997 2 22222222
Q ss_pred ----ccccceeEEEEecCCCEE-EEEe-cCCeEEEEecccCCc----eeeeeeccCCccceEEEeecC--ceEEEecC--
Q 038568 232 ----KHRSTVNALALNGDGSLL-FSGG-CDRWIVVWERERDHR----MVFAEALWGHTGALLCLINVG--DLLASGSA-- 297 (357)
Q Consensus 232 ----~~~~~v~~~~~~~~~~~l-~~~~-~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-- 297 (357)
.|.+.-..+ ++|++..+ +++. .++.|.++|..+.+. ...+..+......-..+..+| .++.+...
T Consensus 383 gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 383 GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCC
Confidence 232211112 57875544 4443 468999999987321 223344333222222233444 46666542
Q ss_pred -----CCeEEEeeCCCCcc---eeeeeeec--------CCcCceEEEEEeeCCCCCCCCeEEEEEc-C---CCCeEEecC
Q 038568 298 -----DRTVRIWQRGKENC---YRCMAFLE--------GHEKPVKSLVAISSSSSASNGIVSIGSG-S---LNGEIKVWD 357 (357)
Q Consensus 298 -----dg~i~vw~~~~~~~---~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~l~s~-~---~dg~v~~wd 357 (357)
.+.|.++|+.+.+. .+.+..+. .-...+..+.|+|+++ ..++|. + .++.|.++|
T Consensus 462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~------~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT------EVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS------EEEEEEECCTTSCCEEEEEE
T ss_pred CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC------EEEEEeecCCCCCCcEEEEE
Confidence 45899999987510 11112221 1245788999999997 344442 2 368888775
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-11 Score=97.01 Aligned_cols=269 Identities=8% Similarity=-0.031 Sum_probs=168.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee-cCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH-QDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~-~d~~i~vwd~~~~ 102 (357)
....+.+++++ |++.++...+ .|.+||. . ++.. .+... .....+.++++.+++ ++.+. .++.|..||.. +
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~-~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQ-S-GRIK-EFEVP-TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-SCEE-EEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECC-C-CceE-EEECC-CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34578899998 6666665566 9999998 5 3332 22211 144678999999877 44444 47889999987 4
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+. ..+.. + .....+.++++.+ .++++...++.|..+|.. ++.......
T Consensus 93 ~~-~~~~~-~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 93 GF-TEYPL-P---------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp CE-EEEEC-S---------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred Ce-EEecC-C---------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 32 21111 0 1235678888887 445555557899999987 443321112
Q ss_pred cccccEEEEEEecCCeEEEE-eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGVVYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.....+..+++.+++.+..+ ..++.|..+|.. . ... ..........+..++++++++++++...++.|.
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~------g---~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITNT------G---KLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECTT------C---CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECCC------C---cEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 23457889999999865544 447889999864 1 111 111223345688999999998777766778899
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+||. ++... .. ....+...+.+++++++ +.++...++.|..|+.. ++ .. ...+......+.++++.+++.
T Consensus 213 ~~~~-~g~~~-~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~-~~~~~~~~~~~~~i~~~~~g~-- 284 (300)
T 2qc5_A 213 RITT-TGEIS-EY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-IQ-EYQLQTENAEPHGITFGKDGS-- 284 (300)
T ss_dssp EECT-TCCEE-EE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE-EEECCSTTCCCCCEEECTTSC--
T ss_pred EEcC-CCcEE-EE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-EE-EEECCccCCccceeEeCCCCC--
Confidence 9998 34322 11 22233455677777765 55555567899999984 32 12 222333445688999999987
Q ss_pred CCCeEEEEEcCCCCeEEec
Q 038568 338 SNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~w 356 (357)
++++.. . .|..+
T Consensus 285 -----l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 285 -----VWFALK-C-KIGKL 296 (300)
T ss_dssp -----EEEECS-S-EEEEE
T ss_pred -----EEEEcc-C-ceEEe
Confidence 666655 4 55443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-13 Score=121.95 Aligned_cols=237 Identities=10% Similarity=0.017 Sum_probs=149.0
Q ss_pred CccceeEEEEe--cceEE-----EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCe----
Q 038568 28 HHMIISCLAVH--NSLLY-----AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK---- 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~-----t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~---- 93 (357)
|...+.+++|| |++|| .|+.+ .|++||+ .+++.+..-.. .......++|+||+ |+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl-~tg~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV-DSGEWSKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET-TTCCBCSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC-CCCCCcCCccc---CcccccceEEecCCCEEEEEEecCCCCCc
Confidence 66689999999 88888 56667 9999999 88776511111 11112689999997 888877765
Q ss_pred ---------EEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 94 ---------IRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 94 ---------i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++|++.++... ..+...+ .+...+..+.|+| ++|+.++.+
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~---------------------------~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERT---------------------------GDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCC---------------------------CCTTCEEEEEECTTSCCEEEEEEE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecC---------------------------CCCEEEEEEEECCCCCEEEEEEeC
Confidence 999999877532 1121111 4456788999999 677777666
Q ss_pred C----eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeC----CCeEEEEEccccccccccccceeeeeEeecc
Q 038568 162 R----SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 162 g----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
+ .|.+||..+++ ...+ ..+...+....+ +++.++..+. ++.|.+||+.. ... .....+..+
T Consensus 248 ~~~~~~l~~~~~~~~~-~~~l-~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~------~~~--~~~~~l~~~ 316 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKD-FRLL-VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK------PAR--ASWKEIVPE 316 (695)
T ss_dssp TTTEEEEEEECTTCSS-CEEE-EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB------CSG--GGCEEEECC
T ss_pred CCCceEEEEEcCCCCc-eEEe-ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC------CCc--cCCeEEecC
Confidence 5 67777665443 3334 334444555555 4443444433 58899999862 110 001222222
Q ss_pred --ccceeEEEEecCCCEEEEEecCCeEEEEecc-cCCceeeeeeccCC-ccceEEEeecCc--eEE----EecCCCeEEE
Q 038568 234 --RSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHRMVFAEALWGH-TGALLCLINVGD--LLA----SGSADRTVRI 303 (357)
Q Consensus 234 --~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~--~l~----~~~~dg~i~v 303 (357)
...+..++++ ++.++++...|+..++|.+. +++. ...+..+ ...+..++++++ .++ +....+.|++
T Consensus 317 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 317 DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP---VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE---EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe---eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 4567888888 67788888999998888765 2332 2223333 556666776654 444 2334578999
Q ss_pred eeCCCCc
Q 038568 304 WQRGKEN 310 (357)
Q Consensus 304 w~~~~~~ 310 (357)
||+.+++
T Consensus 393 ~d~~~g~ 399 (695)
T 2bkl_A 393 TSVSTGK 399 (695)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9998764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=120.47 Aligned_cols=244 Identities=8% Similarity=-0.048 Sum_probs=146.4
Q ss_pred EEEeccCCccccceeccccCCCC-----ceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceee
Q 038568 51 NVFDLISDYSHVDTFSNDLSSSG-----SVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 51 ~iw~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
...|. .+++.+..+.. +.. .+..++|+|++ |+.... +..|.+||+.+++......
T Consensus 13 ~~~d~-~~g~~~~~l~~---~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~----------- 77 (396)
T 3c5m_A 13 TFVDS-DTQVKVTRLTP---TDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE----------- 77 (396)
T ss_dssp EEECT-TTCCEEEECSC---TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-----------
T ss_pred eeecC-CCCcceEEEec---CCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-----------
Confidence 34466 66666666654 333 36788999997 555533 2368888988765322111
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEE----------
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNA---------- 188 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---------- 188 (357)
.+......+.|+| +.|+.++.++.|.+||+.+++..... ..+......
T Consensus 78 -------------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 78 -------------------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp -------------------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSS
T ss_pred -------------------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCC
Confidence 1112222367888 78888888999999999887654433 222222111
Q ss_pred ---------EEEecCCe-EEEE-----eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEE
Q 038568 189 ---------VVVSDNGV-VYTG-----SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSG 252 (357)
Q Consensus 189 ---------~~~~~~~~-l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 252 (357)
..++|++. ++.. ..+..|.+||+. . .+.. .+..+...+..+.|+| +++.|+..
T Consensus 138 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~------~----g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 138 KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE------T----GELE-VIHQDTAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT------T----CCEE-EEEEESSCEEEEEEETTEEEEEEEE
T ss_pred ccccccccccccCCCCcceeeeeeccCCCcceEEEEECC------C----CcEE-eeccCCcccccceECCCCCCEEEEE
Confidence 24566663 3322 456789999987 2 1121 2224566788999999 78877766
Q ss_pred ecC------CeEEEEecccCCceeeeeeccCC--ccceEEEeecCc--eEEEecCC-----CeEEEeeCCCCcceeeeee
Q 038568 253 GCD------RWIVVWERERDHRMVFAEALWGH--TGALLCLINVGD--LLASGSAD-----RTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 253 ~~d------g~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~--~l~~~~~d-----g~i~vw~~~~~~~~~~~~~ 317 (357)
+.+ ..|.+||+..+... .+..+ ...+..+.|+++ +|+.++.+ +.|++||+.+++. ..+..
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~ 281 (396)
T 3c5m_A 207 HEGPHDLVDARMWLVNEDGSNVR----KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMV 281 (396)
T ss_dssp ECSCSSSCSCCCEEEETTSCCCE----ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEE
T ss_pred ecCCCCCCCceEEEEECCCCcee----EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeee
Confidence 543 36888888755422 11122 234666777765 56655443 4599999988742 22222
Q ss_pred ecCCcCceEEEEEee-CCCCCCCCeEEEEEcC----------------CCCeEEecC
Q 038568 318 LEGHEKPVKSLVAIS-SSSSASNGIVSIGSGS----------------LNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~-~~~~~~~~~~~l~s~~----------------~dg~v~~wd 357 (357)
..+ .. +.|+| +++ ++++++ .++.|.+||
T Consensus 282 ~~~----~~-~~~s~~dg~-------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 282 MPP----CS-HLMSNFDGS-------LMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp CCS----EE-EEEECSSSS-------EEEEEECCC----------CCCCCCEEEEEE
T ss_pred CCC----CC-CCccCCCCc-------eEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 222 23 88999 987 776643 346788875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=118.66 Aligned_cols=238 Identities=7% Similarity=-0.003 Sum_probs=152.6
Q ss_pred CccceeEEEEe--cceEEEee-----CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCe----
Q 038568 28 HHMIISCLAVH--NSLLYAAS-----LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK---- 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~-----~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~---- 93 (357)
|...+..++|| |++||.++ .. .|++||+ .+++...... ....+..++|+||+ |+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~-~tg~~~~~~~----~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV-DGAKELPDVL----ERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET-TTTEEEEEEE----EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC-CCCCCCcccc----cCcccceEEEEeCCCEEEEEEECCccccc
Confidence 55578899999 88888653 23 7999999 8877665332 22236789999987 777777665
Q ss_pred ------------EEEEecCCcccee-eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEE
Q 038568 94 ------------IRVWKITASRQHQ-LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV 158 (357)
Q Consensus 94 ------------i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~ 158 (357)
|.+|++.+++... .+.... .+...+..+.|+| ++|+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~---------------------------~~~~~~~~~~~SpDg~~l~~~ 250 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFP---------------------------DEPKWMGGAELSDDGRYVLLS 250 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCT---------------------------TCTTCEEEEEECTTSCEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccC---------------------------CCCeEEEEEEEcCCCCEEEEE
Confidence 9999998765321 111110 3455678899999 667766
Q ss_pred ec-----CCeEEEEEcCc------ch-hhhhccccccccEEEEEEecCC-eEEEEeC----CCeEEEEEccccccccccc
Q 038568 159 SW-----DRSFKIWNASN------YK-CLESVNKAHEDAVNAVVVSDNG-VVYTGSA----DGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 159 ~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~----d~~i~i~d~~~~~~~~~~~ 221 (357)
+. +..|.+||+.+ +. ....+ ..+...+.. .|++++ .|+..+. .+.|.+||+.. ..
T Consensus 251 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~------~~ 322 (710)
T 2xdw_A 251 IREGCDPVNRLWYCDLQQESNGITGILKWVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD------PE 322 (710)
T ss_dssp EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS------CC
T ss_pred EEccCCCccEEEEEECcccccccCCccceEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC------CC
Confidence 54 56899999976 43 34444 344444444 477777 4544443 34699999862 11
Q ss_pred cceeeeeEeecccc--ceeEEEEecCCCEEEEEecCCe--EEEEecccCCceeeeeeccCCccceEEEeecCc--eEE-E
Q 038568 222 SRHMLVTTLVKHRS--TVNALALNGDGSLLFSGGCDRW--IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA-S 294 (357)
Q Consensus 222 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-~ 294 (357)
. .....+..+.. .+..++|++++.++++...|+. |.+|++.+++.. ..+..+.+.+..++++++ .++ +
T Consensus 323 ~--~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~---~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 323 E--SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL---KIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp G--GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE---EEECCCSSEEEEEECCTTCSEEEEE
T ss_pred c--ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE---EecCCCCceEEEEecCCCCCEEEEE
Confidence 0 01223333433 6788999987788888888885 566676556532 334445677778877654 333 3
Q ss_pred ec---CCCeEEEeeCCCCc
Q 038568 295 GS---ADRTVRIWQRGKEN 310 (357)
Q Consensus 295 ~~---~dg~i~vw~~~~~~ 310 (357)
.+ ..+.|++||+.+++
T Consensus 398 ~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECSSCCCEEEEEETTSSS
T ss_pred EeCCCCCCEEEEEECCCCc
Confidence 22 35789999998764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-12 Score=116.37 Aligned_cols=268 Identities=11% Similarity=0.049 Sum_probs=157.5
Q ss_pred EecceEEEeeCC----ceEEEeccCC----cccccee-cc---ccCCCCceEEEEEecCc--eEEeecC-----CeEEEE
Q 038568 37 VHNSLLYAASLN----EINVFDLISD----YSHVDTF-SN---DLSSSGSVKSITFHITK--IFTAHQD-----CKIRVW 97 (357)
Q Consensus 37 ~s~~~l~t~~~d----~i~iw~~~~~----~~~~~~~-~~---~~~~~~~v~~l~~~~~~--l~~~~~d-----~~i~vw 97 (357)
..|++++-...+ .-.+|.. +. +.....+ .. ..++...+..++|+||+ |+.++.+ ..|++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVR-PADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEE-ETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEE-cCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 347777765533 3566665 31 2222222 11 00133478899999997 5554433 469999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCC--------------
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDR-------------- 162 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg-------------- 162 (357)
|+.+++..... .+...+..++|+| +.|+.++.++
T Consensus 195 dl~tg~~~~~~-------------------------------~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 195 GVADGKPLADE-------------------------------LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp ETTTCCEEEEE-------------------------------EEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred ECCCCCCCCcc-------------------------------CCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence 99988753321 1111234667777 5666666554
Q ss_pred eEEEEEcCcchhhh--hcc-ccccccEEEEEEecCC-eEEEEeCC-----CeEEEEEccccccccccccceeeeeEeecc
Q 038568 163 SFKIWNASNYKCLE--SVN-KAHEDAVNAVVVSDNG-VVYTGSAD-----GRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 163 ~i~iwd~~~~~~~~--~~~-~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
.|++|++.+++... .+. ..+...+..+.|+||| +|+..+.+ ..|++||+. ... ......+..+
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------~~~--~~~~~~l~~~ 315 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT------NGK--IGPVTALIPD 315 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE------TTE--ECCCEEEECS
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC------CCC--CcccEEecCC
Confidence 38999998765321 121 1223358899999999 46555543 489999986 210 0102334444
Q ss_pred ccceeEEEEecCCCEEEEEec----CCeEEEEecccCC-ceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCC
Q 038568 234 RSTVNALALNGDGSLLFSGGC----DRWIVVWERERDH-RMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRG 307 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~ 307 (357)
...+... ++|+|+.|+..+. ++.|.+||+.++. .. ...+..+...+..+++.++ ++++...|+..+||.+.
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF--DTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE--EEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc--EEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 4444444 3488888887765 4459999998752 22 2222334445666777666 77888889988877665
Q ss_pred -CCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeEEEE----EcCCCCeEEecC
Q 038568 308 -KENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIVSIG----SGSLNGEIKVWD 357 (357)
Q Consensus 308 -~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~----s~~~dg~v~~wd 357 (357)
++ .....+.. +...|..+.++|+++ .|+ +....++|.+||
T Consensus 393 ~~g---~~~~~l~~~~~~~v~~~~~s~d~~-------~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 393 LDG---KPAGAVSLPGIGSASGLSGRPGDR-------HAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp TTS---CEEEECBCSSSCEEEEEECCBTCS-------CEEEEEEETTEEEEEEEEE
T ss_pred CCC---CceeeccCCCCeEEEEeecCCCCC-------EEEEEEcCCCCCCEEEEEE
Confidence 33 23344443 356788999999876 444 334456777775
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=106.44 Aligned_cols=215 Identities=8% Similarity=0.059 Sum_probs=135.7
Q ss_pred ceeEEEEe--cceEEEeeC-----C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---------
Q 038568 31 IISCLAVH--NSLLYAASL-----N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD--------- 91 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~-----d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d--------- 91 (357)
.+..++|+ |++||.++. . .|.+|++ .+++...... +.. +..++|+|++ |+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~-~~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADL-ETLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEET-TTTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEEC-CCCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 46778999 888887763 3 5888998 7766555544 333 9999999987 6666532
Q ss_pred ------------------CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 92 ------------------CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 92 ------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
..|.+||+.+++....+. . . .+..+.|+|
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~------------------------------~-~-~~~~~~~spd 181 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE------------------------------K-P-RFSSGIWHRD 181 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEE------------------------------E-E-TTCEEEEETT
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeec------------------------------C-C-CcccccCCCC
Confidence 568888887665322221 2 2 566778888
Q ss_pred CeEEEEecCC-------eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCC--------CeEEEEEcccccc
Q 038568 153 GLMYSVSWDR-------SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD--------GRIRVWERSVVDH 216 (357)
Q Consensus 153 ~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------~~i~i~d~~~~~~ 216 (357)
.+++++..++ ...+|.+.+++ ...+ ..+ ..+..+ +|+| +|+.++.+ ..|.+|| .
T Consensus 182 g~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l-~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~---- 251 (347)
T 2gop_A 182 KIVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM-FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G---- 251 (347)
T ss_dssp EEEEEEECCCSSCCSSCCEEEEEEETTE-EEEE-EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S----
T ss_pred eEEEEEecccccccccccccEEEeCCCc-eEEe-ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C----
Confidence 6444554432 33455444443 3333 223 444444 8998 46665543 3677777 3
Q ss_pred ccccccceeeeeEeeccccceeE-EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNA-LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
.........+...+.. +.|+ ++ ++++++.++.+++| +.+++. ..+..+...+.++++++.+++++
T Consensus 252 -------~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~----~~~~~~~~~v~~~~~s~~~~~~~ 317 (347)
T 2gop_A 252 -------KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI----KPIAKGRHWIMGFDVDEIVVYLK 317 (347)
T ss_dssp -------SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE----EEEECSSSEEEEEEESSSEEEEE
T ss_pred -------CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce----EEEecCCCeEEeeeeeCcEEEEE
Confidence 1122223345667776 8999 88 89999999999999 884432 22233467788888888655666
Q ss_pred cCCCeE-EEeeCC
Q 038568 296 SADRTV-RIWQRG 307 (357)
Q Consensus 296 ~~dg~i-~vw~~~ 307 (357)
+.++.. .+|.+.
T Consensus 318 ~~~~~~~~l~~~~ 330 (347)
T 2gop_A 318 ETATRLRELFTWD 330 (347)
T ss_dssp ECSSSCCEEEEES
T ss_pred cCCCChHHheEeC
Confidence 666654 777766
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-11 Score=96.32 Aligned_cols=232 Identities=9% Similarity=0.007 Sum_probs=151.2
Q ss_pred CCCceEEEEEecCc-eEEeec-CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQ-DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
+...+.++++.+++ +..+.. ++.|.+||.. ++. ..+.. + .....+.++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~-~---------------------------~~~~~~~~i 62 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPL-P---------------------------TPDAKVMCL 62 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEC-S---------------------------STTCCEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecC-C---------------------------cccCceeeE
Confidence 45689999999987 555544 7899999987 432 22111 0 223568889
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCCeEEE-EeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
++.+ .++++...++.|..||.. ++ ...+. ......+..+++.+++.+.. ...++.|..||.. . .
T Consensus 63 ~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~------g---~- 130 (299)
T 2z2n_A 63 TISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD------G---K- 130 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT------C---C-
T ss_pred EECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC------C---C-
Confidence 9988 444444457889999976 32 22221 12445788999999886544 4567899999863 0 1
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVR 302 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~ 302 (357)
............+..++++++++++++...++.|..||. +++.. .. ........+..++++++ ++++...++.|.
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EF-KIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-Ee-eCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 111112223456889999999988877777889999998 55432 11 12233445667777654 555555678999
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+||. +++ ... .....+...+.++++++++. ++++...++.|..||
T Consensus 208 ~~~~-~g~-~~~-~~~~~~~~~~~~i~~~~~g~-------l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 208 RITT-SGE-ITE-FKIPTPNARPHAITAGAGID-------LWFTEWGANKIGRLT 252 (299)
T ss_dssp EECT-TCC-EEE-EECSSTTCCEEEEEECSTTC-------EEEEETTTTEEEEEE
T ss_pred EECC-CCc-EEE-EECCCCCCCceeEEECCCCC-------EEEeccCCceEEEEC
Confidence 9999 553 221 22334556789999999987 777766677787764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-11 Score=99.21 Aligned_cols=242 Identities=9% Similarity=0.049 Sum_probs=150.0
Q ss_pred cceeEEEEe--cceEEE-------eeCC-ceEEEeccCCccccceec-cccCCCCceEEEEEecC-c-eEEeecCCeEEE
Q 038568 30 MIISCLAVH--NSLLYA-------ASLN-EINVFDLISDYSHVDTFS-NDLSSSGSVKSITFHIT-K-IFTAHQDCKIRV 96 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t-------~~~d-~i~iw~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~-~-l~~~~~d~~i~v 96 (357)
....+++|+ ++++++ +..+ .|.+||. .+++...... ...++...+.+++++++ + |+.++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeC-CCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 346788998 666666 5667 9999998 6655432211 00014467899999998 6 666665568999
Q ss_pred EecCCccceee-eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC------------
Q 038568 97 WKITASRQHQL-VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD------------ 161 (357)
Q Consensus 97 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d------------ 161 (357)
||.+ ++.... ..... ......+.++++.+ +++++...+
T Consensus 97 ~d~~-g~~~~~~~~~~~--------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSE--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp EETT-SCEEECCSBCTT--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred EeCC-CCEEEEEeccCC--------------------------CccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 9987 543221 11000 01224577889988 444444443
Q ss_pred ---CeEEEEEcCcchhhhhccccccccEEEEEEe----cCC-eEEEE-eCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 162 ---RSFKIWNASNYKCLESVNKAHEDAVNAVVVS----DNG-VVYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 162 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~-~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+.|..+|.. ++... + .........++++ |++ .++++ ..++.|.+||+.... ..........+..
T Consensus 150 ~~~~~l~~~~~~-g~~~~-~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g----~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQMIQ-V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA----KIENKKVWGHIPG 222 (314)
T ss_dssp SSCEEEEEECTT-SCEEE-E-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT----EEEEEEEEEECCC
T ss_pred CCCCeEEEECCC-CCEEE-e-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC----ccccceEEEECCC
Confidence 567777765 43322 2 2333456889999 998 45444 567899999975100 0001112223333
Q ss_pred cc-cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCC
Q 038568 233 HR-STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 233 ~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~ 308 (357)
+. ..+..++++++|+++++...++.|.+||.++++.... +..+...+.+++++++ ++++...++.|..|++..
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR---IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE---EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE---EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 33 5678899999999888877888999999986653322 2334466778887654 444555678899999875
Q ss_pred C
Q 038568 309 E 309 (357)
Q Consensus 309 ~ 309 (357)
.
T Consensus 300 ~ 300 (314)
T 1pjx_A 300 N 300 (314)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=108.41 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=121.4
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCcchhh---------hhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL---------ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
+++.+++++ .++++|+.+ .+.+|++...+.. ......+.. |+.++| .+..|+++ .++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEch
Confidence 688899998 888888887 4666998755411 111124556 999999 33367777 88999999997
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceE
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLL 292 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 292 (357)
.. . .......+..++.++.+.+. .+++++.||.|.+||+.++.... +...|.|++|+++-+
T Consensus 115 sl------~----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG~ 175 (388)
T 1xip_A 115 EL------S----EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQL 175 (388)
T ss_dssp ST------T----CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSEE
T ss_pred hh------h----ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCce
Confidence 22 1 12233455667887777654 38889999999999999776321 345799999999988
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeee------c---CCcCceEEEEEeeCCC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFL------E---GHEKPVKSLVAISSSS 335 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~------~---~h~~~v~~~~~~~~~~ 335 (357)
+.|..||.+++|+....+.. ....+ . +|...|.+|.|.++..
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~-~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEME-KQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EEEETTSCEEEEEEETTEEE-EEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred EEEEcCCcEEEEcCCCcccc-ccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 99999999999988775310 02233 2 4778999999999876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-11 Score=98.39 Aligned_cols=239 Identities=8% Similarity=0.043 Sum_probs=147.8
Q ss_pred CCCceEEEEEecCc-eEEe--------ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 71 SSGSVKSITFHITK-IFTA--------HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~--------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
.-....+++|.+++ ++.+ ..++.|.+||..+++.... .. +. ..++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-~~------------------------~~~~ 69 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK-PE------------------------VNGY 69 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC-CE------------------------ETTE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee-cc------------------------cCCC
Confidence 34456899999877 4444 6788999999877654221 10 00 0024
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh-cc---ccccccEEEEEEecCCeEEEEeC-C-----------
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES-VN---KAHEDAVNAVVVSDNGVVYTGSA-D----------- 203 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~~---~~~~~~v~~~~~~~~~~l~~~~~-d----------- 203 (357)
...+.++++++ ..+..++..+.|.+||.. ++.... .. ......+.++++++++.+..+.. +
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45688899987 466666666689999987 654322 21 11224578999999996554443 3
Q ss_pred ----CeEEEEEccccccccccccceeeeeEeeccccceeEEEEe----cCCCEEEEE-ecCCeEEEEeccc-CCc--eee
Q 038568 204 ----GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN----GDGSLLFSG-GCDRWIVVWERER-DHR--MVF 271 (357)
Q Consensus 204 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~vwd~~~-~~~--~~~ 271 (357)
+.|..||.. ... ..+..+......++++ |+++.|+.+ ..++.|.+||... +.. ...
T Consensus 149 ~~~~~~l~~~~~~-----------g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~ 216 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-----------GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp SSSCEEEEEECTT-----------SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred cCCCCeEEEECCC-----------CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence 456666543 111 1112233446789999 999765555 5678999999873 321 112
Q ss_pred eeeccCCc-cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 272 AEALWGHT-GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 272 ~~~~~~~~-~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
...+..+. .....++++++ ++++...++.|.+||..+++ .+..+..+...+.+++++|+++ .++++..
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~------~l~v~~~ 287 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTK------TIFVTEH 287 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSS------EEEEEET
T ss_pred EEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCC------EEEEEeC
Confidence 22333333 45666777655 66666678899999998653 3344455667899999999886 2344555
Q ss_pred CCCeEEecC
Q 038568 349 LNGEIKVWD 357 (357)
Q Consensus 349 ~dg~v~~wd 357 (357)
.++.|..||
T Consensus 288 ~~~~l~~~~ 296 (314)
T 1pjx_A 288 ENNAVWKFE 296 (314)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEe
Confidence 667777664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-10 Score=94.06 Aligned_cols=219 Identities=11% Similarity=0.043 Sum_probs=137.6
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
...-..+..|+++. +++...++.|..||..+++.. .+ .....+.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-------------------------------~~~~~~~~ 58 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-------------------------------TMDAPVSS 58 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-------------------------------ECSSCEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-------------------------------eCCCceEE
Confidence 33455688899853 566667889999999876531 11 22356889
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcchhhhhccc---cccccEEEEEEecCCeEEEEeC----------CCeEEEEEccc
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNK---AHEDAVNAVVVSDNGVVYTGSA----------DGRIRVWERSV 213 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~----------d~~i~i~d~~~ 213 (357)
+++.+ ..++.+. ++.|.+||.++++....... .....++.++++|+|.+..+.. ...-.+|.+..
T Consensus 59 i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 59 VALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred EEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 99998 4455555 56899999887654322101 1234578999999997555542 12345555431
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEecc--cCCce--eeeeeccCCccceEEEeec
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWERE--RDHRM--VFAEALWGHTGALLCLINV 288 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~--~~~~~--~~~~~~~~~~~~v~~~~~~ 288 (357)
.... ..+.......+.++|+|+++.|+ +.+.++.|.+|++. ++... ..+..+..+......++++
T Consensus 138 ---------~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 138 ---------DHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp ---------TSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred ---------CCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 0111 11222334568899999998665 45567899999974 33311 1222222333455666766
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSS 335 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 335 (357)
++ +.++...++.|..||..++ +.+..+..+...+++++|. |+++
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTC---CEEEEEECSSSBEEEEEEESGGGC
T ss_pred CCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCCCCceEEEEeCCCCC
Confidence 54 5566666788999999877 4555666666789999998 7765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-11 Score=100.24 Aligned_cols=267 Identities=9% Similarity=0.034 Sum_probs=161.9
Q ss_pred EEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCc
Q 038568 35 LAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPT 113 (357)
Q Consensus 35 ~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 113 (357)
+...+..+++++.+ .|..+|. ++++.+..... ............+.++.++.++.|..+|..+++..........
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~-~tG~~~W~~~~---~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNT-SDGTVAWQTKV---AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEET-TTCCEEEEEEC---SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred ceEeCCEEEEEcCCCEEEEEEC-CCCCEEEEEeC---CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence 34447788888888 9999999 88887766653 2221122233445588888999999999998876544432110
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcccccccc--------
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA-------- 185 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------- 185 (357)
.. ..... .........++.++.++.|..+|..+++.+..........
T Consensus 175 ~~---------------------~~~~~----~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 175 SL---------------------SLRGE----SAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp -------------------------CCC----CCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred ce---------------------eecCC----CCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 00 00000 1112224678888889999999999988876652111100
Q ss_pred -EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 -VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 -v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+.......++.+++++.++.+..+|.++ .+.+.... ......+.. ++..++.++.++.|..+|..
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~t----------G~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLRS----------GQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETTT----------CCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETT
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECCC----------CcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECC
Confidence 1111111256788888899999999872 22222222 122333433 35678888889999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEE
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSI 344 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l 344 (357)
+++........ ...........++.|+.++.+|.|.++|..+++ .+.........+.......++ .|
T Consensus 296 tG~~~w~~~~~--~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~---~~~~~~~~~~~~~~~~~~~~~--------~l 362 (376)
T 3q7m_A 296 GGVTLWTQSDL--LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGR---FVAQQKVDSSGFQTEPVAADG--------KL 362 (376)
T ss_dssp TCCEEEEECTT--TTSCCCCCEEETTEEEEECTTSEEEEEETTTCC---EEEEEECCTTCBCSCCEEETT--------EE
T ss_pred CCcEEEeeccc--CCCcccCCEEECCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCcceeCCEEECC--------EE
Confidence 88754332211 112223333456788899999999999999984 333333322333322222343 67
Q ss_pred EEcCCCCeEEecC
Q 038568 345 GSGSLNGEIKVWD 357 (357)
Q Consensus 345 ~s~~~dg~v~~wd 357 (357)
+.++.||.|..||
T Consensus 363 ~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 363 LIQAKDGTVYSIT 375 (376)
T ss_dssp EEEBTTSCEEEEE
T ss_pred EEEeCCCEEEEEe
Confidence 7788899998875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-10 Score=92.27 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=138.3
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~ 102 (357)
+..--.+..|+ +.++++...+ .|..||. .+++. ..+. ....+.++++++++ |+.+. ++.|.+||..++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~~----~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS-FTKQV-QRVT----MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEET-TTCCE-EEEE----CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEEC-CCCcE-EEEe----CCCceEEEEECCCCCEEEEE-CCeEEEEECCCC
Confidence 33455677887 4566666677 9999999 66543 3444 56789999999987 66665 568999998876
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEe-cC---------CeEEEEEcCc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVS-WD---------RSFKIWNASN 171 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~d---------g~i~iwd~~~ 171 (357)
+.......... .....+.++++.+ ..+..++ .+ ..-.+|.+..
T Consensus 84 ~~~~~~~~~~~--------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 84 SAVVLATVDND--------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEEEEEECCTT--------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred cEEEEEecCCC--------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 53322211100 1234578899988 4444443 21 2234554432
Q ss_pred chhhhhccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEcccccccccccc-ceeeeeEeeccccceeEEEEecCCCE
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKS-RHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
...+..+ .......+.++|+|++. | ++.+.++.|.+||+... .+.. ..+....+..+......++++++|++
T Consensus 138 ~g~~~~~-~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~----~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 138 DHHVKKY-FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ----TGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp TSCEEEE-EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT----TCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CCCEEEE-eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC----CCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 2222222 23344568899999984 4 55666889999987310 1110 11222333334466789999999988
Q ss_pred EEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
.++...++.|.+||..+++... .+..+...+.+++|.+
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~---~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQ---TVKLPVDKTTSCCFGG 250 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEE---EEECSSSBEEEEEEES
T ss_pred EEEEcCCCEEEEEcCCCceEEE---EEECCCCCceEEEEeC
Confidence 8877778899999998777443 3333456688889873
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-10 Score=90.85 Aligned_cols=232 Identities=12% Similarity=0.024 Sum_probs=148.6
Q ss_pred CCCceEEEEEecCc-eEEee-cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAH-QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....+.++++.+++ +..+. .++.|.+||.. ++... +. .+ .....+.++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~-~~---------------------------~~~~~~~~i 67 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE-VP---------------------------TPDAKVMCL 67 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE-CS---------------------------STTCCEEEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE-CC---------------------------CCCCcceeE
Confidence 45678899999887 44444 57899999987 43221 11 11 223567888
Q ss_pred EEec-C-eEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCCeEEE-EeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ-G-LMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
++.+ . +.++...++.|..+|.. ++.. .+. ......+..+++.+++.+.. ...++.|..+|.. . ..
T Consensus 68 ~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g--------~~ 136 (300)
T 2qc5_A 68 IVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G--------TI 136 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S--------CE
T ss_pred EECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C--------CE
Confidence 8888 4 44444447889999987 4432 221 22346788999999886544 4447889999864 1 11
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVR 302 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~ 302 (357)
. ...+......+..++++++++++++...++.|..+|. +++.. .. ....+...+..+.++++ +.++....+.|.
T Consensus 137 ~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 137 Y-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EY-PLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred E-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Ee-eCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 1 1112223456889999999997766666888999998 44422 11 22233445677777655 555555677899
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+. +++ .. ......+...+.++++.+++. +.++...++.|..||
T Consensus 213 ~~~~-~g~-~~-~~~~~~~~~~~~~i~~d~~g~-------l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 213 RITT-TGE-IS-EYDIPTPNARPHAITAGKNSE-------IWFTEWGANQIGRIT 257 (300)
T ss_dssp EECT-TCC-EE-EEECSSTTCCEEEEEECSTTC-------EEEEETTTTEEEEEC
T ss_pred EEcC-CCc-EE-EEECCCCCCCceEEEECCCCC-------EEEeccCCCeEEEEC
Confidence 9998 332 11 122333456789999999987 777766677887765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-10 Score=91.69 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=129.8
Q ss_pred eEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 75 VKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 75 v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.....|+|+. +++...++.|..||..+++.. .+ .....+.++.+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-------------------------------~~~~~v~~i~~~ 98 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-------------------------------ALPFMGSALAKI 98 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-------------------------------ECSSCEEEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-------------------------------ECCCcceEEEEe
Confidence 4567899863 666667889999998876432 11 122468889998
Q ss_pred c-CeEEEEecCCeEEEEEcCcchhhhhccc---cccccEEEEEEecCCeEEEEeC-------CCeEEEEEcccccccccc
Q 038568 152 Q-GLMYSVSWDRSFKIWNASNYKCLESVNK---AHEDAVNAVVVSDNGVVYTGSA-------DGRIRVWERSVVDHNKER 220 (357)
Q Consensus 152 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~ 220 (357)
+ ..++.++.+ .|.+||..+++....... .....+..++++|+|.+..+.. .+.|..++ .
T Consensus 99 ~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-------- 168 (326)
T 2ghs_A 99 SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-------- 168 (326)
T ss_dssp ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T--------
T ss_pred CCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C--------
Confidence 8 555555544 499999887764322111 1124688999999997555543 23444444 2
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecc--cC-Cc--eeeeeeccCCccceEEEeecCc--eE
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERE--RD-HR--MVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
.+. ..+.........++|+|+++.|+.+ +.++.|.+||+. ++ .. ...+..+.........+.++++ +.
T Consensus 169 ---g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 169 ---GKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp ---TEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred ---CcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 011 1111223346789999999876555 457899999986 44 21 1122222223344566666654 55
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSS 335 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 335 (357)
++...++.|.+|+.. + +.+..+..+...+++++|. +++.
T Consensus 245 va~~~~~~v~~~d~~-g---~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 245 NARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTSC
T ss_pred EEEeCCCEEEEECCC-C---CEEEEEECCCCCcEEEEEecCCCC
Confidence 555556789999984 4 3345555566679999998 7765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-10 Score=95.35 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=157.4
Q ss_pred ecceEEEeeCC-ceEEEeccCCccccceeccccCC------CCce-EEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 38 HNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS------SGSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 38 s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~------~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
.+..+++++.+ .|..+|. ++++.+..+...... ...+ .......+.++.++.++.|..+|..+++..-...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 47788888888 9999999 888877665531100 2233 3344445558889999999999999887654332
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccE---
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAV--- 186 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--- 186 (357)
... ............++.++.++.|..+|.++++.+..+. .. ..+
T Consensus 131 ~~~------------------------------~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~-~~~~~~ 178 (376)
T 3q7m_A 131 VAG------------------------------EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVN-LD-MPSLSL 178 (376)
T ss_dssp CSS------------------------------CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE-CC-C-----
T ss_pred CCC------------------------------ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEe-CC-CCceee
Confidence 211 0011112234778888899999999999998877662 21 111
Q ss_pred ---EEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc--c-----ceeEEEEec--CCCEEEEEec
Q 038568 187 ---NAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR--S-----TVNALALNG--DGSLLFSGGC 254 (357)
Q Consensus 187 ---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~-----~v~~~~~~~--~~~~l~~~~~ 254 (357)
..... .++.++++..++.+..+|..+. +.+....... . .+..+...| .+..++.++.
T Consensus 179 ~~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG----------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~ 247 (376)
T 3q7m_A 179 RGESAPTT-AFGAAVVGGDNGRVSAVLMEQG----------QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY 247 (376)
T ss_dssp CCCCCCEE-ETTEEEECCTTTEEEEEETTTC----------CEEEEEECCC-----------CCCCCCEEETTEEEEECT
T ss_pred cCCCCcEE-ECCEEEEEcCCCEEEEEECCCC----------cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec
Confidence 11222 2567888888999999998722 2222211110 0 000000111 2457888888
Q ss_pred CCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeec-CCcCceEEEEEeeC
Q 038568 255 DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE-GHEKPVKSLVAISS 333 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 333 (357)
++.+..+|.++++...... ......+...++.++.++.++.|..+|..+++ .+.... .....+......
T Consensus 248 ~g~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~-- 317 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKRE-----LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGV---TLWTQSDLLHRLLTSPVLY-- 317 (376)
T ss_dssp TSCEEEEETTTCCEEEEEC-----CCCEEEEEEETTEEEEEETTCCEEEEETTTCC---EEEEECTTTTSCCCCCEEE--
T ss_pred CcEEEEEECCCCcEEeecc-----CCCCCCceEECCEEEEEcCCCeEEEEECCCCc---EEEeecccCCCcccCCEEE--
Confidence 9999999999887543221 12244556667788888889999999999884 232222 112222223222
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. .|+.++.+|.|.++|
T Consensus 318 ~~-------~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 318 NG-------NLVVGDSEGYLHWIN 334 (376)
T ss_dssp TT-------EEEEECTTSEEEEEE
T ss_pred CC-------EEEEEeCCCeEEEEE
Confidence 23 677777888888765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-10 Score=95.65 Aligned_cols=233 Identities=8% Similarity=0.047 Sum_probs=142.8
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCC--eEEEEecCCc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDC--KIRVWKITAS 102 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~--~i~vwd~~~~ 102 (357)
.....|+++ ++++++...+ .|++||. ++++....... ..... ++|++++ |+++..++ .|.+++...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~-~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISV-DDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEET-TTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEEC-CCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 357889998 6766666667 9999999 76555444432 22333 8999986 77777655 7888887655
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh--c
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES--V 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--~ 178 (357)
.....+.... ........+++++| ..|+.+..++.|..||..++..... .
T Consensus 205 ~~~~~~g~~~--------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~ 258 (409)
T 3hrp_A 205 WAPTRIGQLG--------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL 258 (409)
T ss_dssp TCEEEEEECC--------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC
T ss_pred ceeEEeeecc--------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc
Confidence 4322221110 01334567788888 6677777789999999886653221 0
Q ss_pred -ccccccc--EEEEEEecC-Ce-EEEEeCCCeEEEEEccccccccccccceeeeeEeecc---------------cccee
Q 038568 179 -NKAHEDA--VNAVVVSDN-GV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH---------------RSTVN 238 (357)
Q Consensus 179 -~~~~~~~--v~~~~~~~~-~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~ 238 (357)
....... ...++++|+ +. +++-..++.|+.|+... . ...+.++ -....
T Consensus 259 ~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-----------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 259 ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-----------E-CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-----------C-EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-----------C-EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 0111111 138999994 65 55556788999998751 0 1111111 13478
Q ss_pred EEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeec--cC---------CccceEEEeecCc--eEEEecCCCeEEEe
Q 038568 239 ALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEAL--WG---------HTGALLCLINVGD--LLASGSADRTVRIW 304 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~--~~---------~~~~v~~~~~~~~--~l~~~~~dg~i~vw 304 (357)
.++++|+|+++++-. .++.|+.|++.++......... .+ .-.....++++++ ++++-..++.|+.+
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 999999999777777 7899999997666422111110 00 0123456666653 55555666777766
Q ss_pred eC
Q 038568 305 QR 306 (357)
Q Consensus 305 ~~ 306 (357)
++
T Consensus 407 ~~ 408 (409)
T 3hrp_A 407 AV 408 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-10 Score=94.91 Aligned_cols=232 Identities=9% Similarity=0.055 Sum_probs=145.1
Q ss_pred CceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
.....|+|++++ +++...++.|++||..++........ ..... ++|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-------------------------------~~~~~-ia~ 178 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-------------------------------FKGGK-PAV 178 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-------------------------------CCBCB-CEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-------------------------------CCCCc-eeE
Confidence 467899999887 44555568999999987654332221 11122 778
Q ss_pred ec--CeEEEEecCC--eEEEEEcCcchhhhhcc--cc-ccccEEEEEEec-CCeEEEEeCCCeEEEEEcccccccccccc
Q 038568 151 KQ--GLMYSVSWDR--SFKIWNASNYKCLESVN--KA-HEDAVNAVVVSD-NGVVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 151 ~~--~~l~~~~~dg--~i~iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
++ +.|+++..++ .|.+++...+.....+. .. ....+.+++++| ++.|+++..++.|+.||... ..
T Consensus 179 ~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~------~~- 251 (409)
T 3hrp_A 179 TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT------QE- 251 (409)
T ss_dssp CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT------CC-
T ss_pred ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC------CC-
Confidence 88 6777777765 78888876544322210 12 345678899999 67777777789999999861 11
Q ss_pred ceeeeeE--eeccccce--eEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeec--cC---------CccceEEEe
Q 038568 223 RHMLVTT--LVKHRSTV--NALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEAL--WG---------HTGALLCLI 286 (357)
Q Consensus 223 ~~~~~~~--~~~~~~~v--~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~---------~~~~v~~~~ 286 (357)
...... ..+....- ..++|+|+ +.++++-..++.|+.|+..... ....... .+ .-.....++
T Consensus 252 -~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 252 -VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp -EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred -EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 111100 11111222 38999995 5566666678899999986431 1111110 00 012356677
Q ss_pred ecCc--eEEEec-CCCeEEEeeCCCCcceeeeeeecCC---------------cCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 287 NVGD--LLASGS-ADRTVRIWQRGKENCYRCMAFLEGH---------------EKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 287 ~~~~--~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
++++ ++++-. .++.|+.|++.++. +..+.++ -....++++++++. ++++-.
T Consensus 330 ~d~dG~lyvad~~~~~~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-------lyVad~ 398 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-------YWIAEA 398 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-------EEEEES
T ss_pred EeCCCCEEEEeCCCCCEEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-------EEEEEC
Confidence 7655 666666 78999999977663 2222222 24588999999986 888888
Q ss_pred CCCeEEec
Q 038568 349 LNGEIKVW 356 (357)
Q Consensus 349 ~dg~v~~w 356 (357)
.++.|+.+
T Consensus 399 ~n~~Ir~i 406 (409)
T 3hrp_A 399 WGKAIRKY 406 (409)
T ss_dssp TTCEEEEE
T ss_pred CCCeEEEE
Confidence 88888765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-10 Score=101.87 Aligned_cols=237 Identities=11% Similarity=0.008 Sum_probs=143.8
Q ss_pred CccceeEEEEe--cceEEEeeC----C--ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCe-----
Q 038568 28 HHMIISCLAVH--NSLLYAASL----N--EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCK----- 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~----d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~----- 93 (357)
|...+..++|| |++||.++. + .|++||+ ++++.+.... +...+..++|+||. |+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl-~tg~~~~~~~----~~~~~~~~~wspD~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV-ADGKPLADEL----KWVKFSGLAWLGNDALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEET-TTCCEEEEEE----EEEESCCCEESTTSEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC-CCCCCCCccC----CCceeccEEEECCCEEEEEEecCcccccc
Confidence 44578899999 888887653 2 6999999 8877654311 22234578999986 766665543
Q ss_pred ---------EEEEecCCcccee-eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 94 ---------IRVWKITASRQHQ-LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 94 ---------i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|.+|++.++.... .+... ..+...+..+.|+| ++|+..+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~---------------------------~~~~~~~~~~~~SpDG~~l~~~~~~ 288 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT---------------------------PELPKRGHGASVSSDGRWVVITSSE 288 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC---------------------------TTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc---------------------------CCCCeEEEEEEECCCCCEEEEEEEc
Confidence 8888887654211 11111 02334578899999 667766654
Q ss_pred C-----eEEEEEcCcc--hhhhhccccccccEEEEEEecCC-eEEEEeC----CCeEEEEEccccccccccccceeeeeE
Q 038568 162 R-----SFKIWNASNY--KCLESVNKAHEDAVNAVVVSDNG-VVYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTT 229 (357)
Q Consensus 162 g-----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (357)
+ .|.+||+.++ ++...+ ..+........ +|++ .|+..+. ++.|.+||+. ... ......
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~------~~~--~~~~~l 358 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTAL-IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLS------GST--PRFDTV 358 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEE-ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECS------SSS--CEEEEE
T ss_pred cCCCcceEEEEECCCCCCcccEEe-cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCC------CCc--cccEEE
Confidence 3 8999999876 313444 23333344443 3666 5655554 4569999986 110 122223
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecc-cCCceeeeeeccC-CccceEEEeecCc--eEE----EecCCCeE
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHRMVFAEALWG-HTGALLCLINVGD--LLA----SGSADRTV 301 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~----~~~~dg~i 301 (357)
+..+...+..++++ ++.++++...|+..++|.+. ++.. ...+.. +...+..++++++ .|+ +....+.|
T Consensus 359 ~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~---~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 359 VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP---AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE---EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc---eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 33444556677887 56678888889987777665 2332 222322 3566777777654 333 23345899
Q ss_pred EEeeCCCCc
Q 038568 302 RIWQRGKEN 310 (357)
Q Consensus 302 ~vw~~~~~~ 310 (357)
++||+.+++
T Consensus 435 ~~~d~~tg~ 443 (741)
T 1yr2_A 435 LALDPATAK 443 (741)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 999998763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-10 Score=91.86 Aligned_cols=269 Identities=8% Similarity=-0.033 Sum_probs=161.4
Q ss_pred cceEEEeeC-----C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecC
Q 038568 39 NSLLYAASL-----N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKIT 100 (357)
Q Consensus 39 ~~~l~t~~~-----d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~ 100 (357)
++.+++... + .|.+.|. .+++.+..+.. ...+ . ++++|++ ++.+. .++.|.+||..
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~v---G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDG---GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEE---CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEEC---CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 555555543 6 9999999 99999998885 4445 4 9999997 55554 36789999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLE 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~ 176 (357)
+.+....+........ .....-..+.++| ++++.+.. ++.|.++|+.+++.+.
T Consensus 118 t~~v~~~I~v~~g~r~-----------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 118 TLLPTADIELPDAPRF-----------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp TCCEEEEEEETTCCCC-----------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred CCeEEEEEECCCcccc-----------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9876665543210000 0012334678888 67777654 6899999999999888
Q ss_pred hccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEe-cCCCEEEEE
Q 038568 177 SVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALN-GDGSLLFSG 252 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~ 252 (357)
++.. ... .. ..|.+ .+++.+.||.+.+.++.... +........+.....++. ...|. ++|++++ .
T Consensus 175 tI~v--~g~--~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g-----~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-v 243 (386)
T 3sjl_D 175 MLDV--PDC--YH-IFPTAPDTFFMHCRDGSLAKVAFGTEG-----TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-P 243 (386)
T ss_dssp EEEC--CSE--EE-EEEEETTEEEEEETTSCEEEEECCSSS-----CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-E
T ss_pred EEEC--CCc--ce-eecCCCceeEEECCCCCEEEEECCCCC-----eEEEeecceeccccccccccceeEcCCCcEEE-E
Confidence 8722 111 12 23433 57788889999999986211 100000001111112222 24665 5776555 5
Q ss_pred ecCCeEEEEecccCCceeeeeecc------------CCccceEEEeecCceEEEecC----------CCeEEEeeCCCCc
Q 038568 253 GCDRWIVVWERERDHRMVFAEALW------------GHTGALLCLINVGDLLASGSA----------DRTVRIWQRGKEN 310 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~ 310 (357)
+.+|+|++.|+.+.... ...... ........+...++.++.... .+.|.+.|+.+.+
T Consensus 244 s~~g~V~v~d~~~~~~~-v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp BTTSEEEEEECTTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred eCCCEEEEEECCCCcce-eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 56899999999765421 111110 111123444444444443321 3579999999974
Q ss_pred ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+..+.. ...+.+|.+++|++. .++++...++.|.++|
T Consensus 323 ---v~~~i~v-g~~~~~lavs~D~~~-----~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 323 ---RLAKFEM-GHEIDSINVSQDEKP-----LLYALSTGDKTLYIHD 360 (386)
T ss_dssp ---EEEEEEE-EEEECEEEECSSSSC-----EEEEEETTTTEEEEEE
T ss_pred ---EEEEEEC-CCCcceEEECCCCCe-----EEEEEcCCCCeEEEEE
Confidence 4444432 236889999999740 1344456789998876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-10 Score=90.73 Aligned_cols=232 Identities=9% Similarity=0.047 Sum_probs=137.8
Q ss_pred ccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
.+..+.. .........|+|++ +++...++.|..|+.. ++. ..+.
T Consensus 36 ~~~~l~~---~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~---------------------------- 82 (305)
T 3dr2_A 36 RLLTLYD---QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL---------------------------- 82 (305)
T ss_dssp CCEEEEC---CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE----------------------------
T ss_pred ceEEEec---CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe----------------------------
Confidence 3444443 55667889999875 6677778999999874 332 2221
Q ss_pred cccccccEEEEEEec-CeEEEEe-cCCeEEEEEcCcchhhhhccc----cccccEEEEEEecCCeEEE-----EeC----
Q 038568 138 WLEHWDAVSDLVVKQ-GLMYSVS-WDRSFKIWNASNYKCLESVNK----AHEDAVNAVVVSDNGVVYT-----GSA---- 202 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~-----~~~---- 202 (357)
.+...+..+++++ ..++++. .++.|..|+.. ++. ..+.. .....+..+++.++|.+.. |..
T Consensus 83 --~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~ 158 (305)
T 3dr2_A 83 --DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ 158 (305)
T ss_dssp --ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGG
T ss_pred --CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccc
Confidence 3345678899998 4455554 45789999975 442 22211 1123467899999996555 332
Q ss_pred ---------CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC------CeEEEEecccCC
Q 038568 203 ---------DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD------RWIVVWERERDH 267 (357)
Q Consensus 203 ---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~ 267 (357)
.+.|..+|.. . .+... +. .......++|+|+++.|+.+... +.|++|++....
T Consensus 159 ~~~~~~~~~~~~v~~~d~~------~----g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 159 GCPADPELAHHSVYRLPPD------G----SPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp SCCCCCSSSCEEEEEECSS------S----CCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred ccccccccCCCeEEEEcCC------C----CcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 2456667654 1 11111 11 23456789999999988777665 789999987543
Q ss_pred ceeeeeec-cCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE
Q 038568 268 RMVFAEAL-WGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG 345 (357)
Q Consensus 268 ~~~~~~~~-~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~ 345 (357)
+.....+ .........+.++++ .|.++..+| |.+|+.. + +.+..+..+. .+.+++|.++++ .|.
T Consensus 227 -l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~-g---~~~~~~~~~~-~~~~~~f~~d~~-------~L~ 292 (305)
T 3dr2_A 227 -LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSD-G---QLLGHIPTPG-TASNCTFDQAQQ-------RLF 292 (305)
T ss_dssp -EEEEEEEECCSSSCCCSEEECTTSCEEECCSSE-EEEECTT-S---CEEEEEECSS-CCCEEEECTTSC-------EEE
T ss_pred -ccCCeEEEECCCCCCCeEEECCCCCEEEecCCc-EEEECCC-C---CEEEEEECCC-ceeEEEEeCCCC-------EEE
Confidence 2111111 111222233445444 355555554 9999985 3 3344444444 588999998876 666
Q ss_pred EcCCCCeEEe
Q 038568 346 SGSLNGEIKV 355 (357)
Q Consensus 346 s~~~dg~v~~ 355 (357)
.++.++..++
T Consensus 293 it~~~~l~~~ 302 (305)
T 3dr2_A 293 ITGGPCLWML 302 (305)
T ss_dssp EEETTEEEEE
T ss_pred EEcCCeEEEE
Confidence 6655665554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=95.76 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=115.6
Q ss_pred EEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc
Q 038568 145 VSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
+.++...+ ..+..++.++.|..+|.. ++.+..+ ......+.++...+++.+..++ +.|..+| . .
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~----------~ 203 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-P----------D 203 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-T----------T
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-C----------C
Confidence 44455564 678888888999999988 7766655 3344556777777788777777 8888888 4 1
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-CceEEEecCCCeEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-GDLLASGSADRTVR 302 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~ 302 (357)
.............+.++...+++. |..++.++.|..+|.. +....... .....+..+..+ ...|..++.+|.|.
T Consensus 204 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~---~~~~~~~~~~~~~~g~l~v~t~~ggl~ 278 (330)
T 3hxj_A 204 GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK---TGKRIESSPVIGNTDTIYFGSYDGHLY 278 (330)
T ss_dssp SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEE---CSSCCCSCCEECTTSCEEEECTTCEEE
T ss_pred CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEee---CCCCccccceEcCCCeEEEecCCCCEE
Confidence 222333333445677888888775 5556677888888753 44332222 122222333444 44788888898899
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+|. ++ +.+.........+.++...+++. |..++.+|.+++.
T Consensus 279 ~~d~-~g---~~~~~~~~~~~~~~~~~~d~~g~--------l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 279 AINP-DG---TEKWNFETGSWIIATPVIDENGT--------IYFGTRNGKFYAL 320 (330)
T ss_dssp EECT-TS---CEEEEEECSSCCCSCCEECTTCC--------EEEECTTSCEEEE
T ss_pred EECC-CC---cEEEEEEcCCccccceEEcCCCE--------EEEEcCCCeEEEE
Confidence 9996 44 22333333455677777777775 5667789988763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-09 Score=87.65 Aligned_cols=267 Identities=7% Similarity=-0.048 Sum_probs=158.3
Q ss_pred cceEEEeeC--C----ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecC
Q 038568 39 NSLLYAASL--N----EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKIT 100 (357)
Q Consensus 39 ~~~l~t~~~--d----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~ 100 (357)
+++++++.. . .|.++|. .+++.+..+.. ...+ .++++||+ ++.+. .++.|.+||..
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~---g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNG---GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecC---CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 555555443 2 5799999 88888877764 3334 99999997 55554 36789999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLE 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~ 176 (357)
+.+....+...... +. .+...-..+.++| ++|+.+.. ++.|.++| .+++.+.
T Consensus 106 t~~~~~~i~~~~~~---------------------~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 106 TFLPIADIELPDAP---------------------RF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred CCcEEEEEECCCcc---------------------cc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 77655544321000 00 0012234788988 77777764 57899999 9998877
Q ss_pred h-ccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc-eeEEEEecCCCEEEEE
Q 038568 177 S-VNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST-VNALALNGDGSLLFSG 252 (357)
Q Consensus 177 ~-~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~ 252 (357)
. + . ... ++.+.|++ .+++.+.||.+.++|. ..+.... ......+ ....+ .....+.+++..++..
T Consensus 162 ~~i-~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~ 230 (373)
T 2mad_H 162 QLL-S-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGAML-TAAQNLLTQPAQANKSGRIVWP 230 (373)
T ss_pred EEc-C-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccccc-cCCcceeecceeEecCCEEEEE
Confidence 7 6 2 222 24445555 4677788999999997 3221100 0000001 11122 2335567766555544
Q ss_pred ecCCeEEEEecccCCceeeeeeccC----------CccceEEEeecC--ceEEEecC----------CCeEEEeeCCCCc
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWG----------HTGALLCLINVG--DLLASGSA----------DRTVRIWQRGKEN 310 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~--~~l~~~~~----------dg~i~vw~~~~~~ 310 (357)
+.++.+.+.|+...... ....+.- .......+.+++ +.+++... ++.|.++|..+.
T Consensus 231 ~~~~~v~vid~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~- 308 (373)
T 2mad_H 231 VYSGKILQADISAAGAT-NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG- 308 (373)
T ss_pred cCCceEEEEeccCCcce-EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-
Confidence 57889999999754321 1111110 011122234444 44444332 468999999987
Q ss_pred ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 311 CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 311 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
+.+..+.. .....+++|+||++ .+++++. .++.|.+||
T Consensus 309 --~vv~~i~~-g~~p~~i~~s~Dg~------~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 309 --QTSSQISL-GHDVDAISVAQDGG------PDLYALSAGTEVLHIYD 347 (373)
T ss_pred --EEEEEEEC-CCCcCeEEECCCCC------eEEEEEcCCCCeEEEEE
Confidence 44555543 33578999999986 3466665 589999886
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-09 Score=88.63 Aligned_cols=267 Identities=12% Similarity=0.066 Sum_probs=161.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccC----CC
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLS----SS 72 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~----~~ 72 (357)
+..+.+.+.++.. -..+ . ++++ |++++++. .+ .|.+||. .+.+.+.++....+ ..
T Consensus 65 D~~t~~v~~~I~v-----G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~-~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 65 DGEAGRVIGMIDG-----GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp ETTTTEEEEEEEE-----CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBS
T ss_pred ECCCCeEEEEEEC-----CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC-CCCeEEEEEECCCccccccC
Confidence 3345666666664 2233 3 8888 88887775 35 8999999 88888888753110 01
Q ss_pred CceEEEEEecCc--eEEeec--CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQ--DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.....++|+||+ ++.+.. ++.|.++|+.+.+....+... + . ..
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----------------------------g----~-~~ 183 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----------------------------D----C-YH 183 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------------------------S----E-EE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----------------------------C----c-ce
Confidence 245679999997 555543 689999999998776655321 1 1 11
Q ss_pred EEec--CeEEEEecCCeEEEEEcCc-chhhhhc---cccccccEE-EEEEe-cCCeEEEEeCCCeEEEEEcccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASN-YKCLESV---NKAHEDAVN-AVVVS-DNGVVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~---~~~~~~~v~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
.+.. ..+++.+.||.+.+.++.+ ++..... ......++. ...|. ++|+++..+.+|.|++.|+....
T Consensus 184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~----- 258 (386)
T 3sjl_D 184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD----- 258 (386)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS-----
T ss_pred eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCc-----
Confidence 1211 6677888899999999876 4442211 011112221 23554 67876667778999999986211
Q ss_pred ccceeeeeEee----------ccccceeEEEEecCCCEEEEEec----------CCeEEEEecccCCceeeeeeccCCcc
Q 038568 221 KSRHMLVTTLV----------KHRSTVNALALNGDGSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGHTG 280 (357)
Q Consensus 221 ~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~ 280 (357)
......+. -.......++++++++.++.... .++|.++|+.+.+....+.. ++
T Consensus 259 ---~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--g~-- 331 (386)
T 3sjl_D 259 ---AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GH-- 331 (386)
T ss_dssp ---CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EE--
T ss_pred ---ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--CC--
Confidence 11111111 01123345778999988887653 25799999999886544332 22
Q ss_pred ceEEEeecCc---eEEE-ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 281 ALLCLINVGD---LLAS-GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 281 ~v~~~~~~~~---~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+..+.++++ +|++ ...++.|.++|..++ +.+..+..- +.-+.|.+++|
T Consensus 332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~---k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG---EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EECEEEECSSSSCEEEEEETTTTEEEEEETTTC---CEEEEECCC-CSSCCEEEECC
T ss_pred CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC---cEEEEecCC-CCCceeEECCc
Confidence 3445555443 5555 456899999999998 444444432 22344555555
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-10 Score=94.86 Aligned_cols=263 Identities=11% Similarity=0.092 Sum_probs=152.8
Q ss_pred cceeEEEEe--cceEEEee--CC-ceEEEeccCCccccceecc----ccCCCCceEEEEEecCc-eEEeec------CCe
Q 038568 30 MIISCLAVH--NSLLYAAS--LN-EINVFDLISDYSHVDTFSN----DLSSSGSVKSITFHITK-IFTAHQ------DCK 93 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~--~d-~i~iw~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~-l~~~~~------d~~ 93 (357)
.....++++ |+++++.. .+ .++||.+ ++++ +..+.. ...+...+..+++.+++ |+.+.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~-~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAEL-TQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEE-ETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEE-CCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 568899998 77777754 23 5788888 4443 222211 11256789999999977 555442 478
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEe---cCCeEEEE
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVS---WDRSFKIW 167 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~---~dg~i~iw 167 (357)
|.+||+.+++....+...... ..+...+..+++++ ..+ ++.. .++.|.+|
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPI------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTT------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEEEECCCCeEEEEEECChhh------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 999999887654443221000 02234567888886 444 4444 57899999
Q ss_pred EcCcchhhhhccccccccEE-EEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 168 NASNYKCLESVNKAHEDAVN-AVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
|+.+++....+ ..|..... ...+.+++. +.+...++.++.|. ..+..|+|+|+
T Consensus 151 d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------------------~~~~gia~s~d 205 (343)
T 2qe8_A 151 DLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------------------LGVNGIVLDAE 205 (343)
T ss_dssp ETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCC------------------------CCEEEEEECTT
T ss_pred ECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceecee------------------------cccceeEeccC
Confidence 99887655444 22211100 023344553 55555666654432 13567999999
Q ss_pred CCEEEEEecCC-eEEEEecccCC--cee---eee--eccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeee
Q 038568 246 GSLLFSGGCDR-WIVVWERERDH--RMV---FAE--ALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 246 ~~~l~~~~~dg-~i~vwd~~~~~--~~~---~~~--~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
++.|+.+..++ .+..++..... ... ... ...++......++++ +.++++...++.|.+||..+++ ...+
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~ 284 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLL 284 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEE
Confidence 99888887766 55555432110 000 000 011222233334454 4477888888999999985552 2222
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
... .+...++++++.+++. ++++.+..+.
T Consensus 285 ~~~-~~~~~p~~va~~~~g~-------l~v~~~~~~~ 313 (343)
T 2qe8_A 285 VTD-EKLSWTDSFNFGSDGY-------LYFDCNQLHH 313 (343)
T ss_dssp EEC-GGGSCEEEEEECTTSC-------EEEEECCGGG
T ss_pred EEC-CceecCCeeEECCCCc-------EEEEeCcccc
Confidence 221 1345689999999887 6766654443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-08 Score=84.16 Aligned_cols=244 Identities=8% Similarity=-0.025 Sum_probs=148.1
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccc-cC---CCC
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSND-LS---SSG 73 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~-~~---~~~ 73 (357)
..+.+.+.++.. -..+ .++++ |++|+++. .+ .|.+||. .+.+.+..+... .. +..
T Consensus 54 ~~t~~~~~~i~~-----g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~-~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 54 AGSGSILGHVNG-----GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred CCCCeEEEEecC-----CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC-CCCcEEEEEECCCccccccCC
Confidence 345566666653 2233 88888 88888875 25 8999999 887777766531 00 013
Q ss_pred ceEEEEEecCc--eEEeec--CCeEEEEecCCccceee-eeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 74 SVKSITFHITK--IFTAHQ--DCKIRVWKITASRQHQL-VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....++|+|++ |+.+.. ++.|.++| .+++.... +.. ... +
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-------------------------------~~~---~ 170 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-------------------------------PTC---Y 170 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-------------------------------Cce---E
Confidence 34589999997 666653 57899999 88765443 221 111 2
Q ss_pred EEec---CeEEEEecCCeEEEEEcCcchhhhhcc----cccccc-EEEEEEecCC-eEEEEeCCCeEEEEEccccccccc
Q 038568 149 VVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN----KAHEDA-VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 149 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~-v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
.+.+ ..+++.+.||.+.++|. +++...... .....+ .....+.+++ .++..+..+.+.+.|+....
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~---- 245 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG---- 245 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCc----
Confidence 2223 56677788999999999 776553220 011112 1223455554 44444467899999985211
Q ss_pred cccceeeeeEeec----------cccceeEEEEecCCCEEEEEec----------CCeEEEEecccCCceeeeeeccCCc
Q 038568 220 RKSRHMLVTTLVK----------HRSTVNALALNGDGSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGHT 279 (357)
Q Consensus 220 ~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 279 (357)
......+.. .......+.++|+++.++++.. ++.|.++|+.+.+....+. .++
T Consensus 246 ----~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~- 318 (373)
T 2mad_H 246 ----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGH- 318 (373)
T ss_pred ----ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCC-
Confidence 011111110 1122344788999988887653 3579999999887544332 122
Q ss_pred cceEEEeecC--c-eEEEec-CCCeEEEeeCCCCc
Q 038568 280 GALLCLINVG--D-LLASGS-ADRTVRIWQRGKEN 310 (357)
Q Consensus 280 ~~v~~~~~~~--~-~l~~~~-~dg~i~vw~~~~~~ 310 (357)
....+.+++ + .++++. .++.|.++|..+++
T Consensus 319 -~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 319 -DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 345555654 4 677776 58999999999873
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=96.10 Aligned_cols=257 Identities=15% Similarity=0.110 Sum_probs=155.8
Q ss_pred ceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceee
Q 038568 31 IISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 31 ~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
...+.... +..|..++.+ .|..||. +++....+.. ....+.++...+++ +..++.+ |..+|. +++....
T Consensus 21 ~~~~~~~d~~g~l~v~t~~~~l~~~d~--~g~~~~~~~~---~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 21 IDSSPILAKNGTIYLGSSNKNLYAINT--DGSVKWFFKS---GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp ECCCCEECTTSCEECSSTTTTTEEECT--TSCEEESSCG---GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGG
T ss_pred cccCceEccCCeEEEEcCCCEEEEECC--CCcEEEEEec---CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEE
Confidence 34455564 6678888878 8999993 4455444443 44456777777666 6666655 888886 4433222
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
... ..............+..++.++.|..+|.. ++..... ......+.
T Consensus 93 ~~~------------------------------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~ 140 (330)
T 3hxj_A 93 FDT------------------------------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYA 140 (330)
T ss_dssp SCC-----------------------------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCS
T ss_pred EEC------------------------------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceee
Confidence 111 011111122225778888889999999988 6666555 33444566
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
++...+++.+..++.++.|..+|.. .............+.++...+++.++ .++ +.|..+| .+++
T Consensus 141 ~~~~~~~g~l~vgt~~~~l~~~d~~-----------g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 141 TPIVSEDGTIYVGSNDNYLYAINPD-----------GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp CCEECTTSCEEEECTTSEEEEECTT-----------SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred eeEEcCCCEEEEEcCCCEEEEECCC-----------CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 6777778888889989999999874 12222333334556777777777644 444 7799999 5555
Q ss_pred ceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 268 RMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
... ........+.++..+++ .|..++.++.|..++.. + ..+.........+.++...+++ .|..
T Consensus 206 ~~~---~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~g--------~l~v 270 (330)
T 3hxj_A 206 EKW---NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-G---TEKWRFKTGKRIESSPVIGNTD--------TIYF 270 (330)
T ss_dssp EEE---EECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-S---CEEEEEECSSCCCSCCEECTTS--------CEEE
T ss_pred EEE---EEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-C---CEeEEeeCCCCccccceEcCCC--------eEEE
Confidence 332 22223345666667766 77778888888888753 3 2223333333334455555555 3556
Q ss_pred cCCCCeEEecC
Q 038568 347 GSLNGEIKVWD 357 (357)
Q Consensus 347 ~~~dg~v~~wd 357 (357)
++.+|.|..+|
T Consensus 271 ~t~~ggl~~~d 281 (330)
T 3hxj_A 271 GSYDGHLYAIN 281 (330)
T ss_dssp ECTTCEEEEEC
T ss_pred ecCCCCEEEEC
Confidence 66777777664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-09 Score=97.72 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=117.4
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCC-------Cce-EEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-------GSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-------~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+..+++++.+ .|..+|. .+++.+-.+....... ..+ ..++...+.++.++.|+.|..+|..+++..-...
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 6777788888 9999999 8888887775311000 001 1234445568889999999999999998765543
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe------cCCeEEEEEcCcchhhhhccccc-
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS------WDRSFKIWNASNYKCLESVNKAH- 182 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~- 182 (357)
....... .+.....++ .....++.++ .+|.|..||.++++.+..+....
T Consensus 149 ~~~~~~~--------------------~~~~~~sP~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 204 (689)
T 1yiq_A 149 TRADHKR--------------------SYTITGAPR----VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204 (689)
T ss_dssp CCSCTTS--------------------CCBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred CcCCCCC--------------------CccccCCcE----EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence 3100000 000001111 1234455544 36899999999998876652110
Q ss_pred -----------------------------cccEEEEEEecCC-eEEEEeCCCe-------------------EEEEEccc
Q 038568 183 -----------------------------EDAVNAVVVSDNG-VVYTGSADGR-------------------IRVWERSV 213 (357)
Q Consensus 183 -----------------------------~~~v~~~~~~~~~-~l~~~~~d~~-------------------i~i~d~~~ 213 (357)
......++++|+. +++.+..++. |..+|.++
T Consensus 205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 0111256788765 6777777653 89999882
Q ss_pred cccccccccceeeeeEeec--cc-------cceeEEEEecCCC---EEEEEecCCeEEEEecccCCce
Q 038568 214 VDHNKERKSRHMLVTTLVK--HR-------STVNALALNGDGS---LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.+.+-.+.. |. .++.......+|+ .++.++.+|.++++|.++++.+
T Consensus 285 ----------G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 285 ----------GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp ----------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ----------CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 223322221 21 1222223333565 7889999999999999998864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-08 Score=83.52 Aligned_cols=212 Identities=8% Similarity=0.023 Sum_probs=129.4
Q ss_pred ceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 31 IISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 31 ~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
...+.+|+ +.++++...+ .|..||. ++++. ..+. ....+.+++|.+++ ++.++.+ .|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~~----~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHL-ASGRK-TVHA----LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEET-TTTEE-EEEE----CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEEC-CCCcE-EEEE----CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE
Confidence 34567888 4566666667 9999998 66543 3343 45689999999987 6556544 4999998776532
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEec-------CCeEEEEEcCcchhhhh
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSW-------DRSFKIWNASNYKCLES 177 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~ 177 (357)
. +..... ......+.++++++ ..++.++. .+.|..++ +++. ..
T Consensus 123 ~-~~~~~~-------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~ 173 (326)
T 2ghs_A 123 L-HAELES-------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TK 173 (326)
T ss_dssp E-EECSST-------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EE
T ss_pred E-EeeCCC-------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EE
Confidence 2 211100 01124678899998 44444442 24555555 3432 22
Q ss_pred ccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEcc--cc-ccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 178 VNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERS--VV-DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
+ .........++|+|++. + ++...++.|.+||+. .. .. ........+......+..++++++|+++++.
T Consensus 174 ~-~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-----~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 174 L-FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT-----GKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp E-EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS-----SCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred e-eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcc-----cCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 2 22334567899999993 4 444567899999974 11 00 0011222222234556789999999877777
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
..++.|.+||.. ++.. ..+..+...+.+++|.
T Consensus 248 ~~~~~v~~~d~~-g~~~---~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 248 WGEGAVDRYDTD-GNHI---ARYEVPGKQTTCPAFI 279 (326)
T ss_dssp ETTTEEEEECTT-CCEE---EEEECSCSBEEEEEEE
T ss_pred eCCCEEEEECCC-CCEE---EEEECCCCCcEEEEEe
Confidence 677889999984 5432 2333344568888886
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-09 Score=93.49 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=138.6
Q ss_pred CccceeEEEEe--cceEE-----EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCC-----
Q 038568 28 HHMIISCLAVH--NSLLY-----AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDC----- 92 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~-----t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~----- 92 (357)
|...+..++|| |++|| .|+.. .|++||+ ++++.+.... .......++|+ |+ |+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~~~----~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV-ESKQPLETPL----KDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET-TTCSEEEEEE----EEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC-CCCCCCcccc----CCceeccEEEe-CCCEEEEEEecCccccc
Confidence 66688899999 88888 34455 8999999 8877544311 11123567899 76 77777664
Q ss_pred --------eEEEEecCCcccee-eeeecCccccceeeeecCCCeEEEeccccccccc-ccccEEEEEEec--CeEEE-Ee
Q 038568 93 --------KIRVWKITASRQHQ-LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE-HWDAVSDLVVKQ--GLMYS-VS 159 (357)
Q Consensus 93 --------~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~l~~-~~ 159 (357)
.|.+|++.++.... .+...+ . |......+.++| ++|+. .+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~---------------------------~~~~~~~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAI---------------------------PAQHHRYVGATVTEDDRFLLISAA 253 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCS---------------------------GGGCCSEEEEEECTTSCEEEEEEE
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecC---------------------------CCCCeEEEEEEEcCCCCEEEEEEc
Confidence 38889887664321 121111 2 344567888999 55543 33
Q ss_pred c---CCeEEEEEcCcch-hhhhccccccccEEEEEEecCC-e-EEEEeCC---CeEEEEEccccccccccccceeeeeEe
Q 038568 160 W---DRSFKIWNASNYK-CLESVNKAHEDAVNAVVVSDNG-V-VYTGSAD---GRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 160 ~---dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
. ++.|.++|+.++. ....+ ..+....... +++++ . ++....+ +.|..+|+.. .. ......+
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~l-~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~------~~--~~~~~~l 323 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLTV-QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN------PG--PAHWRDL 323 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEEE-ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS------CC--GGGCEEE
T ss_pred cCCCCcEEEEEECCCCCCceEEE-eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC------CC--ccccEEE
Confidence 2 3589999997764 33444 3344444444 44544 4 3444333 6788898872 11 1012234
Q ss_pred eccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC----CeE
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD----RTV 301 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d----g~i 301 (357)
..+...+. .|+++++.|+.... ++ .|++||+..+.. ..+ .......+..+.++++ .++....+ +.+
T Consensus 324 ~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l--~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 324 IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REV--ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEE--CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEe--ecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 44555554 88998887776665 43 689999874431 111 1223445666666543 33333222 789
Q ss_pred EEeeCCCCc
Q 038568 302 RIWQRGKEN 310 (357)
Q Consensus 302 ~vw~~~~~~ 310 (357)
..||+.+++
T Consensus 399 ~~~d~~~g~ 407 (693)
T 3iuj_A 399 YRFEPKSGA 407 (693)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCe
Confidence 999987763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-09 Score=88.31 Aligned_cols=259 Identities=9% Similarity=-0.043 Sum_probs=157.7
Q ss_pred CceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecCCccceeeeeecCccc
Q 038568 48 NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 48 d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
+.|.++|. .+.+.+..+.. -..+ .++++||+ ++.+. .++.|.++|..+.+....+.......
T Consensus 99 ~~VsVID~-~t~~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r 172 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR 172 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CeEEEEEC-CCCEEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc
Confidence 48999999 99999999886 4455 89999997 55554 46789999999987766554310000
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
. ........+.++| ++++.+.. ++.|.+.|+.+++.+.++... .. ...
T Consensus 173 ---------------------~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--g~---~~~ 224 (426)
T 3c75_H 173 ---------------------F--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--DC---YHI 224 (426)
T ss_dssp ---------------------C--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE---EEE
T ss_pred ---------------------c--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--Cc---eee
Confidence 0 0011234567888 67777764 578999999999988887321 11 233
Q ss_pred ecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce-eEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 192 SDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV-NALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 192 ~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
.|++ .+++.+.||.+.+.+....+. .......+.....++ ..+.|.+++..++.....+.|.+.|+.....
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v------~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGET------KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCC------EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcE------EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 3443 466777888888888741110 000001111111121 2356788888877778889999999865432
Q ss_pred eeeeeecc------------CCccceEEEeecCceEEEec----------CCCeEEEeeCCCCcceeeeeeecCCcCceE
Q 038568 269 MVFAEALW------------GHTGALLCLINVGDLLASGS----------ADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326 (357)
Q Consensus 269 ~~~~~~~~------------~~~~~v~~~~~~~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~ 326 (357)
. ....+. ........+..+++.+++.. .++.|.+.|..+. +.+..+... ....
T Consensus 299 ~-v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~ 373 (426)
T 3c75_H 299 T-FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEID 373 (426)
T ss_dssp E-ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEEC
T ss_pred E-EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcC
Confidence 1 111100 01111134444445444432 1457999999997 444444322 2578
Q ss_pred EEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 327 SLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
++.|+|+++ .++++.. .++.|.++|
T Consensus 374 gia~spDg~------~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 374 SINVSQDAE------PLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EEEECCSSS------CEEEEEETTTTEEEEEE
T ss_pred eEEEccCCC------EEEEEEcCCCCeEEEEE
Confidence 999999974 1454444 689998876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-09 Score=95.72 Aligned_cols=272 Identities=10% Similarity=0.096 Sum_probs=161.1
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCC--------CceEEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS--------GSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~--------~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+..|++++.+ .|..+|. .+++.+-.+....... .....+++..+.++.++.|+.|..+|..+++..-...
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 6677777777 9999999 8888887766411000 0112344555668889999999999999998765544
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEec------CCeEEEEEcCcchhhhhccccc
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSW------DRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
...... ....+. ........++.++. +|.|+.+|.++++.+..+....
T Consensus 156 ~~~~~~-------------------------~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 210 (677)
T 1kb0_A 156 TFEGQK-------------------------GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP 210 (677)
T ss_dssp TTTTCC-------------------------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred CCcCcC-------------------------cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCC
Confidence 220000 000000 01112355555553 6899999999998876652111
Q ss_pred c-------------------------------ccEEEEEEecCC-eEEEEeCCC-------------------eEEEEEc
Q 038568 183 E-------------------------------DAVNAVVVSDNG-VVYTGSADG-------------------RIRVWER 211 (357)
Q Consensus 183 ~-------------------------------~~v~~~~~~~~~-~l~~~~~d~-------------------~i~i~d~ 211 (357)
. .....++++|++ .++.+..++ .|..+|.
T Consensus 211 ~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~ 290 (677)
T 1kb0_A 211 GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP 290 (677)
T ss_dssp CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence 0 111356778766 666666553 4888888
Q ss_pred cccccccccccceeeeeEee--ccc-------cceeEEEEecCC---CEEEEEecCCeEEEEecccCCceeeeeeccC--
Q 038568 212 SVVDHNKERKSRHMLVTTLV--KHR-------STVNALALNGDG---SLLFSGGCDRWIVVWERERDHRMVFAEALWG-- 277 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~--~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-- 277 (357)
++ .+.+-.+. .|. ....-+....+| ..++.++.+|.++++|..+++.+........
T Consensus 291 ~T----------G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 291 DT----------GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TT----------CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred CC----------CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 72 22222222 121 122223334477 6899999999999999999886543321100
Q ss_pred ------Cccce------------------------EEEeecCc--eEEEecC----------------------------
Q 038568 278 ------HTGAL------------------------LCLINVGD--LLASGSA---------------------------- 297 (357)
Q Consensus 278 ------~~~~v------------------------~~~~~~~~--~l~~~~~---------------------------- 297 (357)
...++ ..++++++ ++++...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 00000 13455554 5544322
Q ss_pred ---------------CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 298 ---------------DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 298 ---------------dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.|..||+.+++ .+-... +..++.+..+...+. +++.++.||.+++||
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~---~~W~~~-~~~~~~~g~~~~~g~-------~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQK---AAWSVE-HVSPWNGGTLTTAGN-------VVFQGTADGRLVAYH 504 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTE---EEEEEE-ESSSCCCCEEEETTT-------EEEEECTTSEEEEEE
T ss_pred ccccccccccCCCCCccEEEEEeCCCCc---EEeecC-CCCCCcCcceEeCCC-------EEEEECCCCcEEEEE
Confidence 2789999999883 333332 334455556677776 788889999999986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-08 Score=91.18 Aligned_cols=291 Identities=11% Similarity=0.081 Sum_probs=159.8
Q ss_pred EEEecceEEEeeCC-ceEEEeccCCccccceeccc-cC-CCCceE-EEEEecCceEEee------cCCeEEEEecCCccc
Q 038568 35 LAVHNSLLYAASLN-EINVFDLISDYSHVDTFSND-LS-SSGSVK-SITFHITKIFTAH------QDCKIRVWKITASRQ 104 (357)
Q Consensus 35 ~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~-~~-~~~~v~-~l~~~~~~l~~~~------~d~~i~vwd~~~~~~ 104 (357)
+++.+..+++++.| .|..+|. .+++.+-.+... .. ....+. +-....+.++.++ .++.|..||..+++.
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDA-KTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEET-TTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred cEEECCEEEEEccCCEEEEEEC-CCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 34457788888888 9999999 898888776641 00 001111 1111233455554 378999999999987
Q ss_pred eeeeeecCccccceeeeecCCCe-EEEecccccccc---cccccEEEEEEec--CeEEEEecCCe---------------
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNY-VTVRRHKKRLWL---EHWDAVSDLVVKQ--GLMYSVSWDRS--------------- 163 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~v~~~~~~~--~~l~~~~~dg~--------------- 163 (357)
.-.....+....... ..... ..........|. ++...-..+++++ ++++.++.++.
T Consensus 196 ~W~~~~~~~~p~~~~---~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPP---EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp EEEEESSCCCTTSCC---CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred EEEecccCCCccccc---ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 655543221100000 00000 000000000000 1112223567777 78888877763
Q ss_pred ----EEEEEcCcchhhhhcccc-cc-------ccEEEEEEecCC----eEEEEeCCCeEEEEEccccccccccccc----
Q 038568 164 ----FKIWNASNYKCLESVNKA-HE-------DAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKERKSR---- 223 (357)
Q Consensus 164 ----i~iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~---- 223 (357)
|..+|.++++.+..++.. |. .+........++ .++.++.+|.++++|.++++........
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 999999999988776322 11 122222222355 4888899999999998844322100000
Q ss_pred --------eeeeeE------eeccc-----------cceeEEEEecCCCEEEEEec------------------------
Q 038568 224 --------HMLVTT------LVKHR-----------STVNALALNGDGSLLFSGGC------------------------ 254 (357)
Q Consensus 224 --------~~~~~~------~~~~~-----------~~v~~~~~~~~~~~l~~~~~------------------------ 254 (357)
..++.. +.... ..-..++|+|+..++++...
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 000000 00000 01123788998887777532
Q ss_pred ---------------------CCeEEEEecccCCceeeeeeccCCccce-EEEeecCceEEEecCCCeEEEeeCCCCcce
Q 038568 255 ---------------------DRWIVVWERERDHRMVFAEALWGHTGAL-LCLINVGDLLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 255 ---------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
+|.|+.||+.+++....... +.... -.+.-.+.+++.++.||.++.||.+++
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG--- 506 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG--- 506 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCC---
Confidence 37899999999875443332 21111 234456778999999999999999998
Q ss_pred eeeeeecCCcC-ceEEEEEeeCCC
Q 038568 313 RCMAFLEGHEK-PVKSLVAISSSS 335 (357)
Q Consensus 313 ~~~~~~~~h~~-~v~~~~~~~~~~ 335 (357)
+.+..++...+ .-.-+.|..+++
T Consensus 507 ~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 507 EKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceeeeCCCCcccCceEEEECCE
Confidence 44444443322 223466777776
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-12 Score=105.04 Aligned_cols=178 Identities=15% Similarity=0.097 Sum_probs=97.9
Q ss_pred cCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 82 ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 82 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
.+.+++++.|+.|..||..+++..-.... ..+.+..+.. ..+++++
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------------------------~~~~s~p~~~~g~~~v~~s 56 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------------------------DPVLQVPTHVEEPAFLPDP 56 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------CCSCCCC-----CCEEECT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------CCceecceEcCCCEEEEeC
Confidence 34489999999999999999986554432 1111111122 4677778
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEE-EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVN-AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
.||.|+.||.++++.+..+.......+. +..+..++.+++++.++.++.||.++ .+.+..+..+.
T Consensus 57 ~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~t----------G~~~w~~~~~~---- 122 (369)
T 2hz6_A 57 NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLT----------GEKQQTLSSAF---- 122 (369)
T ss_dssp TTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------
T ss_pred CCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCC----------CcEEEEecCCC----
Confidence 9999999999988876655211111111 11112355788888999999999882 22333332222
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-----ceEEEecCCCeEEEeeCCCCc
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-----DLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~vw~~~~~~ 310 (357)
...++|++..+++++.|+.|+.||.++++....... .. .....+.+ +.+++++.||.|+.||.++++
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEE-EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec-cc----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 234566788899999999999999998875433321 11 11222333 567788899999999999884
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-08 Score=90.31 Aligned_cols=288 Identities=10% Similarity=0.087 Sum_probs=160.1
Q ss_pred EEEecceEEEeeCC-ceEEEeccCCccccceeccc-cC-CCCceE-EEEEecCceEEeec------CCeEEEEecCCccc
Q 038568 35 LAVHNSLLYAASLN-EINVFDLISDYSHVDTFSND-LS-SSGSVK-SITFHITKIFTAHQ------DCKIRVWKITASRQ 104 (357)
Q Consensus 35 ~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~-~~-~~~~v~-~l~~~~~~l~~~~~------d~~i~vwd~~~~~~ 104 (357)
+++.+..|++++.| .|..+|. .+++.+..+... .. ....+. ......+.++.++. ++.|..+|..+++.
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDA-ATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEET-TTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ceEECCEEEEEcCCCEEEEEEC-CCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence 44557788888888 9999999 899888777641 00 001121 11122344666553 79999999999987
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccc---------cccccEEEEEEec--CeEEEEecCC-----------
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL---------EHWDAVSDLVVKQ--GLMYSVSWDR----------- 162 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~l~~~~~dg----------- 162 (357)
.-.............. .+ . .......|. +.......+++++ ++++.+..++
T Consensus 203 ~W~~~~~~~~~~~~~~--~~--~---~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~ 275 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFE--DE--S---MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPK 275 (677)
T ss_dssp EEEEESSCCCTTSCCS--SH--H---HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred EEEeccCCCCcccccc--cc--c---cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCcc
Confidence 6655443221000000 00 0 000000010 1112223566766 6777776654
Q ss_pred --------eEEEEEcCcchhhhhcccccc--------ccEEEEEEecCC----eEEEEeCCCeEEEEEcccccccccccc
Q 038568 163 --------SFKIWNASNYKCLESVNKAHE--------DAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 163 --------~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
.|..+|.++++.+..++..+. .....+....+| .++.++.+|.++++|.++++.......
T Consensus 276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 599999999998877642221 112222333355 388899999999999884332111000
Q ss_pred ceee-eeEeeccccce------------------------eEEEEecCCCEEEEEecC----------------------
Q 038568 223 RHML-VTTLVKHRSTV------------------------NALALNGDGSLLFSGGCD---------------------- 255 (357)
Q Consensus 223 ~~~~-~~~~~~~~~~v------------------------~~~~~~~~~~~l~~~~~d---------------------- 255 (357)
.... ...+.....++ ..++|+|+..++++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 0000 00000000001 257899988888776432
Q ss_pred ---------------------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceee
Q 038568 256 ---------------------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRC 314 (357)
Q Consensus 256 ---------------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 314 (357)
|.|..||+.+++....... +....-..+...+..++.++.||.+++||.++++ .
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~---~ 510 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE---K 510 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC---E
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc---e
Confidence 7899999998875443332 1111112344556788889999999999999984 4
Q ss_pred eeeecC-CcCceEEEEEeeCCC
Q 038568 315 MAFLEG-HEKPVKSLVAISSSS 335 (357)
Q Consensus 315 ~~~~~~-h~~~v~~~~~~~~~~ 335 (357)
+..+.. +...-.-+.+..+++
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTE
T ss_pred eeeeeCCCCcccCCEEEEeCCE
Confidence 444432 222223455667765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-08 Score=81.77 Aligned_cols=223 Identities=10% Similarity=0.076 Sum_probs=132.0
Q ss_pred CccceeEEEEe--cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee-cCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH-QDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~-~d~~i~vwd~~~ 101 (357)
........+|+ ++ ++++...+ .|..|+. .. + ...+.. +...+..+++.+++ |+++. .++.|.+|+.+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g-~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DG-T-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TS-C-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CC-C-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 44566788888 66 66676677 9999987 43 3 345554 66788999999987 66555 45789999976
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE----Eec-------------CC
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS----VSW-------------DR 162 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~----~~~-------------dg 162 (357)
++.......... .....+.++++.+ .+.++ |.. .+
T Consensus 116 g~~~~~~~~~~~--------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 116 GQAHLLVGRYAG--------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp SCEEEEECEETT--------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred CCEEEEEeccCC--------------------------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 432211111100 1123456778887 44443 321 25
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCC------CeEEEEEccccccccccccceeeeeEeecccc
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSAD------GRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (357)
.|..+|..+++... + . .......++|+|++. |+.+... +.|.+|++.. .. .............
T Consensus 170 ~v~~~d~~~g~~~~-~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~------~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 170 SVYRLPPDGSPLQR-M-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD------GA-LHDRRHFASVPDG 239 (305)
T ss_dssp EEEEECSSSCCCEE-E-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET------TE-EEEEEEEECCSSS
T ss_pred eEEEEcCCCCcEEE-E-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC------CC-ccCCeEEEECCCC
Confidence 67778876655332 2 2 334567899999994 6666554 7899999862 11 0000011111234
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCe
Q 038568 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRT 300 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 300 (357)
....++++++|+ |.+++.++ |.+|+.. ++....+. ... .+..++|.++ .|..++.++.
T Consensus 240 ~pdgi~~d~~G~-lwv~~~~g-v~~~~~~-g~~~~~~~---~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 240 LPDGFCVDRGGW-LWSSSGTG-VCVFDSD-GQLLGHIP---TPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CCCSEEECTTSC-EEECCSSE-EEEECTT-SCEEEEEE---CSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCeEEECCCCC-EEEecCCc-EEEECCC-CCEEEEEE---CCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 456789999998 44444554 9999985 44332222 222 3666677543 6666665543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-07 Score=73.45 Aligned_cols=245 Identities=10% Similarity=0.082 Sum_probs=143.0
Q ss_pred cceEEEeeCCceEEEeccCCcccc-----ceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeee
Q 038568 39 NSLLYAASLNEINVFDLISDYSHV-----DTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
|.+|+.+..+.|+.+++ +..... ..+.. ....+..++|+++. | ++-..++.|.++++........+.
T Consensus 1 ~~~l~~~~~~~I~~~~~-~g~~~~~~~~~~~~~~---~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~- 75 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPL-ERNTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR- 75 (267)
T ss_dssp CEEEEEEEEEEEEEEEE-SSSCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-
T ss_pred CcEEEEEcCCeEEEEEe-cCcccccccceeeecC---CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-
Confidence 34566665448888888 553321 11221 23467899999853 4 444557899999987653221110
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEE-ecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV-SWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
........+++.+ +.++.+ ...+.|.++++.... ...+.........
T Consensus 76 -----------------------------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~ 125 (267)
T 1npe_A 76 -----------------------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPR 125 (267)
T ss_dssp -----------------------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEE
T ss_pred -----------------------------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCcc
Confidence 1123567888886 445444 456789999986432 2222122224578
Q ss_pred EEEEecC-CeEEEEeC---CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEe
Q 038568 188 AVVVSDN-GVVYTGSA---DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWE 262 (357)
Q Consensus 188 ~~~~~~~-~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd 262 (357)
.++++|+ +.|+.+.. .+.|..+++. .. ....+ ..........+++++++..|+.+ ...+.|.++|
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~d------g~--~~~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMD------GT--NRRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETT------SC--CCEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecC------CC--CcEEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 9999995 56555543 3688888875 10 11111 11223457889999987666554 4568899999
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCc-CceEEEEEeeCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHE-KPVKSLVAISSSS 335 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 335 (357)
+.......... +. .....++.+++ ++++....+.|..+|..++ +.+..+.... ....++++.|++-
T Consensus 196 ~~g~~~~~~~~---~~-~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g---~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 196 PAQPGRRKVLE---GL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS---KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEEEEE---CC-CSEEEEEEETTEEEEEETTTTEEEEEETTTT---EEEEEECCSSCCCCCCEEEECSCC
T ss_pred cCCCceEEEec---CC-CCceEEEEeCCEEEEEECCCCeEEEEeCCCC---CceEEEccccccccceeeecCccC
Confidence 97543222221 11 12245555556 4445556789999999887 4444444332 2467888888763
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-09 Score=94.93 Aligned_cols=219 Identities=11% Similarity=0.096 Sum_probs=125.1
Q ss_pred CCCceEEEEEecCc--eEE-----eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFT-----AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
+...+..++|+||+ |+- |+....|++||+.+++.... .+. . .
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~---------------------------~--~ 175 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK---------------------------D--V 175 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE---------------------------E--E
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC---------------------------C--c
Confidence 55678899999997 442 23335799999998874332 110 0 0
Q ss_pred cEEEEEEec-CeEEEEecCC-------------eEEEEEcCcchhhh--hcc-cc-ccccEEEEEEecCCe-E-EEEe--
Q 038568 144 AVSDLVVKQ-GLMYSVSWDR-------------SFKIWNASNYKCLE--SVN-KA-HEDAVNAVVVSDNGV-V-YTGS-- 201 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~dg-------------~i~iwd~~~~~~~~--~~~-~~-~~~~v~~~~~~~~~~-l-~~~~-- 201 (357)
....++|+. +.|+.++.+. .|++|++.++.... .+. .. +......+.++|++. | ++..
T Consensus 176 k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 176 KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 112344544 5666666553 49999998765321 121 22 344578899999994 3 3333
Q ss_pred -CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-c---CCeEEEEecccCCceeeeeecc
Q 038568 202 -ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-C---DRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 202 -~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
....|+++|+.. .. .....+..+....... +++++..|+..+ . .+.|..+|+.++... ....+.
T Consensus 256 ~~~~~i~~~d~~~------~~---~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~ 324 (693)
T 3iuj_A 256 TSGNRLYVKDLSQ------EN---APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLI 324 (693)
T ss_dssp SSCCEEEEEETTS------TT---CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEE
T ss_pred CCCcEEEEEECCC------CC---CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEe
Confidence 235899999862 11 1223344444444444 566666555443 3 367999999876531 111233
Q ss_pred CCccceEEEeecCceEEEec-CCC--eEEEeeCCCCcceeeeeeec-CCcCceEEEEEeeCCC
Q 038568 277 GHTGALLCLINVGDLLASGS-ADR--TVRIWQRGKENCYRCMAFLE-GHEKPVKSLVAISSSS 335 (357)
Q Consensus 277 ~~~~~v~~~~~~~~~l~~~~-~dg--~i~vw~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 335 (357)
.|...+..++..++.|+... .++ .|++|++..+. ...+. ...+.+..+.++++++
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECCCCTTCS
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeeecCCCCC
Confidence 34433446677777655554 444 68899887542 22222 2345566777777665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-11 Score=101.16 Aligned_cols=183 Identities=12% Similarity=0.122 Sum_probs=97.3
Q ss_pred ecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 38 HNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 38 s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
.+..+++++.| .|+.||. .+++.+..+.. +.+.+..+..++ +++++.|+.|..||..+++..........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSK-RTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEET-TTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-
T ss_pred eCCEEEEEcCCCEEEEEEC-CCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-
Confidence 47889999999 9999999 89988877763 334343344444 66678999999999988765433221000
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
.. ....++. .....+++++.++.|+.||.++|+.+..+ ..+. ...++|+
T Consensus 81 -~~----------------------~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~-~~~~----~~~~~p~ 129 (369)
T 2hz6_A 81 -EL----------------------VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTL-SSAF----ADSLSPS 129 (369)
T ss_dssp -HH----------------------HTTCSCC--------CCCCEEEEEEEEECCC------------------------
T ss_pred -cc----------------------cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEe-cCCC----ccccccc
Confidence 00 0011110 01256778888999999999999998887 3322 1234454
Q ss_pred C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC---CEEEEEecCCeEEEEecccCCcee
Q 038568 195 G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG---SLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 195 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
+ .+++++.++.|+.||.++. +.... +... ......+.++. ..+++++.||.|+.||.++++...
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG------~~~W~----~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTR------ELRWN----ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSS------SCCCE----EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCEEEEEecCCEEEEEECCCC------CEEEe----Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 4 6888999999999998732 21111 1111 11222333322 467778899999999999887543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-08 Score=83.50 Aligned_cols=253 Identities=11% Similarity=0.085 Sum_probs=153.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccc-cC---CC
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSND-LS---SS 72 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~-~~---~~ 72 (357)
+..+.+.+.++.. -..+ .++++ |++|+++. .+ .|.++|. .+.+.+..+... .. ..
T Consensus 105 D~~t~~vv~~I~v-----G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~-~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 105 DGSTGRILGMTDG-----GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP-VTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp ETTTTEEEEEEEE-----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBS
T ss_pred ECCCCEEEEEEEC-----CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC-CCCcEEEEEECCCccccccC
Confidence 3455666666664 2234 78898 88787775 35 8999999 888888877531 00 01
Q ss_pred CceEEEEEecCc--eEEeec--CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQ--DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.....++|+||+ ++.+.. ++.|.+.|+.+.+....+... + ...+
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----------------------------g----~~~~ 224 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----------------------------D----CYHI 224 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----------------------------S----EEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----------------------------C----ceee
Confidence 345578999987 666553 578999999998766554421 0 0111
Q ss_pred EEec-CeEEEEecCCeEEEEEcCcchhhh----hcccccccc-EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc
Q 038568 149 VVKQ-GLMYSVSWDRSFKIWNASNYKCLE----SVNKAHEDA-VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 149 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~-v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 221 (357)
.... ..+++.+.||.+.+.+..+++... .+ .....+ ...+.+.+++ .++.....+.+.+.|.....
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~------ 297 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG------ 297 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC------
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc------
Confidence 1111 556677788888888885554431 12 111111 1234567776 45555678899999985111
Q ss_pred cceeeeeEee-------c---cccceeEEEEecCCCEEEEEec----------CCeEEEEecccCCceeeeeeccCCccc
Q 038568 222 SRHMLVTTLV-------K---HRSTVNALALNGDGSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGHTGA 281 (357)
Q Consensus 222 ~~~~~~~~~~-------~---~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 281 (357)
......+. . .......++++|+++.+++... ++.|.++|..+.+.+..+.. +. .
T Consensus 298 --~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~--~ 371 (426)
T 3c75_H 298 --ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GH--E 371 (426)
T ss_dssp --EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EE--E
T ss_pred --eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CC--C
Confidence 00111110 0 0111223789999887777643 35799999998885544432 11 2
Q ss_pred eEEEeec--Cc-eEEEec-CCCeEEEeeCCCCcceeeeeee
Q 038568 282 LLCLINV--GD-LLASGS-ADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 282 v~~~~~~--~~-~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
...+.++ ++ ++++.. .++.|.++|+.+. +.+..+
T Consensus 372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~---kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATG---EELRSV 409 (426)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEETTTC---CEEEEE
T ss_pred cCeEEEccCCCEEEEEEcCCCCeEEEEECCCC---CEEEEe
Confidence 4445555 55 677776 5999999999997 445554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-08 Score=81.52 Aligned_cols=193 Identities=8% Similarity=0.053 Sum_probs=118.3
Q ss_pred cceEEEee-CC-ceEEEeccCCc----cccceecccc----CCCCceEEEEEecCc-eEEeecC------CeEEEEecCC
Q 038568 39 NSLLYAAS-LN-EINVFDLISDY----SHVDTFSNDL----SSSGSVKSITFHITK-IFTAHQD------CKIRVWKITA 101 (357)
Q Consensus 39 ~~~l~t~~-~d-~i~iw~~~~~~----~~~~~~~~~~----~~~~~v~~l~~~~~~-l~~~~~d------~~i~vwd~~~ 101 (357)
+++|++.+ .+ .|.++|+ .+. +..++++... .....-..+...|++ ++++..+ +.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~-~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDT-KPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEEC-CSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEEC-CCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCC
Confidence 56666655 45 9999998 543 4445552000 011245667788998 4454444 6899999998
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-------------------c
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-------------------W 160 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------------------~ 160 (357)
.+.......-. ....--.++.|+| +.+++.. .
T Consensus 174 ~~v~~~~~~~~---------------------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 174 FEPLGKWEIDR---------------------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp CCEEEECCSBC---------------------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred CeEEEEEccCC---------------------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 87665543211 1111233567777 6666663 3
Q ss_pred CCeEEEEEcCcchhhhhcccc-ccccEEEEEE--ecCCe--EEEEe-----CCCeEEEEEccccccccccccceeeeeE-
Q 038568 161 DRSFKIWNASNYKCLESVNKA-HEDAVNAVVV--SDNGV--VYTGS-----ADGRIRVWERSVVDHNKERKSRHMLVTT- 229 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~--l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~- 229 (357)
+.+|.+||+.+++.+.++..+ .......+.| +|++. ++++- .+++|.+|.... + .......
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~------g--~~~~~~vI 298 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED------G--KWNAEKVI 298 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET------T--EEEEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC------C--ceeEEEEE
Confidence 789999999988877777332 2234555656 89983 44444 667888877641 1 1111111
Q ss_pred -eec----------------cccceeEEEEecCCCEEEEEec-CCeEEEEecccCC
Q 038568 230 -LVK----------------HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDH 267 (357)
Q Consensus 230 -~~~----------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~ 267 (357)
+.. -......+.+++||++|.++.. .+.|.+||+....
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~ 354 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF 354 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 000 0234678999999998888765 7889999986443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-06 Score=81.07 Aligned_cols=271 Identities=10% Similarity=0.164 Sum_probs=167.6
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccc-----cCCCCceEEEEEecCc-eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSND-----LSSSGSVKSITFHITK-IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~-----~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~ 99 (357)
+...|.++... ...|..|+.+ -+..||. .+.+.. .+... .-....|.++...+++ |..|+.+ -|.+|+.
T Consensus 213 ~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~-~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWVATEGAGLFLINP-KTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEEEEBSSCEEEEET-TTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEEEEECCCCeEEEeC-CCCeEE-EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcC
Confidence 34568888887 5667777766 8999998 654332 22210 0124679999988777 7777766 5888998
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
.+++... +...+... ..-....|.++...+ ..|..|+.++-|..++..+.+.. .+
T Consensus 290 ~~~~~~~-~~~~~~~~----------------------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~ 345 (795)
T 4a2l_A 290 GTDSFAS-YSSNPVEN----------------------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NI 345 (795)
T ss_dssp TTTEEEE-ECCCTTST----------------------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EE
T ss_pred CCCeEEE-EecCCCCC----------------------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EE
Confidence 7654322 11100000 002346799999988 88888998888999987654321 11
Q ss_pred c------ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe------eccccceeEEEEecCC
Q 038568 179 N------KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL------VKHRSTVNALALNGDG 246 (357)
Q Consensus 179 ~------~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~ 246 (357)
. ......|.++...+++.|..|+.++-|..||... .. ....... ......|.++...+++
T Consensus 346 ~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~------~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 346 RNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT------QR--FTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp CCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT------CC--EEEECCC------CCSCSCEEEEEEETTT
T ss_pred cCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC------Cc--EEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 0 1124569999999999888899988899998761 11 1111000 0123568999998888
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeee-ccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeee----cC
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEA-LWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFL----EG 320 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~ 320 (357)
+.|..|+.++-|.+||..+++....... .......|.++..+++ .|..|+.+ -+.+||..+++ ....... ..
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRS-FTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTE-EEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCe-EEEcccccccccc
Confidence 8577777777799999887652211110 0013456788877755 55555554 48889987752 1111111 11
Q ss_pred CcCceEEEEEeeCCC
Q 038568 321 HEKPVKSLVAISSSS 335 (357)
Q Consensus 321 h~~~v~~~~~~~~~~ 335 (357)
....|.++...+++.
T Consensus 496 ~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 496 VSKQITTLFRDSHKR 510 (795)
T ss_dssp CCCCEEEEEECTTCC
T ss_pred CCceEEEEEECCCCC
Confidence 235788998888876
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-07 Score=82.03 Aligned_cols=266 Identities=10% Similarity=0.046 Sum_probs=162.0
Q ss_pred ccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceecc-------ccCCCCceEEEEEecCc-eEEeecCCeEEEEe
Q 038568 29 HMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSN-------DLSSSGSVKSITFHITK-IFTAHQDCKIRVWK 98 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd 98 (357)
...|.++..+ ...|..|+.+ -|..++. .... ...+.. ..-....|.++...+++ |..|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISN-APPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECS-SCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCC-CCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence 4679999888 6678888877 8999987 5432 222210 00134579999988866 88888777799999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
..++..... .... ......|.++...+ ..|..|+.++-|..+|..+++....
T Consensus 390 ~~~~~~~~~-~~~~--------------------------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 390 NGKRVAIYN-KENR--------------------------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp TTEEEEECC--------------------------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred CCCCeEEEc-cCCC--------------------------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 765432111 0000 02346788998887 7788888877899999876643221
Q ss_pred cc-ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee---ccccceeEEEEecCCCEEEEEe
Q 038568 178 VN-KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV---KHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 178 ~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
.. ......|.++...+++.|..|+. +.|..||..... ........ .....|.++...++|++.+ |+
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt 512 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK--------VIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GT 512 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS--------CCEEECTTTSSCSCSCEEEEEECTTCCEEE-EE
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe--------EEecccCcccccccceeEEEEEcCCCCEEE-EE
Confidence 10 12346789999988888777777 668888876211 11111000 1135788999888887554 45
Q ss_pred cCCeEEEEecccCCceeeeeeccC-CccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEE
Q 038568 254 CDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVA 330 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~ 330 (357)
.++-|..||..+.+.. ......+ ....|.++..+++ .|..|+.+|.+..||..+++ ........+ ....|.++..
T Consensus 513 ~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEE
T ss_pred cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc-EEEccccCCCCCceEEEEEE
Confidence 5334888888755321 1111111 2346788877655 55555667765889987653 222211111 2245778888
Q ss_pred eeCCC
Q 038568 331 ISSSS 335 (357)
Q Consensus 331 ~~~~~ 335 (357)
.+++.
T Consensus 591 d~~g~ 595 (781)
T 3v9f_A 591 DKNGN 595 (781)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 77775
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-08 Score=81.88 Aligned_cols=260 Identities=10% Similarity=-0.036 Sum_probs=154.2
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccCC----
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLSS---- 71 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~~---- 71 (357)
.+..+.+.+.++.. | ..+ .++++ +++++++. .+ .|.+||+ .+++.+.++....+.
T Consensus 51 ID~~t~~v~~~i~v--G---~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 51 SCAGCGVTLGHSLG--A---FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EETTTTEEEEEEEE--C---TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCB
T ss_pred EECCCCeEEEEEeC--C---CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcccccc
Confidence 34556777777764 2 334 68998 88888875 35 9999999 999999988641000
Q ss_pred CCceEEEEEecCc--eEEeec--CCeEEE--EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccE
Q 038568 72 SGSVKSITFHITK--IFTAHQ--DCKIRV--WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (357)
......++++||+ ++.+.. +..+.+ +|+.+ ...+.. +. .
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-----------------------------~~--~- 167 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-----------------------------AS--C- 167 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-----------------------------SS--C-
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-----------------------------CC--c-
Confidence 1345689999997 666653 467888 99876 222211 00 0
Q ss_pred EEEEEec-CeEEEEecCCeEEEEEcCc-----chhhh----hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccc
Q 038568 146 SDLVVKQ-GLMYSVSWDRSFKIWNASN-----YKCLE----SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 146 ~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 215 (357)
..+.... ..+++.+.||.+.+.|+.+ ++... .+ .....+. ....++.++..+. +.+.+.|....
T Consensus 168 ~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i-~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~- 241 (368)
T 1mda_H 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ-NCSSQAA---QANYPGMLVWAVA-SSILQGDIPAA- 241 (368)
T ss_dssp CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS-CBCSCCE---EETTTTEEEECBS-SCCEEEECCSS-
T ss_pred eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee-eCCCCcc---ccccCCEEEEEcC-CEEEEEECCCC-
Confidence 0111122 4556677888888889886 54432 22 1222333 3333345555556 99999998511
Q ss_pred cccccccceeeeeEeec-------c---ccceeEEEEecCCCEEEEEec-C--------CeEEEEecccCCceeeeeecc
Q 038568 216 HNKERKSRHMLVTTLVK-------H---RSTVNALALNGDGSLLFSGGC-D--------RWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~-------~---~~~v~~~~~~~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~~ 276 (357)
.......+.. + ......++++|+++.++++.. + +.+.++|+.+.+....+..
T Consensus 242 -------~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-- 312 (368)
T 1mda_H 242 -------GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-- 312 (368)
T ss_dssp -------CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--
T ss_pred -------cceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--
Confidence 0111111110 0 011122689999998887643 2 3567999998875433322
Q ss_pred CCccceEEEeecCc---eEEEec-CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 277 GHTGALLCLINVGD---LLASGS-ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 277 ~~~~~v~~~~~~~~---~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.. ....+.++++ .+++.. .++.|.++|+.+. +.+..+..... ...+++.+
T Consensus 313 -g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~---kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 313 -GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD---QDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp -EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC---EEEEECCCCSC-CCEEECCC
T ss_pred -CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC---cEEEEEECCCC-CCEEEeec
Confidence 11 3556666554 566666 5999999999997 66666655433 34555543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-07 Score=76.18 Aligned_cols=225 Identities=8% Similarity=0.018 Sum_probs=128.4
Q ss_pred eEEeecCCeEEEEecCCc-cceeeeeecCccccceeeeecCCCeEEEeccccccccc-ccccEEEEEEec-CeEEEEecC
Q 038568 85 IFTAHQDCKIRVWKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE-HWDAVSDLVVKQ-GLMYSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~l~~~~~d 161 (357)
++++..+++|.++|+.+. ...+..+.+.... +... ....-..+...| ..++++..+
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~---------------------~~~~~g~s~Ph~~~~~pdGi~Vs~~g~ 157 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE---------------------VKKVSGYSRLHTVHCGPDAIYISALGN 157 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHH---------------------HHHHHCEEEEEEEEECSSCEEEEEEEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhh---------------------cccccCCCcccceeECCCeEEEEcCCC
Confidence 777888999999998644 2223333221000 0000 011223445556 555555444
Q ss_pred ------CeEEEEEcCcchhhhhcccccc--ccEEEEEEecCCe-EEEEe-------------------CCCeEEEEEccc
Q 038568 162 ------RSFKIWNASNYKCLESVNKAHE--DAVNAVVVSDNGV-VYTGS-------------------ADGRIRVWERSV 213 (357)
Q Consensus 162 ------g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-l~~~~-------------------~d~~i~i~d~~~ 213 (357)
|.|.++|.++++.+.++..... ..-..+.|+|++. +++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~- 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR- 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-
Confidence 7899999999998888842212 2234578899885 55542 37899999997
Q ss_pred cccccccccceeeeeEeecc--ccceeEEEE--ecCCCEEEEEec------CCeEEEEecccCCceeeeeec--c-----
Q 038568 214 VDHNKERKSRHMLVTTLVKH--RSTVNALAL--NGDGSLLFSGGC------DRWIVVWERERDHRMVFAEAL--W----- 276 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~--~----- 276 (357)
..+....+... ......+.| +|+++++++++. +++|.+|..+.+. ......+ .
T Consensus 237 ---------~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 237 ---------KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLE 306 (462)
T ss_dssp ---------TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECC
T ss_pred ---------CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCcccc
Confidence 22344444432 123445655 999998888774 6688877665421 1111110 0
Q ss_pred C-----------CccceEEEee--cCceEEE-ecCCCeEEEeeCCCCcceeeeeeecCCc--------------CceEEE
Q 038568 277 G-----------HTGALLCLIN--VGDLLAS-GSADRTVRIWQRGKENCYRCMAFLEGHE--------------KPVKSL 328 (357)
Q Consensus 277 ~-----------~~~~v~~~~~--~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~h~--------------~~v~~~ 328 (357)
+ -......+.. ++++|.+ .-..+.|.+||+......+.+..+.... +.-..+
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 0 0122334444 4455544 4447899999997543345554443221 135789
Q ss_pred EEeeCCCCCCCCeEEEEEcC
Q 038568 329 VAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~ 348 (357)
.++||++ +|+++.
T Consensus 387 ~lSpDGk-------~LyVaN 399 (462)
T 2ece_A 387 EISRDGR-------RVYVTN 399 (462)
T ss_dssp EECTTSS-------EEEEEC
T ss_pred EEcCCCC-------EEEEEc
Confidence 9999998 666554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-06 Score=77.38 Aligned_cols=267 Identities=7% Similarity=0.110 Sum_probs=164.7
Q ss_pred eeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeee
Q 038568 32 ISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
|.++... ...|..+..+ .|..|+. .+.+....... .....|.++...+++ |..++.++-+..||..+++.....
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~-~~~~~~~~~~~--~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSI-TQKTFEKVIPI--LGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEET-TTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeC-CCCeEEEecCC--CCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEee
Confidence 8888887 5566667776 8999997 55443222111 145678888887776 777776656889998765432211
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcc------cc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVN------KA 181 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~ 181 (357)
.... .. .......|.++...+ ..+..|+.+ -|.+||..+++...... .-
T Consensus 252 ~~~~-~~----------------------~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l 307 (795)
T 4a2l_A 252 HSPS-NP----------------------KSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSL 307 (795)
T ss_dssp CCTT-CT----------------------TSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSC
T ss_pred cCCC-Cc----------------------cccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCC
Confidence 1000 00 001235689998887 777777776 58899987654322110 11
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe----eccccceeEEEEecCCCEEEEEecCCe
Q 038568 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL----VKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
....|.++...++|.|..|+.++-|..|+..... ....... ......|.++...++|+ |..|+.++-
T Consensus 308 ~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G 378 (795)
T 4a2l_A 308 SQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--------FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG 378 (795)
T ss_dssp SSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--------SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC
T ss_pred CCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--------ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC
Confidence 3467999999999999899998889999875211 1111000 01235688999888876 556777767
Q ss_pred EEEEecccCCceeeeeec-----cCCccceEEEeecCc-e-EEEecCCCeEEEeeCCCCcceeeeeee--cCCcCceEEE
Q 038568 258 IVVWERERDHRMVFAEAL-----WGHTGALLCLINVGD-L-LASGSADRTVRIWQRGKENCYRCMAFL--EGHEKPVKSL 328 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~-~-l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~h~~~v~~~ 328 (357)
|..||..++......... .-....|.++..+.+ . |..|+.++-|..||..+++. ...... ......|.++
T Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 379 LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEE
T ss_pred eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEE
Confidence 999998765422111110 012356788877654 5 88888877899999887631 111110 0234578888
Q ss_pred EEeeCCC
Q 038568 329 VAISSSS 335 (357)
Q Consensus 329 ~~~~~~~ 335 (357)
...+++.
T Consensus 458 ~~d~~g~ 464 (795)
T 4a2l_A 458 LPDGEGN 464 (795)
T ss_dssp EECSSSC
T ss_pred EECCCCC
Confidence 8877775
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-08 Score=82.32 Aligned_cols=251 Identities=7% Similarity=-0.066 Sum_probs=148.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecCCccceeeeeecCcccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.|.+.|. .+++.+.++.. ...+ .+.++|++ ++.+. .++.|.+||+.+.+....+.......
T Consensus 47 ~vsvID~-~t~~v~~~i~v---G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~- 119 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLG---AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR- 119 (368)
T ss_dssp EEEEEET-TTTEEEEEEEE---CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-
T ss_pred eEEEEEC-CCCeEEEEEeC---CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-
Confidence 5669999 99999999986 4455 79999997 55554 47899999999998776664310000
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEE--EEcCcchhhhhccccccccEEEEE
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKI--WNASNYKCLESVNKAHEDAVNAVV 190 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~~~ 190 (357)
. ........+.++| ++++.+.. +..+.+ +|+.+ +..+.. ... ..
T Consensus 120 --------------------~--~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v--~~~---~~ 169 (368)
T 1mda_H 120 --------------------F--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS--ASC---FH 169 (368)
T ss_dssp --------------------C--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC--SSC---CC
T ss_pred --------------------c--ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC--CCc---eE
Confidence 0 0002234678888 67777764 467888 99877 334411 111 12
Q ss_pred EecCC--eEEEEeCCCeEEEEEccccccccccccceeee----eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 191 VSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLV----TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 191 ~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+.|++ .+++.+.|+.+.+.|+...... ..+.. ..+.....+. . .+++..++..+. +.+.+.|..
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~-----~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~ 239 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAA-----AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIP 239 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCC-----CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECC
T ss_pred EccCCCeEEEEEcCCCCEEEEECcccccc-----CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECC
Confidence 33444 4667778899888887620000 01111 0111122333 3 666666666666 899999986
Q ss_pred cCCceeeeeecc------------CCccceEEEeecCceEEEe-c---C-----CCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 265 RDHRMVFAEALW------------GHTGALLCLINVGDLLASG-S---A-----DRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 265 ~~~~~~~~~~~~------------~~~~~v~~~~~~~~~l~~~-~---~-----dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
..... ....+. ........+..+++.++.+ . . ++.+.++|+.+. +.+..+....
T Consensus 240 ~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~- 314 (368)
T 1mda_H 240 AAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH- 314 (368)
T ss_dssp SSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-
T ss_pred CCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECCC-
Confidence 53211 111110 0111123455555555443 2 2 235669999987 4444444332
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
...+++|+|+++ .++++.. .++.|.++|
T Consensus 315 ~p~gi~~s~Dg~------~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 315 DSDAIIAAQDGA------SDNYANSAGTEVLDIYD 343 (368)
T ss_dssp EECEEEECCSSS------CEEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCC------EEEEEccCCCCeEEEEE
Confidence 578999999986 3566666 599999886
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-07 Score=70.94 Aligned_cols=193 Identities=7% Similarity=-0.006 Sum_probs=123.9
Q ss_pred cEEEEEEec-CeEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 144 AVSDLVVKQ-GLMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
....+.|++ ..|+.++. ++.|+++|+.+++.+..+..........+++..+...++.-.++.+.++|..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~------- 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR------- 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT-------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC-------
Confidence 357889998 66666543 5899999999999888873222223345666643335556678999999987
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc---ceEEEeecCc-eEEEe
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG---ALLCLINVGD-LLASG 295 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~l~~~ 295 (357)
..+.+..+..... ....+++|++.++++..++.|.++|..+.+....+..-. ... ....+.+.+. ..+..
T Consensus 95 ---t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 95 ---TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp ---TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEETTEEEEEE
T ss_pred ---CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEECCEEEEec
Confidence 3344444432211 224466788877777788999999998877544433211 111 2345555544 44555
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecC----------CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEG----------HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..++.|.+.|..+++....+..-.. -....++|+|+|+++ ++++++...+.|.+
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~------~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK------RIFVTGKLWPKLFE 232 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT------EEEEEETTCSEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC------EEEEECCCCCeEEE
Confidence 5688999999999854333332100 013568999999976 57888877777754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-06 Score=77.96 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=169.5
Q ss_pred ccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceec-----------cccCCCCceEEEEEecCc-eEEeecCCeE
Q 038568 29 HMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFS-----------NDLSSSGSVKSITFHITK-IFTAHQDCKI 94 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~-----------~~~~~~~~v~~l~~~~~~-l~~~~~d~~i 94 (357)
...|.++... ...|..|+.. -|.+++. .+.+...... ...-....|.++...+++ |..|+.++-|
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDL-QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEET-TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECC-CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence 3568999887 6677778875 8888998 5543221111 001145679999988877 8888878889
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcch
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 173 (357)
..++........ +...+... .........|.++...+ ..|..|+.++-|..||..+++
T Consensus 336 ~~~~~~~~~~~~-~~~~~~~~--------------------~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 336 NFISNAPPTFHT-WSYSPTQM--------------------NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp EEECSSCCSCEE-EC----CC--------------------CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred EEeCCCCCccee-eccCcccc--------------------ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence 999887554221 11100000 00002235688998888 788888877779999987654
Q ss_pred hhhhcc--ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee---ccccceeEEEEecCCCE
Q 038568 174 CLESVN--KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV---KHRSTVNALALNGDGSL 248 (357)
Q Consensus 174 ~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 248 (357)
...... ......|.++...+++.|..|..++.+..+|.+. .. ...+. .....|.++...++++
T Consensus 395 ~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~----------~~-~~~~~~~~~~~~~v~~i~~d~~g~- 462 (781)
T 3v9f_A 395 AIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL----------KK-FQIIELEKNELLDVRVFYEDKNKK- 462 (781)
T ss_dssp EECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS----------CE-EEECCSTTTCCCCEEEEEECTTSE-
T ss_pred EEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC----------Cc-EEEeccCCCCCCeEEEEEECCCCC-
Confidence 322110 1234678999988888888888878888888751 11 11111 1345788888888776
Q ss_pred EEEEecCCeEEEEecccCCceeeeeecc---CCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeec-CCcC
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEALW---GHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLE-GHEK 323 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~ 323 (357)
|..|+.+ -|..||..+++... ..... .....|.++..+.+ .|..|+.++-|..||..+++ .+...... ....
T Consensus 463 lwigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~ 539 (781)
T 3v9f_A 463 IWIGTHA-GVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSN 539 (781)
T ss_dssp EEEEETT-EEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCS
T ss_pred EEEEECC-ceEEEeCCCCeEEe-cccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCC
Confidence 4455554 58999987654321 11111 11356788877765 66666664447788887642 11111111 1245
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.++...+++. +.++.. +|.|..||
T Consensus 540 ~i~~i~~d~~g~-------lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 540 TINQIYRSSKGQ-------MWLATG-EGLVCFPS 565 (781)
T ss_dssp CEEEEEECTTSC-------EEEEET-TEEEEESC
T ss_pred eeEEEEECCCCC-------EEEEEC-CCceEEEC
Confidence 688888888876 444333 66545554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.8e-07 Score=69.25 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=136.4
Q ss_pred cccceecccccCCCCCCCccc--eeEEEEec-ceEEEe-eC--C-ceEEEeccCCccccceeccccCCCCceEEEEEecC
Q 038568 11 AFKHHCIASLKIPSPDPHHMI--ISCLAVHN-SLLYAA-SL--N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT 83 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~--i~~~~~s~-~~l~t~-~~--d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 83 (357)
..+.+.++++. |... ...++|++ ..|+.+ +. + .|++.|+ .+++.+..+... .......+++..+
T Consensus 6 ~~~~~vv~~~p------~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~-~tg~v~~~i~l~--~~~fgeGi~~~g~ 76 (266)
T 2iwa_A 6 VYIVEVLNEFP------HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVAL-QTGKVENIHKMD--DSYFGEGLTLLNE 76 (266)
T ss_dssp EEEEEEEEEEE------CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEET-TTCCEEEEEECC--TTCCEEEEEEETT
T ss_pred ccCceEEEEEE------CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEEC-CCCCEEEEEecC--CCcceEEEEEeCC
Confidence 34667777887 6643 67999992 455544 32 5 9999999 999988887631 2223346777776
Q ss_pred c-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCC
Q 038568 84 K-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDR 162 (357)
Q Consensus 84 ~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 162 (357)
. .++.-.++.+.++|..+.+....+.. + ...=..++...+.++.+..++
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~-----------------------------g-~~~g~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTH-----------------------------Q-MKDGWGLATDGKILYGSDGTS 126 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEEC-----------------------------C-SSSCCEEEECSSSEEEECSSS
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEEC-----------------------------C-CCCeEEEEECCCEEEEECCCC
Confidence 6 44555688999999998876655432 1 011133555555566666789
Q ss_pred eEEEEEcCcchhhhhccccc-c---ccEEEEEEecCCeEEEE-eCCCeEEEEEccccccccccccceeeeeEeecc----
Q 038568 163 SFKIWNASNYKCLESVNKAH-E---DAVNAVVVSDNGVVYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVKH---- 233 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---- 233 (357)
.|.++|..+.+.+..+.... . ..++.+.+. ++++.+. ..++.|.+.|.. ..+.+..+...
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~----------tg~V~~~I~~~g~~~ 195 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK----------DGTLLGWILLPNLRK 195 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT----------TCCEEEEEECHHHHH
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC----------CCcEEEEEECCCccc
Confidence 99999999988877773221 1 236788888 6765444 467899999998 23333333211
Q ss_pred ---------ccceeEEEEecCCC-EEEEEecCCeEEEEecccC
Q 038568 234 ---------RSTVNALALNGDGS-LLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 234 ---------~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 266 (357)
....+.++|+|+++ +++++...+.+.+.++...
T Consensus 196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 13468999999886 4555657888999988754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-07 Score=84.33 Aligned_cols=195 Identities=12% Similarity=0.142 Sum_probs=116.5
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCC-------Cce-EEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-------GSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-------~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+..+++++.+ .|..+|. .+++.+-.+....... ..+ ..+++..+.++.++.|+.|..+|..+++..-...
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 6677777778 9999999 8888877665311000 001 2234455568888999999999999998765544
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEec------CCeEEEEEcCcchhhhhccccc-
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSW------DRSFKIWNASNYKCLESVNKAH- 182 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~- 182 (357)
....... +.....++ .....++.+.. +|.|..+|.++++.+..+....
T Consensus 145 ~~~~~~~---------------------~~~~~~P~----v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 199 (668)
T 1kv9_A 145 TTDPAKP---------------------YSITGAPR----VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG 199 (668)
T ss_dssp CSCTTSS---------------------CBCCSCCE----EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred cCCCCCc---------------------ceecCCCE----EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC
Confidence 3110000 00001111 12345555543 5889999999998877662110
Q ss_pred -----------------------------cccEEEEEEecCC-eEEEEeCCC-------------------eEEEEEccc
Q 038568 183 -----------------------------EDAVNAVVVSDNG-VVYTGSADG-------------------RIRVWERSV 213 (357)
Q Consensus 183 -----------------------------~~~v~~~~~~~~~-~l~~~~~d~-------------------~i~i~d~~~ 213 (357)
......+++.|+. .++.+..++ .|..+|.++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t 279 (668)
T 1kv9_A 200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT 279 (668)
T ss_dssp CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred CCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC
Confidence 0111246777754 677776665 388888872
Q ss_pred cccccccccceeeeeEeec--cc-------cceeEEEEecCCC---EEEEEecCCeEEEEecccCCce
Q 038568 214 VDHNKERKSRHMLVTTLVK--HR-------STVNALALNGDGS---LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.+.+-.+.. |. .+.....+..+|+ .++.++.+|.++++|..+++.+
T Consensus 280 ----------G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 280 ----------GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp ----------CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred ----------CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 223322221 21 2222233334665 6889999999999999998865
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-07 Score=70.41 Aligned_cols=185 Identities=9% Similarity=-0.030 Sum_probs=120.1
Q ss_pred ccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 221 (357)
.-...+.|+. .++.+.+.+|.|+++|+++++.+..+ ......-..+++..+...+..-.++.+.+||..
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~--------- 124 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGM--------- 124 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETT---------
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECC---------
Confidence 3456788888 66777788899999999999988876 333322344666555445556678999999987
Q ss_pred cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc---ceEEEeecCc-eEEEecC
Q 038568 222 SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG---ALLCLINVGD-LLASGSA 297 (357)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~l~~~~~ 297 (357)
..+.+.++... ..-..++ ++++.|+.+..++.|.++|..+.+....+.... +.. .+..+.|... ..+..-.
T Consensus 125 -Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~dG~lyanvw~ 199 (268)
T 3nok_A 125 -PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECANGVIYANIWH 199 (268)
T ss_dssp -TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEETTEEEEEETT
T ss_pred -cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEeCCEEEEEECC
Confidence 34455555432 2223444 567888888789999999999887554443322 222 2345566544 4444446
Q ss_pred CCeEEEeeCCCCcceeeeeee----------cCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 298 DRTVRIWQRGKENCYRCMAFL----------EGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
++.|.+.|..+++....+..- ..-..-.++|+++|+.+ ++++||-
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~------rlfVTGK 254 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG------RIFMTGK 254 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC------CEEEEET
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC------EEEEeCC
Confidence 889999999998543333321 01124578999999866 3677764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-07 Score=69.44 Aligned_cols=186 Identities=10% Similarity=0.014 Sum_probs=115.5
Q ss_pred cEEEEEEec-CeEEEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccc
Q 038568 144 AVSDLVVKQ-GLMYSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
-...+.|+. .++.+.+.+| .|+++|+++++.+..+.......-..++...+...+..-.++.+.+||..
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~-------- 115 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR-------- 115 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT--------
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc--------
Confidence 346778877 5556666665 89999999999888873322222234555444334555568999999987
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc-CCc-cceEEEeecCc-eEEEecC
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW-GHT-GALLCLINVGD-LLASGSA 297 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~-~l~~~~~ 297 (357)
..+.+.++.... ....++++++.|+.+..++.|.++|..+.+....+.... +.. ..+..+.+... ..+..-.
T Consensus 116 --t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 116 --NLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp --TCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred --cCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 344555554322 223444677777777778889999999877554443321 111 22334555444 4455556
Q ss_pred CCeEEEeeCCCCcceeeeee--ec-------CCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 298 DRTVRIWQRGKENCYRCMAF--LE-------GHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~--~~-------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
++.|.+.|..+++....+.. +. .-....++|+|+|+.+ ++++||-
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~------~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH------RLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT------EEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC------EEEEECC
Confidence 88999999999854433332 11 1123568999999877 4566653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=66.59 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=116.6
Q ss_pred ccEEEEEEec-CeEEEEecC--CeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWD--RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
.-...+.|++ .++.+.+.+ +.|+.+|+.+++.+..+.......-..++...+......-.++.+.+||..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~------- 93 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA------- 93 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-------
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC-------
Confidence 4566888988 445555554 489999999999888773222222234555544345556678999999987
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc---cceEEEeecCc-eEEEe
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT---GALLCLINVGD-LLASG 295 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~-~l~~~ 295 (357)
..+.+.++..... ...+.+++..|+.+..++.|.++|..+.+....+..-. +. ..+..+.+.+. ..+..
T Consensus 94 ---tl~~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 94 ---TLTPRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp ---TTEEEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEETTEEEEEE
T ss_pred ---cCcEEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEeCCEEEEEE
Confidence 3445555543222 23334667777777778999999999877554443321 22 22345566554 44444
Q ss_pred cCCCeEEEeeCCCCcceeeeeeec----------CCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLE----------GHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
-.+..|.+.|..+++....+..-. .-..-.++|+++|+.+ ++++||-
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~------~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD------RLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT------EEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC------EEEEECC
Confidence 467799999999985433332110 1123578999999876 4666663
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-05 Score=65.44 Aligned_cols=277 Identities=8% Similarity=-0.050 Sum_probs=146.9
Q ss_pred ccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccc-cCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 29 HMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSND-LSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
...+.+|.|. +..+++ +.+ .| +... +.++.-...... ......+.+|.|.++.++.++.++.|.. ..+.++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~-DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METR-DGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEES-STTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeC-CCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC
Confidence 4579999997 555664 445 54 3333 444433332210 0134578999998866555666675443 3333443
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (357)
...+.... .+...+..+.+.+ ..++.++.+|.|..- ...++.-........
T Consensus 111 W~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~ 162 (327)
T 2xbg_A 111 WSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAI 162 (327)
T ss_dssp CEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCC
T ss_pred ceECcccc---------------------------CCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCC
Confidence 33322110 1223355666655 545555556654321 122332222223345
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEE-EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVW-ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
..+..+.+.+++.++..+.+|.+..- |-. ....+.+. ......+..+.+.++++.++ ++.+|.+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--------G~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--------QTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD 231 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTT--------CSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCC--------CCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEec
Confidence 57889999998865555556655433 310 01222221 23445678899999887554 45678887764
Q ss_pred cccCCceeeeeec-cCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 263 RERDHRMVFAEAL-WGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
.+.++........ ......+..+.+.++ .++.++.+|.| ++....++.+..+.........+.++.|.+++
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~------ 304 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD------ 304 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT------
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC------
Confidence 3323322222111 112234677777654 44445557766 45556565555444322334567889898655
Q ss_pred eEEEEEcCCCCeEEecC
Q 038568 341 IVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~~~dg~v~~wd 357 (357)
.++.++.+|.|.-++
T Consensus 305 --~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 305 --QGFILGQKGILLRYV 319 (327)
T ss_dssp --EEEEECSTTEEEEEC
T ss_pred --ceEEEcCCceEEEEc
Confidence 466666789887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-06 Score=76.64 Aligned_cols=269 Identities=11% Similarity=0.089 Sum_probs=147.2
Q ss_pred EEEecceEEEeeCC-ceEEEeccCCccccceeccccCC-CCceEE-EEEecCceEEeec------CCeEEEEecCCccce
Q 038568 35 LAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-SGSVKS-ITFHITKIFTAHQ------DCKIRVWKITASRQH 105 (357)
Q Consensus 35 ~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~-l~~~~~~l~~~~~------d~~i~vwd~~~~~~~ 105 (357)
+++.+..+++++.| .|..+|. .+++.+-.+...... ...+.+ -....+.++.+.. +|.|..+|..+++..
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDA-KTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEET-TTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eEEECCEEEEEcCCCEEEEEEC-CCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 34456778888888 9999999 888888776541100 011111 1122344555543 589999999999876
Q ss_pred eeeeecCccccceeeeecCCCeEEEec---ccccccc--cccccEEEEEEec--CeEEEEecCC----------------
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRR---HKKRLWL--EHWDAVSDLVVKQ--GLMYSVSWDR---------------- 162 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~v~~~~~~~--~~l~~~~~dg---------------- 162 (357)
-.....+........ ...+.... .....|. +.......+++.+ ++++.++.++
T Consensus 192 W~~~~~~~~p~~~~~----~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l 267 (668)
T 1kv9_A 192 WRFYTVPGDPALPYE----HPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNL 267 (668)
T ss_dssp EEEESSCCCTTSCCS----SHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEecccCCCCCcccc----ccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 665542211100000 00000000 0000000 1112223467776 7777777665
Q ss_pred ---eEEEEEcCcchhhhhcccc-cc-------ccEEEEEEecCC----eEEEEeCCCeEEEEEcccccccccccc-----
Q 038568 163 ---SFKIWNASNYKCLESVNKA-HE-------DAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKERKS----- 222 (357)
Q Consensus 163 ---~i~iwd~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~----- 222 (357)
.|..+|.++++.+..++.. |. .+.....+..++ .++.++.+|.++++|..+++.......
T Consensus 268 ~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 347 (668)
T 1kv9_A 268 YLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTW 347 (668)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCS
T ss_pred eeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccc
Confidence 4999999999988777432 11 233333333455 388899999999999874332200000
Q ss_pred -------ceeeee------------Eeeccc--cceeEEEEecCCCEEEEEe----------------------------
Q 038568 223 -------RHMLVT------------TLVKHR--STVNALALNGDGSLLFSGG---------------------------- 253 (357)
Q Consensus 223 -------~~~~~~------------~~~~~~--~~v~~~~~~~~~~~l~~~~---------------------------- 253 (357)
...++. .+.+.. ..-..++++|+..++++..
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 000000 000000 0011267888766655421
Q ss_pred --------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 254 --------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 254 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+|.|..||+.+++......... ...-..+...+.+++.++.||.++.||.++++
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 24789999999987654333211 11113445567788899999999999999984
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.2e-06 Score=72.40 Aligned_cols=271 Identities=8% Similarity=-0.042 Sum_probs=139.9
Q ss_pred EEEecceEEEeeCC-ceEEEeccCCccccceeccccCCC--CceE-EEEEecCceEEeec------CCeEEEEecCCccc
Q 038568 35 LAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS--GSVK-SITFHITKIFTAHQ------DCKIRVWKITASRQ 104 (357)
Q Consensus 35 ~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~--~~v~-~l~~~~~~l~~~~~------d~~i~vwd~~~~~~ 104 (357)
+++.+..+++++.| .+..+|. .+++.+-.+.... +. ..+. .-....+.++.++. ++.|..+|..+++.
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~ 188 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDA-KTGKINWEVEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEET-TTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cEEECCEEEEEeCCCEEEEEEC-CCCCEEEEecCCC-CCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence 34457778888888 9999999 8888876655311 10 0111 11122344666654 78999999999987
Q ss_pred eeeeeecCccccceeeeecCCCeEEE--eccccccc-----ccccccE-EEEEEec--CeEEEEecC-------------
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTV--RRHKKRLW-----LEHWDAV-SDLVVKQ--GLMYSVSWD------------- 161 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~v-~~~~~~~--~~l~~~~~d------------- 161 (357)
.-........................ .......| ..-...+ ..+++.+ ..++.+..+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 66554432110000000000000000 00000000 0000011 1234444 455555432
Q ss_pred ---CeEEEEEcCcchhhhhccccc---------cccEEEEEEecCC---e-EEEEeCCCeEEEEEccccccccccccc--
Q 038568 162 ---RSFKIWNASNYKCLESVNKAH---------EDAVNAVVVSDNG---V-VYTGSADGRIRVWERSVVDHNKERKSR-- 223 (357)
Q Consensus 162 ---g~i~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~~-- 223 (357)
+.|..+|.++++.+..++..+ ..++. +....+| . ++.++.+|.+.++|..+.+........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 369999999999877763221 12221 2222466 2 667888999999998743321110000
Q ss_pred -----------eeeee--------------Eeeccc--cceeEEEEecCCCEEEEEe-----------------------
Q 038568 224 -----------HMLVT--------------TLVKHR--STVNALALNGDGSLLFSGG----------------------- 253 (357)
Q Consensus 224 -----------~~~~~--------------~~~~~~--~~v~~~~~~~~~~~l~~~~----------------------- 253 (357)
..++. ...... ..-..++++|+..++++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 00000 000000 0002467888777776654
Q ss_pred --------------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 254 --------------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 254 --------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+|.|..||+.+++.......... ..-..+...+..++.++.||.|+.+|.++++
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 357899999998875443332111 1111223346677789999999999999984
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-06 Score=64.57 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=125.2
Q ss_pred cceecccccCCCCCCCccc--eeEEEEe-cceEEEeeC--C-ceEEEeccCCccccceeccccCCCCc-eEEEEEecCce
Q 038568 13 KHHCIASLKIPSPDPHHMI--ISCLAVH-NSLLYAASL--N-EINVFDLISDYSHVDTFSNDLSSSGS-VKSITFHITKI 85 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~--i~~~~~s-~~~l~t~~~--d-~i~iw~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~l 85 (357)
..+.++++. |... ...|.|+ +.++.+.+. . .|+++|+ ++++.++.+.. .... -..++...+.|
T Consensus 30 ~~~vv~~~p------hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~-~Tgkv~~~~~l---~~~~FgeGit~~g~~l 99 (262)
T 3nol_A 30 DYQIVHSYP------HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDI-ESGKTLQQIEL---GKRYFGEGISDWKDKI 99 (262)
T ss_dssp EEEEEEEEE------CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECT-TTCCEEEEEEC---CTTCCEEEEEEETTEE
T ss_pred ceEEEEEec------CCCCcccceEEEECCEEEEECCCCCCceEEEEEC-CCCcEEEEEec---CCccceeEEEEeCCEE
Confidence 456666665 6544 5889999 655555553 2 8999999 99999888864 2222 23466666764
Q ss_pred E-EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 86 F-TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 86 ~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
+ ..-.++.+.++|..+.+....+... + .=..+++..+.|+.+..++.|
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~----------------------------~---eG~glt~dg~~L~~SdGs~~i 148 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYD----------------------------G---EGWGLTHNDQYLIMSDGTPVL 148 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECS----------------------------S---CCCCEEECSSCEEECCSSSEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECC----------------------------C---CceEEecCCCEEEEECCCCeE
Confidence 4 4446889999999998876665431 1 113445555666666667889
Q ss_pred EEEEcCcchhhhhccccc-c---ccEEEEEEecCCeEEEEe-CCCeEEEEEccccccccccccceeeeeEeec-------
Q 038568 165 KIWNASNYKCLESVNKAH-E---DAVNAVVVSDNGVVYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVK------- 232 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------- 232 (357)
.++|..+.+.+..+.... . ..++.+.+. +|++.+.. .++.|.+.|.+++ +.+..+..
T Consensus 149 ~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG----------~V~~~Id~~~L~~~~ 217 (262)
T 3nol_A 149 RFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG----------KVTGIIDLNGILAEA 217 (262)
T ss_dssp EEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC----------BEEEEEECTTGGGGS
T ss_pred EEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC----------cEEEEEECCcCcccc
Confidence 999999988887773211 1 335567776 67654444 6889999998832 22222221
Q ss_pred -----cccceeEEEEecCCCEEEEEecC
Q 038568 233 -----HRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 233 -----~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
.....+.|+|+|+++.|++.+..
T Consensus 218 ~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 218 GPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 12356899999988877776653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-05 Score=64.73 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=129.6
Q ss_pred eEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC-c-e-EEeecCCeEEEEecCCccceeee
Q 038568 33 SCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K-I-FTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 33 ~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~-l-~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+|.+.. ..+|+.+....|+..++ +.......+. ....+..++|.+. + | ++-...+.|..++++.......+
T Consensus 80 ~C~~~~~~~~l~~~~~~~I~~i~~-~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 80 SCKALGPEPVLLFANRIDIRQVLP-HRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp CEEECSSCCEEEEECBSCEEEECT-TSCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred eECCccccceeEeecCccceeecc-CCCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 344444 44555554448888888 6544433333 3456789999964 3 4 44456788989988765422211
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcccccccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA 185 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (357)
. ........+++.+ .++++-...+.|.+.++........+ ...-..
T Consensus 155 ~------------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~ 203 (386)
T 3v65_B 155 S------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEK 203 (386)
T ss_dssp C------------------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSC
T ss_pred e------------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCC
Confidence 1 1112234566665 34445555678888887643322222 233356
Q ss_pred EEEEEEecCC-eEE-EEeCC-CeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEE-ecCCeEEE
Q 038568 186 VNAVVVSDNG-VVY-TGSAD-GRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSG-GCDRWIVV 260 (357)
Q Consensus 186 v~~~~~~~~~-~l~-~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v 260 (357)
...++++|.+ .|+ +-... +.|..+++. ......+ ...-.....|+++|++..|+.+ ...+.|..
T Consensus 204 P~giavdp~~g~ly~td~~~~~~I~r~~~d-----------G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 204 PRAIALHPMEGTIYWTDWGNTPRIEASSMD-----------GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272 (386)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETT-----------SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CcEEEEEcCCCeEEEeccCCCCEEEEEeCC-----------CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence 7899999855 544 43344 678888775 1111111 1223456899999866655554 45678999
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
+|+........... .......++...+ ++++-...+.|..++..+++
T Consensus 273 ~d~dG~~~~~~~~~---~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 273 ANLDGSHRKAVISQ---GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ECTTSCSCEEEECS---SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCeeEEEEEC---CCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 99875433222221 1222344444444 66666678889999866664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-06 Score=65.34 Aligned_cols=188 Identities=11% Similarity=0.143 Sum_probs=123.1
Q ss_pred eecccccCCCCCCCcc--ceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee
Q 038568 15 HCIASLKIPSPDPHHM--IISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~--~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~ 89 (357)
+.++++. |.. ....|.|+ +.++.+.+.+ .|+++|+ ++++.++.+ . +...--..+++..+. .+..-
T Consensus 44 ~Vv~~~p------hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~-~Tgkv~~~~-l--~~~~FgeGit~~g~~Ly~ltw 113 (268)
T 3nok_A 44 HIIREYP------HATNAFTQGLVFHQGHFFESTGHQGTLRQLSL-ESAQPVWME-R--LGNIFAEGLASDGERLYQLTW 113 (268)
T ss_dssp EEEEEEE------CCTTCCEEEEEEETTEEEEEETTTTEEEECCS-SCSSCSEEE-E--CTTCCEEEEEECSSCEEEEES
T ss_pred EEEEEEc------CCCccccceEEEECCEEEEEcCCCCEEEEEEC-CCCcEEeEE-C--CCCcceeEEEEeCCEEEEEEc
Confidence 4556665 543 45789999 5555566666 9999999 999988887 3 122222456777777 44455
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEc
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~ 169 (357)
.++.+.+||..+.+....+... ..=..+++..+.|+.+..++.|.++|.
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~-------------------------------~eGwGLt~Dg~~L~vSdGs~~l~~iDp 162 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYS-------------------------------GEGWGLCYWNGKLVRSDGGTMLTFHEP 162 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECS-------------------------------SCCCCEEEETTEEEEECSSSEEEEECT
T ss_pred cCCEEEEEECCcCcEEEEEeCC-------------------------------CceeEEecCCCEEEEECCCCEEEEEcC
Confidence 6899999999998776665431 112455555666666667899999999
Q ss_pred Ccchhhhhcccc-cc---ccEEEEEEecCCeEEEEe-CCCeEEEEEccccccccccccceeeeeEeec------------
Q 038568 170 SNYKCLESVNKA-HE---DAVNAVVVSDNGVVYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVK------------ 232 (357)
Q Consensus 170 ~~~~~~~~~~~~-~~---~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------------ 232 (357)
.+.+.+.++... .. ..++.+.|. +|++.+.. .++.|.+.|.++. +.+..+..
T Consensus 163 ~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG----------~V~~~Idl~~L~~~~~~~~~ 231 (268)
T 3nok_A 163 DGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG----------TVVGVIDASALTRAVAGQVT 231 (268)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC----------BEEEEEECHHHHHHHTTTCC
T ss_pred CCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC----------cEEEEEECCCCccccccccc
Confidence 998888777321 11 245677777 66654444 6889999998832 22222221
Q ss_pred -cccceeEEEEecCCCEEEEEec
Q 038568 233 -HRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 233 -~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
...-.+.|+++|+++.|++.+.
T Consensus 232 ~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 232 NPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTCCEEEEEECTTTCCEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEeCC
Confidence 1235689999997765555443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-07 Score=73.33 Aligned_cols=223 Identities=9% Similarity=0.096 Sum_probs=123.6
Q ss_pred CccceeEEEEe--cceEEEeeC-----C-ceEEEeccCCccccceeccc---cCCCCceEEEEEecC-c--eEEee---c
Q 038568 28 HHMIISCLAVH--NSLLYAASL-----N-EINVFDLISDYSHVDTFSND---LSSSGSVKSITFHIT-K--IFTAH---Q 90 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~-----d-~i~iw~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~-~--l~~~~---~ 90 (357)
|-..+.+++++ ++++++-.. + .|.+||+ .+++.+..+... ..+...+..+++.++ + +++.. .
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~-~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT-LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET-TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC-CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 66789999999 555554433 5 9999999 877766666431 113345789999975 3 45544 6
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCe-EEEecccccccccccccEEEEEEec--CeEEEEecCC-eEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY-VTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR-SFKI 166 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg-~i~i 166 (357)
++.|.+||+.+++....+...+...... .....++. +......... ......+..++++| +.|+.+..++ .+..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~-~~~~~~g~~~~~~~~~g~~-~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPED-IDLVIDGVPVQIGQPDGTV-IRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCS-CCCEETTEECBEECTTSCE-ECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccc-cceeECCEEEEeccCCCce-eceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 7899999998776543332100000000 00000010 0000000000 00113467899999 5777777665 4444
Q ss_pred EEcCc--------chhhhhcc-ccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 167 WNASN--------YKCLESVN-KAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 167 wd~~~--------~~~~~~~~-~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
++... .+....+. .++......++++++|. +++...++.|.+||.. .+ ....+.. ..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~------~G--~~~~~~~-~~~~~~ 292 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA------DR--AYKLLVT-DEKLSW 292 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT------TT--EEEEEEE-CGGGSC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC------CC--CEEEEEE-CCceec
Confidence 44321 11111111 12333556789999985 6666678899999983 11 1111111 112456
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
+.+++|.++++++++.+..+.+.+|.
T Consensus 293 p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCeeEECCCCcEEEEeCccccccccc
Confidence 88999999988887777655554443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-05 Score=60.33 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=124.2
Q ss_pred ccceecccccCCCCCCCc--cceeEEEEe-cceEEEeeC--C-ceEEEeccCCccccceeccccCCCC-ceEEEEEecCc
Q 038568 12 FKHHCIASLKIPSPDPHH--MIISCLAVH-NSLLYAASL--N-EINVFDLISDYSHVDTFSNDLSSSG-SVKSITFHITK 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~--~~i~~~~~s-~~~l~t~~~--d-~i~iw~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~ 84 (357)
...+.++++. |. .....+.|+ +.++.+.+. . .|+.+|+ ++++.++.+.. ... --..++...+.
T Consensus 7 ~~~~v~~~~p------hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~-~tgkv~~~~~l---~~~~fgeGi~~~~~~ 76 (243)
T 3mbr_X 7 QGYRVVKRYP------HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDL-ETGRILQRAEV---PPPYFGAGIVAWRDR 76 (243)
T ss_dssp CCEEEEEEEE------CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEET-TTCCEEEEEEC---CTTCCEEEEEEETTE
T ss_pred cceEEEEEcC------CCCccccccEEEECCEEEEECCCCCCceEEEEEC-CCCCEEEEEeC---CCCcceeEEEEeCCE
Confidence 3455666664 54 456799999 555555554 3 8999999 99999888764 222 12345666666
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCe
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRS 163 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 163 (357)
....-.++.+.++|..+.+....+... + .=..++.....|+.+..++.
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~----------------------------~---~Gwglt~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYP----------------------------G---EGWALTSDDSHLYMSDGTAV 125 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECS----------------------------S---CCCEEEECSSCEEEECSSSE
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCC----------------------------C---CceEEeeCCCEEEEECCCCe
Confidence 444556899999999988766655431 1 12455555566666667899
Q ss_pred EEEEEcCcchhhhhcccc-cc---ccEEEEEEecCCeEEEE-eCCCeEEEEEccccccccccccceeeeeEee-------
Q 038568 164 FKIWNASNYKCLESVNKA-HE---DAVNAVVVSDNGVVYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLV------- 231 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------- 231 (357)
|.++|..+.+.+.++... +. ..++.+.+. +|++.+. -.+..|.+.|.++++ .+..+.
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~----------V~~~idl~~l~~~ 194 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK----------VVAWIDLQALVPD 194 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB----------EEEEEECGGGSTT
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC----------EEEEEECCcCccc
Confidence 999999998888777322 11 345667766 6664444 467899999988322 222221
Q ss_pred ------ccccceeEEEEecCCCEEEEEec
Q 038568 232 ------KHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 232 ------~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
....-.+.|+++|+++.|++.+.
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 11235689999998776666654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-05 Score=61.94 Aligned_cols=231 Identities=14% Similarity=0.078 Sum_probs=132.0
Q ss_pred cceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC-c-eE-EeecCCeEEEEecCCccce
Q 038568 30 MIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K-IF-TAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 30 ~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~-l~-~~~~d~~i~vwd~~~~~~~ 105 (357)
+..+|.+.. ..+|+.+....|+..++ +.......+. ....+..++|.+. + |+ +-...+.|..++++.....
T Consensus 34 d~~~C~~~~~~~~ll~~~~~~I~~i~~-~g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFANRIDIRQVLP-HRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TSSCEEESSSCCEEEEECBSCEEEECT-TSCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCcccccccCceeEeecccceEEEeC-CCCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 345566555 44555554447888888 5544333333 3445789999964 3 44 4446788988988765432
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
..+. ........+++.+ .++++-...+.|.+.++.... ...+....
T Consensus 109 ~~~~------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~ 157 (349)
T 3v64_C 109 EVVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQS 157 (349)
T ss_dssp EEEC------------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTT
T ss_pred EEEe------------------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCC
Confidence 2211 1112335667765 344555556789999886433 22221233
Q ss_pred cccEEEEEEecC-CeE-EEEeCC-CeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEe-cCCe
Q 038568 183 EDAVNAVVVSDN-GVV-YTGSAD-GRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGG-CDRW 257 (357)
Q Consensus 183 ~~~v~~~~~~~~-~~l-~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 257 (357)
-.....++++|. +.| ++-... +.|..+++.. .....+ ...-.....|+++|++..|+.+. ..+.
T Consensus 158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-----------~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-----------SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----------CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-----------CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 356789999985 454 444444 7888888751 111111 12234568999998666665554 5678
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
|..+|+...........- ......++...+ .+++-...+.|..++..+++
T Consensus 227 I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 227 IERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 999998754332222211 122334444444 55666667888888866654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-06 Score=74.50 Aligned_cols=223 Identities=12% Similarity=0.093 Sum_probs=126.0
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE-e-c--CeEEEEe-
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-K-Q--GLMYSVS- 159 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~--~~l~~~~- 159 (357)
+++...++.|.+.|+.+.+....+ .++. ......+++ . | +++++++
T Consensus 105 fVnd~~~~rVavIdl~t~~~~~ii-~ip~----------------------------g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 105 FMNDKANTRVARVRCDVMKCDAIL-EIPN----------------------------AKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE-ECSS----------------------------CCSEEEEEECCSSBCSEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCceEeeEE-eCCC----------------------------CCCCcceeeeecCCCcEEEEecc
Confidence 556666778999999998766655 3321 123445554 2 4 5555553
Q ss_pred -----------------cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCC---------------CeE
Q 038568 160 -----------------WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD---------------GRI 206 (357)
Q Consensus 160 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---------------~~i 206 (357)
.++.+.+.|..+.+.+.++..+ . ....++++|+| ++++.+.+ ..|
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-g-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-G-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES-S-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC-C-CccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 3457888999888877777221 2 34567788888 44444433 234
Q ss_pred EEEEccccccc-ccc--------------ccceee-eeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCce
Q 038568 207 RVWERSVVDHN-KER--------------KSRHML-VTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRM 269 (357)
Q Consensus 207 ~i~d~~~~~~~-~~~--------------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 269 (357)
.++|....... +.+ ...... +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+..
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 55554321100 000 000111 11221 122456799999999877766 5889999999865310
Q ss_pred ---------eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC-------cceeeeeeecCCcCce-----E
Q 038568 270 ---------VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE-------NCYRCMAFLEGHEKPV-----K 326 (357)
Q Consensus 270 ---------~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~h~~~v-----~ 326 (357)
........ ......++|+++ ...+...|+.|.+||+.+. +..+.+..+..|-.+- .
T Consensus 313 ~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~ 391 (595)
T 1fwx_A 313 FYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVM 391 (595)
T ss_dssp HHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETT
T ss_pred cccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceecc
Confidence 01112211 223456677665 5566778999999999762 1134566666664432 1
Q ss_pred EEEEeeCCCCCCCCeEEEEEc
Q 038568 327 SLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~ 347 (357)
++..+||++ +|+++
T Consensus 392 g~t~~~DGk-------~l~~~ 405 (595)
T 1fwx_A 392 GETLDATND-------WLVCL 405 (595)
T ss_dssp TTSTTCCSS-------EEEEE
T ss_pred ceEeCCCCC-------EEEEc
Confidence 223467776 66655
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-05 Score=65.57 Aligned_cols=237 Identities=11% Similarity=0.101 Sum_probs=130.6
Q ss_pred eeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc-----------------CCCCceEEEEEec-Cc-eEEee
Q 038568 32 ISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-----------------SSSGSVKSITFHI-TK-IFTAH 89 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~~~-~~-l~~~~ 89 (357)
..+++++ +++++++..+ .|..|+. .+++ +..+.... .....+..+++.+ ++ |+.+.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEG-PNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECC-TTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECC-CCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567787 6778888888 9999988 5533 22222100 0123578999997 55 77776
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe--------
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-------- 159 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------- 159 (357)
..+.|..+|..++........... ........+++.+ ..+..+.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~--------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDG--------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETT--------------------------EECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred CCCCEEEEeCCCCEEEEecccCCC--------------------------CcccccceEEEecCCCEEEEECCccccccc
Confidence 666688888765432111111000 0112345566654 2333332
Q ss_pred ----------cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEE-eCCCeEEEEEccccccccccccceeee
Q 038568 160 ----------WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTG-SADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 160 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
.++.|..+|..+++..... ........++++|++ .|+++ ...+.|..|++.... .......
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-----~~~~~~~ 225 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-----KGTAEVL 225 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-----TTCEEEE
T ss_pred ccceehcccCCCceEEEEeCCCCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-----CCccceE
Confidence 2367888887655432211 122345678999998 35444 566899999986211 0011111
Q ss_pred eEeeccccceeEEEEecCCCEEEEEec----------CCeEEEEecccCCceeeeeeccCC-ccceEEEeecCc-eEEEe
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGH-TGALLCLINVGD-LLASG 295 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~~~ 295 (357)
.. ..+ ...++++++|++.++... .+.|..+|.. ++....+....+. -..+..+.+... ++++.
T Consensus 226 ~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~ 300 (322)
T 2fp8_A 226 VK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300 (322)
T ss_dssp EE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred Ee---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence 11 123 678999999986666544 4678888875 4433333222211 123444444444 55555
Q ss_pred cCCCeEEEeeCCC
Q 038568 296 SADRTVRIWQRGK 308 (357)
Q Consensus 296 ~~dg~i~vw~~~~ 308 (357)
..++.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 5678898888764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-05 Score=64.88 Aligned_cols=244 Identities=14% Similarity=0.101 Sum_probs=130.7
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
...+++|.+++ ++++..++.|..|+..+++.. .+.......... ...+ ...............+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~----~~~g------~~~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKA----FCEN------STDAEKRPLCGRTYDISYN 88 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHH----HHTT------CCCGGGHHHHCCEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEeccccccccc----cccc------ccchhccccCCCCceEEEc
Confidence 44568888765 778888899999988765422 111100000000 0000 0000000112346788888
Q ss_pred c--CeEEEEecCCeEEEEEcCcchhhhhccc----cccccEEEEEEec-CCeEEEEeC------------------CCeE
Q 038568 152 Q--GLMYSVSWDRSFKIWNASNYKCLESVNK----AHEDAVNAVVVSD-NGVVYTGSA------------------DGRI 206 (357)
Q Consensus 152 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~l~~~~~------------------d~~i 206 (357)
+ ..|+.+...+.|..+|..+++. ..+.. ........+++.+ +|.+..+.. ++.|
T Consensus 89 ~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 89 LQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 5 6677776666788888775532 12201 1123467899999 886555432 3667
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCC--ceeeeeeccCCccceE
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDH--RMVFAEALWGHTGALL 283 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~ 283 (357)
..||.. . ... ..+.........++++|+++.|+.+ ..++.|.+|++.... ....+..+. + ..
T Consensus 168 ~~~d~~------~----~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~ 232 (322)
T 2fp8_A 168 IKYDPS------T----KET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---N-PG 232 (322)
T ss_dssp EEEETT------T----TEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---S-EE
T ss_pred EEEeCC------C----CEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---C-CC
Confidence 788764 1 111 1111112345679999999866655 556899999987532 111222222 2 44
Q ss_pred EEeecCc--eEEEecC----------CCeEEEeeCCCCcceeeeeeecCC----cCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 284 CLINVGD--LLASGSA----------DRTVRIWQRGKENCYRCMAFLEGH----EKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 284 ~~~~~~~--~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
.++.+++ +.++... .+.|..+|.. + +.+..+... ...++++++ .++. ++++.
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-------L~v~~ 300 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-------LYIGT 300 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-------EEEEC
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-------EEEee
Confidence 4555554 4333332 4668888764 4 223333222 234667766 4554 66666
Q ss_pred CCCCeEEec
Q 038568 348 SLNGEIKVW 356 (357)
Q Consensus 348 ~~dg~v~~w 356 (357)
...+.|..+
T Consensus 301 ~~~~~i~~~ 309 (322)
T 2fp8_A 301 LFHGSVGIL 309 (322)
T ss_dssp SSCSEEEEE
T ss_pred cCCCceEEE
Confidence 667777665
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-05 Score=68.09 Aligned_cols=287 Identities=9% Similarity=-0.010 Sum_probs=147.7
Q ss_pred EEecceEEEeeCC-ceEEEeccCCccccceeccccCC-CCceE-EEEEecC------ceEEee------cCCeEEEEecC
Q 038568 36 AVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-SGSVK-SITFHIT------KIFTAH------QDCKIRVWKIT 100 (357)
Q Consensus 36 ~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-~~~v~-~l~~~~~------~l~~~~------~d~~i~vwd~~ 100 (357)
++.+..++.++.| .|..+|. .+++.+-........ ...+. .-....+ .+++++ .++.|.-+|..
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~-~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNK-NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp EEETTEEEEEETTTEEEEEES-SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred EEECCEEEEEeCCCEEEEEEC-CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 4456778888888 9999999 888887665531100 00111 1112234 455554 37899999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEe--ccccccccc---------------ccccEEEEEEec--CeEEEEec-
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVR--RHKKRLWLE---------------HWDAVSDLVVKQ--GLMYSVSW- 160 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~v~~~~~~~--~~l~~~~~- 160 (357)
+++..-....... ..... .+..... ......|.. ....-...++.+ ++++.+..
T Consensus 193 tG~~~W~~~~~~~----~~~p~--~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn 266 (582)
T 1flg_A 193 TGEEIWMRPFVEG----HMGRL--NGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGN 266 (582)
T ss_dssp TCCEEEEEESSTT----CEEEE--TTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECC
T ss_pred CCCEEeecCCCcc----ccccc--cCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCC
Confidence 9886553322100 00000 0000000 000001100 000112345555 56665552
Q ss_pred -------------------C----CeEEEEEcCcchhhhhcccccc---------ccEEEEEEe-cCC----eEEEEeCC
Q 038568 161 -------------------D----RSFKIWNASNYKCLESVNKAHE---------DAVNAVVVS-DNG----VVYTGSAD 203 (357)
Q Consensus 161 -------------------d----g~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~-~~~----~l~~~~~d 203 (357)
| +.|..+|.++++.+..++..+. .++. +... .+| .++.++.+
T Consensus 267 ~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~ 345 (582)
T 1flg_A 267 PGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRN 345 (582)
T ss_dssp BSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTT
T ss_pred CCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCC
Confidence 2 6899999999998887743221 1221 1221 355 47788999
Q ss_pred CeEEEEEccccccccccccc-------------eeeee--------------------Eeecccc--ceeEEEEecCCCE
Q 038568 204 GRIRVWERSVVDHNKERKSR-------------HMLVT--------------------TLVKHRS--TVNALALNGDGSL 248 (357)
Q Consensus 204 ~~i~i~d~~~~~~~~~~~~~-------------~~~~~--------------------~~~~~~~--~v~~~~~~~~~~~ 248 (357)
|.++++|.++.+........ .+++. ......+ .-..++++|+..+
T Consensus 346 G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~ 425 (582)
T 1flg_A 346 GFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGL 425 (582)
T ss_dssp SEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCC
T ss_pred ceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCE
Confidence 99999998744322110000 00000 0000000 0124567776555
Q ss_pred EEEEe---------------------------------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 249 LFSGG---------------------------------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 249 l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
+++.. .+|.|..||+.+++............. ..+...+.+++.+
T Consensus 426 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--g~~~tagglvf~g 503 (582)
T 1flg_A 426 FYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA--GVLATAGNLVFTG 503 (582)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS--CCEEETTTEEEEE
T ss_pred EEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc--cceEeCCCEEEEE
Confidence 54432 268899999999886543332111111 1233456688889
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCce-EEEEEeeCCC
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPV-KSLVAISSSS 335 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~ 335 (357)
+.||.++.||.++++ .+-.++.....+ .-+.+..+++
T Consensus 504 ~~dg~l~A~D~~tG~---~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 504 TGDGYFKAFDAKSGK---ELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCcEEEEECCCCC---EEEEecCCCCcccCceEEEECCE
Confidence 999999999999984 444444322211 2255666765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=73.51 Aligned_cols=250 Identities=9% Similarity=0.063 Sum_probs=145.0
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeE-----------EEecccccccccccccEEEEEEec-
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYV-----------TVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
|.+|+..|.++|+-+.+.+.+..+..+......--........+ .+.......+.--...-..+.+..
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 88999999999999999998888877653321100000000000 000111101111111114555522
Q ss_pred ----CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEE-e-cCC-eEEEEe------------------CCCeE
Q 038568 153 ----GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV-S-DNG-VVYTGS------------------ADGRI 206 (357)
Q Consensus 153 ----~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~-~l~~~~------------------~d~~i 206 (357)
++++ +...++.|.+.|+.+.++...+..........+++ . |++ ++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 4444 44456789999999998777442244456778887 4 777 566663 34578
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC------------------------------
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR------------------------------ 256 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------ 256 (357)
.++|.. ..+...++.-.. ....++++|+|+++++.+.+.
T Consensus 178 tvID~~----------t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 178 TAVDAD----------KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEETT----------TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEECC----------CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 888877 333444443222 346788999999998888653
Q ss_pred --------eEEEEeccc--CCc-eeeeeeccCCccceEEEeecC--c-eEEEecCCCeEEEeeCCCCcc---------ee
Q 038568 257 --------WIVVWERER--DHR-MVFAEALWGHTGALLCLINVG--D-LLASGSADRTVRIWQRGKENC---------YR 313 (357)
Q Consensus 257 --------~i~vwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vw~~~~~~~---------~~ 313 (357)
.|.|.|..+ +.. ...+.. + ....++.++| + .++++..+.+|.++|+.+.+. ..
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g--~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI--A--NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE--E--SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec--C--CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 244445444 211 111111 1 1122344444 4 566666789999999996421 01
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....... ......++|+|++. ..++.-.|++|.+||
T Consensus 323 v~~~v~v-G~gP~h~aF~~dG~-------aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 323 VVAEPEL-GLGPLHTAFDGRGN-------AYTSLFLDSQVVKWN 358 (595)
T ss_dssp EEECCBC-CSCEEEEEECTTSE-------EEEEETTTTEEEEEE
T ss_pred eEEEcCC-CCCcceEEECCCCe-------EEEEEecCCcEEEEE
Confidence 2333332 34578899999986 778888999999996
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-05 Score=70.68 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=107.4
Q ss_pred cceEEEeeC-C-ceEEEeccCCccccceeccccCCC--------CceEEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 39 NSLLYAASL-N-EINVFDLISDYSHVDTFSNDLSSS--------GSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~~-d-~i~iw~~~~~~~~~~~~~~~~~~~--------~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..+++++. + .|.-+|...+++.+-.+....... ..-..++...+.++.++.|+.+..+|..+++..-..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 566666666 6 888888622556655544210000 001123445556888889999999999998865444
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEec------CCeEEEEEcCcchhhhhccccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSW------DRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
........ +.....++ .....++.++. ++.|..+|.++++.+.++....
T Consensus 142 ~~~~~~~~---------------------~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 196 (571)
T 2ad6_A 142 EVCDPKVG---------------------STLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG 196 (571)
T ss_dssp ECCCGGGT---------------------CBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred cCCCCCcc---------------------ceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCC
Confidence 32110000 00001111 12355555554 7899999999988776552111
Q ss_pred cc-------------------------------------cEEEEEEecC-CeEEEEeCC----------------CeEEE
Q 038568 183 ED-------------------------------------AVNAVVVSDN-GVVYTGSAD----------------GRIRV 208 (357)
Q Consensus 183 ~~-------------------------------------~v~~~~~~~~-~~l~~~~~d----------------~~i~i 208 (357)
.. ....+++.++ +.++.+..+ +.|..
T Consensus 197 ~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~A 276 (571)
T 2ad6_A 197 SDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWG 276 (571)
T ss_dssp CHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEE
T ss_pred CccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEE
Confidence 00 0013455654 355555432 35888
Q ss_pred EEccccccccccccceeeeeEee--cc--------ccceeEEEEecCCC---EEEEEecCCeEEEEecccCCcee
Q 038568 209 WERSVVDHNKERKSRHMLVTTLV--KH--------RSTVNALALNGDGS---LLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~--~~--------~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
+|.++ .+.+-.++ .| ..++. +....+|+ .++.++.+|.++++|..+++.+.
T Consensus 277 ld~~t----------G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 277 RDLDT----------GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp EETTT----------CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EecCC----------CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 88872 22222222 11 12221 22234674 67788899999999999887543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-05 Score=67.65 Aligned_cols=265 Identities=11% Similarity=0.006 Sum_probs=134.7
Q ss_pred EEEeeCC-ceEEEeccCCccccceeccccC-CCCceEE-EEEecCceEEee------cCCeEEEEecCCccceeeeeecC
Q 038568 42 LYAASLN-EINVFDLISDYSHVDTFSNDLS-SSGSVKS-ITFHITKIFTAH------QDCKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 42 l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~-l~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~ 112 (357)
|+.++.| .|..+|. .+++.+-....... ....+.+ -....+.++.++ .++.|.-+|..+++..-......
T Consensus 124 V~v~t~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEEC-CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 7788888 9999999 88888766543110 0001111 112234466655 37999999999998765554432
Q ss_pred ccccceeeee-cCCC------eEEEecccccccccccccE-EEEEEec--CeEEEEecC----------------CeEEE
Q 038568 113 TVKDRLIRSV-LPNN------YVTVRRHKKRLWLEHWDAV-SDLVVKQ--GLMYSVSWD----------------RSFKI 166 (357)
Q Consensus 113 ~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~l~~~~~d----------------g~i~i 166 (357)
.......... ..++ ...........+..-...+ ...++.+ ++++.+..+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 2100000000 0000 0000000000010001111 1234444 566666554 37999
Q ss_pred EEcCcchhhhhcccccc---------ccEEEEEEe-cCC---e-EEEEeCCCeEEEEEcccccccccccc----------
Q 038568 167 WNASNYKCLESVNKAHE---------DAVNAVVVS-DNG---V-VYTGSADGRIRVWERSVVDHNKERKS---------- 222 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~---------~~v~~~~~~-~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~---------- 222 (357)
+|.++++.+..++..+. .++. +... .+| . ++.++.+|.+.++|.++.+.......
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 99999998877643322 1221 2222 455 3 66688999999999874432211000
Q ss_pred ---ceeeee--------------Eeecc--ccceeEEEEecCCCEEEEEe------------------------------
Q 038568 223 ---RHMLVT--------------TLVKH--RSTVNALALNGDGSLLFSGG------------------------------ 253 (357)
Q Consensus 223 ---~~~~~~--------------~~~~~--~~~v~~~~~~~~~~~l~~~~------------------------------ 253 (357)
...++. .+.+. ...-..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 000000 00000 00012456777666554431
Q ss_pred ---------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 254 ---------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 254 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+|.|..||+.+++..-....- ....--.+.-.+.+++.++.||.++.||.++++
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 3478999999988754433221 111111234456778889999999999999984
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00013 Score=59.28 Aligned_cols=223 Identities=12% Similarity=0.073 Sum_probs=127.4
Q ss_pred eEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCc---cceeeeeecCcc
Q 038568 41 LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITAS---RQHQLVSTLPTV 114 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~ 114 (357)
+|+.+..+.|+..|+ ++.+....+. ....+..++|.+.. | ++-...+.|..+++... .....+..
T Consensus 3 ~ll~~~~~~I~~i~~-~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~---- 73 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTL-DRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 73 (316)
T ss_dssp EEEEECBSSEEEEET-TSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred EEEEECCCeEEEEEC-CCcceEehhc----CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----
Confidence 455555558888898 6655544443 44567899999743 4 44455688999988752 11111100
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
........+++.+ +.| ++-...+.|.+.++.... ...+..........+++
T Consensus 74 -------------------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iav 127 (316)
T 1ijq_A 74 -------------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVV 127 (316)
T ss_dssp -------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEE
T ss_pred -------------------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEe
Confidence 1112345677764 444 454567889999986432 22221223356789999
Q ss_pred ecC-CeEEEEeC-C-CeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEe-cCCeEEEEecccC
Q 038568 192 SDN-GVVYTGSA-D-GRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERD 266 (357)
Q Consensus 192 ~~~-~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~ 266 (357)
+|. +.|+.+.. . +.|..+++. ......+ ...-.....+++++++..|+.+. ..+.|..+|+...
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~d-----------G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLN-----------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETT-----------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEccCCCCeEEEEcCC-----------CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 985 45544443 3 688888775 1111111 12234578999999776665554 5678999999753
Q ss_pred CceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 267 HRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
... .+............++..++ ++++-...+.|..++..+++
T Consensus 197 ~~~-~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 197 NRK-TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SCE-EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ceE-EEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 322 22221111122344454455 55666677889999887664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-05 Score=67.74 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=47.0
Q ss_pred ecceEEEeeCC-ceEEEeccCCccccceeccccCCCCc------eEEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 38 HNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS------VKSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 38 s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~------v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
.+..+++++.+ .|.-+|. .+++.+-.+......... -..+++..+.++.++.|+.|.-+|..+++..-...
T Consensus 67 ~~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp ETTEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred ECCEEEEEcCCCCEEEEEC-CCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 36666667765 8888999 888887776541111000 02234455568888899999999999998654443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-05 Score=69.26 Aligned_cols=260 Identities=11% Similarity=0.055 Sum_probs=129.7
Q ss_pred cceEEEeeCC------------ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc--eEEee-cCCeEEEEecCC
Q 038568 39 NSLLYAASLN------------EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK--IFTAH-QDCKIRVWKITA 101 (357)
Q Consensus 39 ~~~l~t~~~d------------~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-~d~~i~vwd~~~ 101 (357)
+++++.|+.+ .+.+||. .+.+- +..+.. ++.....++++..++ ++.|+ .+..+.+||..+
T Consensus 198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~-~t~~w~~~~~~~~--~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 198 GRVLMWSSYRNDAFGGSPGGITLTSSWDP-STGIVSDRTVTVT--KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECT-TTCCBCCCEEEEC--SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred CEEEEEecccccccccCCCCeEEEEEEeC-CCCcEEeCcccCC--CCCCccccccCCCCCCEEEeCCCCCCceEEecCcC
Confidence 6777777632 4788998 65432 222221 133334456776655 66666 355799999887
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe-c-CeEEEEe-cC-----CeEEEEEcCcch
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK-Q-GLMYSVS-WD-----RSFKIWNASNYK 173 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~l~~~~-~d-----g~i~iwd~~~~~ 173 (357)
.+.... ..++ ..... .+++.. . ++++.|+ .+ ..+.+||..+.+
T Consensus 275 ~~W~~~-~~~~---------------------------~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 275 DSWIPG-PDMQ---------------------------VARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TEEEEC-CCCS---------------------------SCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceeEC-CCCC---------------------------ccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 653322 1111 11111 223333 3 6677777 33 568999987654
Q ss_pred hhh-------hccccccccEEEEEEecCC-eEEEEeCC---------CeEEEEEccccccccccccceeeeeEeec----
Q 038568 174 CLE-------SVNKAHEDAVNAVVVSDNG-VVYTGSAD---------GRIRVWERSVVDHNKERKSRHMLVTTLVK---- 232 (357)
Q Consensus 174 ~~~-------~~~~~~~~~v~~~~~~~~~-~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---- 232 (357)
-.. .+...... ..+..++ .++.|+.+ ..+..||... .. ..........
T Consensus 326 W~~~~~~~~~p~~~~~~~----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~------~~-w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQ----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG------SG-DVKSAGKRQSNRGV 394 (656)
T ss_dssp EEEETTSCSGGGCCCCTT----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST------TC-EEEEEEECEETTEE
T ss_pred ceeCCCcccccccccccc----ceeecCCceEEEECCCCcEEEecCccceeeeecCC------cc-eeecCCcccccccc
Confidence 211 11000000 1111233 23444433 4567788762 11 0111111110
Q ss_pred --cccceeEEEEec-CCCEEEEEecCC-----------eEEEEecccCCceeee-eeccCCccceEEEee-cCceEEEec
Q 038568 233 --HRSTVNALALNG-DGSLLFSGGCDR-----------WIVVWERERDHRMVFA-EALWGHTGALLCLIN-VGDLLASGS 296 (357)
Q Consensus 233 --~~~~v~~~~~~~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~-~~~~l~~~~ 296 (357)
....-.++.|.. ++++++.|+.++ .|.+||..+..-.... ..+........++.. ++.+++.|+
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 011223444544 677888887543 6888888765422111 011111112232333 666888887
Q ss_pred CC-----------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC
Q 038568 297 AD-----------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL 349 (357)
Q Consensus 297 ~d-----------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 349 (357)
.+ ..+.+||..+.+ +..+..+...........+.|+++ +++.||.
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~-W~~~~~~~~~R~~hs~a~ll~dg~-------v~v~GG~ 530 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGR-------VFNGGGG 530 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSC-------EEEEECC
T ss_pred cccCcCcCCCCcccceEEEcCCCCc-eeecCCCCCccccccHhhcCCCcE-------EEecCCC
Confidence 54 468999998752 443333332222233445668888 8888884
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00027 Score=59.44 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=130.8
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCccc---eeeeeecC
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITASRQ---HQLVSTLP 112 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~~~---~~~~~~~~ 112 (357)
..+|+.+....|+..++ +.......+. ....+..|+|.+.. |+.+ ...+.|..+++..... ...+.
T Consensus 83 ~~~ll~~~~~~I~~i~l-~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~--- 154 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTL-DRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--- 154 (400)
T ss_dssp SCEEEEEETTEEEEECT-TSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---
T ss_pred cceeEEeccceeEEEcc-CCcceeEecc----ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---
Confidence 34566555558888888 6544443333 55678899999743 4444 4567888888865321 11110
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.........+++.+ ++.++-...+.|.+.++........+ .........|
T Consensus 155 --------------------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~i 207 (400)
T 3p5b_L 155 --------------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAI 207 (400)
T ss_dssp --------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEE
T ss_pred --------------------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceE
Confidence 01223456777775 44445556788999988654332222 3334457899
Q ss_pred EEecC-CeEEEEe--CCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEe-cCCeEEEEecc
Q 038568 190 VVSDN-GVVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERE 264 (357)
Q Consensus 190 ~~~~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~ 264 (357)
+++|. +.|+... ..+.|...++. ......+ ...-.....|++++++..|+.+. ..+.|..+|++
T Consensus 208 avdp~~g~ly~td~~~~~~I~~~~~d-----------G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGTPAKIKKGGLN-----------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp EEETTTTEEEEEECSSSCCEEEEETT-----------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEecccCeEEEEeCCCCCEEEEEeCC-----------CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 99985 4554443 24678888875 1111111 22235678999998777666654 46789999987
Q ss_pred cCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
......... ....-.....++...+ ++.+-...+.|..++..+++
T Consensus 277 G~~~~~~~~-~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 277 GGNRKTILE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SCCCEEEEE-CSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCccEEEEe-CCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 544322222 1111222345555555 56666677889999877664
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-05 Score=66.67 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=108.7
Q ss_pred cceEEEeeC-C-ceEEEeccCCccccceeccccCCC--------CceEEEEE--ecCc----eEEeecCCeEEEEecCCc
Q 038568 39 NSLLYAASL-N-EINVFDLISDYSHVDTFSNDLSSS--------GSVKSITF--HITK----IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 39 ~~~l~t~~~-d-~i~iw~~~~~~~~~~~~~~~~~~~--------~~v~~l~~--~~~~----l~~~~~d~~i~vwd~~~~ 102 (357)
+..+++++. + .|.-+|...+++.+-.+....... .....+++ ..+. ++.++.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 666777776 6 888888722566655554211000 00123455 3444 888889999999999999
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe------cCCeEEEEEcCcchhhh
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS------WDRSFKIWNASNYKCLE 176 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~ 176 (357)
+..-......... . +.....++ .....++.++ .+|.|+.+|.++++.+.
T Consensus 142 ~~~W~~~~~~~~~-~--------------------~~~~ssP~----v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 142 ETVWKVENSDIKV-G--------------------STLTIAPY----VVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp CEEEEEECCCGGG-T--------------------CBCCSCCE----EETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CEEEeecCCCCCc-c--------------------ceeecCCE----EECCEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 8654433211000 0 00001111 1234555555 37899999999988776
Q ss_pred hccccccc-------------------------------------cEEEEEEecCC-eEEEEeCC---------------
Q 038568 177 SVNKAHED-------------------------------------AVNAVVVSDNG-VVYTGSAD--------------- 203 (357)
Q Consensus 177 ~~~~~~~~-------------------------------------~v~~~~~~~~~-~l~~~~~d--------------- 203 (357)
.+...... .-..+++.++. .++.+..+
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence 55211100 00134455544 66666554
Q ss_pred -CeEEEEEccccccccccccceeeeeEee--ccc--------cceeEEEEe-cCC---CEEEEEecCCeEEEEecccCCc
Q 038568 204 -GRIRVWERSVVDHNKERKSRHMLVTTLV--KHR--------STVNALALN-GDG---SLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 204 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
+.|..+|.++ .+.+-.++ .|. .++. +... .+| ..++.++.+|.++++|.++++.
T Consensus 277 ~~sv~Ald~~T----------G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 277 TMTIFGRDADT----------GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp SSEEEEEETTT----------CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEeCCC----------CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 3788888872 22222222 221 1121 2222 467 4677788999999999998876
Q ss_pred eee
Q 038568 269 MVF 271 (357)
Q Consensus 269 ~~~ 271 (357)
+..
T Consensus 346 lw~ 348 (599)
T 1w6s_A 346 VSA 348 (599)
T ss_dssp EEE
T ss_pred eec
Confidence 543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00022 Score=56.36 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=114.0
Q ss_pred cceeEEEEe--cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-c-e-EEeecCCeEEEEecCCc
Q 038568 30 MIISCLAVH--NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K-I-FTAHQDCKIRVWKITAS 102 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~-l-~~~~~d~~i~vwd~~~~ 102 (357)
..+..++++ ++.|+.+. .+ .|..++. +.......+.. .......+++.++ + | ++-...+.|.+++++..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCCcEEEEEC---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 346788898 45555554 45 9999998 65443333322 2356789999985 3 4 44455678999998653
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec---CCeEEEEEcCcchhhhh
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW---DRSFKIWNASNYKCLES 177 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~ 177 (357)
... .+.. ........+++++ ..|+.+.. .+.|..+++.. .....
T Consensus 112 ~~~-~~~~-----------------------------~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 112 QRR-VLFD-----------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp SCE-EEEC-----------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred CEE-EEEE-----------------------------CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 321 1110 1113457888887 55555554 36888888753 22222
Q ss_pred ccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 178 VNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+..........+++++++ . +++-...+.|..+|+.. ......... ......++.. ++.++++...+
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g----------~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ----------PGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE----------EEEEEEEEC-CCSEEEEEEE-TTEEEEEETTT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC----------CceEEEecC-CCCceEEEEe-CCEEEEEECCC
Confidence 211223467889999975 5 45555678999999861 111111222 2234566664 34444444456
Q ss_pred CeEEEEecccCCce
Q 038568 256 RWIVVWERERDHRM 269 (357)
Q Consensus 256 g~i~vwd~~~~~~~ 269 (357)
+.|.++|..+++..
T Consensus 229 ~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 229 NSVIAMDLAISKEM 242 (267)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CeEEEEeCCCCCce
Confidence 89999999877644
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00037 Score=56.91 Aligned_cols=235 Identities=10% Similarity=0.012 Sum_probs=125.1
Q ss_pred ccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 29 HMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
...+.+|.|+ +..+++ +.+ .|.. .. +.++.-........+...+..+.+.++. ++.++.++.|.. ..+.++..
T Consensus 79 ~~~~~~i~~~~~~~~~~-g~~g~i~~-S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIV-GEPPIMLH-TT-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CCEEEEEEEETTEEEEE-EETTEEEE-ES-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSE
T ss_pred CccEEEEEecCCeEEEE-ECCCeEEE-EC-CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCC
Confidence 4578899998 454444 444 4433 22 4444444433211134567788876554 555555665422 12234333
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEE-EcCcchhhhhcccccc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIW-NASNYKCLESVNKAHE 183 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~ 183 (357)
..+.. .....+..+.+.+ ..++..+.+|.+..- |- .++.-..+.....
T Consensus 155 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~ 204 (327)
T 2xbg_A 155 QALVQ-----------------------------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTS 204 (327)
T ss_dssp EEEEC-----------------------------SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSS
T ss_pred EEeec-----------------------------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCC
Confidence 33221 2334677888887 445555555555443 32 1222222212345
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
..+..+.+.+++.++.++.+|.+++.+.. .+. ....+..- ......+..+.+.+++..++++ .+|.| .+.
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D------~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S 275 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPD------NSE-NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCS 275 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETT------EEE-EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEE
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCC------CCC-eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEe
Confidence 67888999998887777888888776421 000 11111100 0122357888998877766665 46766 444
Q ss_pred cccCCceeeeeeccCCccceEEEeec-CceEEEecCCCeEEEeeC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINV-GDLLASGSADRTVRIWQR 306 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vw~~ 306 (357)
.+.++..............+.++.+. +..+++++.+|.|.-++-
T Consensus 276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 55455433332221223445666664 446777788998776654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0004 Score=56.42 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=127.0
Q ss_pred eEEEeeCCceEEEeccCCcc-ccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 41 LLYAASLNEINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
+|+.+....|+..++ +... ....+.. ....+.+++|.+.. | .+-...+.|..++++.......+..
T Consensus 6 ~ll~~~~~~I~~i~l-~~~~~~~~~~~~---~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~------ 75 (318)
T 3sov_A 6 LLLYANRRDLRLVDA-TNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------ 75 (318)
T ss_dssp EEEEECEEEEEEEET-TCTTSCCEEEEE---EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE------
T ss_pred EEEEEccCeEEEEEC-CCCceEEEEEec---CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc------
Confidence 344444338888998 5543 1111111 23456789999743 4 4445667888888876532111110
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
........+++.+ .++++-...+.|.++++.... ...+..........+++.|
T Consensus 76 -----------------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp 131 (318)
T 3sov_A 76 -----------------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDP 131 (318)
T ss_dssp -----------------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEG
T ss_pred -----------------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeC
Confidence 1112345667765 444455567789999986432 2222123445678999998
Q ss_pred C-CeEEEEe--CCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCc
Q 038568 194 N-GVVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHR 268 (357)
Q Consensus 194 ~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 268 (357)
. +.|+... ..+.|..+++. ......+ ...-...+.|+++|++..|+.+ +..+.|..+|++....
T Consensus 132 ~~g~ly~td~~~~~~I~r~~~d-----------G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 132 SSGFMYWTDWGEVPKIERAGMD-----------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp GGTEEEEEECSSSCEEEEEETT-----------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCEEEEEecCCCCEEEEEEcC-----------CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 5 5555544 35778888765 1111111 1223456899999976666555 4577899999875433
Q ss_pred eeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcc
Q 038568 269 MVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 269 ~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 311 (357)
..... +.......++...+ ++.+-...+.|..++..+++.
T Consensus 201 ~~~~~---~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 201 QAVVK---GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEC---SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEec---CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 22221 12223345555555 556666778999999877643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00035 Score=54.31 Aligned_cols=198 Identities=10% Similarity=0.010 Sum_probs=121.7
Q ss_pred cccccEEEEEEec--C-eEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeE-EEEeCCCeEEEEEccccc
Q 038568 140 EHWDAVSDLVVKQ--G-LMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVV-YTGSADGRIRVWERSVVD 215 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~ 215 (357)
+-...+..++++| + ++++...++.|...|.. ++.+..+..........+++.+++.+ ++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4456799999998 4 45557778899999987 77777763333456788899888865 444467789998876211
Q ss_pred cccccccceeeeeEe------eccccceeEEEEecCCCEEEEEecCCeEEEEeccc---CCceeeeee--c--cCCccce
Q 038568 216 HNKERKSRHMLVTTL------VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER---DHRMVFAEA--L--WGHTGAL 282 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~--~--~~~~~~v 282 (357)
. ....... .........|+|+|.++.|+++.+.....+|.++. ...+..... + ..+....
T Consensus 103 ~-------i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 103 E-------VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp C-------EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred e-------eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 1 0011111 12344578999999988777777765556665541 111111111 0 1122345
Q ss_pred EEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeec-CCc------CceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 283 LCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLE-GHE------KPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 283 ~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
.++++++. +++.......|..+|.... ......+. +.. ..--+|+|.++++ +.++ +.-..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-------lyIv-sE~n~ 245 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-------IYIV-SEPNR 245 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-------EEEE-ETTTE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-------EEEE-cCCce
Confidence 77788776 7777778889999997643 22223333 211 2457999999987 5555 44445
Q ss_pred EEe
Q 038568 353 IKV 355 (357)
Q Consensus 353 v~~ 355 (357)
+..
T Consensus 246 ~y~ 248 (255)
T 3qqz_A 246 FYR 248 (255)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0006 Score=55.11 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=123.0
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-e
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-I 85 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l 85 (357)
.....+.+..+. -......++++ ++++++-..+ .|..||. +. +....+. ....+..+++.+++ |
T Consensus 18 ~~~~~~~~~~~p------~~~~pegia~~~~g~lyv~d~~~~~I~~~d~-~g-~~~~~~~----~~~~p~gia~~~dG~l 85 (306)
T 2p4o_A 18 ELAPAKIITSFP------VNTFLENLASAPDGTIFVTNHEVGEIVSITP-DG-NQQIHAT----VEGKVSGLAFTSNGDL 85 (306)
T ss_dssp CCCCEEEEEEEC------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CEEEEEE----CSSEEEEEEECTTSCE
T ss_pred cCCCceEeEeCC------CCCCcceEEECCCCCEEEEeCCCCeEEEECC-CC-ceEEEEe----CCCCceeEEEcCCCcE
Confidence 344555666664 22567789998 6666665566 9999998 54 3333333 44578899999887 5
Q ss_pred EEeec--CC-eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEE-ec
Q 038568 86 FTAHQ--DC-KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSV-SW 160 (357)
Q Consensus 86 ~~~~~--d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~-~~ 160 (357)
+.+.. ++ .|..++..+++... +...+. ......++..+ ..++.. ..
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~-~~~~~~----------------------------~~~~~g~~~~~~~~~~v~d~~ 136 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVET-LLTLPD----------------------------AIFLNGITPLSDTQYLTADSY 136 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEE-EEECTT----------------------------CSCEEEEEESSSSEEEEEETT
T ss_pred EEEeccCCcceEEEEcCCCCeEEE-EEeCCC----------------------------ccccCcccccCCCcEEEEECC
Confidence 55542 22 46666766654322 211110 01112223233 333333 35
Q ss_pred CCeEEEEEcCcch--hh------hh-ccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeE
Q 038568 161 DRSFKIWNASNYK--CL------ES-VNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTT 229 (357)
Q Consensus 161 dg~i~iwd~~~~~--~~------~~-~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (357)
++.|..+|..+++ .. .. .....-...+.+ ++++ . +++-...+.|..|++... +. ......
T Consensus 137 ~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-----g~--~~~~~~ 207 (306)
T 2p4o_A 137 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-----DK--PGEPEI 207 (306)
T ss_dssp TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-----SC--BCCCEE
T ss_pred CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-----CC--CCccEE
Confidence 7888888876431 11 00 001111234455 6666 4 455566789999998621 00 000111
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
+.. ......++++++|+++++....+.|.++|.. ++.. .............++++.
T Consensus 208 ~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~-~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 208 FVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT-IIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE-EEECGGGTCTTEEEEEEC
T ss_pred Eec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE-EEeecccccCCceEEEEe
Confidence 111 1345779999999877777778899999975 4321 122222222446777776
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00083 Score=56.24 Aligned_cols=189 Identities=13% Similarity=-0.007 Sum_probs=106.8
Q ss_pred ccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-Ce-EEEEeCCCeEEEEEccccccc
Q 038568 143 DAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-GV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
.....++|.+ +.|+ +-...+.|..+++........+ .........+++.+. +. +++-...+.|.+.++.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----- 189 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----- 189 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-----
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-----
Confidence 3577899986 4444 4456788999998765432222 222234567888864 44 4555567788888765
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEec-C-CeEEEEecccCCceeeeeeccCCccceEEEeecC--c-eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-D-RWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D-LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l 292 (357)
. ..........-.....++++|.+..|+.... + +.|..+++.......... ..-.....+++++ . +.
T Consensus 190 -g----~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 190 -G----AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp -S----CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEEGGGTEEE
T ss_pred -C----CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCeeeEEEeCCCCEEE
Confidence 1 1111112223345789999997666655543 4 678888887543222211 1222345667663 3 45
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++-...+.|..+++..... + ..+........+|++. .+. ++++-...+.|..+
T Consensus 262 ~aD~~~~~I~~~d~dG~~~-~--~~~~~~~~~P~giav~-~~~-------ly~td~~~~~V~~~ 314 (386)
T 3v65_B 262 WVDAKHHVIERANLDGSHR-K--AVISQGLPHPFAITVF-EDS-------LYWTDWHTKSINSA 314 (386)
T ss_dssp EEETTTTEEEEECTTSCSC-E--EEECSSCSSEEEEEEE-TTE-------EEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEeCCCCee-E--EEEECCCCCceEEEEE-CCE-------EEEeeCCCCeEEEE
Confidence 5556678899999875321 1 1222223445777773 333 55555556666543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00078 Score=54.44 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=115.6
Q ss_pred CceEEEEEecCc-eEEe-ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK-IFTA-HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~-l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
.....++|.+++ |+.+ ..++.|..||.... ..... ........+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-------------------------------~~~~~p~gia~ 79 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-------------------------------TVEGKVSGLAF 79 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-------------------------------ECSSEEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-------------------------------eCCCCceeEEE
Confidence 567789999877 5544 46788999987643 21111 11235778888
Q ss_pred ec-CeEEEEec--CC-eEEEEEcCcchhhhhccccccccEEEEEEecCCeEE-EEeCCCeEEEEEcccccccccccccee
Q 038568 151 KQ-GLMYSVSW--DR-SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVY-TGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 151 ~~-~~l~~~~~--dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.+ ..++.+.. ++ .|..+|..+++...............++..+++.++ +-..++.|..+|.... . ..
T Consensus 80 ~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~------~--~~ 151 (306)
T 2p4o_A 80 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP------S--GS 151 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT------E--EE
T ss_pred cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC------c--Ee
Confidence 88 43444442 22 466677666654322211122233455555666544 4445888888887511 0 00
Q ss_pred eee--------EeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccce--EEEeecCceEEE
Q 038568 226 LVT--------TLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGAL--LCLINVGDLLAS 294 (357)
Q Consensus 226 ~~~--------~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~ 294 (357)
... .....-...+.+ +|+++.|+.+ ...+.|..|++.....+.....+... ... .++..+++++++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEE
Confidence 000 000111234455 7888766555 45788999998752111111111000 112 334444556666
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe---eCCC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI---SSSS 335 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~ 335 (357)
....+.|.+++.. ++ ...+..+.......++++|. |++.
T Consensus 229 ~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 229 THIYNSVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CBTTCCEEEECTT-CC-EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred eCCCCeEEEECCC-CC-EEEEeecccccCCceEEEEecccCCCC
Confidence 6667889999875 32 12222333333568899998 7765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0012 Score=54.35 Aligned_cols=188 Identities=12% Similarity=-0.026 Sum_probs=106.5
Q ss_pred ccEEEEEEec--CeEEEE-ecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-Ce-EEEEeCCCeEEEEEccccccc
Q 038568 143 DAVSDLVVKQ--GLMYSV-SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-GV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
.....++|++ +.|+.+ ...+.|..+++........+ .........+++.+. +. +++-...+.|.+.++.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----- 146 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----- 146 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-----
Confidence 3467889986 555544 45788999998765432222 222234567888864 44 4555667889999876
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cC-CeEEEEecccCCceeeeeeccCCccceEEEeecC--c-eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CD-RWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D-LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l 292 (357)
.. .........-.....++++|.+..|+... .+ +.|..++++........ ...-.....+++++ . +.
T Consensus 147 -G~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 147 -GA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---DTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp -SC----SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC---CSSCSCEEEEEEETTTTEEE
T ss_pred -CC----ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE---ECCCCCcceEEEeCCCCEEE
Confidence 11 11111222334568999999666555444 44 78888888754322111 11223346677764 3 44
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
++-...+.|..+++..... +. .+........++++. .+. ++++-...+.|..
T Consensus 219 ~aD~~~~~I~~~~~dG~~~-~~--~~~~~~~~P~giav~-~~~-------ly~td~~~~~V~~ 270 (349)
T 3v64_C 219 WVDAKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF-EDS-------LYWTDWHTKSINS 270 (349)
T ss_dssp EEETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEE-TTE-------EEEEETTTTEEEE
T ss_pred EEECCCCEEEEEeCCCCce-EE--EEeCCCCCceEEEEE-CCE-------EEEecCCCCeEEE
Confidence 5555678899999875321 11 122223445677773 332 4555545555544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-05 Score=68.83 Aligned_cols=185 Identities=9% Similarity=0.042 Sum_probs=89.8
Q ss_pred EEEEec--CeEEEEec-CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEe-CC-----CeEEEEEcccccc
Q 038568 147 DLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGS-AD-----GRIRVWERSVVDH 216 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~d-----~~i~i~d~~~~~~ 216 (357)
++++.. .+++.|+. +..+.+||..+.+-...-.......-.+++..++++ ++.|+ .+ ..+.+||..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-- 324 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-- 324 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC--
Confidence 344444 66777773 458999998765422211011122223455556774 66666 34 56889998621
Q ss_pred ccccccceeeee-----EeeccccceeEEEEecCCCEEEEEecC---------CeEEEEecccCCceeeeeeccC-----
Q 038568 217 NKERKSRHMLVT-----TLVKHRSTVNALALNGDGSLLFSGGCD---------RWIVVWERERDHRMVFAEALWG----- 277 (357)
Q Consensus 217 ~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~----- 277 (357)
....+. .+..... ...+..+++.++.|+.+ ..+..||..+............
T Consensus 325 ------~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~ 395 (656)
T 1k3i_A 325 ------TWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395 (656)
T ss_dssp ------EEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred ------cceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccC
Confidence 111110 0000000 01122344444555444 3567888876653222211111
Q ss_pred -CccceEEEe---ecCceEEEecCCC-----------eEEEeeCCCCcceeeeeeecCCcCc-eEEEEEeeCCCCCCCCe
Q 038568 278 -HTGALLCLI---NVGDLLASGSADR-----------TVRIWQRGKENCYRCMAFLEGHEKP-VKSLVAISSSSSASNGI 341 (357)
Q Consensus 278 -~~~~v~~~~---~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~ 341 (357)
....-.++. ..+.+++.|+.++ .|.+||..+.. +..+..-..+... -.++...|+++
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~mp~~R~~~~~~~l~~g~------ 468 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFASNGLYFARTFHTSVVLPDGS------ 468 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEECTTCCSSCCBSCEEEECTTSC------
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-eeEEccCCCCCCcccCCeEECCCCC------
Confidence 011122332 3455788887543 68888887753 2222200112222 23456677887
Q ss_pred EEEEEcCCC
Q 038568 342 VSIGSGSLN 350 (357)
Q Consensus 342 ~~l~s~~~d 350 (357)
+++.||.+
T Consensus 469 -i~v~GG~~ 476 (656)
T 1k3i_A 469 -TFITGGQR 476 (656)
T ss_dssp -EEEECCBS
T ss_pred -EEEECCcc
Confidence 88888854
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0021 Score=54.63 Aligned_cols=149 Identities=9% Similarity=0.116 Sum_probs=86.1
Q ss_pred ceEEEEEecC--c-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 74 SVKSITFHIT--K-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 74 ~v~~l~~~~~--~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
....|+++|. + |+.+...+.|+.+|+..+...... ........+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------------------------------~~~~~P~~ia~ 186 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------------------------------SGLSKVRTICW 186 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------------------------------CCCSCEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------------------------------cCCCCcceEEE
Confidence 4567888862 3 666655578888888765432221 12245678888
Q ss_pred ec--CeEEEEec-CC----eEEEEEcCcchhh--hhccccccccEEEEEEec-CCeEE-EEeCCCeEEEEEccccccccc
Q 038568 151 KQ--GLMYSVSW-DR----SFKIWNASNYKCL--ESVNKAHEDAVNAVVVSD-NGVVY-TGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 151 ~~--~~l~~~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~l~-~~~~d~~i~i~d~~~~~~~~~ 219 (357)
++ +.|+.+.. ++ .+...+ ..+... ..+ ........++++| ++.|+ +-..++.|..++.. .
T Consensus 187 d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l--~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~------~ 257 (430)
T 3tc9_A 187 THEADSMIITNDQNNNDRPNNYILT-RESGFKVITEL--TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFT------T 257 (430)
T ss_dssp CTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEE--EECSSCCCEEECTTTCCEEEEETTTTEEEEEETT------T
T ss_pred eCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeee--ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECC------C
Confidence 88 54555554 22 233334 333322 122 1233456788999 66644 44567889999976 1
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEE-EecCCeEEEEeccc
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFS-GGCDRWIVVWERER 265 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 265 (357)
.. ...+... ........++|+|++++|+. -...+.|..++.+.
T Consensus 258 ~~--~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 258 QE--TTPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TE--EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred Cc--EEEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 11 1111111 11234678999999995544 45678899988763
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0044 Score=56.79 Aligned_cols=228 Identities=11% Similarity=0.074 Sum_probs=127.0
Q ss_pred eEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+|+.+....|+..++ ........+. ....+..|+|.+. + +++-...+.|+.+++...........+
T Consensus 397 ~Ll~an~~~Ir~i~l-~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v------ 465 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTL-DRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ 465 (791)
T ss_dssp EEEEECBSSEEEECT-TSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------
T ss_pred ccccccccceeEeec-cCCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE------
Confidence 444444447788887 5544333333 4566789999874 3 444455678888888653210000000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
+.........|++.. +++++-...+.|.+.++.... ...+..........|++.|.
T Consensus 466 --------------------i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~ 524 (791)
T 3m0c_C 466 --------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPV 524 (791)
T ss_dssp --------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETT
T ss_pred --------------------EecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecC
Confidence 001223445677765 445555567889999986433 33331334456789999986
Q ss_pred -CeEEEEe-C-CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCcee
Q 038568 195 -GVVYTGS-A-DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMV 270 (357)
Q Consensus 195 -~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 270 (357)
+.|+... . .+.|...++. ...........-.....|++++.+..|+.+. ..+.|..+++.......
T Consensus 525 ~g~LYwtD~g~~~~I~~~~~d----------G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~ 594 (791)
T 3m0c_C 525 HGFMYWTDWGTPAKIKKGGLN----------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 594 (791)
T ss_dssp TTEEEEEECSSSCEEEEEETT----------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCEEEecCCCCCeEEEEecC----------CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence 5555443 2 3678888875 1111111222235678999998666666554 46789999987554333
Q ss_pred eeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcc
Q 038568 271 FAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 271 ~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 311 (357)
.... ...-.....++..++ ++++-...+.|...+..+++.
T Consensus 595 v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 595 ILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred EecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcc
Confidence 3221 111122345666666 555555678888888777643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0023 Score=51.88 Aligned_cols=192 Identities=12% Similarity=-0.042 Sum_probs=105.7
Q ss_pred ccEEEEEEec--CeEEEE-ecCCeEEEEEcCcc---hhhhhccccccccEEEEEEec-CCe-EEEEeCCCeEEEEEcccc
Q 038568 143 DAVSDLVVKQ--GLMYSV-SWDRSFKIWNASNY---KCLESVNKAHEDAVNAVVVSD-NGV-VYTGSADGRIRVWERSVV 214 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d~~i~i~d~~~~ 214 (357)
.....++|++ +.|+.+ ..++.|..+++... .....+....-.....+++.+ .+. +++-...+.|.++++.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-- 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-- 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--
Confidence 4567888987 445444 45689999998751 222222122223457888886 444 4455667899999875
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC--CeEEEEecccCCceeeeeeccCCccceEEEeecC--c
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD--RWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D 290 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 290 (357)
. ................++++|.+..|+.+... +.|..+++...... .+.. ..-.....+++++ .
T Consensus 108 ----g----~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~--~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 108 ----G----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT--ENIQWPNGITLDLLSG 176 (316)
T ss_dssp ----S----SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEEC--SSCSCEEEEEEETTTT
T ss_pred ----C----CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEE--CCCCCceEEEEeccCC
Confidence 1 11111122233456899999966655555443 68888888643321 1111 1223345667764 3
Q ss_pred -eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 291 -LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++++-...+.|..+|+.... .+.+...........++++.. +. ++++-...+.|..+
T Consensus 177 ~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~-------ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DK-------VFWTDIINEAIFSA 234 (316)
T ss_dssp EEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TE-------EEEEETTTTEEEEE
T ss_pred EEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-CE-------EEEEECCCCeEEEE
Confidence 44555567899999987532 233322222223456777743 33 55555556666554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-05 Score=70.02 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=116.9
Q ss_pred EEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCc----cceeeeeecCcc
Q 038568 42 LYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITAS----RQHQLVSTLPTV 114 (357)
Q Consensus 42 l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~----~~~~~~~~~~~~ 114 (357)
|+.+....|+..++ ++.+....+. ....+..|+|.+.. |+.+ ...+.|+.+++.+. .....+.
T Consensus 380 ll~~~~~~I~~id~-~~~~~~~~~~----~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~----- 449 (699)
T 1n7d_A 380 LFFTNRHEVRKMTL-DRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----- 449 (699)
T ss_dssp BCCCCTTC-CEECT-TSCCEECCSC----CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-----
T ss_pred EEecCccceEEEeC-CCCcceeeec----cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-----
Confidence 33333337777787 6544444333 33456688898743 5544 34578888887651 1111000
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
........+++.+ .++++-...+.|.++++........+ .........+++
T Consensus 450 -------------------------~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giav 503 (699)
T 1n7d_A 450 -------------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVV 503 (699)
T ss_dssp -------------------------SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEEC
T ss_pred -------------------------CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEE
Confidence 0111233456653 34444455678999987654322222 222344577888
Q ss_pred ecCC-eEEEEeC--CCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEE-EEEecCCeEEEEecccC
Q 038568 192 SDNG-VVYTGSA--DGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLL-FSGGCDRWIVVWERERD 266 (357)
Q Consensus 192 ~~~~-~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~ 266 (357)
+|.+ +|+.+.. .+.|..+++. . .....+ ...-...+.|+|+|++..| ++-...+.|.++++...
T Consensus 504 Dp~~g~ly~td~~~~~~I~~~~~d------G-----~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 504 DPVHGFMYWTDWGTPAKIKKGGLN------G-----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CSSSSCCEECCCSSSCCEEBCCSS------S-----CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred ccCCCcEEEcccCCCCeEEEEeCC------C-----CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 8854 5444432 2677777664 1 111111 1122346789999875544 44456778999999754
Q ss_pred CceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCC
Q 038568 267 HRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~ 309 (357)
...... ...........+++.++ ++++....+.|..++..++
T Consensus 573 ~~~~~~-~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 573 NRKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CCEEEC-CCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred ceEEEE-ecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence 332222 11111122233444555 5566666789999998776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0011 Score=60.77 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=103.0
Q ss_pred cEEEEEEe-c--CeEEEE-ecCC----eEEEEEcCcc-hhhhhccccccccEEEEEEecCC-eEEEEeCC-----CeEEE
Q 038568 144 AVSDLVVK-Q--GLMYSV-SWDR----SFKIWNASNY-KCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD-----GRIRV 208 (357)
Q Consensus 144 ~v~~~~~~-~--~~l~~~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~i 208 (357)
.+....|+ | ++|+-+ +.+| .|+++|+.++ +.+... .......+.|+||+ .|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 8 555543 3333 4999999988 633211 11223568899998 45555544 25777
Q ss_pred EEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec---CCeEEEEecccCC-ceeeeeeccCCccceEE
Q 038568 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---DRWIVVWERERDH-RMVFAEALWGHTGALLC 284 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~ 284 (357)
+++. ........+... ........+.|+|||++|+..+. ...|+++|+.++. .................
T Consensus 252 ~~lg------t~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 252 HVMG------KLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EETT------SCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred EECC------CCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 7765 211111222211 22234567899999998887653 4468889988652 11001112223344455
Q ss_pred Ee-ecCc-eEEEecCC----CeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 285 LI-NVGD-LLASGSAD----RTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 285 ~~-~~~~-~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.. ..++ +++....+ ..|..+++.++..++.. +-.+.. .+..+.+. +. .++++...||..++|
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~------~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SN------YLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SS------EEEEEEEETTEEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CC------EEEEEEEeCCEEEEE
Confidence 55 2355 33443333 36677777643222220 122222 34455543 33 266677777765554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0027 Score=49.36 Aligned_cols=201 Identities=9% Similarity=0.078 Sum_probs=120.2
Q ss_pred CccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-e-EEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-I-FTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l-~~~~~d~~i~vwd~~~ 101 (357)
-.+.+..++|+ ++.|+ +...+ .|...|. . ++.++.+.- .-......|++.+++ + ++.-.++.+.++++..
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~-~-g~v~~~i~l--~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTT-N-GDLIRTIPL--DFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEET-T-CCEEEEEEC--SSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeC-C-CCEEEEEec--CCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 55679999999 45454 45566 9999998 5 777777642 123567888888877 4 4434567888988876
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc---chhhh
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN---YKCLE 176 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~---~~~~~ 176 (357)
............ . ............+++++ +.|+++.......+|.+.. ...+.
T Consensus 101 ~~~i~~~~~~~~-~--------------------~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 101 NSEVKILKKIKI-P--------------------LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TCCEEEEEEEEC-C--------------------CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CCeeeeeeeecc-c--------------------cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 543222211100 0 00012345578999999 5677776665556665541 11111
Q ss_pred hc------cccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeec-c------ccceeEEE
Q 038568 177 SV------NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-H------RSTVNALA 241 (357)
Q Consensus 177 ~~------~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~------~~~v~~~~ 241 (357)
.+ .......+.+++++|.. .++.......+..+|.. . .......+.. . -.....|+
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~------g---~~~~~~~L~~g~~~l~~~~~qpEGia 230 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV------G---EVIGEMSLTKGSRGLSHNIKQAEGVA 230 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT------C---CEEEEEECSTTGGGCSSCCCSEEEEE
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC------C---CEEEEEEcCCccCCcccccCCCCeeE
Confidence 11 01123457899999976 46677778889999976 1 1112222221 1 12567899
Q ss_pred EecCCCEEEEEecCCeEEEEec
Q 038568 242 LNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
|.++|++. ..++-+.+++|.-
T Consensus 231 ~d~~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 231 MDASGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp ECTTCCEE-EEETTTEEEEEEC
T ss_pred ECCCCCEE-EEcCCceEEEEEe
Confidence 99999844 4477777777654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0042 Score=51.22 Aligned_cols=229 Identities=12% Similarity=0.069 Sum_probs=113.1
Q ss_pred CceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 73 GSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 73 ~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.....|+|.|++ |+.+..+|.|.+++ .++ ...+...+ ++.........++++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~-~~~~~~~~------------------------v~~~g~~~p~gia~~ 83 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGR-LSTYAELS------------------------VYHRGESGLLGLALH 83 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTE-EEEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCC-ccEeecce------------------------EeecCCCCceeEEEC
Confidence 346789999997 77777889999998 332 12221111 001223456788888
Q ss_pred cC-----eEEEEecC------CeEEEEEcCcc-----hhh-hhcc--ccccccEEEEEEecCCeEEEEeCC---------
Q 038568 152 QG-----LMYSVSWD------RSFKIWNASNY-----KCL-ESVN--KAHEDAVNAVVVSDNGVVYTGSAD--------- 203 (357)
Q Consensus 152 ~~-----~l~~~~~d------g~i~iwd~~~~-----~~~-~~~~--~~~~~~v~~~~~~~~~~l~~~~~d--------- 203 (357)
|+ .|+.+... +.|..++...+ +.+ ..+. .........++|.|+|.|..+..+
T Consensus 84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d 163 (352)
T 2ism_A 84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQD 163 (352)
T ss_dssp TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGC
T ss_pred CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccC
Confidence 74 55555432 56777776532 111 1121 011123468999999965544321
Q ss_pred -----CeEEEEEcccccccccccc-----ceeeeeEeeccccceeEEEEec-CCCEEEEEecCCe--------EEEEecc
Q 038568 204 -----GRIRVWERSVVDHNKERKS-----RHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRW--------IVVWERE 264 (357)
Q Consensus 204 -----~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~--------i~vwd~~ 264 (357)
|.|.-++... ....... .........++. ....++|+| +++++++-...+. |.+. .
T Consensus 164 ~~~~~g~I~ri~~dG--~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~ 238 (352)
T 2ism_A 164 LASLGGKILRLTPEG--EPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--V 238 (352)
T ss_dssp TTCSSSEEEEECTTS--SBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEE--C
T ss_pred CCCCceEEEEEcCCC--CCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--c
Confidence 4565555431 0000000 000111112332 357899999 5664444332222 3332 2
Q ss_pred cCCc---------------eeeeeeccCCccceEEEee-cCceEEEecCCCeEEEeeCCCCcc---e-eeeeeecCCcCc
Q 038568 265 RDHR---------------MVFAEALWGHTGALLCLIN-VGDLLASGSADRTVRIWQRGKENC---Y-RCMAFLEGHEKP 324 (357)
Q Consensus 265 ~~~~---------------~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~---~-~~~~~~~~h~~~ 324 (357)
.+.. ..+...+..|. ....+++ .++++++.-..+.|...++..... . .....+. -...
T Consensus 239 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~-ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~r 316 (352)
T 2ism_A 239 PGGNYGWPRVVGRGNDPRYRDPLYFWPQGF-PPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-GFGR 316 (352)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCC-CEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-SSCC
T ss_pred cCCcCCCCcccCCCCCCCCcCCeEecCCCC-CCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-cCCC
Confidence 2210 01111222222 2334444 445666666677788877764321 0 1112222 2357
Q ss_pred eEEEEEeeCCC
Q 038568 325 VKSLVAISSSS 335 (357)
Q Consensus 325 v~~~~~~~~~~ 335 (357)
+..+++.||+.
T Consensus 317 p~~v~~~pdG~ 327 (352)
T 2ism_A 317 LREVQVGPDGA 327 (352)
T ss_dssp EEEEEECTTSC
T ss_pred eeEEEECCCCc
Confidence 89999999987
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0041 Score=51.36 Aligned_cols=57 Identities=9% Similarity=-0.126 Sum_probs=30.1
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC------eEEEeeCCCCcceee
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR------TVRIWQRGKENCYRC 314 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg------~i~vw~~~~~~~~~~ 314 (357)
.+.+||+.+.+- ..+..+........++...+.+++.|+.++ .|.++++++++..+.
T Consensus 286 ~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKW-DKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---C-EEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCce-eeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 578899886542 233333322333345556677777787543 466668887754433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0056 Score=49.65 Aligned_cols=190 Identities=12% Similarity=0.012 Sum_probs=106.8
Q ss_pred ccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CCe-EEEEeCCCeEEEEEccccccc
Q 038568 143 DAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NGV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
.....+.|.+ +.|+ +-...+.|..+++........+....-.....+++.+ .+. +++-...+.|.++++.
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----- 109 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD----- 109 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----
Confidence 3566888887 4444 4455678999998765322222122223456788886 444 4555567889999876
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEe--cCCeEEEEecccCCceeeeeeccCCccceEEEeecC--c-eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG--CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D-LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l 292 (357)
. ................++++|.+..|+... ..+.|...+++......... ..-.....+++++ . +.
T Consensus 110 -G----~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 110 -G----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---SEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp -S----CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEETTTTEEE
T ss_pred -C----CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE---CCCCCccEEEEeccCCEEE
Confidence 1 111111123334568999999766666555 25788888887433221111 1122345667764 3 45
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++-...+.|..+++.... .+.+. .+......++++..+ . ++.+-...+.|..+
T Consensus 182 ~aD~~~~~I~~~d~dG~~-~~~~~--~~~~~~P~glav~~~-~-------lywtd~~~~~V~~~ 234 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTN-RQAVV--KGSLPHPFALTLFED-I-------LYWTDWSTHSILAC 234 (318)
T ss_dssp EEETTTTEEEEEETTSCS-CEEEE--CSCCSCEEEEEEETT-E-------EEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEcCCCCc-eEEEe--cCCCCCceEEEEeCC-E-------EEEEecCCCeEEEE
Confidence 555667899999987532 12222 223344567776533 2 45555455555543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0069 Score=49.10 Aligned_cols=188 Identities=11% Similarity=0.134 Sum_probs=110.9
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC----C-e--EE--EEeC--CCeEEEEEccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN----G-V--VY--TGSA--DGRIRVWERSVVDHNKERK 221 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~-~--l~--~~~~--d~~i~i~d~~~~~~~~~~~ 221 (357)
.+++.....+-+.+||+ +++.+..+ .. ..++.+..-|+ + . ++ +... +++|++|++.. ..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp------~~ 110 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG------KN 110 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT------TT
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC------CC
Confidence 56677777889999999 88888877 22 45666666553 2 1 33 3333 57999997741 01
Q ss_pred cceeeeeEee-------ccccceeEEEE--ecC-CC-EEEEEecCCeEEEEecccC----CceeeeeeccCCccceEEEe
Q 038568 222 SRHMLVTTLV-------KHRSTVNALAL--NGD-GS-LLFSGGCDRWIVVWERERD----HRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 222 ~~~~~~~~~~-------~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~ 286 (357)
..+..+. .....+..+++ +|. ++ ++++...+|.+..|++... ......+.+.- ...+-.+.
T Consensus 111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv 186 (355)
T 3amr_A 111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA 186 (355)
T ss_dssp ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence 0122221 11155677777 664 44 6888889999999998532 11223334332 33555666
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCC--cceeeeeeec-CC-cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKE--NCYRCMAFLE-GH-EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~-~h-~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++. .|+.+-++.-|..++.+.. ...+.+.... ++ ...+..|+..+... ..+++|+|+-.+.++.+||
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~---g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD---GKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG---GCEEEEEEEGGGTEEEEEE
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC---CCEEEEEEcCCCCEEEEEE
Confidence 6654 8999999877777775422 1224444432 22 23688998865431 0123555654677887775
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0098 Score=50.54 Aligned_cols=150 Identities=10% Similarity=0.085 Sum_probs=81.7
Q ss_pred ceEEEEEecC---c-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 74 SVKSITFHIT---K-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 74 ~v~~l~~~~~---~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
....|+|.|+ + |+.+...+.|+.+++.++...... ........++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-------------------------------~~~~~P~gia 188 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-------------------------------TNIGQCADVN 188 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-------------------------------CCCSCEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-------------------------------cCCCCccEEE
Confidence 4567888873 3 666655578888888665432221 1234577888
Q ss_pred Eec-CeEEEEecCC-----eEEEEEcCcchhhh-hccccccccEEEEEEec-CCeEEEE-eCCCeEEEEEcccccccccc
Q 038568 150 VKQ-GLMYSVSWDR-----SFKIWNASNYKCLE-SVNKAHEDAVNAVVVSD-NGVVYTG-SADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 150 ~~~-~~l~~~~~dg-----~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~l~~~-~~d~~i~i~d~~~~~~~~~~ 220 (357)
+++ ..|+.+...+ .+...+.. +.... .. .........++++| ++.|..+ ..++.|+.+|.. .+
T Consensus 189 vd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~------~g 260 (433)
T 4hw6_A 189 FTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA------TG 260 (433)
T ss_dssp ECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT------TC
T ss_pred ECCCCCEEEEcCCCCcccceEEEEECC-CCeecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC------CC
Confidence 888 3355554422 13333322 11110 01 11223456688888 6665544 456788888875 11
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecc
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERE 264 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~ 264 (357)
... ..+... +....-..++|+|+++.|+.+ ...+.|+.++..
T Consensus 261 ~~~-~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 261 TLT-EEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CEE-EEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred eEE-EEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 100 111111 111223469999999855554 457889998865
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.81 E-value=0.011 Score=49.68 Aligned_cols=193 Identities=12% Similarity=-0.033 Sum_probs=106.7
Q ss_pred cccEEEEEEec--CeEEEE-ecCCeEEEEEcCcch---hhhhccccccccEEEEEEec-CCe-EEEEeCCCeEEEEEccc
Q 038568 142 WDAVSDLVVKQ--GLMYSV-SWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSD-NGV-VYTGSADGRIRVWERSV 213 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d~~i~i~d~~~ 213 (357)
...+..++|++ +.|+.+ ...+.|..+++.... ....+..........+++.+ .+. +++-...+.|.+.++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~- 189 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK- 189 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT-
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC-
Confidence 35678899987 555544 456789888886522 11222122345677888887 444 4555567889888876
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecC--
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-- 289 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 289 (357)
. ......+.........|+++|.+..|+.... .+.|...+++......... ..-.....+++++
T Consensus 190 -----g----~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 -----G----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLS 257 (400)
T ss_dssp -----T----CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEEETTT
T ss_pred -----C----CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEEEeCC
Confidence 1 1111122223345789999997666665543 4678888887544322221 1223446666663
Q ss_pred c-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 290 D-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 290 ~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
. +.++-...+.|..+|+.... .+.+......-....+|+...+ . ++++-...+.|..+
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~~-~-------lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-K-------VFWTDIINEAIFSA 316 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEETT-E-------EEEEESSSCSEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEeCC-E-------EEEecCCCCeEEEE
Confidence 3 44444567889999987542 2222222222234456666332 2 55555555555543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.006 Score=51.86 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=88.3
Q ss_pred cEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCC-----eEEEEEcccc
Q 038568 144 AVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADG-----RIRVWERSVV 214 (357)
Q Consensus 144 ~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~ 214 (357)
....+++.+ ..|+.+...+.|+.+|..+++..... ........+++++++.|+.+...+ .+..++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-- 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-- 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--
Confidence 456788885 56666665588999998776554333 344568899999998755555422 23333322
Q ss_pred ccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--c-
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D- 290 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~- 290 (357)
...... ..+. .......++++| ++.++++-..++.|+.+|..++.....+..... ...-..+++++ +
T Consensus 216 ----~~~~~~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 216 ----SGFTER---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-KGSNFHIVWHPTGDW 286 (433)
T ss_dssp ----GTTCCE---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-CSSCEEEEECTTSSE
T ss_pred ----CCeecc---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-CCCcccEEEeCCCCE
Confidence 000000 1111 234457789999 666666666788999999986653112211111 12223456655 4
Q ss_pred eEEEecCCCeEEEeeCC
Q 038568 291 LLASGSADRTVRIWQRG 307 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~ 307 (357)
++++-...+.|+.++..
T Consensus 287 LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEETTTTEEEEEEBC
T ss_pred EEEEeCCCCEEEEEeCC
Confidence 45555667899998865
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.011 Score=47.51 Aligned_cols=204 Identities=12% Similarity=0.101 Sum_probs=116.2
Q ss_pred CceEEEEEecCc--eEEee-cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 73 GSVKSITFHITK--IFTAH-QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
..-.+++|.+.. |+.++ ..++|..|+...+..... .++..... -.....+..+.
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~s~~---------------------g~~~~~~sGl~ 69 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGASSN---------------------GDGEQQMSGLS 69 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTTCCS---------------------SCCSEEEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCcccc---------------------CCCcceeeEEE
Confidence 344578998743 55555 689999999875533222 22210000 01112347888
Q ss_pred E---ec-CeEEEEec--------------CCeEEEEEcC---cchhhhhccc-----c-------ccccEEEEEEecCCe
Q 038568 150 V---KQ-GLMYSVSW--------------DRSFKIWNAS---NYKCLESVNK-----A-------HEDAVNAVVVSDNGV 196 (357)
Q Consensus 150 ~---~~-~~l~~~~~--------------dg~i~iwd~~---~~~~~~~~~~-----~-------~~~~v~~~~~~~~~~ 196 (357)
+ .+ +.|+.... +..|..+|+. +++.+..... . .......++..++|.
T Consensus 70 ~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 70 LLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp ESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred EeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence 8 45 44443322 6789999998 7776544310 1 123588999999995
Q ss_pred -EEEEeCC-CeEEEEEccccccccccccceeeee-Ee--eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee
Q 038568 197 -VYTGSAD-GRIRVWERSVVDHNKERKSRHMLVT-TL--VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 197 -l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
.++++.. +.|..++.. .. ...... .. .......+.|+++|+++.|++...+|.|..+|+...... .
T Consensus 150 aYVt~s~~~~~I~rV~pd------G~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~ 220 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSAD------GK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-P 220 (334)
T ss_dssp EEEEEEESSCEEEEECTT------SC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-C
T ss_pred EEEeCCCCCCeEEEEeCC------CC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-e
Confidence 5667777 777766654 10 011110 01 111233679999999998888877999999999854321 1
Q ss_pred eee-------ccCCccceEEEeecCce-EEEecCCCeEEEeeCCC
Q 038568 272 AEA-------LWGHTGALLCLINVGDL-LASGSADRTVRIWQRGK 308 (357)
Q Consensus 272 ~~~-------~~~~~~~v~~~~~~~~~-l~~~~~dg~i~vw~~~~ 308 (357)
+.. .......+......++. +++....+.+.+.+...
T Consensus 221 v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 221 EPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 111 01112223344556664 66666677666666554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.023 Score=50.75 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=130.1
Q ss_pred ceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 40 SLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 40 ~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.+|+.+....|+..++ ++......+.. ..-..+..|+|.+.. +++-..++.|..++++.......+.
T Consensus 7 ~~Ll~s~~~~I~~i~l-~~~~~~~~~~~--~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~------- 76 (628)
T 4a0p_A 7 AFLLFSRRADIRRISL-ETNNNNVAIPL--TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE------- 76 (628)
T ss_dssp CEEEEEETTEEEEEES-SCTTCEEECCC--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------
T ss_pred cEEEEEeCCcEEEEEC-CCCCcceEEEc--CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-------
Confidence 3455554448899998 65443332221 123467899999853 4455567889888887543222211
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
........+++.. ++.++-...+.|.+.++.... ...+....-.....|++.|
T Consensus 77 -----------------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp 132 (628)
T 4a0p_A 77 -----------------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDP 132 (628)
T ss_dssp -----------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEET
T ss_pred -----------------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEcc
Confidence 1112345666665 444555557889999986433 2222123345578999998
Q ss_pred -CCeEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCce
Q 038568 194 -NGVVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRM 269 (357)
Q Consensus 194 -~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 269 (357)
+|.|+... ..+.|...++. . .....+...-.....|+++++++.|+.+. ..+.|..+|+.....
T Consensus 133 ~~G~lY~tD~g~~~~I~r~~~d------G-----~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~- 200 (628)
T 4a0p_A 133 AEGFMYWTEWGGKPKIDRAAMD------G-----SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR- 200 (628)
T ss_dssp TTTEEEEEECSSSCEEEEEETT------S-----CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCCeEEEeCCCCCCEEEEEeCC------C-----CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence 45655544 25677777765 1 11112222345678999999766666554 567899999976443
Q ss_pred eeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcc
Q 038568 270 VFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~ 311 (357)
..+... ......++..++ .+++-...+.|...|..+++.
T Consensus 201 ~v~~~~---l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 201 EVIADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEC---CSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEeecc---CCCceEEEEECCEEEEecCCCCEEEEEECCCCCc
Confidence 222221 222345565556 445555678899998776643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0068 Score=55.61 Aligned_cols=194 Identities=8% Similarity=0.045 Sum_probs=100.7
Q ss_pred ceEEEEEe-cCc--eEEe-ecC----CeEEEEecCCc-cceeeeeecCccccceeeeecCCCeEEEeccccccccccccc
Q 038568 74 SVKSITFH-ITK--IFTA-HQD----CKIRVWKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA 144 (357)
Q Consensus 74 ~v~~l~~~-~~~--l~~~-~~d----~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
.+...+|+ ||+ |+-+ ..+ .+|+++|+.++ +.... .+ ...
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~------------------------------~~~ 222 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV------------------------------SGT 222 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE------------------------------EEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc------------------------------cCc
Confidence 67889999 997 4422 222 35999999887 52110 00 011
Q ss_pred EEEEEEec--CeEEEEecC-----CeEEEEEcCcchhh--hhccccccccEEEEEEecCCe-EEEEe---CCCeEEEEEc
Q 038568 145 VSDLVVKQ--GLMYSVSWD-----RSFKIWNASNYKCL--ESVNKAHEDAVNAVVVSDNGV-VYTGS---ADGRIRVWER 211 (357)
Q Consensus 145 v~~~~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-l~~~~---~d~~i~i~d~ 211 (357)
...+.|+| +.|+....+ ..|..+++.+++.. ..+..........+.|+||+. |+... ....|.++|+
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 34567887 456555554 35888888776532 222112234466889999993 44333 2346777887
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC----CeEEEEecccCCceee-eeeccCCccceEEEe
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD----RWIVVWERERDHRMVF-AEALWGHTGALLCLI 286 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~ 286 (357)
.. ...................++.|+.++.+++....+ ..|..+|+.+...... +.. ......+..+.
T Consensus 303 ~~------~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~ 375 (751)
T 2xe4_A 303 RK------GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIA 375 (751)
T ss_dssp SS------CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEE
T ss_pred CC------CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEE
Confidence 62 110110011112233445555555444444444433 3677777764221111 111 11122456667
Q ss_pred ecCc-eEEEecCCCeEE--EeeC
Q 038568 287 NVGD-LLASGSADRTVR--IWQR 306 (357)
Q Consensus 287 ~~~~-~l~~~~~dg~i~--vw~~ 306 (357)
+.++ ++++...++..+ ++++
T Consensus 376 ~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 376 VRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ECSSEEEEEEEETTEEEEEEEEC
T ss_pred EECCEEEEEEEeCCEEEEEEEec
Confidence 7666 566667777554 4554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.031 Score=51.37 Aligned_cols=256 Identities=12% Similarity=0.175 Sum_probs=143.7
Q ss_pred ccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcccee
Q 038568 29 HMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
...|.+|.-+ ..+|..|..+-+..||- ...+....... .....|.++.-..++ |..++.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG-~~~~~~~~~~~--~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSYDG-YSTQQHFTYGE--NNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEECS-SCEEECSCTTS--TTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEEEEECCCccccCC-CceEEEEccCC--CCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC
Confidence 4679999988 66777777666667775 33221111111 134578888877776 77777655 7889987653211
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhh--c-ccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLES--V-NKAHE 183 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~-~~~~~ 183 (357)
... .....|.++......|..++.+ -|..+|..+++.... . .....
T Consensus 97 ---~~~---------------------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~ 145 (758)
T 3ott_A 97 ---PET---------------------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPN 145 (758)
T ss_dssp ---CSC---------------------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSC
T ss_pred ---ccc---------------------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCC
Confidence 000 1123466665444667777766 588888765442211 0 01123
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeec----cccceeEEEEecCCCEEEEEecCCeEE
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK----HRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
..|.++....++.|..+..+ -+..++... .. .... .... ....|.++...+++..|..|+.. -+.
T Consensus 146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~------~~--~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~ 214 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSN------GK--FEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLF 214 (758)
T ss_dssp SCEEEEEECTTCCEEEEETT-EEEEEETTT------TE--EEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEE
T ss_pred CeEEEEEEcCCCCEEEEeCC-CHhhCccCC------Cc--eEEe-cCCCccccccceeEEEEEECCCCEEEEEECC-CCe
Confidence 56888888888877777654 577787651 11 1110 0110 12347888888777766666654 588
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeee-----cCCcCceEEEEEeeC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFL-----EGHEKPVKSLVAISS 333 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~ 333 (357)
.+|..+.+.. ....+ ....|.++..+.+ .|..|+.+ -+.+++..+++ .+..... .-....|.++....+
T Consensus 215 ~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 215 QYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTP-LQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSC-CEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred EEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCc-EEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 8887755321 22222 1345777776655 55555544 47888877642 1111110 012345888877666
Q ss_pred CC
Q 038568 334 SS 335 (357)
Q Consensus 334 ~~ 335 (357)
+.
T Consensus 290 g~ 291 (758)
T 3ott_A 290 HN 291 (758)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00052 Score=62.21 Aligned_cols=190 Identities=12% Similarity=-0.052 Sum_probs=99.3
Q ss_pred cEEEEEEec--CeEEEE-ecCCeEEEEEcCc----chhhhhccccccccEEEEEEecC-Ce-EEEEeCCCeEEEEEcccc
Q 038568 144 AVSDLVVKQ--GLMYSV-SWDRSFKIWNASN----YKCLESVNKAHEDAVNAVVVSDN-GV-VYTGSADGRIRVWERSVV 214 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~-l~~~~~d~~i~i~d~~~~ 214 (357)
.+..++|.+ +.|+.+ ...+.|+.+++.. ......+ .........|++.+. +. +++-...+.|.++++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d-- 483 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-- 483 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--
Confidence 455778876 555554 3457899998875 1222222 112223456777743 44 4444567889888875
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecC--c
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D 290 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 290 (357)
. ......+.........++++|.+.+|+.+.. .+.|.++++.......... ..-.....+++++ .
T Consensus 484 ----g----~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~---~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 484 ----G----VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSG 552 (699)
T ss_dssp ----S----CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC---SSCSSCCCEEECTTTC
T ss_pred ----C----CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe---CCCCCccEEEEeccCC
Confidence 1 1111111222244678899996655555443 2678888876433211111 1112234566654 3
Q ss_pred -eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 291 -LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++++-...+.|..+++.... .+.+...........+|++..+ . ++++....+.|..+
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~-------lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-K-------VFWTDIINEAIFSA 610 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-E-------EEEECSTTTCEEEE
T ss_pred EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-E-------EEEEeCCCCeEEEE
Confidence 55555667889999987532 2222221111223345555443 2 55666666666654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.02 Score=46.06 Aligned_cols=233 Identities=9% Similarity=0.114 Sum_probs=112.3
Q ss_pred cceEEEeeC--C-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc-eEEeecC----CeEEEEecCCccceeee
Q 038568 39 NSLLYAASL--N-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK-IFTAHQD----CKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~~--d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d----~~i~vwd~~~~~~~~~~ 108 (357)
+.+++.|+. . .+.+||. .+.+ .+..+.. .... .+++...+. ++.|+.+ ..+.+||+.+.+... +
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~-~~~~W~~~~~~p~---~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~-~ 85 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNP-KDYSWTDIRCPFE---KRRD-AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS-K 85 (306)
T ss_dssp CEEEEEECCSSTTSEEEEET-TTTEEEECCCCSC---CCBS-CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE-E
T ss_pred ceEEEEeCCCCCceEEEecC-CCCCEecCCCCCc---ccce-eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE-C
Confidence 345555553 3 8888998 5532 2222221 1122 233333444 6666654 567788887765432 2
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecC------CeEEEEEcCcchh--hhhccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWD------RSFKIWNASNYKC--LESVNK 180 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~--~~~~~~ 180 (357)
...+. . ......+.+...+++.|+.+ ..+.+||..+.+- +..+
T Consensus 86 ~~~p~--------------------------~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-- 136 (306)
T 3ii7_A 86 LGPPT--------------------------P-RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-- 136 (306)
T ss_dssp ECCSS--------------------------C-CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC--
T ss_pred CCCCc--------------------------c-ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC--
Confidence 22211 0 11112222333566666654 4588889876542 2222
Q ss_pred cccccEEEEEEecCCe-EEEEeC---------CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSA---------DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.....-.+++.. ++. ++.|+. -..+.+||+.. .....+..+......- ++... ++++++
T Consensus 137 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--------~~W~~~~~~p~~r~~~-~~~~~-~~~i~v 205 (306)
T 3ii7_A 137 LTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT--------ETWTELCPMIEARKNH-GLVFV-KDKIFA 205 (306)
T ss_dssp SSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTT--------TEEEEECCCSSCCBSC-EEEEE-TTEEEE
T ss_pred cCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCC--------CeEEECCCccchhhcc-eEEEE-CCEEEE
Confidence 111111122222 444 555543 34578888762 1222222222111111 22222 566777
Q ss_pred EEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----CeEEEeeCCCCcceeeeeeec
Q 038568 251 SGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----RTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 251 ~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~ 319 (357)
.|+.+ ..+.+||+.+.+ ...+..+........++...+.+++.|+.+ ..+.+||..+.+ +..+..+.
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~ 282 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK-WVANSKVR 282 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE-EEEEEEEE
T ss_pred EeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe-EEeCCCcc
Confidence 77653 358899988653 222222222222334455566677777754 568899998763 44444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.024 Score=46.66 Aligned_cols=230 Identities=11% Similarity=0.014 Sum_probs=114.2
Q ss_pred CceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 73 GSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 73 ~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.....|+|.|++ |+.+..+|.|++++. .++ ..+..++ ++.........++++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~------------------------v~~~g~~g~~gia~~ 81 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFD------------------------VANVGEAGLLGLALH 81 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECC------------------------CCCSTTCSEEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccc------------------------eeecCCCceeeEEeC
Confidence 456789999987 777888899999873 333 2222211 000122456778888
Q ss_pred cC-----eEEEEec----C----CeEEEEEcCcc-------hhh-hhccccccccEEEEEEecCCeEEEEeCC-------
Q 038568 152 QG-----LMYSVSW----D----RSFKIWNASNY-------KCL-ESVNKAHEDAVNAVVVSDNGVVYTGSAD------- 203 (357)
Q Consensus 152 ~~-----~l~~~~~----d----g~i~iwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~l~~~~~d------- 203 (357)
|+ .|+.+.. + +.|..|+.... +.+ ..+..........|+|.|+|.|..+..+
T Consensus 82 pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~ 161 (354)
T 3a9g_A 82 PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLA 161 (354)
T ss_dssp TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGG
T ss_pred CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccc
Confidence 73 5554443 2 56777776543 111 1121111123467899999965444322
Q ss_pred -------CeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCC---eEEEEecccCCc----
Q 038568 204 -------GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDR---WIVVWERERDHR---- 268 (357)
Q Consensus 204 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~vwd~~~~~~---- 268 (357)
|.|..++... .......-........++. ....++|+| +++++++-...+ .|.+... +..
T Consensus 162 ~d~~~~~G~I~ri~~dG--~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp 236 (354)
T 3a9g_A 162 QDLSSLAGKILRVDEEG--RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWP 236 (354)
T ss_dssp TCTTCCSSEEEEECTTS--CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTT
T ss_pred cCCCCCCeEEEEEcCCC--CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCC
Confidence 4555555430 0000000000011122333 346899999 565444432221 2443321 110
Q ss_pred -----------eeeeeec-cCCccceEEEee---------cCceEEEecCCCeEEEeeCCCCccee-eeeeecCCcCceE
Q 038568 269 -----------MVFAEAL-WGHTGALLCLIN---------VGDLLASGSADRTVRIWQRGKENCYR-CMAFLEGHEKPVK 326 (357)
Q Consensus 269 -----------~~~~~~~-~~~~~~v~~~~~---------~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~h~~~v~ 326 (357)
......+ ..| .....+.+ .+.++++.-..+.|...++....... ....+.+-...+.
T Consensus 237 ~~~g~~~~~~~~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~ 315 (354)
T 3a9g_A 237 LATGKAGRGEFVDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLR 315 (354)
T ss_dssp TCCSCCCCTTSCCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEE
T ss_pred cccCCCCCCCCcCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCee
Confidence 0111122 122 23444444 34466766677888888887532111 1122333345789
Q ss_pred EEEEeeCCC
Q 038568 327 SLVAISSSS 335 (357)
Q Consensus 327 ~~~~~~~~~ 335 (357)
.+++.||+.
T Consensus 316 ~v~~~pDG~ 324 (354)
T 3a9g_A 316 DVVIDDDGG 324 (354)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCCc
Confidence 999999987
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0073 Score=50.11 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=87.9
Q ss_pred CCeEEEEEcCcchhhhhcccc---ccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccc-c--cceeeeeEeec--
Q 038568 161 DRSFKIWNASNYKCLESVNKA---HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKER-K--SRHMLVTTLVK-- 232 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~~~~~~~-- 232 (357)
++.||.-++......+.+... .-..+..+..+|+|.+++-..+..|.+..+......... . ...+ ...+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccc-eeEEEcCC
Confidence 467888787644333333122 122577899999997666677789999998732211110 0 0111 122221
Q ss_pred ----cccceeEEEEec---CCCEEEEEecCCeEEEEecccCCc-eeeee------eccCCccceEEEeecCc----eEEE
Q 038568 233 ----HRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDHR-MVFAE------ALWGHTGALLCLINVGD----LLAS 294 (357)
Q Consensus 233 ----~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~----~l~~ 294 (357)
...+|..+.|+| .+..|++-..|+.|++||+..... +..+. ........+.+++|.++ |+++
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 257799999999 456899999999999999985321 11111 11122356778888776 5566
Q ss_pred ecCCCeEEEe
Q 038568 295 GSADRTVRIW 304 (357)
Q Consensus 295 ~~~dg~i~vw 304 (357)
...+|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 6788887654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.033 Score=47.24 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=84.1
Q ss_pred eeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC-C----eEEEEecC
Q 038568 32 ISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD-C----KIRVWKIT 100 (357)
Q Consensus 32 i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d-~----~i~vwd~~ 100 (357)
...|+++ +..|+++... .|+.+|+ +... +..+.. .......|+|++++ |+.+... + .+.+.+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~-~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDF-EKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEET-TTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEEC-CCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 4567776 3667777776 8899998 6544 333333 45668899999876 5555431 1 2333332
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~ 177 (357)
.+..... ..+ ........++++| ..|+ +-..++.|..++...+.....
T Consensus 213 ~g~~~~~-~~l----------------------------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 213 ESGFKVI-TEL----------------------------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp GGTSCSE-EEE----------------------------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceeee-eee----------------------------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 2221100 000 0112345667777 3444 444678899999876543222
Q ss_pred ccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEcc
Q 038568 178 VNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERS 212 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~ 212 (357)
...........++++|++. | ++-...+.|..++..
T Consensus 264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 2112234567899999994 4 444567889998865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.056 Score=49.63 Aligned_cols=154 Identities=12% Similarity=-0.033 Sum_probs=88.5
Q ss_pred ccEEEEEEec--CeEE-EEecCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEcccc
Q 038568 143 DAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVV 214 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~ 214 (357)
..+..++|.+ +.|+ +-...+.|+.+++..... ...+..........|++.+.+ . +++-...+.|.+.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-- 501 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-- 501 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--
Confidence 4567888887 4444 445567888888864311 111212233456678888765 4 5555667899999886
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeec--Cc
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GD 290 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 290 (357)
. ......+.........|+++|.+.+|+.... .+.|.+.++........+. ..-.....++++ ..
T Consensus 502 ----G----~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 502 ----G----VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSG 570 (791)
T ss_dssp ----S----SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---SSCSCEEEEEEETTTT
T ss_pred ----C----CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---CCCCCceEEEEecCCC
Confidence 1 1111112223345789999997666665543 3679888887544322221 122345566665 33
Q ss_pred -eEEEecCCCeEEEeeCCCC
Q 038568 291 -LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~ 309 (357)
++++-...+.|...++...
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred eEEEEeCCCCcEEEEecCCC
Confidence 4444455678999998654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.50 E-value=0.078 Score=50.96 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=122.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeE
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYV 128 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (357)
.|++.+. +....+..+.. +....|...+.+...++.++ .+.+.+++++.++.. .....
T Consensus 493 ~Irli~~-~~~~~~~~w~~--p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~-~~~~~----------------- 550 (1158)
T 3ei3_A 493 SVRLVSQ-EPKALVSEWKE--PQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELR-QISHT----------------- 550 (1158)
T ss_dssp CEEEEES-SSCCEEEEECC--TTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEE-EEEEE-----------------
T ss_pred EEEEEEC-CCCeEEEEEEC--CCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCcee-eeccc-----------------
Confidence 4555555 43334444442 13345777676666655554 567777777654221 11110
Q ss_pred EEecccccccccccccEEEEEEec--------CeEEEEec-CCeEEEEEcCcchhhhhccccccccEEEEEEec-CC--e
Q 038568 129 TVRRHKKRLWLEHWDAVSDLVVKQ--------GLMYSVSW-DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NG--V 196 (357)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~ 196 (357)
.-...|.|+++.+ .+++.|.. |++++|+++.+.+.+............++.+.. ++ +
T Consensus 551 -----------~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~ 619 (1158)
T 3ei3_A 551 -----------EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHY 619 (1158)
T ss_dssp -----------ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEE
T ss_pred -----------CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcE
Confidence 2245788888875 58888886 999999999875554433112223444444432 23 5
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
|.+|-.||.+..+.+... ++..... .....+ ..++.-..+...+..-+.+..+.-..+|.-+ ++ + ....+.
T Consensus 620 L~igl~dG~l~~~~~d~~----tg~l~d~-r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~-l-~~s~l~ 690 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLNIE----TGLLSDR-KKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK-L-VFSNVN 690 (1158)
T ss_dssp EEEEETTSEEEEEEECTT----TCCEEEE-EEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS-E-EEEEBS
T ss_pred EEEEeCCCeEEEEEEcCC----CCccccc-eeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc-e-EEeccC
Confidence 889999999887776521 1111111 111222 3344433444344332223334444444433 22 1 111211
Q ss_pred CCccceE-EEeec----CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 277 GHTGALL-CLINV----GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 277 ~~~~~v~-~~~~~----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
. ..+. ...|+ ++-++..+ ++.++|..+.+-+.+. +..+.- ...+..++++|..+
T Consensus 691 ~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~-~~~ipL-~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 691 L--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH-IRTVPL-YESPRKICYQEVSQ 749 (1158)
T ss_dssp S--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE-EEEEEC-SSEEEEEEEEGGGT
T ss_pred h--HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee-EEEEeC-CCCceEEEEcCCCC
Confidence 1 1222 22332 34455444 4459999886543222 333332 35788999999876
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.029 Score=45.11 Aligned_cols=176 Identities=9% Similarity=0.098 Sum_probs=85.2
Q ss_pred ecCeEEEEecC----CeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEeCC------CeEEEEEccccccc
Q 038568 151 KQGLMYSVSWD----RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGSAD------GRIRVWERSVVDHN 217 (357)
Q Consensus 151 ~~~~l~~~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~ 217 (357)
...+++.|+.+ ..+.+||+.+.+- +..+ .....-.+++.. ++ .++.|+.+ ..+.+||+..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~---- 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP--PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRT---- 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC--SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTT----
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC--CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCC----
Confidence 33566666654 5688888876542 2222 111111122222 44 45666654 4588888762
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEec---------CCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---------DRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
.....+..+......-..+. -++++++.|+. -..+.+||+.+.+ ...+..+........++...
T Consensus 128 ----~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~ 200 (306)
T 3ii7_A 128 ----ESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-WTELCPMIEARKNHGLVFVK 200 (306)
T ss_dssp ----TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEET
T ss_pred ----CceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCe-EEECCCccchhhcceEEEEC
Confidence 11222222221111111222 25666676654 3458899988663 22222222222223344455
Q ss_pred CceEEEecCC-----CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 289 GDLLASGSAD-----RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 289 ~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+.+++.|+.+ ..+.+||+.+.+ +..+..+.........+.+ ++. +++.||.+
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~-------i~v~GG~~ 257 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GSI-------VYVLAGFQ 257 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TTE-------EEEEECBC
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CCE-------EEEEeCcC
Confidence 6677777654 468899998763 4444333322222222222 444 77777754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.035 Score=44.44 Aligned_cols=149 Identities=9% Similarity=0.186 Sum_probs=75.8
Q ss_pred CeEEEEecC-----CeEEEEEcCcch-----hhhhccccccccEEEEEEecCCe-EEEEeCC-----CeEEEEEcccccc
Q 038568 153 GLMYSVSWD-----RSFKIWNASNYK-----CLESVNKAHEDAVNAVVVSDNGV-VYTGSAD-----GRIRVWERSVVDH 216 (357)
Q Consensus 153 ~~l~~~~~d-----g~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~ 216 (357)
.+++.|+.+ ..+.+||+.+.+ .+..+ .....-.+++.. +++ ++.|+.+ ..+.+||+..
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~--- 137 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM--NVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNI--- 137 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC--SSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTT---
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC--CCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCC---
Confidence 566666654 468899987755 22222 111111122222 454 5556543 3577888761
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCce
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDL 291 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 291 (357)
.....+..+......-..+. .++++++.|+.+ ..+.+||+.+.+- .....+........++...+.+
T Consensus 138 -----~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~~~~i 209 (301)
T 2vpj_A 138 -----DQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALLNDHI 209 (301)
T ss_dssp -----TEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEETTEE
T ss_pred -----CeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEECCEE
Confidence 12222222221111112222 266777777654 4588999876542 2222222222223444556667
Q ss_pred EEEecCC-----CeEEEeeCCCCcceeeee
Q 038568 292 LASGSAD-----RTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 292 l~~~~~d-----g~i~vw~~~~~~~~~~~~ 316 (357)
++.|+.+ ..+.+||+.+.+ +..+.
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 238 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDS-WTTVT 238 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTE-EEEEC
T ss_pred EEEeCCCCCcccceEEEEeCCCCc-EEECC
Confidence 7777764 468999998763 44343
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.07 Score=47.63 Aligned_cols=222 Identities=13% Similarity=0.085 Sum_probs=118.5
Q ss_pred eEEEeeCCceEEEeccCCcc-ccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCccceeeeeecCcccc
Q 038568 41 LLYAASLNEINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
+|.-+....|+..++ +... ....+.. .-..+..|+|++.. |+.+ ...+.|..++++.......+..
T Consensus 11 ~~~~~~~~~I~~i~~-~~~~~~~~~~~~---~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~------ 80 (619)
T 3s94_A 11 LLLYANRRDLRLVDA-TNGKENATIVVG---GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV------ 80 (619)
T ss_dssp CEEEECSSBEEEECC-C---------CB---CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC------
T ss_pred eEEEeccccEEEEeC-CCCcceEEEEEc---CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe------
Confidence 344444448888888 5432 1222221 44567899999743 4444 4467788888875422111111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
........+++.. + ++++-...+.|.+.++.... ...+....-.....|++.|
T Consensus 81 -----------------------~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp 136 (619)
T 3s94_A 81 -----------------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDP 136 (619)
T ss_dssp -----------------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEET
T ss_pred -----------------------CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEec
Confidence 1123567788876 4 44555567899999986433 2233123344567899988
Q ss_pred C-CeEEEEeC--CCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCc
Q 038568 194 N-GVVYTGSA--DGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHR 268 (357)
Q Consensus 194 ~-~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 268 (357)
. +.|+.... .+.|...++. +.....+ ...-...+.|++++++..|+.+ ...+.|..+|+.....
T Consensus 137 ~~g~ly~tD~g~~~~I~r~~~d-----------G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 137 SSGFMYWTDWGEVPKIERAGMD-----------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp TTTEEEEEECSSSCEEEEEETT-----------SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred CCCeEEEeccCCCCEEEEEECC-----------CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence 6 55544442 4566666654 1111111 1223457899999976655555 4567899999875433
Q ss_pred eeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc
Q 038568 269 MVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 269 ~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~ 310 (357)
.........|. ..++..++ .+++-...+.|...|..+++
T Consensus 206 ~~~~~~~~~~P---~gi~~~~~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 206 QAVVKGSLPHP---FALTLFEDILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp C---------C---CCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred EEEEeCCCCCc---eEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence 22221111222 34555566 44555567788888887764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.057 Score=45.08 Aligned_cols=242 Identities=8% Similarity=0.119 Sum_probs=137.2
Q ss_pred cceEEEe---eCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCc
Q 038568 39 NSLLYAA---SLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPT 113 (357)
Q Consensus 39 ~~~l~t~---~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 113 (357)
.+++.+- +.+ .|.|-|+ .++..+..-.. .--+.-.+|.. +++--...++.|+|+++.+......
T Consensus 35 DkyicVrE~~~~~~~vvIiDl-~~~~~~~rrpi------~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~---- 103 (494)
T 1bpo_A 35 DKFICIREKVGEQAQVVIIDM-NDPSNPIRRPI------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT---- 103 (494)
T ss_dssp TTEEEEEECCTTCCEEEEEET-TSTTSCEEEEC------CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEE----
T ss_pred CceEEEEecCCCCCeEEEEEC-CCCCcceeccc------ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhccee----
Confidence 5555543 234 8999999 55443322111 11234456655 3333347899999999886554432
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCc-chhhhhccccc----cccEE
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASN-YKCLESVNKAH----EDAVN 187 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~~v~ 187 (357)
....|.--.|-. +.|+..+ +..|.-|++.. ..+.+.+ ..| ...|.
T Consensus 104 ---------------------------~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvF-dR~~~L~~~QII 154 (494)
T 1bpo_A 104 ---------------------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQII 154 (494)
T ss_dssp ---------------------------CSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEE
T ss_pred ---------------------------cCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhhe-ecchhcccceEE
Confidence 234566666666 6666665 45799999864 2344444 222 35566
Q ss_pred EEEEecCCe--EEEEe------CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC---CEEEEEec--
Q 038568 188 AVVVSDNGV--VYTGS------ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG---SLLFSGGC-- 254 (357)
Q Consensus 188 ~~~~~~~~~--l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~-- 254 (357)
.-..+++.. +++|- -.|.+.+|..+ ....+.+.+|...-..+.+..+. ..++.+..
T Consensus 155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-----------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp EEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-----------TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred EEEECCCCCeEEEEeecccCCcccceEEEeecc-----------ccccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 666777773 44442 24678888876 23345566666554444433211 23333333
Q ss_pred -CCeEEEEecccC---Ccee---eeeecc---CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 255 -DRWIVVWERERD---HRMV---FAEALW---GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 255 -dg~i~vwd~~~~---~~~~---~~~~~~---~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
.+.++|.++... .... ....+. .-...-.++..+++ .+..-..-|.|++||++++ .++..-+-..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~ 300 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISG 300 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccC
Confidence 378999998643 1110 111111 11223345555555 7777888999999999998 6666666666
Q ss_pred CceEEEEEeeCC
Q 038568 323 KPVKSLVAISSS 334 (357)
Q Consensus 323 ~~v~~~~~~~~~ 334 (357)
++|..-+-....
T Consensus 301 ~~iF~t~~~~~~ 312 (494)
T 1bpo_A 301 ETIFVTAPHEAT 312 (494)
T ss_dssp SCEEEEEEETTT
T ss_pred CceEEecccCCC
Confidence 777665554443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.047 Score=43.72 Aligned_cols=150 Identities=14% Similarity=0.235 Sum_probs=73.1
Q ss_pred CeEEEEecC-----CeEEEEEcCcch--hhhhccccccccEEEEEEecCCeEEEEeCCC-----eEEEEEcccccccccc
Q 038568 153 GLMYSVSWD-----RSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGVVYTGSADG-----RIRVWERSVVDHNKER 220 (357)
Q Consensus 153 ~~l~~~~~d-----g~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~ 220 (357)
.+++.|+.+ ..+.+||..+.+ .+..+ .....-.+++...+..++.|+.++ .+.+||+.+
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~------- 133 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM--RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKS------- 133 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEEECCC--SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTT-------
T ss_pred EEEEEeCcCCCccccceEEECCCCCceeeCCCC--CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCC-------
Confidence 566666654 357888887654 22222 111111222222332456666543 466777651
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecC-------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEE
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLA 293 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 293 (357)
.....+..+....... +++. -++++++.|+.+ ..+.+||+.+.+- .....+........++...+.+++
T Consensus 134 -~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~~~~iyv 209 (302)
T 2xn4_A 134 -NEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVLNNLLYA 209 (302)
T ss_dssp -TEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEETTEEEE
T ss_pred -CeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-EECCCCccccccccEEEECCEEEE
Confidence 1222222222111111 2222 256667776542 3588999876542 222222222222344455666777
Q ss_pred EecCC-----CeEEEeeCCCCcceeeee
Q 038568 294 SGSAD-----RTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 294 ~~~~d-----g~i~vw~~~~~~~~~~~~ 316 (357)
.|+.+ ..+.+||+.+.+ +..+.
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~-W~~~~ 236 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNA-WRQVA 236 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTE-EEEEC
T ss_pred ECCCCCCcccceEEEEeCCCCC-EeeCC
Confidence 77764 368899998763 44343
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.055 Score=44.34 Aligned_cols=178 Identities=8% Similarity=0.094 Sum_probs=98.3
Q ss_pred EEEEEEec-CeEEEEe-------------cCCeEEEEEcCcch-hhhhcc-cc-----ccccEEEEEEec--CC--eEEE
Q 038568 145 VSDLVVKQ-GLMYSVS-------------WDRSFKIWNASNYK-CLESVN-KA-----HEDAVNAVVVSD--NG--VVYT 199 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~-------------~dg~i~iwd~~~~~-~~~~~~-~~-----~~~~v~~~~~~~--~~--~l~~ 199 (357)
.-++...+ ..+++++ .+|.|.++|.++.. ....+. .+ ..-....+.+.+ ++ +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34455556 5555554 68999999987421 111221 11 223566777655 34 4544
Q ss_pred Ee-C--CCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEEEec-----------------CCeE
Q 038568 200 GS-A--DGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFSGGC-----------------DRWI 258 (357)
Q Consensus 200 ~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i 258 (357)
+. . +..|.+|++. ........+..+.+. -...+.+.+.++|++.++... .|.|
T Consensus 132 vnh~~~~s~ielf~~d------~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQ------EEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EECSTTCCEEEEEEEE------TTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EECCCCCCeEEEEEEE------CCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 43 2 5678888876 222233344444432 245789999999987777541 2456
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee-CC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS-SS 334 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~ 334 (357)
+-+|.. +. ... ...-...+.++++++ +.++-+..+.|..|++...........+. ..+....++..+ ++
T Consensus 206 yr~d~~--~~-~~~---~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 206 TYYSPN--DV-RVV---AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTG 278 (355)
T ss_dssp EEECTT--CC-EEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTC
T ss_pred EEEECC--eE-EEe---ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCC
Confidence 555553 21 111 111223466777766 44555567899999987432222223332 245567888888 47
Q ss_pred C
Q 038568 335 S 335 (357)
Q Consensus 335 ~ 335 (357)
.
T Consensus 279 ~ 279 (355)
T 3sre_A 279 D 279 (355)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.13 Score=47.38 Aligned_cols=259 Identities=14% Similarity=0.182 Sum_probs=138.2
Q ss_pred ccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 29 HMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
...|.++... ...|..|+.+-+..||. .+.+....... ....|.++....+.|..++.+ -+..+|..+.+.. .
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~Gl~~yd~-~~~~f~~~~~~---~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNGILVYNY-RADRYEQPETD---FPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-S 135 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTEEEEEET-TTTEECCCSCC---CCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-E
T ss_pred CceEEEEEEcCCCcEEEEeCCCeEEEeC-CCCEEECcccC---CCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-E
Confidence 4568998877 66777777667788998 55433221111 234577776544447777665 5778887654422 1
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhh-ccc---cc
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLES-VNK---AH 182 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~ 182 (357)
+..... ......|.++.... ..|..++.+ -|..+|..+++.... ... ..
T Consensus 136 ~~~~~~-------------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 189 (758)
T 3ott_A 136 FDTRRN-------------------------GLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQS 189 (758)
T ss_dssp ECHHHH-------------------------CCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCS
T ss_pred eccCCC-------------------------CcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccc
Confidence 110000 01124577887776 666667665 477788765442111 100 01
Q ss_pred cccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 183 EDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 183 ~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
...|.++...+++ .|..|.. +.+..+|... .. ......+ ....|.++...++|.+.+ |+.+| +.++
T Consensus 190 ~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~------~~--~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~G-l~~~ 256 (758)
T 3ott_A 190 NLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST------GQ--IKQTEAF--HNNSIKSLALDGNGDLLA-GTDNG-LYVY 256 (758)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEEEEEETTT------TE--EEEEEEE--EEEEEEEEEECTTCCEEE-EETTE-EEEE
T ss_pred cceeEEEEEECCCCEEEEEEC-CCCeEEcCCC------Ce--EEeccCC--CCCeEEEEEEcCCCCEEE-EeCCc-eeEE
Confidence 2348888887765 4566664 4677888651 11 1111111 234588888887776544 45554 8888
Q ss_pred ecccCCceeeeeec----cCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeee----cCCcCceEEEEEee
Q 038568 262 ERERDHRMVFAEAL----WGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFL----EGHEKPVKSLVAIS 332 (357)
Q Consensus 262 d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~h~~~v~~~~~~~ 332 (357)
+..+.......... .-....|.++..+.+ .|-.|+..| +.++..... .+..... ......|.++.-..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~D~ 333 (758)
T 3ott_A 257 HNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSA--LQFIPISQITGTGDGNQFYSLFRDS 333 (758)
T ss_dssp CCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECT
T ss_pred ecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCc--eeEEecccCCCCCCCceEEEEEEcC
Confidence 87765321111110 012345777777655 555666667 544433221 1211100 01234577777666
Q ss_pred CCC
Q 038568 333 SSS 335 (357)
Q Consensus 333 ~~~ 335 (357)
++.
T Consensus 334 ~g~ 336 (758)
T 3ott_A 334 KGF 336 (758)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.057 Score=43.20 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=72.0
Q ss_pred CeEEEEecC-----CeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEeCC-----CeEEEEEccccccccc
Q 038568 153 GLMYSVSWD-----RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGSAD-----GRIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~ 219 (357)
..++.|+.+ ..+.+||+.+.+- +... .....-.+++.. ++ .++.|+.+ ..+.+||+.+
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~------ 184 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHT------ 184 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT------
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCC------
Confidence 555566543 3588888776442 2222 111111122222 45 45566544 4578888762
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEE
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLAS 294 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 294 (357)
.....+..+.........+. -++++++.|+.+ ..+.+||+.+.+- ..+..+........++...+.+++.
T Consensus 185 --~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (301)
T 2vpj_A 185 --GHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATVLRGRLYAI 259 (301)
T ss_dssp --TEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEETTEEEEE
T ss_pred --CcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEEECCEEEEE
Confidence 12222222221111112222 256777777764 4689999986542 2222222222223444556667777
Q ss_pred ecCC-----CeEEEeeCCCC
Q 038568 295 GSAD-----RTVRIWQRGKE 309 (357)
Q Consensus 295 ~~~d-----g~i~vw~~~~~ 309 (357)
|+.+ ..+.+||.++.
T Consensus 260 GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 260 AGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBCSSSBEEEEEEEETTTT
T ss_pred cCcCCCcccccEEEEcCCCC
Confidence 7765 46788898875
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.18 Score=48.50 Aligned_cols=173 Identities=13% Similarity=0.182 Sum_probs=105.7
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEe---cC--CeEEEEe----------CCCeEEEEEccccccccccccceee
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVS---DN--GVVYTGS----------ADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~--~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+.|++.|..+.+.+..+.......+.+++.- .+ .++++|. ..|.|++|++. . ...+.
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~------~--~kL~l 878 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS------D--GKLQT 878 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE------T--TEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE------C--CEEEE
Confidence 4688889888877766644455556666542 22 3577775 35789999986 1 12333
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeC
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
+... ..+++|++++-- +| +|++| ....|++|++...+.+........+ -.+..+...+++++.|..-..|.+...
T Consensus 879 v~~~-~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 879 VAEK-EVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp EEEE-EESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred EEEE-EcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEE
Confidence 3322 246778887744 45 45444 3578999999866543311111111 113456667889999998888887665
Q ss_pred CCCc-ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 307 GKEN-CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 307 ~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+..+ ....+. -..+...++++.+-.++ .++.+..+|.+.+.
T Consensus 954 ~~~~~~L~~~a-~D~~~~~vta~~~ld~~--------t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 954 KPMEGNFEEIA-RDFNPNWMSAVEILDDD--------NFLGAENAFNLFVC 995 (1158)
T ss_dssp ETTTTEEEEEE-ECCSCBCEEEEEEEETT--------EEEEEETTSEEEEE
T ss_pred EcCCCeEEEEE-eecccccEEEEEEEccC--------cEEEEcCCCcEEEE
Confidence 4321 222222 23456678999998765 57778888888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.068 Score=42.99 Aligned_cols=155 Identities=9% Similarity=0.101 Sum_probs=94.3
Q ss_pred EEEEEEec--CeEEEEe-cCCeEEEEEcCcchhhh-hcccc----c--cccEEEEEE---ecCCeEEEEeC---------
Q 038568 145 VSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKCLE-SVNKA----H--EDAVNAVVV---SDNGVVYTGSA--------- 202 (357)
Q Consensus 145 v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~----~--~~~v~~~~~---~~~~~l~~~~~--------- 202 (357)
-.+..|++ ..+..++ ..++|..||...+.... .+ .. . ...+..|.+ .|+++|++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34678877 6666666 78999999987543222 22 11 1 124678999 58886544333
Q ss_pred -----CCeEEEEEcc---ccccccccccceeeeeEeec-----------cccceeEEEEecCCCEEEEEecC-CeEEEEe
Q 038568 203 -----DGRIRVWERS---VVDHNKERKSRHMLVTTLVK-----------HRSTVNALALNGDGSLLFSGGCD-RWIVVWE 262 (357)
Q Consensus 203 -----d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd 262 (357)
+..|..||+. +.+. .....+.. .......++..++|+..++++.. +.|...+
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~--------~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKP--------VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCC--------SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccCCCCEEEEEcCCcCCCCCE--------EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 6789999976 2211 11111111 11347899999999999988888 8888887
Q ss_pred cccCCceeeee-ec--cCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 263 RERDHRMVFAE-AL--WGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 263 ~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
..... ..... .. .........+++.|+ .|++....|.|..+|+.+.
T Consensus 166 pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 166 ADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp TTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 76432 22211 11 111222456677654 5665555999999999854
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.078 Score=42.62 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=71.3
Q ss_pred CeEEEEecC-----CeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEeCC-----CeEEEEEccccccccc
Q 038568 153 GLMYSVSWD-----RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGSAD-----GRIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~ 219 (357)
.+++.|+.+ ..+.+||+.+.+- +..+ .....-.+++.. ++ .++.|+.+ ..+.+||+..
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~------ 193 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER------ 193 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT------
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCC--CccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCC------
Confidence 555555533 3588888876532 2222 111111122222 44 45666554 4578888762
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEE
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLAS 294 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 294 (357)
.....+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+ ...+..+........++...+.+++.
T Consensus 194 --~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 194 --NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITVHQGRIYVL 268 (308)
T ss_dssp --TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred --CeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEEECCEEEEE
Confidence 122222222211111222222 56777777764 468999988653 22222222222223344455667777
Q ss_pred ecCC-----CeEEEeeCCCC
Q 038568 295 GSAD-----RTVRIWQRGKE 309 (357)
Q Consensus 295 ~~~d-----g~i~vw~~~~~ 309 (357)
|+.+ ..+.+||+.+.
T Consensus 269 GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 269 GGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCBCSSCBCCEEEEEETTTT
T ss_pred cCcCCCcccceEEEEcCCCC
Confidence 7754 45788888875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.096 Score=50.63 Aligned_cols=228 Identities=9% Similarity=0.113 Sum_probs=123.0
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
+|.|-|+ ..+..+..-. -.--+.-.+|.. +++--...++.|+|+++........
T Consensus 49 ~vvIidl-~~~~~~~rrp------i~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~------------------ 103 (1630)
T 1xi4_A 49 QVVIIDM-NDPSNPIRRP------ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT------------------ 103 (1630)
T ss_pred eEEEEEC-CCCCCccccc------ccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccc------------------
Confidence 8999998 5543331111 111233345654 4444446889999998876544332
Q ss_pred EEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCc-chhhhhccccc----cccEEEEEEecCCe--EEE
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASN-YKCLESVNKAH----EDAVNAVVVSDNGV--VYT 199 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~--l~~ 199 (357)
...+|.--.|-. +.|+..+ +..|.-|++.. ..+...+ ..| ...|..-..+++.. +++
T Consensus 104 -------------~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~ 168 (1630)
T 1xi4_A 104 -------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLT 168 (1630)
T ss_pred -------------cCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEE
Confidence 234566677766 6666555 45799999963 3444444 333 45566666677773 444
Q ss_pred Ee------CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec--C-CCEEEEEec---CCeEEEEecccC-
Q 038568 200 GS------ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG--D-GSLLFSGGC---DRWIVVWERERD- 266 (357)
Q Consensus 200 ~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~---dg~i~vwd~~~~- 266 (357)
|- -.|.+.+|..+ ....+.+.+|.+.-..+.... . ...++.+.. .+.++|.++...
T Consensus 169 gi~~~~~~v~G~mQLyS~e-----------r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 169 GISAQQNRVVGAMQLYSVD-----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred eeccCCCcccceeeeeecc-----------cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 42 35788888876 223334455554433333321 1 122222211 368999988543
Q ss_pred --Cceeee---eeccC---CccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 267 --HRMVFA---EALWG---HTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 267 --~~~~~~---~~~~~---~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
...... ..+.. -...-.++..+++ .+..-+.-|.|.++|+.++ .++..-+-...+|...+.
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETIFVTAP 308 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCceEEecc
Confidence 111000 00111 1112234444444 7777788899999999998 444444444455544433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.13 Score=44.08 Aligned_cols=162 Identities=8% Similarity=0.037 Sum_probs=88.9
Q ss_pred ceEEEEEecC-c--eEEeec-CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 74 SVKSITFHIT-K--IFTAHQ-DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 74 ~v~~l~~~~~-~--l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
....|+|.|. . |+.+.. .+.|++.|+.++.......... ........++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~---------------------------~~~~~p~~ia 192 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT---------------------------IPTNRIRSIA 192 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT---------------------------SSCSBEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc---------------------------cccCCCcEEE
Confidence 3568899983 2 555544 3668888887665433322100 1234578899
Q ss_pred E-------ec--CeEEEEecCC-------eEEEEEcCc-chhh-----hhccccccccEEEEEEecC-Ce-EEEEeCCCe
Q 038568 150 V-------KQ--GLMYSVSWDR-------SFKIWNASN-YKCL-----ESVNKAHEDAVNAVVVSDN-GV-VYTGSADGR 205 (357)
Q Consensus 150 ~-------~~--~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~-~~-l~~~~~d~~ 205 (357)
| ++ +.|+.+...+ .|.+.+... +... ..+ . .......++++|+ +. +++-..++.
T Consensus 193 ~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-~-~~~~p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 193 FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-A-AYKQCNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-E-EESCCCCEEECTTTCCEEEEETTTTE
T ss_pred EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-c-cCCCceEEEEcCCCCeEEEEECCCCE
Confidence 9 77 5466665543 255665333 2221 122 1 1234457788884 44 556667888
Q ss_pred EEEEEcc-------ccccccccccc----eeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEeccc
Q 038568 206 IRVWERS-------VVDHNKERKSR----HMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERER 265 (357)
Q Consensus 206 i~i~d~~-------~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 265 (357)
|..+|+. ........... ...+... +.......|+|+|++++|+.+ +....|+.++...
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 9999986 11110000000 1111111 223446789999999965554 4577899877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.17 Score=45.17 Aligned_cols=186 Identities=13% Similarity=0.006 Sum_probs=106.0
Q ss_pred ccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccc
Q 038568 143 DAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
.....++|++ +.++ +-..++.|..+++........+ .........+++.+.+ . +++-...+.|.+.++.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d----- 110 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD----- 110 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----
Confidence 4577899988 5554 4455788999988654332222 2222356678887654 4 4555567889999875
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecC--c-eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D-LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l 292 (357)
... ...+ ....-.....|+++|....|+.... .+.|...++.......... .-.....+++++ + +.
T Consensus 111 -G~~--~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~----~~~~P~GlalD~~~~~LY 181 (628)
T 4a0p_A 111 -GQH--RQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP----NVGRANGLTIDYAKRRLY 181 (628)
T ss_dssp -STT--CEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----SCSSEEEEEEETTTTEEE
T ss_pred -CCc--EEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC----CCCCcceEEEccccCEEE
Confidence 111 1111 1123345689999996555655542 5678888887544322221 223445666664 3 44
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
++-...+.|...++..... +.+. .......++++..+ . +++|-...+.|..
T Consensus 182 ~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~~-~-------ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQD-Y-------IYWTDWSRRSIER 232 (628)
T ss_dssp EEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEETT-E-------EEEEETTTTEEEE
T ss_pred EEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEECC-E-------EEEecCCCCEEEE
Confidence 5555678899999876432 2222 22233457776553 2 4555444555544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.12 Score=41.57 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----CeEEEeeCCCCcceee
Q 038568 245 DGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----RTVRIWQRGKENCYRC 314 (357)
Q Consensus 245 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~ 314 (357)
++++++.|+.+ ..+.+||+.+.+- .....+........++...+.+++.|+.+ ..+.+||+.+.+ +..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET-WTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-EEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc-EEE
Confidence 56677777654 4588999876532 22222222222223445566677777764 568999998763 443
Q ss_pred ee
Q 038568 315 MA 316 (357)
Q Consensus 315 ~~ 316 (357)
+.
T Consensus 246 ~~ 247 (308)
T 1zgk_A 246 VA 247 (308)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.079 Score=39.77 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=74.0
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
..+..++|+|++.|.+. .+|.+.-.+..+.+...-.. ....+-.. +- ..-..+.|.|+|.+.++ .||.|+-++.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~-Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNG-GW-NQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECS-CG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEeccc-cc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 46779999999987666 78876665543110000000 00111000 11 11478899999987777 6699988876
Q ss_pred ccCCceeeee--ec--cCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCc--ce--eeeeeecCCcCceEEEEEeeCC
Q 038568 264 ERDHRMVFAE--AL--WGHTGALLCLINVGD-LLASGSADRTVRIWQRGKEN--CY--RCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 264 ~~~~~~~~~~--~~--~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~--~~--~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.+...-.-+. .. ..-=..+..+.+.|+ .|.+.. |+.++-+...+.. .+ .....-+..-..-+-+.|.+++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3322110000 00 011135678888888 666666 8875443333211 00 0011111223344557788888
Q ss_pred C
Q 038568 335 S 335 (357)
Q Consensus 335 ~ 335 (357)
.
T Consensus 194 ~ 194 (236)
T 1tl2_A 194 T 194 (236)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.067 Score=40.15 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=80.0
Q ss_pred CceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 73 GSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 73 ~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
..+.+++|+|++ |... .+|.+.-.+..+.....-+.... .+=..-.....++.|.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t-----------------------~IG~~Gw~~F~a~~fD 96 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK-----------------------KIGNGGWNQFQFLFFD 96 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE-----------------------EEECSCGGGCSEEEEC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccccc-----------------------EecccccccceEEEEC
Confidence 367799999988 6666 77876665554322111111000 0000011124788888
Q ss_pred c-CeEEEEecCCeEEEEEcCcchhhhhcc------ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccce
Q 038568 152 Q-GLMYSVSWDRSFKIWNASNYKCLESVN------KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 152 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+ ..|..+ .||.|.-++..+...-.-+. ...-..+..|.+.|+|.|.+.. |+.++-.... .. .....
T Consensus 97 ~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P--~~---~~~~w 169 (236)
T 1tl2_A 97 PNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP--VS---NQDNW 169 (236)
T ss_dssp TTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC--SS---TTCCH
T ss_pred CCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCC--CC---CCccc
Confidence 8 566666 67999888764322111110 1112467999999999877777 8885432211 00 00000
Q ss_pred e-eeeEee-ccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 225 M-LVTTLV-KHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 225 ~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
. ....+- ..-..-..+.|.+++.+.++. ++.++
T Consensus 170 l~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 170 LARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp HHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 0 011111 222334457788888766665 77443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.24 Score=44.21 Aligned_cols=153 Identities=13% Similarity=0.041 Sum_probs=88.1
Q ss_pred ccEEEEEEec--CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccc
Q 038568 143 DAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
.....++|++ +.|+.+. ..+.|..+++........+....-.....+++.+.+ . +++-...+.|.+.++.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d----- 114 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD----- 114 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-----
Confidence 4567888887 5555444 467888888865432222212223567889999844 4 4555667899999986
Q ss_pred cccccceeeeeEe-eccccceeEEEEecCCCEEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecC--c-e
Q 038568 218 KERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--D-L 291 (357)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~ 291 (357)
. .....+ ...-.....|+++|.+..|+.... .+.|...+++......... ..-.....++.++ . +
T Consensus 115 -G-----~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~~P~Glald~~~~~L 185 (619)
T 3s94_A 115 -G-----SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---SEIYWPNGLTLDYEEQKL 185 (619)
T ss_dssp -S-----CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSSEEEEEEETTTTEE
T ss_pred -C-----CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe---CCCCCCcEEEEEccCCEE
Confidence 1 111111 123345678999997666655543 4677777776433222221 1223345666664 3 4
Q ss_pred EEEecCCCeEEEeeCCCC
Q 038568 292 LASGSADRTVRIWQRGKE 309 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~ 309 (357)
.++-...+.|...++...
T Consensus 186 Y~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 186 YWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEETTTCCEEEESSSCC
T ss_pred EEEeCCCCeEEEecCCCC
Confidence 455556778988888754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.14 Score=41.29 Aligned_cols=71 Identities=6% Similarity=0.102 Sum_probs=40.6
Q ss_pred cCCCEEEEEec-C-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC-----eEEEeeCCCCcce
Q 038568 244 GDGSLLFSGGC-D-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR-----TVRIWQRGKENCY 312 (357)
Q Consensus 244 ~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~ 312 (357)
.++++++.|+. + ..+.+||+.+.+ ......+........++...+.+++.|+.++ .+.+||+.+. .+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN-KW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT-EE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC-eE
Confidence 35667777766 2 468999988653 2222222222222334455666777777654 5888998876 34
Q ss_pred eeee
Q 038568 313 RCMA 316 (357)
Q Consensus 313 ~~~~ 316 (357)
..+.
T Consensus 225 ~~~~ 228 (315)
T 4asc_A 225 APFE 228 (315)
T ss_dssp EEEC
T ss_pred EECC
Confidence 4443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.2 Score=41.81 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=72.8
Q ss_pred cEEEEEEec-CeEEEEecCCeEEEEEcCcchh----------hh--hcccc-----ccccEEEEEEecCC----eEEEEe
Q 038568 144 AVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKC----------LE--SVNKA-----HEDAVNAVVVSDNG----VVYTGS 201 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----------~~--~~~~~-----~~~~v~~~~~~~~~----~l~~~~ 201 (357)
.|..+..+| ..+++-..+..|.|-.+..+.. +. .+..+ ...+|..+.|+|-+ .|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 567788888 4444444567888888763210 11 11111 25679999999965 499999
Q ss_pred CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe--cCCeEEEE
Q 038568 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG--CDRWIVVW 261 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vw 261 (357)
.|+.|++||+......+..-...............|.+++|.+++-.|...+ .+|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999842211110000000011122336788999999887777755 78888765
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=96.72 E-value=0.16 Score=40.28 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=118.2
Q ss_pred CCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 72 SGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 72 ~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
...|..++.-....+.-. ||.+..|-.....+..... .....|..++..
T Consensus 23 ~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~------------------------------~~~~~i~~ia~G 71 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------------------------ATQSGVDAIAAG 71 (282)
T ss_dssp SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG------------------------------GGGSCCCEEEEC
T ss_pred cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc------------------------------cCCCCEEEEEeC
Confidence 346777777666522234 8999999866543322100 122357777777
Q ss_pred c-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 152 Q-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 152 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
. ..++. . ||.|..|-....-.+..- ......|..++...+..++. . +|.|..|-...... ...+
T Consensus 72 ~~hs~~l-~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gq------lg~~---- 136 (282)
T 3qhy_B 72 NYHSLAL-K-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQ------TTVP---- 136 (282)
T ss_dssp SSEEEEE-E-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTST------TSCC----
T ss_pred CCEEEEE-E-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCc------CCCC----
Confidence 7 33444 5 999999986643322211 22234677777765544444 3 99999997652111 1111
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
......|..++...+ ..+.-. ||.|+.|-.....++... ..-...|..++......+.- .||.|+.|-.....
T Consensus 137 ~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p---~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 137 AEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVP---AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYK 209 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCC---GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTS
T ss_pred ccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCc---eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCC
Confidence 112234666655433 222333 799999977654332211 11134577777766633333 69999999766431
Q ss_pred ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 311 CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 311 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.- ........|..++...... .+++ ||.|..|
T Consensus 210 qlg---~p~~~~~~v~~i~~G~~h~-------~al~---~g~v~~w 242 (282)
T 3qhy_B 210 QTT---VPTEALSGVSAIASGEWYS-------LALK---NGKVIAW 242 (282)
T ss_dssp TTC---CCGGGGSSCCEEEECSSCE-------EEEE---TTEEEEE
T ss_pred CCC---CCcccCCCceEEEcCCCEE-------EEEE---CCEEEEe
Confidence 111 1111123466676555442 3333 7788777
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.18 Score=40.92 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=109.4
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---------CeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---------GLM 155 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~l 155 (357)
++.....+-+.+||+ .++.++.+.. +.++.+..-| .++
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--------------------------------g~~nnVD~r~~~~l~g~~~dla 89 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--------------------------------GKLNNVDIRYDFPLNGKKVDIA 89 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--------------------------------SCEEEEEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--------------------------------CCcccEEEecccccCCceEeEE
Confidence 666667788999999 6665554421 2344444433 133
Q ss_pred EEEec---CCeEEEEEcC--cchhhhhccc---c--cc-ccEEEEEE--ecC-C--eEEEEeCCCeEEEEEccccccccc
Q 038568 156 YSVSW---DRSFKIWNAS--NYKCLESVNK---A--HE-DAVNAVVV--SDN-G--VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 156 ~~~~~---dg~i~iwd~~--~~~~~~~~~~---~--~~-~~v~~~~~--~~~-~--~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
++... +++|.+|++. ++ .+..+.. . .. ..+..+++ +|. + ++++...+|.+..|++.... .
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~---~ 165 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK---N 165 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT---T
T ss_pred EEeCCCCCCCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC---C
Confidence 44443 4789999773 33 2333311 1 11 45666777 663 4 48888889999999985210 1
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC--ceeeeeec-cCC-ccceEEEee--cC--c-
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH--RMVFAEAL-WGH-TGALLCLIN--VG--D- 290 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~-~~~v~~~~~--~~--~- 290 (357)
+....+.++.+.. .+.+..+...+....|+.+-++.-|..++.+... ....+... .++ ...+-.++. .+ +
T Consensus 166 g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 166 GYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp SCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 1124456666654 4578899999988899999998777777754221 11122222 122 224554544 33 2
Q ss_pred eEEEec-CCCeEEEeeCC
Q 038568 291 LLASGS-ADRTVRIWQRG 307 (357)
Q Consensus 291 ~l~~~~-~dg~i~vw~~~ 307 (357)
+|++++ .+++..+||.+
T Consensus 245 yLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEGGGTEEEEEESS
T ss_pred EEEEEcCCCCEEEEEECC
Confidence 555444 67899999997
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.21 Score=41.03 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=36.5
Q ss_pred CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE-EcCCCCeEE
Q 038568 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG-SGSLNGEIK 354 (357)
Q Consensus 289 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~-s~~~dg~v~ 354 (357)
++++++.-..+.|...++..++.......+......+..+++.|++. +++ +-..+|.|.
T Consensus 289 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-------lyv~td~~~g~I~ 348 (353)
T 2g8s_A 289 QKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY-------LYVLTDESSGELL 348 (353)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-------EEEEECSTTEEEE
T ss_pred CcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-------EEEEEeCCCCEEE
Confidence 45777777788888888875422222222223345789999999987 555 444566553
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.24 Score=39.87 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=71.5
Q ss_pred CeEEEEecC--------CeEEEEEcCcch--hhhhccccccccEEEEEEecCCeEEEEeC-C-----CeEEEEEcccccc
Q 038568 153 GLMYSVSWD--------RSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGVVYTGSA-D-----GRIRVWERSVVDH 216 (357)
Q Consensus 153 ~~l~~~~~d--------g~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~-d-----~~i~i~d~~~~~~ 216 (357)
..++.|+.+ ..+.+||..+.+ .+..+ .....-.+++...+..++.|+. + ..+.+||+.+
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--- 174 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK--- 174 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTT---
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCC---
Confidence 555566532 458888987653 22222 1111112223333334566665 2 4688888762
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC-----eEEEEecccCCceeeeeeccCCccceEEEeecCce
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR-----WIVVWERERDHRMVFAEALWGHTGALLCLINVGDL 291 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 291 (357)
.....+..+.........+. -++++++.|+.++ .+.+||+.+.+ ...+..+........++...+.+
T Consensus 175 -----~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~l 246 (315)
T 4asc_A 175 -----FEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSSLSLVSLVGTL 246 (315)
T ss_dssp -----TEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEE
T ss_pred -----CeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccceeEEEECCEE
Confidence 12222222221111112222 2667777777654 58889987653 22222222222223444556667
Q ss_pred EEEecCC--------------CeEEEeeCCCC
Q 038568 292 LASGSAD--------------RTVRIWQRGKE 309 (357)
Q Consensus 292 l~~~~~d--------------g~i~vw~~~~~ 309 (357)
++.|+.+ ..+.+||+.+.
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCC
Confidence 7777653 24778888876
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.23 Score=39.61 Aligned_cols=144 Identities=14% Similarity=0.166 Sum_probs=71.5
Q ss_pred cCeEEEEecCC-----eEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEeC-------CCeEEEEEcccccc
Q 038568 152 QGLMYSVSWDR-----SFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGSA-------DGRIRVWERSVVDH 216 (357)
Q Consensus 152 ~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-------d~~i~i~d~~~~~~ 216 (357)
...++.|+.++ .+.+||+.+.+- +..+ .....-.+++.. ++ .++.|+. -..+.+||+..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~--- 182 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATT--- 182 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTT---
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCC---
Confidence 35666666543 477888776432 2222 111111222222 44 3555543 23578888762
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCce
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDL 291 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 291 (357)
.....+..+....... ++.. -++++++.|+.+ ..+.+||+.+.+- ..+..+........++...+.+
T Consensus 183 -----~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~i 254 (302)
T 2xn4_A 183 -----NEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAGVCAVNGLL 254 (302)
T ss_dssp -----TEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEETTEE
T ss_pred -----CcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCeEEEECCEE
Confidence 1222222222111111 2222 256777777764 3688999886532 2222222222222344456667
Q ss_pred EEEecCCC-----eEEEeeCCCC
Q 038568 292 LASGSADR-----TVRIWQRGKE 309 (357)
Q Consensus 292 l~~~~~dg-----~i~vw~~~~~ 309 (357)
++.|+.++ .+.+||+.+.
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETTTT
T ss_pred EEECCcCCCcccccEEEEcCCCC
Confidence 77777653 4889999876
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.17 Score=41.65 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=47.4
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe---eccccceeEEEEecC---CCEEEEEec---
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL---VKHRSTVNALALNGD---GSLLFSGGC--- 254 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~--- 254 (357)
.....+++.|++.|+++..+|.|+++|.. + . ..+..+ .........|+++|+ +..|+++..
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-------G--~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-------G--K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-------C--E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-------C--c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 35678999999988888888999998732 1 1 122211 122355789999997 455555443
Q ss_pred -C----CeEEEEecccC
Q 038568 255 -D----RWIVVWERERD 266 (357)
Q Consensus 255 -d----g~i~vwd~~~~ 266 (357)
+ +.|..|+....
T Consensus 99 ~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp GGGCEEEEEEEEEECSS
T ss_pred CCCCcceEEEEEEECCC
Confidence 3 56777877643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.19 Score=48.68 Aligned_cols=185 Identities=11% Similarity=0.148 Sum_probs=104.2
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.+| ..+++--...++.|+|+.+...+..+ .....|.-=.|-.+..|+..+ +..|+-|++.. ...+..
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~--~~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~---------~s~P~k 140 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISLNTVALVT-DNAVYHWSMEG---------ESQPVK 140 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhccc--ccCCCceEEEecCCCeeEEEc-CCeEEEeccCC---------CCccHH
Confidence 445 33333334789999999998888887 345567777777666544333 45899999962 122333
Q ss_pred Eeecc----ccceeEEEEecCCCEEEEEe-------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-----eE
Q 038568 229 TLVKH----RSTVNALALNGDGSLLFSGG-------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-----LL 292 (357)
Q Consensus 229 ~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l 292 (357)
.+..| ...|..-..+++.++++..+ -.|.+.+|+.+... .+.+.||.+.-..+...+. .+
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~----sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc----chhhhHhHhhhheeccCCCCCCceEE
Confidence 33323 35576777788888776443 35788999887553 3445566555444433322 22
Q ss_pred EEecC---CCeEEEeeCCCC-c---ce--eeeeeec---CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSA---DRTVRIWQRGKE-N---CY--RCMAFLE---GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~---dg~i~vw~~~~~-~---~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+.. .+.++|-++..+ . .+ +.+..+. ...+-..++..++.-. ++..-..-|.|.+||
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-------~iy~itk~G~~~~~d 286 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------VVFLITKYGYIHLYD 286 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-------EEEEEecCceEEEEe
Confidence 22221 368888888553 1 00 0011111 1122233455555544 555666677777775
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.4 Score=39.14 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=116.5
Q ss_pred CCCceEEEEEecCc-eEEeec-CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQ-DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.-.....|+|.|++ ++.+.. .|.|++++...++. ..+..++ .++.........|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~-----------------------~v~~~g~~GllGi 85 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVP-----------------------GVSPSGEGGLLGI 85 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECT-----------------------TCCCBTTBSEEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccC-----------------------ceeecCCCCceee
Confidence 34567899999998 666666 89999998655432 2222111 1111334567889
Q ss_pred EEec-----CeEEEE---ecCCeEEEEEcCcch----------hh-hhccccccccEEEEEEecCCeEEEE-e-------
Q 038568 149 VVKQ-----GLMYSV---SWDRSFKIWNASNYK----------CL-ESVNKAHEDAVNAVVVSDNGVVYTG-S------- 201 (357)
Q Consensus 149 ~~~~-----~~l~~~---~~dg~i~iwd~~~~~----------~~-~~~~~~~~~~v~~~~~~~~~~l~~~-~------- 201 (357)
+++| ..|+.. ..++.|.-|.+..+. .+ ..+..........|.|.|+|.|..+ +
T Consensus 86 a~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~ 165 (347)
T 3das_A 86 ALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGL 165 (347)
T ss_dssp EECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGG
T ss_pred EeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCcc
Confidence 9987 344433 234556666654321 11 1111111223456999999964433 2
Q ss_pred ------CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCc------
Q 038568 202 ------ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHR------ 268 (357)
Q Consensus 202 ------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~------ 268 (357)
..|.|.-++... .....+.-........+|.+ ...++|+|+|.+.++=. .|+.=.|--+..+..
T Consensus 166 ~qd~~~~~G~IlRi~~dG--~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 166 SQDRKSLGGKILRMTPDG--EPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp TTCTTCSTTCEEEECTTS--SBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTC
T ss_pred ccCCCCCCCEEEEEeCCC--CccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcc
Confidence 134554444431 00000000000111224443 46899999876554432 232222222222211
Q ss_pred ---------eeeeeeccCCccceEEEeecC-ceEEEecCCCeEEEeeCCCCcc-eeeeeeecCCcCceEEEEEeeCCC
Q 038568 269 ---------MVFAEALWGHTGALLCLINVG-DLLASGSADRTVRIWQRGKENC-YRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 269 ---------~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
......+..+......++|.. ..+...-..+.|....+..... .+....+.+....+.+|+..||+.
T Consensus 243 ~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~ 320 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK 320 (347)
T ss_dssp CSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE
T ss_pred cCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc
Confidence 001111111222345555544 4555555566666666654421 112233445557899999999987
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.38 Score=38.73 Aligned_cols=71 Identities=11% Similarity=0.253 Sum_probs=39.3
Q ss_pred cCCCEEEEEec------CCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----CeEEEeeCCCCcce
Q 038568 244 GDGSLLFSGGC------DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----RTVRIWQRGKENCY 312 (357)
Q Consensus 244 ~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 312 (357)
.++++++.|+. -..+.+||+.+.+ ......+........++...+.+++.|+.+ ..+.+||+.+.+ +
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W 234 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK-W 234 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC-E
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe-E
Confidence 46667777764 2358999988654 222222222222223444566666666643 357789988763 4
Q ss_pred eeee
Q 038568 313 RCMA 316 (357)
Q Consensus 313 ~~~~ 316 (357)
..+.
T Consensus 235 ~~~~ 238 (318)
T 2woz_A 235 EVMT 238 (318)
T ss_dssp EECC
T ss_pred EECC
Confidence 4443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.44 Score=39.03 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCeEEEEEcCcchh----hhhccccccccEEEEEEecCCeEEEEeC------------------CCeEEEEEcccccccc
Q 038568 161 DRSFKIWNASNYKC----LESVNKAHEDAVNAVVVSDNGVVYTGSA------------------DGRIRVWERSVVDHNK 218 (357)
Q Consensus 161 dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~ 218 (357)
+.+|.+|++..... +..+....-...+.+.+.++|.+.++.. .|.|..+|..
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~------ 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN------ 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT------
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC------
Confidence 46777877654322 2222122234678999999997555432 1334444321
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccC
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERD 266 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~ 266 (357)
+ ...+...-...+.++|+||++.|+.+. ..+.|..|++...
T Consensus 212 ------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 212 ------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp ------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 1 112222234568999999998777665 5788999998743
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.65 Score=39.92 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=82.0
Q ss_pred eeEEEEe---cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEE-------ecCc--eEEeecCC-----
Q 038568 32 ISCLAVH---NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-------HITK--IFTAHQDC----- 92 (357)
Q Consensus 32 i~~~~~s---~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-------~~~~--l~~~~~d~----- 92 (357)
-..|+|+ +..|+.+. .. .|++.|+ +.+.....+............|+| ++++ |+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4567777 24455444 44 8999998 664444333321112346889999 8775 55555443
Q ss_pred --eEEEEecCC-cccee-e-eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeE
Q 038568 93 --KIRVWKITA-SRQHQ-L-VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSF 164 (357)
Q Consensus 93 --~i~vwd~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 164 (357)
.|.+.+... +.... . ...+. . ......++.+| .++++-..++.|
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~---------------------------~-~~~p~giavdp~~g~LYvtd~~~g~V 271 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA---------------------------A-YKQCNGATIHPINGELYFNSYEKGQV 271 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE---------------------------E-ESCCCCEEECTTTCCEEEEETTTTEE
T ss_pred CceEEEEecCCCCceeecccceeec---------------------------c-CCCceEEEEcCCCCeEEEEECCCCEE
Confidence 244554322 11100 0 00000 0 11234567777 445555677889
Q ss_pred EEEEcC-------cchh-----------hhh-ccccccccEEEEEEecCCe--EEEEeCCCeEEEEEcc
Q 038568 165 KIWNAS-------NYKC-----------LES-VNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERS 212 (357)
Q Consensus 165 ~iwd~~-------~~~~-----------~~~-~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~ 212 (357)
..+|+. ++.. ... +..........++++|++. +++-.....|+.++..
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 999987 4432 011 1112234467899999994 4444567888887754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.039 Score=44.80 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=101.4
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEe---cC-ceEEe--ecCCeEEEEecCCccceeeeeec
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH---IT-KIFTA--HQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~-~l~~~--~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
+.+++.++.| .|.-.|. ++++..-.+... ...++....-. .+ .++.+ +.||.|..++..++.....+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 6788899999 9999999 888888887752 11222221111 12 24433 58999999998877543222211
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEE---EEE-------ecCeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD---LVV-------KQGLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
. . -...++.. ... ....+++|+.+|.+...|+++|+.+..+...
T Consensus 87 ~-l-------------------------v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 Q-L-------------------------VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp H-H-------------------------HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred c-c-------------------------eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 0 0 01111111 001 2367899999999999999999999887432
Q ss_pred cccc------EEEEEE------ecCCeEEEEeCCCeEEEEEccccccccccccceee-eeEeecccc--ce-eEEEEecC
Q 038568 182 HEDA------VNAVVV------SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHML-VTTLVKHRS--TV-NALALNGD 245 (357)
Q Consensus 182 ~~~~------v~~~~~------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~--~v-~~~~~~~~ 245 (357)
.... ..|... ..++.++.+..+..+.+.+ + .+. .... ......... ++ ..-..+.+
T Consensus 141 ~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~------sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D 212 (339)
T 2be1_A 141 SKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-Y------DGA-SYNVTYSTWQQNVLDVPLALQNTFSKD 212 (339)
T ss_dssp CBCC--------------------CCEEEEEEEEEECEECC-T------TSC-CCCCEEEEEECCTTTHHHHTTCSSCSS
T ss_pred CCcccccccccccccccccccccCCCeEEEecceEEEEEEC-C------CCC-eEEEecccccccccccccccccccccC
Confidence 2111 111111 1123566666666655544 2 111 1110 111111100 00 00001224
Q ss_pred CCEEEEEecCCeEEEEecccCCce
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
+.+ +.++.||.|.-+|..++...
T Consensus 213 g~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 213 GMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp SCC-EEEETTTEEEEECSTTCCEE
T ss_pred CcE-EEECCCCEEEEEECCCCcEE
Confidence 555 45788999999998877743
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.59 Score=37.57 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=37.3
Q ss_pred CCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC--------------CeEEEee
Q 038568 245 DGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD--------------RTVRIWQ 305 (357)
Q Consensus 245 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~vw~ 305 (357)
++++++.|+.+ ..+.+||+.+.+ ...+..+........++...+.+++.|+.+ ..+.+||
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 56777777653 357789987654 222222222222234445566677777654 3578889
Q ss_pred CCCC
Q 038568 306 RGKE 309 (357)
Q Consensus 306 ~~~~ 309 (357)
+.+.
T Consensus 285 ~~~~ 288 (318)
T 2woz_A 285 DDKK 288 (318)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8876
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.27 Score=39.92 Aligned_cols=110 Identities=7% Similarity=0.080 Sum_probs=65.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe---cCCeEEEE--eCCCeEEEEEccccccccccccceeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS---DNGVVYTG--SADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
+.++.++.||.|.-.|.++|+.+.++......++....-. .++.++.+ ..||.|..++.. .+ ...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~------~G----~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH------QG----LQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT------TE----EEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC------CC----cEE
Confidence 5788999999999999999998888733211222221100 13344433 589999999976 21 111
Q ss_pred eEeec----cccceeE---EEE-e----cCCCEEEEEecCCeEEEEecccCCceeee
Q 038568 228 TTLVK----HRSTVNA---LAL-N----GDGSLLFSGGCDRWIVVWERERDHRMVFA 272 (357)
Q Consensus 228 ~~~~~----~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 272 (357)
..+.. ...++.. ... . ..+..+++|+.+|.+...|+++++.+...
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 11110 1112211 000 0 13557899999999999999999865444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.87 Score=37.33 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=40.0
Q ss_pred ceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC----c-eEEeecC------CeEEE
Q 038568 31 IISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT----K-IFTAHQD------CKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~-l~~~~~d------~~i~v 96 (357)
.-..++|. |+ |+++..+ .|++++- ...+.+..+............|+++|+ + |+.+... +.|..
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFRE-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEET-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEEC-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 35688998 65 5555666 8888873 332222222110013457889999998 3 5444332 56777
Q ss_pred EecCC
Q 038568 97 WKITA 101 (357)
Q Consensus 97 wd~~~ 101 (357)
++...
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 77664
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.68 Score=37.93 Aligned_cols=50 Identities=6% Similarity=-0.012 Sum_probs=26.3
Q ss_pred CeEEEEecccCCceeeeeeccC-CccceEEEeecCceEEEecC------CCeEEEeeC
Q 038568 256 RWIVVWERERDHRMVFAEALWG-HTGALLCLINVGDLLASGSA------DRTVRIWQR 306 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~------dg~i~vw~~ 306 (357)
..+.+||+.+.+- .....+.. ......++...+.+++.|+. ...+..||+
T Consensus 168 ~~v~~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQW-SYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEE-EEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcE-EECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 5789999886542 22222221 11112334445556666664 245777876
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=1 Score=37.82 Aligned_cols=232 Identities=8% Similarity=0.108 Sum_probs=128.4
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcccee-eeeecCcccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQ-LVSTLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~ 116 (357)
.+.||.=...++.|+|+ ++.+.++.+. ....|.-=.|-.+. |+-.+ +..|.-|+++...... .+...+..
T Consensus 77 ~~iiALrag~~lQiFnl-e~K~klks~~----~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L-- 148 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNI-EMKSKMKAHT----MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL-- 148 (494)
T ss_dssp SSCEEEEETTEEEEEET-TTTEEEEEEE----CSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG--
T ss_pred CcEEEEecCCeEEEEch-HHhhhhccee----cCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhc--
Confidence 34555554339999999 8888888887 45567677776554 44444 4679999997643222 22211111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-------cCCeEEEEEcCcchhhhhccccccccEE
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-------WDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
....|..-..++ +.++..+ -.|.+.+|..+.+. -+.+ .+|.....
T Consensus 149 ------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~i-eGhaa~F~ 202 (494)
T 1bpo_A 149 ------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI-EGHAASFA 202 (494)
T ss_dssp ------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEE-CCSEEEEE
T ss_pred ------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchh-eeeeeeeE
Confidence 012333333333 2222211 24678899886533 2233 56666555
Q ss_pred EEEEecCC---e-EEEEeC---CCeEEEEEcccc-ccccccccceeeeeEee---ccccceeEEEEecCCCEEEEEecCC
Q 038568 188 AVVVSDNG---V-VYTGSA---DGRIRVWERSVV-DHNKERKSRHMLVTTLV---KHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 188 ~~~~~~~~---~-l~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
.+....+. . ++.+.. .+.+.+.++... ...... ..+....+. ....-..++..++.-..++.-+.-|
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f--~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G 280 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 280 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC--CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTS
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc--cceeeeeeCCcccccCceeEEEecccCCEEEEEecCc
Confidence 55443222 2 333322 378999998632 111000 111111111 1234456788899888899999999
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCC
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~ 309 (357)
.|++||+.++..+..-+ + ....|...+.+. .-++.....|.|.--.++..
T Consensus 281 ~i~lyDleTgt~i~~nr-I--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNR-I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTTCCEEEEEE-C--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eEEEEecccceeeeeec-c--cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 99999999998654333 2 233443333332 25555557776666655543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.46 E-value=1.4 Score=34.74 Aligned_cols=238 Identities=12% Similarity=0.091 Sum_probs=131.7
Q ss_pred ceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceee
Q 038568 31 IISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 31 ~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.|..++.. ...++. . | .|..|-....++. ..-.. ....|..++...+. ++. . ||.|..|-.....+...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gql-g~p~~---~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQL-TMPAA---TQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTT-SCCGG---GGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCC-CCCcc---CCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 57777776 334444 4 7 9999987333332 21111 33467777777666 444 4 89999998665432211
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.. .-...|..++......+.-. ||.|..|-....-.+..- ......|.
T Consensus 97 P~------------------------------~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~ 144 (282)
T 3qhy_B 97 PA------------------------------EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVT 144 (282)
T ss_dssp CG------------------------------GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEE
T ss_pred Cc------------------------------ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeE
Confidence 00 11246888888775555555 999999986653333221 23345677
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.++.-....++. . ||.|..|-...... ...+. .....|..++...+ ..++. .||.|+.|-.....
T Consensus 145 ~i~~G~~~~~~l-~-~G~v~~wG~n~~gq------lg~p~----~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 145 ALDGGVYTALAV-K-NGGVIAWGDNYFGQ------TTVPA----EAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp EEEECSSEEEEE-E-TTEEEEEECCTTST------TSCCG----GGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTS
T ss_pred EEEcccCEEEEE-E-CCEEEEecCCCCCC------CCCce----ecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCC
Confidence 776654433443 3 79999997652111 11110 11245666665433 23333 59999999766543
Q ss_pred ceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 268 RMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
++.... .....|..++......+.-. ||.|+.|-.....+.. . ...|.+++.....
T Consensus 210 qlg~p~---~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~---v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 210 QTTVPT---EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSS---V----QSGVSSIEAGPNA 265 (282)
T ss_dssp TTCCCG---GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGG---G----SSCEEEEEECSSC
T ss_pred CCCCCc---ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCcccc---C----CCCcEEEEECcCe
Confidence 321111 11234666666555433334 9999999776542211 1 2357777666654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=3.1 Score=37.81 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=75.9
Q ss_pred CeEEEEecC------CeEEEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCC--eEEEEEccccccccccc
Q 038568 153 GLMYSVSWD------RSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADG--RIRVWERSVVDHNKERK 221 (357)
Q Consensus 153 ~~l~~~~~d------g~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~--~i~i~d~~~~~~~~~~~ 221 (357)
..++.|+.+ ..+.+||..+.+ .+..+ .....-.+++...++ .++.|+.++ .+.+||+.+
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t-------- 522 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE-------- 522 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT--------
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC--------
Confidence 556666543 357888887643 22222 111111223332355 466666544 688888762
Q ss_pred cceeeeeE---eeccccceeEEEEecC-CCEEEEEec--C-----CeEEEEecccCCc-----eeeeeec-cCCccceEE
Q 038568 222 SRHMLVTT---LVKHRSTVNALALNGD-GSLLFSGGC--D-----RWIVVWERERDHR-----MVFAEAL-WGHTGALLC 284 (357)
Q Consensus 222 ~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~vwd~~~~~~-----~~~~~~~-~~~~~~v~~ 284 (357)
.....+.. .........++.+..+ +++++.|+. + +.+.+||+.+..- ....... ........+
T Consensus 523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~ 602 (695)
T 2zwa_A 523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602 (695)
T ss_dssp TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence 12222221 1111222233555655 667777765 2 4588999987761 2222221 111222344
Q ss_pred Eeec-CceEEEecC--------CCeEEEeeCCCC
Q 038568 285 LINV-GDLLASGSA--------DRTVRIWQRGKE 309 (357)
Q Consensus 285 ~~~~-~~~l~~~~~--------dg~i~vw~~~~~ 309 (357)
+... +.+++.|+. ...+.+||+.+.
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 4555 667777774 346899999876
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.11 E-value=2.5 Score=36.10 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=37.9
Q ss_pred ccEEEEEEecCCeEEEEeCCC-eEEEEEccccccccccccceeeeeEee------ccccceeEEEEecC---CCEEEEEe
Q 038568 184 DAVNAVVVSDNGVVYTGSADG-RIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALALNGD---GSLLFSGG 253 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~ 253 (357)
.....|+|.|+|.|+++...+ .|++++... + ....+..+. ........|+|+|+ +..|..+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~------g--~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPES------G--SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT------C--CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCC------C--cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 345799999999877777775 688887531 1 111122221 12456779999995 55555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.61 E-value=2.5 Score=34.48 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=63.6
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec----cCCccceEEEeecCc-----eEEE---ecCC
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL----WGHTGALLCLINVGD-----LLAS---GSAD 298 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~-----~l~~---~~~d 298 (357)
...-...+.|+|.|+|+++++--..|.|++++...+... .+..+ .......+.++++|+ .|.. ...+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333455689999999997777655899999987654422 22211 123455788898873 3332 2345
Q ss_pred CeEEEeeCCCCc-------ceee-eeeec-CCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 299 RTVRIWQRGKEN-------CYRC-MAFLE-GHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 299 g~i~vw~~~~~~-------~~~~-~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
+.|.-|.+..+. ..+. +..+. .....-..|.|.|++. +.++.+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-------Lyvt~G 158 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-------LYAGTG 158 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-------EEEECB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-------EEEEEC
Confidence 566666665421 1122 22222 1122346799999987 666644
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=5.1 Score=36.38 Aligned_cols=148 Identities=11% Similarity=0.131 Sum_probs=73.3
Q ss_pred CeEEEEecC----CeEEEEEcCcchhhhhc-c-----ccccccEEEEEEec-CC-eEEEEeCC------CeEEEEEcccc
Q 038568 153 GLMYSVSWD----RSFKIWNASNYKCLESV-N-----KAHEDAVNAVVVSD-NG-VVYTGSAD------GRIRVWERSVV 214 (357)
Q Consensus 153 ~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~-~~-~l~~~~~d------~~i~i~d~~~~ 214 (357)
..++.|+.+ ..+.+||..+.+-...- . ......-.+++..+ ++ .++.|+.+ ..+.+||+.+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t- 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT- 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT-
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC-
Confidence 666666643 45788888765321110 0 01111122334443 55 45666543 3477788761
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC--eEEEEecccCCceeeeee---ccCCccceEEEeec-
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR--WIVVWERERDHRMVFAEA---LWGHTGALLCLINV- 288 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~- 288 (357)
.....+..+...... .+++.-.++++++.|+.++ .+.+||..+.. ...... .........++.+.
T Consensus 478 -------~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 478 -------REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp -------TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEET
T ss_pred -------CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeC
Confidence 122222222211111 1222224778888887655 68999988654 212211 11111122233444
Q ss_pred --CceEEEecC--C-----CeEEEeeCCCCc
Q 038568 289 --GDLLASGSA--D-----RTVRIWQRGKEN 310 (357)
Q Consensus 289 --~~~l~~~~~--d-----g~i~vw~~~~~~ 310 (357)
+.+++.|+. + +.+.+||+.+..
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 446777765 2 468899998875
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.28 E-value=7.9 Score=32.99 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=55.5
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc------CCccceEEEeecC----c-eEEEecC------
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW------GHTGALLCLINVG----D-LLASGSA------ 297 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~----~-~l~~~~~------ 297 (357)
.....|+|.|+|+++++-...+.|++++..++... .+..+. ......+.++++| + .|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45679999999997776554457988886544322 222221 1244567888886 3 3333221
Q ss_pred -------CCeEEEeeCCCCc----ceeeee-eec-CCcCceEEEEEeeCCC
Q 038568 298 -------DRTVRIWQRGKEN----CYRCMA-FLE-GHEKPVKSLVAISSSS 335 (357)
Q Consensus 298 -------dg~i~vw~~~~~~----~~~~~~-~~~-~h~~~v~~~~~~~~~~ 335 (357)
...|.-|+..... ..+.+. .+. ........|+|.|++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 2355556553321 112222 122 1223468999999987
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=88.07 E-value=13 Score=32.56 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred cccEEEEEEecCCe--EEEEeCCCeEEEEEcccccccccc---ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 183 EDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKER---KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 183 ~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
......+..+|||+ ++.|-.+.++.++|++........ ........... -.......+|.++|.-..+---|.+
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence 34445678899994 556667899999999843221000 11111122222 3345678999999965556668999
Q ss_pred EEEEeccc
Q 038568 258 IVVWERER 265 (357)
Q Consensus 258 i~vwd~~~ 265 (357)
|..|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999975
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.72 E-value=12 Score=30.92 Aligned_cols=163 Identities=11% Similarity=0.096 Sum_probs=86.4
Q ss_pred cEEEEEEecCeEEEEecCCeEEEEEcCcchhhh-----------hccccccccEEEEEEec-CCeEEEEeCCCeEEEEEc
Q 038568 144 AVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLE-----------SVNKAHEDAVNAVVVSD-NGVVYTGSADGRIRVWER 211 (357)
Q Consensus 144 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~ 211 (357)
.|..++......+....+|.|..|-....-.+. .+.......+..++... +...++-..||.|..|-.
T Consensus 160 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~ 239 (389)
T 3kci_A 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239 (389)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEEC
T ss_pred eEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeC
Confidence 577777777667777789999999754321111 00011223466666543 234556678899999975
Q ss_pred cccccccccccceee-eeEeec-cccceeEEEEecCCCEEEEEecCCeEEEEecccCCce---------eeeeeccCCcc
Q 038568 212 SVVDHNKERKSRHML-VTTLVK-HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM---------VFAEALWGHTG 280 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~ 280 (357)
............... ...+.. ....|..++... .+.++-..||.|+.|-.....++ .+.....-...
T Consensus 240 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~ 317 (389)
T 3kci_A 240 GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK 317 (389)
T ss_dssp CGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTC
T ss_pred CCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCC
Confidence 422111010001111 111111 122355555543 34555578999999976432111 11111111123
Q ss_pred ceEEEeecCceEEEecCCCeEEEeeCCC
Q 038568 281 ALLCLINVGDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 281 ~v~~~~~~~~~l~~~~~dg~i~vw~~~~ 308 (357)
.|..++......++-..||.|+.|-...
T Consensus 318 ~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 318 KVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 4667776666666678899999997654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=86.72 E-value=12 Score=30.60 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=32.3
Q ss_pred cceeEEEEec-------CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 235 STVNALALNG-------DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 235 ~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
.....++|.. ++.++++.-..+.|...++..++.......+......+..+++.++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 4567788864 4667777667888888888754322111112122235666666655
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.56 E-value=14 Score=31.48 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=34.1
Q ss_pred cceeEEEEecCCC-EEEEEecCCeEEEEecccCCceeeeeec---c------CCccceEEEeecCc
Q 038568 235 STVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVFAEAL---W------GHTGALLCLINVGD 290 (357)
Q Consensus 235 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~------~~~~~v~~~~~~~~ 290 (357)
...+.|+|.|++. .|+++...|.|++++.........+..+ . ......+.++++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999985 4555678899999975432111111111 1 11355788999885
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.94 E-value=22 Score=33.64 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=29.4
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
.+.+++..++..++++-+.|+++|+|++.+++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 46677777888899999999999999999887543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.17 E-value=20 Score=33.94 Aligned_cols=35 Identities=17% Similarity=0.460 Sum_probs=29.0
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
.+.+++..+ .++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 456666666 78999999999999999999887764
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=81.04 E-value=23 Score=29.52 Aligned_cols=255 Identities=8% Similarity=0.004 Sum_probs=123.9
Q ss_pred cceeEEEEecceEEEeeCC-ceEEEeccCCccc----------cceeccccCCCCceEEEEEecCceEEeecC-CeEEEE
Q 038568 30 MIISCLAVHNSLLYAASLN-EINVFDLISDYSH----------VDTFSNDLSSSGSVKSITFHITKIFTAHQD-CKIRVW 97 (357)
Q Consensus 30 ~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~----------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d-~~i~vw 97 (357)
..|..|+.-+...+.-..| .|..|-....+++ ...+.. .....|..++.-.+..+.-..| +.|..|
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA--LDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGG--GTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecc--cCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 4566666655555555566 8888876222221 011111 0234677777666663333444 589999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhh-
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLE- 176 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~- 176 (357)
-.....++-.-.. .. . .... .+.......|..++......+.-..+|.|..|-....-.+.
T Consensus 94 G~n~~GqLG~g~~----~~----------~--~~p~--~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~ 155 (406)
T 4d9s_A 94 GWGDFGRLGHGNS----SD----------L--FTPL--PIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL 155 (406)
T ss_dssp ECCGGGTTCSSSC----CC----------E--EEEE--ECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred cCCCCcCCCCCCC----Cc----------c--ccce--EecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCC
Confidence 6543221110000 00 0 0000 00001223677777777677777889999999754321111
Q ss_pred ----------hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc--eeeeeEeeccccceeEEEEec
Q 038568 177 ----------SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR--HMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 177 ----------~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~ 244 (357)
.+.......|..++...+ ..++-..+|.|+.|-............. ..+..........|..++..
T Consensus 156 g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G- 233 (406)
T 4d9s_A 156 GDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG- 233 (406)
T ss_dssp SSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-
T ss_pred CCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-
Confidence 010011224555554332 4445567899999975422111000001 11111111112345555543
Q ss_pred CCCEEEEEecCCeEEEEecccCCce---------eeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCC
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRM---------VFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
..+.+.-..+|.|+.|-.....++ .+.....-....|..++......++-..||.|+.|-..
T Consensus 234 -~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 234 -WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp -SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred -CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCC
Confidence 335555678899999965432211 01111111123466666666666666789999999654
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=80.03 E-value=7.7 Score=35.01 Aligned_cols=36 Identities=11% Similarity=0.369 Sum_probs=30.0
Q ss_pred ccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 143 DAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 143 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
..|.++.+...++++-+.|+++|+|++++++++...
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 456666666689999999999999999999877665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 357 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 5e-15
Identities = 61/343 (17%), Positives = 122/343 (35%), Gaps = 32/343 (9%)
Query: 28 HHMIISCLAVHN--SLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKI 85
H ++ C+ N L V+ +SD S V S+D +++ +++ +
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKTTQVYR-VSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145
+ + + S + ++T R + + + E
Sbjct: 120 SDLY------IRSVCFSPDGKFLATGAE-----DRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 146 SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGR 205
D + S S DR+ +IW+ +C +++ AV D + GS D
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265
+RVW+ + + + H+ +V ++ DG + SG DR + +W +
Sbjct: 229 VRVWD---SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 266 DHRMVFAEALWGHTGAL-----------LCLINVGDLLASGSADRTVRIWQRGKENCYRC 314
+ ++ T + + + + SGS DR V W + N
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---P 342
Query: 315 MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
+ L+GH V S+ + SS V +GS + + ++W
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNV-FATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 30/145 (20%)
Query: 141 HWDAVSDLVV--KQGLMYSVSWDRSFKIWNASNYKCL-----------ESVNKAHEDAVN 187
H D+V +V + S S DRS K+WN N E H+D V
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 188 AVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA----- 241
+V + N + +GS D + W++ + L HR++V ++A
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKK----------SGNPLLMLQGHRNSVISVAVANGS 362
Query: 242 -LNGDGSLLFSGGCDRWIVVWERER 265
L + ++ +G D +W+ ++
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.3 bits (173), Expect = 2e-14
Identities = 43/289 (14%), Positives = 90/289 (31%), Gaps = 23/289 (7%)
Query: 70 SSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129
S G + + T A V + V+ D +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA--CGGLDNICSIYNLKTREG 131
Query: 130 VRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189
R + L + + + S D + +W+ + + D ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 190 VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249
+ D + +G+ D ++W+ M T H S +NA+ +G+
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGAL-LCLINVGDLLASGSADRTVRIWQRGK 308
+G D +++ D ++ G + G LL +G D +W K
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 309 ENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
L GH+ V + ++ ++ +GS + +K+W+
Sbjct: 302 A---DRAGVLAGHDNRVSC-LGVTDDGM------AVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.0 bits (167), Expect = 8e-14
Identities = 57/314 (18%), Positives = 108/314 (34%), Gaps = 41/314 (13%)
Query: 72 SGSVKSITFHI--TKIFTAHQDCKIRVWKI-TASRQHQLVSTLPTVKDRLIRSVLPNNYV 128
V + FH + + +A +D I+VW T + L +V+D
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 129 TVRRHKKRLWLEHWDAVSDLVVKQ-------------GLMYSVSWDRSFKIWNASNYKCL 175
+LW + + S S D++ K+W C+
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 176 ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE-------RSVVDHNKERKS---RHM 225
++ E D ++ + S D +RVW + +H +
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL 285
+ + + G L SG D+ I +W+ + L GH + +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL---MTLVGHDNWVRGV 253
Query: 286 I--NVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343
+ + G + S + D+T+R+W + RCM L HE V S + ++
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTS-LDFHKTAP------Y 303
Query: 344 IGSGSLNGEIKVWD 357
+ +GS++ +KVW+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.8 bits (143), Expect = 9e-11
Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 37/254 (14%)
Query: 12 FKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSS 71
H S P+ H++ + + + + F ++ + + D
Sbjct: 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD--- 154
Query: 72 SGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVR 131
T I + D +RVW + + + L + ++
Sbjct: 155 ----------GTLIASCSNDQTVRVWVV---ATKECKAELREHRH-------VVECISWA 194
Query: 132 RHKKRLWLEHWDAVSDLVVKQG--LMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189
+ + + S S D++ K+W+ S CL ++ H++ V V
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGV 253
Query: 190 VVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248
+ G + + + D +RVW+ + TL H V +L +
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYK----------NKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 249 LFSGGCDRWIVVWE 262
+ +G D+ + VWE
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288
L HRS V + + S++ S D I VW+ E L GHT ++ +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISFD 68
Query: 289 GDLLASGSADRTVRIWQRGKENCYRCMAF 317
S + I +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTM 97
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 6e-12
Identities = 63/339 (18%), Positives = 123/339 (36%), Gaps = 32/339 (9%)
Query: 31 IISCLAVHNSLLYAASL-NEINVFDLISDYSHVDTF---SNDLSSSGSVKSITFHITKIF 86
+I+CL + + + S N + V+ + T + + SS +I +
Sbjct: 19 VITCLQFCGNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77
Query: 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR----LWLEHW 142
T I H + ++ + S + + V + + + H
Sbjct: 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137
Query: 143 DAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA 202
AV + + S ++D K+W+ CL ++ + D V +GS
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQFDGIHVVSGSL 195
Query: 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262
D IRVW+ + TL H+S + + L + +L SG D + +W+
Sbjct: 196 DTSIRVWDVE----------TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 243
Query: 263 RERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE--G 320
+ + + H A+ CL + + + S D TV++W R + LE G
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303
Query: 321 HEKPVKSLVAISSSSSASNGIVSIGS--GSLNGEIKVWD 357
V + +S + + ++GS G+ ++ V D
Sbjct: 304 SGGVVWRI-----RASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 16/149 (10%)
Query: 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHML 226
W K V K H+D V + + +GS D ++VW
Sbjct: 1 WRRGELKSP-KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSA----------VTGKC 49
Query: 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI 286
+ TLV H V + + + + S + E + +GHT + C+
Sbjct: 50 LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL-----YGHTSTVRCMH 104
Query: 287 NVGDLLASGSADRTVRIWQRGKENCYRCM 315
+ SGS D T+R+W C +
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVL 133
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 2e-09
Identities = 42/361 (11%), Positives = 96/361 (26%), Gaps = 38/361 (10%)
Query: 28 HHMIISCLAVHNSLLYAASL-NEINVFDLISDYSHVDTFS-----------NDLSSSGSV 75
H I ++ NS + S + V+D + + + ++
Sbjct: 13 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 76 KSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK 135
+ F + + T + ++IT + + V +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 136 RLWLEHWDAVSD----LVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191
RL A + K S + + +V +
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192
Query: 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251
S+ G++ TG +G +++ E +++ + +++ ++ + GSLL
Sbjct: 193 SERGLIATGFNNGTVQISEL----STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248
Query: 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV---------------GDLLASGS 296
+L T + + G+ L S
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308
Query: 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356
D +R W + + L H ++ I + + + G + K W
Sbjct: 309 WDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 365
Query: 357 D 357
Sbjct: 366 R 366
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 8e-07
Identities = 8/84 (9%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 277 GHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAF---LEGHEKPVKSLVAISS 333
H + + S S D +++W + H+ + + + +
Sbjct: 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 334 SSSASNGIVSIGSGSLNGEIKVWD 357
+ + + + S +G++ +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYR 95
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 33/264 (12%), Positives = 84/264 (31%), Gaps = 39/264 (14%)
Query: 48 NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIF-TAHQDCKIRVWKITASRQHQ 106
+ + T + ++ S S+ + T + +++ +++ R
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219
Query: 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKI 166
+ ++ + +N + + + L S+ L + +R +
Sbjct: 220 NFESQHSMIN-------NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 167 WNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225
++ AH V ++ +D+G + + DG++R W+
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK----------TKE 322
Query: 226 LVTTLVKHRSTV----NALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA 281
+TTL H + + LA++ G L G + V +
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV--FDVKF--------------LKKGWR 366
Query: 282 LLCLINVGDLLASGSADRTVRIWQ 305
++ + L DR++R ++
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFR 390
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 48/300 (16%), Positives = 94/300 (31%), Gaps = 30/300 (10%)
Query: 21 KIPSPDPHHMIISCLAVHNSLLYAASL-NEINVFDLIS---------DYSHVDTFSNDLS 70
+I + CL + + + N I ++D + V D
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Query: 71 SSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTV 130
+ S + + + A + + + + + +
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 131 RRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV 190
+R+ + H AV+ + + S S DR+ K+WN S + + ++N +
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--L 184
Query: 191 VSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250
+ +V +GS+D IR+W+ + + LV + +
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR------------IV 232
Query: 251 SGGCDRWIVVWERERDHRMVFAEA------LWGHTGALLCLINVGDLLASGSADRTVRIW 304
SG D I VW+ L H+G + L + S S D T+ IW
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 8e-07
Identities = 58/308 (18%), Positives = 96/308 (31%), Gaps = 47/308 (15%)
Query: 70 SSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTL-------------PTVKD 116
+S V + + KI + +D I++W + L V
Sbjct: 13 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDK---NTLECKRILTGHTGSVLCLQYDERVII 69
Query: 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLE 176
+ + H +AV L G+M + S DRS +W+ ++ +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129
Query: 177 SVNKAHE-DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235
A VV D+ + + S D I+VW S V TL H+
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----------TCEFVRTLNGHKR 179
Query: 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295
+ L L+ SG D I +W+ E + E C+ + SG
Sbjct: 180 GIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSG 234
Query: 296 SADRTVRIW------QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL 349
+ D +++W C+ L H V + I S S
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR-LQFDEFQ--------IVSSSH 285
Query: 350 NGEIKVWD 357
+ I +WD
Sbjct: 286 DDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 1e-08
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 10/132 (7%)
Query: 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239
+ H +V + ++ V TG+ D IRV++ + L H V A
Sbjct: 9 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSI----------NKKFLLQLSGHDGGVWA 58
Query: 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR 299
L G L+ V ++ VF + + +GS D
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 300 TVRIWQRGKENC 311
T+ +W+ KE+
Sbjct: 119 TLHVWKLPKESS 130
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVW 209
+ + F I+N + K + + D + +V +V DG+ +
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 9e-05
Identities = 34/188 (18%), Positives = 72/188 (38%), Gaps = 14/188 (7%)
Query: 141 HWDAV-SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT 199
H +V + L + + + + D+ +++++ N K L + H+ V A+ + G++ +
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGGILVS 69
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG------------DGS 247
GS D +RVW+ + + V L + G S
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307
+ G + + + F L GH ++ + G+++ SGS D T+ +W
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189
Query: 308 KENCYRCM 315
+ C +
Sbjct: 190 QMKCLYIL 197
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 41/332 (12%), Positives = 96/332 (28%), Gaps = 34/332 (10%)
Query: 28 HHMIISCLAVHNS--LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKI 85
H + L + L+ ++ + V+D+ ++ + +I I
Sbjct: 52 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111
Query: 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145
T +D + VWK+ L + + + H +V
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDY-------PLVFHTPEENPYFVGVLRGHMASV 164
Query: 146 SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGR 205
+ ++ S S+D + +W+ + KCL ++ + + + + + S D
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265
IR+W+ + + LV L F + +
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDK--------------FLVSAAADGSIRGWDA 270
Query: 266 DHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325
+ + A+ ++L SGS + I+ A + +
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH--ANILKDADQI 327
Query: 326 KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
S+ G + + +G+ +
Sbjct: 328 WSV--------NFKGKTLVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (85), Expect = 0.002
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 277 GHTGALLCLINV-GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328
GH +++ + + + +G+ D+ +R++ + L GH+ V +L
Sbjct: 10 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWAL 59
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.8 bits (114), Expect = 4e-07
Identities = 40/296 (13%), Positives = 84/296 (28%), Gaps = 21/296 (7%)
Query: 72 SGSVKSITFHI--TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129
+ ++ +++ +F+A + I W I P V +I + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDI---STGISNRVFPDVHATMITGIKTTSKGD 68
Query: 130 VRRHKKRLWLEHWDAVSDLV--------VKQGLMYSVSWDRSFKIWNASNYKCLESVNKA 181
+ L+ A V ++ I A+ YK + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241
V S + + + V + S + T + T A +
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 242 LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTV 301
NG + + + A + LA+GS D +V
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248
Query: 302 RIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
+W K + + + V S++ ++ + +I S + IK W+
Sbjct: 249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--------TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 10/141 (7%)
Query: 175 LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233
++ V H A+ A+ S +G +++ A+G I W + + H
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW---------DISTGISNRVFPDVH 54
Query: 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLA 293
+ + + G L D VV A A + L ++ +A
Sbjct: 55 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 114
Query: 294 SGSADRTVRIWQRGKENCYRC 314
+ + + I+ GK
Sbjct: 115 VAACYKHIAIYSHGKLTEVPI 135
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 5e-07
Identities = 26/289 (8%), Positives = 67/289 (23%), Gaps = 15/289 (5%)
Query: 28 HHMIISCLAVHN--SLLYAASLNEINVFDLISDYSHVDTFSNDLSS-SGSVKSITFHITK 84
H ++ + + N +Y + V+D+ + D + ++S
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA 144
+ + + T ++ + V
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 145 VSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD------NGVVY 198
+ + + + I N ++ + +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 199 TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258
G + + + L H S V +L G S G D +
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 259 VVWERERDHRMVFAEALWGHTGALLCLI--NVGDLLASGSADRTVRIWQ 305
W + + ++L + +GS D+ +++
Sbjct: 290 NAWRTPYGASIF----QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 7e-06
Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 24/302 (7%)
Query: 67 NDLSSSGSVKSITFHI-TKIFTAHQDCKIRVWKITASRQHQLVSTLPTV-KDRLIRSV-- 122
N L+ V ++T T+ ++VW I+ VS L + +D IRS
Sbjct: 46 NTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 123 -------LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCL 175
+ + S ++ + +
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 176 ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235
+ ++ V +G ++ ++W + + + R S
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225
Query: 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295
+ +L G L G + V + + L G S
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS--LKFAYCGKWFVST 283
Query: 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355
D + W+ F V S IS I +GS + + V
Sbjct: 284 GKDNLLNAWRTPYGASI----FQSKESSSVLS-CDISVDDK------YIVTGSGDKKATV 332
Query: 356 WD 357
++
Sbjct: 333 YE 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 13/103 (12%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 177 SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235
+ + + ++ + + + + + ++E+S ++ + V L +H
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--------GNKWVQVHELKEHNG 52
Query: 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH 278
V + D + + + G DR VW + L +
Sbjct: 53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 95
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (109), Expect = 1e-06
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 155 MYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVW 209
+ + S D + I++ + AH+D VN ++ + + AD I+ W
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 36/288 (12%), Positives = 87/288 (30%), Gaps = 17/288 (5%)
Query: 72 SGSVKSITFHITKIFTAHQDCKIRVWKITASRQH--QLVSTLPTVKDRLIRSVLPNNYVT 129
+ + ++T + + + D +I W ++ Q L+ +L K + S+ ++ +
Sbjct: 13 NKGITALTVN--PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK 70
Query: 130 VRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189
V K + +V + + S + + +
Sbjct: 71 VNGITKHEFGSQPKVA---SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 127
Query: 190 VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249
+ + V + + + + + S A + G +L
Sbjct: 128 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 187
Query: 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE 309
R + + A + DL+A+GS D + I+ +
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV--K 245
Query: 310 NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
+ + L H+ V +L+ + S+ + S + IK W+
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETPST--------LVSSGADACIKRWN 285
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 25/293 (8%), Positives = 73/293 (24%), Gaps = 30/293 (10%)
Query: 71 SSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTV 130
+G + ++ +F D + + R + L T K +I
Sbjct: 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133
Query: 131 RRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV 190
++ + + ++ +++ K + + D A
Sbjct: 134 TISDNSRFIAYGF------PLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD 187
Query: 191 VSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250
+Y S +R V++ + E S+ ++ + N L
Sbjct: 188 ADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL---IPGSPNPTKLVPRSMTSE 243
Query: 251 SGGCDRW-IVVWERERDHRMVFAEALWGHTGALLCLI-----NVGDLLASGSADRTVRIW 304
+G D + + + ++L + +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
Query: 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
+ + + + +S+ ++ +G+I +
Sbjct: 304 DVKTRK-------VTEVKNNLTD-LRLSADRK------TVMVRKDDGKIYTFP 342
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (83), Expect = 0.003
Identities = 14/186 (7%), Positives = 37/186 (19%), Gaps = 30/186 (16%)
Query: 81 HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140
++ V + P +
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF---------------VIPLIPGSPNPT 233
Query: 141 HWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYT 199
S + + RS I + ++ + V +
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293
Query: 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259
G + ++ + + ++ + L L+ D + D I
Sbjct: 294 APEKGVLLKYDVKT--------------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
Query: 260 VWERER 265
+ E+
Sbjct: 340 TFPLEK 345
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 20/213 (9%), Positives = 62/213 (29%), Gaps = 18/213 (8%)
Query: 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV----NK 180
+ V ++ + + + + + + + + +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 181 AHEDAVNAVVVSDNGVVYTGSADGRIRVW-----ERSVVDHNKERKSRHMLVTTLVKHRS 235
++ A++ + S DGR+ V + H L
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 236 TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295
VN++ + L++ G D I W + ++ + +++ + ++L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI--KNFAKFNEDSVVKIACSDNILCLA 310
Query: 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328
++D T + + +E + + +
Sbjct: 311 TSDDTFKTNAAIDQT-------IELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 9/102 (8%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 178 VNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236
+ +A +D ++ + + + ++ S DG + V+ + +++++ + ++++
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY-------KFDIQAKNVDLLQSLRYKHP 58
Query: 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH 278
+ + L G + ++ A
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA 100
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 6e-05
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL 285
+V + ++ + + SLL D + V++ + + V + LLC
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 286 I---NVGDLLASGSADRTVRIWQRGKENCYRCM 315
N + G+ + ++ +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL 95
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 8e-04
Identities = 6/69 (8%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348
LL S D ++ +++ + + ++ P+ + ++ + +G+
Sbjct: 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC----NFIDNTDLQIYVGTVQ 78
Query: 349 LNGEIKVWD 357
Sbjct: 79 GEILKVDLI 87
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.002
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 83 TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW 142
+ D ++ V S + R + K L +
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-------------RLNLKDTNLAYP 253
Query: 143 DAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA 202
+ + +Y+ D WN K +++ K +ED+V + SDN + ++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC-LATS 312
Query: 203 DGRIRVWER 211
D +
Sbjct: 313 DDTFKTNAA 321
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184
V K + + S S D++ KIWN + K +++
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 185 AVNAVVVS-DNGVVYTGSADGRIRVWE 210
+ + + + SA+G I
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348
G +AS SAD+T++IW + + + + I + ++ S S
Sbjct: 250 GTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ------ALVSIS 300
Query: 349 LNGEIKVWD 357
NG I +
Sbjct: 301 ANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 9/127 (7%)
Query: 138 WLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVV 197
+ + S G V ++ D +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253
Query: 198 YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257
+ SAD I++W + + + T V R L + L S + +
Sbjct: 254 ASASADKTIKIWNVA---------TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 258 IVVWERE 264
I E
Sbjct: 305 INFVNPE 311
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 18/236 (7%), Positives = 49/236 (20%), Gaps = 14/236 (5%)
Query: 26 DPHHMIISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKI 85
P + L + + ++ S ++ +
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145
I + + + + + + + L
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 146 SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGR 205
D + + + K + + S R
Sbjct: 217 KDDKQD---PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273
Query: 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261
+ ++ K R ++ + H +A + G L+ GG + V+
Sbjct: 274 LAKYDL---------KQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 6e-05
Identities = 8/119 (6%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 154 LMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWER 211
M ++ + + + ++ +S + +++ + + G I +
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69
Query: 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMV 270
+ L + + ++ + A++ DG +++ + +
Sbjct: 70 ----DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 36.6 bits (83), Expect = 0.003
Identities = 29/304 (9%), Positives = 67/304 (22%), Gaps = 30/304 (9%)
Query: 16 CIASLKIP-SPDPHHMIISCLAVHNSLLYAASL--NEINVFDLIS--DYSHVDTFSNDLS 70
S +P P +++ N Y + +I DL + + H + S
Sbjct: 30 VYKSCVMPDKFGPGTAMMA---PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 86
Query: 71 SSGSVKSITF--HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPN--- 125
S+ S +++ + V + + P
Sbjct: 87 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ 146
Query: 126 -NYVTVRRHKKRLWLEH----WDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNK 180
+ D + + + + + ++
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206
Query: 181 AHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240
A D T + K+
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDL---------KTGKTHTQEFADLTELYFTG 257
Query: 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRT 300
+ G +R + ++ ++ R + A HT + GD L G
Sbjct: 258 LRSPKDPNQIYGVLNR-LAKYDLKQ--RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
Query: 301 VRIW 304
+ ++
Sbjct: 315 LAVF 318
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 1e-04
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 154 LMYSVSWDRSFKIWNASNYKCLESVN---KAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210
+V D + ++W+ + KC++ + + VV + NG + + S DG + +E
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.003
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313
+ + + + G A+ AD T+R+W C +
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ 287
Query: 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357
L+ + + + +++ + I S SL+G + ++
Sbjct: 288 KWT-LDKQQLGNQQVGVVATGNG------RIISLSLDGTLNFYE 324
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 152 QGLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209
L ++ + + + K ++ ++ AV+ +S +G + D RI +
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRDARIDMI 88
Query: 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM 269
D + ++ + ++ RS ++ + +G
Sbjct: 89 -----DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143
Query: 270 VFAEALWGHT 279
+ G T
Sbjct: 144 KQIVSTRGMT 153
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.68 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.4 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.17 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.14 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.12 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.02 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.02 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.93 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.91 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.84 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.75 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.98 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.67 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.44 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.17 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.09 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.06 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.98 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.98 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.82 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.58 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.55 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.5 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.48 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.41 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.11 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.01 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.68 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.32 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.69 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 94.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.12 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.29 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 89.78 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.61 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 85.95 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 84.69 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.37 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 80.74 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-45 Score=299.85 Aligned_cols=281 Identities=24% Similarity=0.417 Sum_probs=249.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
.....+|++ |.++|++|+|+ +++||||+.| +|+|||+ ++++.+.++.+ |...|.+++|+|++ ++++
T Consensus 7 ~~~~~~L~G-----H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~-~~~~~~~~~~~---h~~~V~~~~~~~~~~~~~~~ 77 (317)
T d1vyhc1 7 PPEKYALSG-----HRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFERTLKG---HTDSVQDISFDHSGKLLASC 77 (317)
T ss_dssp SSCSCEEEC-----CSSCEEEEEECSSSSEEEEEESSSCEEEEET-TTCCCCEEECC---CSSCEEEEEECTTSSEEEEE
T ss_pred CCccEEEcC-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCCEEEEEeC---CCCcEEEEeeeccccccccc
Confidence 334556776 99999999999 8999999999 9999999 99999999998 99999999999987 8899
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.++.+.+|+....+..... ..|...+.++.+++ +.+++++.|+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 127 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTM------------------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127 (317)
T ss_dssp ETTSCCCEEETTSSCEEECC------------------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cccccccccccccccccccc------------------------------ccccccceeeeccCCCceEEeeccCcceeE
Confidence 99999999998876543322 27888999999999 88999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
||+++++.+..+ ..|...+.+++++|++ .|++++.|+.|++|+++ .......+..|...+.++.|+|+
T Consensus 128 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~ 196 (317)
T d1vyhc1 128 WEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----------TKECKAELREHRHVVECISWAPE 196 (317)
T ss_dssp EETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------TCCEEEEECCCSSCEEEEEECCS
T ss_pred eecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeec----------cceeeEEEecCCCCceEEEEeec
Confidence 999999988888 7899999999999998 69999999999999998 45566777788888999888765
Q ss_pred --------------------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 246 --------------------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 246 --------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
+.++++++.|+.|++||+++++ ....+.+|...|.++.++++ +|++|+.||.|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 273 (317)
T d1vyhc1 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273 (317)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred cccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc---EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEE
Confidence 3578999999999999999877 45566789999999998876 9999999999999
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||++++ +++..+.+|.++|++++|+|+++ +|+||+.||+|++||
T Consensus 274 wd~~~~---~~~~~~~~h~~~V~~~~~s~~~~-------~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 274 WDYKNK---RCMKTLNAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECCTTS---CCCEEEECCSSCEEEEEECSSSS-------CEEEEETTSEEEEEC
T ss_pred EECCCC---cEEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEeC
Confidence 999987 66788899999999999999998 999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-44 Score=299.84 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=234.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceec--cccCCCCceEEEEEecCc--
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFS--NDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~-- 84 (357)
...+.++++. |...|+|++|+ |++||+|+ | .|+|||+ ........+. ....|.+.|.+++|+|++
T Consensus 40 ~~~~~~~~~~------H~~~V~~v~fs~~g~~latg~-dg~V~iWd~-~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~ 111 (337)
T d1gxra_ 40 RHARQINTLN------HGEVVCAVTISNPTRHVYTGG-KGCVKVWDI-SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111 (337)
T ss_dssp SEEEEEEEEC------CSSCCCEEEECSSSSEEEEEC-BSEEEEEET-TSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred CCceEEEECC------CCCcEEEEEECCCCCEEEEEE-CCEEEEEEc-cCCcccceeEEeeecCCCCcEEEEEEcCCCCE
Confidence 3556777776 99999999999 89999998 6 9999999 5543322211 111389999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
|++++.||+|++||+........ ..+ ..|...+.+++|+| .++++++.|+
T Consensus 112 l~s~~~dg~i~iwd~~~~~~~~~-~~~---------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~ 163 (337)
T d1gxra_ 112 LIVGGEASTLSIWDLAAPTPRIK-AEL---------------------------TSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp EEEEESSSEEEEEECCCC--EEE-EEE---------------------------ECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEeecccccccccccccccccc-ccc---------------------------cccccccccccccccccccccccccc
Confidence 99999999999999875543211 111 27888999999999 7899999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
.|++||+.++++.... ..|...+.+++|++++ .+++++.|+.+++||++ ..+.+..+ .|...|.+++
T Consensus 164 ~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~----------~~~~~~~~-~~~~~i~~l~ 231 (337)
T d1gxra_ 164 NIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR----------EGRQLQQH-DFTSQIFSLG 231 (337)
T ss_dssp CEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------TTEEEEEE-ECSSCEEEEE
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc----------cceeeccc-ccccceEEEE
Confidence 9999999998887777 7889999999999998 69999999999999997 23344433 4788999999
Q ss_pred EecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
|+|++++|++++.|+.|++||+++.... ....|...|.+++|+++ +|++++.||.|++||+.++ +.+...
T Consensus 232 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~- 303 (337)
T d1gxra_ 232 YCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS- 303 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE-
T ss_pred Ecccccccceeccccccccccccccccc----cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEc-
Confidence 9999999999999999999999987642 34568999999999876 9999999999999999987 334443
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.++|++++|+|+++ +|++|+.||+|+|||
T Consensus 304 ~~~~~v~~~~~s~d~~-------~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 304 KESSSVLSCDISVDDK-------YIVTGSGDKKATVYE 334 (337)
T ss_dssp ECSSCEEEEEECTTSC-------EEEEEETTSCEEEEE
T ss_pred cCCCCEEEEEEeCCCC-------EEEEEeCCCeEEEEE
Confidence 4788999999999998 999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-43 Score=287.98 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=230.3
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
+++.+.+++++ |+.||.+..+.|.+|++ ++.+..+.+.+ |...|++++|+|++ |++|+.||+|++||+.+.+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~-~~~~~~~~~~~---H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPV-GSLTDTEIYTE---HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEET-TCSSCCEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCEEEEEEC-CCCceeEEEcC---CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence 55677788888 88998886559999999 88888888987 99999999999987 9999999999999998876
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhhhcc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 179 (357)
...... +..|..+|.+++|+| +++++++. +..+++|++++++.+..+
T Consensus 92 ~~~~~~----------------------------~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l- 142 (311)
T d1nr0a1 92 HILKTT----------------------------IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL- 142 (311)
T ss_dssp CCEEEE----------------------------EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC-
T ss_pred cccccc----------------------------cccccCccccccccccccccccccccccccccccccccccccccc-
Confidence 432211 127889999999999 77888875 456999999999988888
Q ss_pred ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 180 KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
..|...|.+++|+|++ .|++|+.|+.|++||++ ..+.......|..+|+++.|+|+++++++++.|+.
T Consensus 143 ~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~----------~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~ 212 (311)
T d1nr0a1 143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP----------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212 (311)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT----------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccceeeeccccccccccccccc----------ccccccccccccccccccccCcccccccccccccc
Confidence 8899999999999988 38889999999999998 45677778889999999999999999999999999
Q ss_pred EEEEecccCCceeeee----eccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC-ceEEEEE
Q 038568 258 IVVWERERDHRMVFAE----ALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK-PVKSLVA 330 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~-~v~~~~~ 330 (357)
|++||+.++....... ...+|...|.+++|+++ +|++|+.||.|+|||++++ +++..+..|.. ....+.+
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~~~~ 289 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQLGI 289 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCEEEE
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceEEEE
Confidence 9999998876543332 23468899999999875 9999999999999999987 55666655543 2233444
Q ss_pred eeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++. .|++++.||.|++||
T Consensus 290 ~~~~~-------~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 290 IWTKQ-------ALVSISANGFINFVN 309 (311)
T ss_dssp EECSS-------CEEEEETTCCEEEEE
T ss_pred EecCC-------EEEEEECCCEEEEEe
Confidence 44555 789999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.2e-43 Score=290.20 Aligned_cols=288 Identities=17% Similarity=0.256 Sum_probs=244.1
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..+..++|++ |.++|++++|+ +++||||+.| .|+|||+ .+++.+..+.. |..+|.+++|+|++ +++
T Consensus 44 ~~~~~~tL~G-----H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~-~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~ 114 (340)
T d1tbga_ 44 QMRTRRTLRG-----HLAKIYAMHWGTDSRLLVSASQDGKLIIWDS-YTTNKVHAIPL---RSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTTEEEEEET-TTTEEEEEEEC---SCSCEEEEEECTTSSEEEE
T ss_pred ceeeeEEECC-----CCCCEEEEEECCCCCEEEEEECCCceeeeec-ccceeEEEEec---ccccEEeeEeeccceeeee
Confidence 3456667775 99999999999 8999999999 9999999 89999999988 99999999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKI 166 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i 166 (357)
++.|+.+++|+............ .+.+|........... ..+.....+.....
T Consensus 115 ~~~d~~i~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (340)
T d1tbga_ 115 GGLDNICSIYNLKTREGNVRVSR--------------------------ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp EETTCCEEEEESSSSCSCCCEEE--------------------------EECCCSSCEEEEEEEETTEEEEEETTTEEEE
T ss_pred ecccceeecccccccccccccce--------------------------ecccccccccccccccccccccccccccccc
Confidence 99999999999876543222111 1125666666666666 88888999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
++.......... ..+...+....+.+.+ .+++++.|+.|++||++ ...++..+.+|...|++++|+|+
T Consensus 169 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~----------~~~~~~~~~~h~~~i~~v~~~p~ 237 (340)
T d1tbga_ 169 WDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp EETTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----------TTEEEEEECCCSSCEEEEEECTT
T ss_pred cccccccccccc-cccceeEeeeccccccceeEEeecCceEEEEECC----------CCcEEEEEeCCCCCeEEEEECCC
Confidence 998776665555 6677788888888877 68999999999999998 55677788899999999999999
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
+++|++|+.||.|++||++....... .....+...+.+++|+++ +|++|+.||.|++||+.++ +++..+.+|.+
T Consensus 238 ~~~l~s~s~d~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~ 313 (340)
T d1tbga_ 238 GNAFATGSDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDN 313 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEeecccccccc-cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCC
Confidence 99999999999999999997765432 234556778899998876 9999999999999999987 67888999999
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++|+|+++ +|+|||.||.|++||
T Consensus 314 ~V~~l~~s~d~~-------~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 314 RVSCLGVTDDGM-------AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred CEEEEEEeCCCC-------EEEEEccCCEEEEeC
Confidence 999999999998 999999999999998
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.7e-43 Score=285.69 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=227.4
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH 89 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~ 89 (357)
++..++++| |.++|++++|+ +++||+|+.| .|++||+ ++++.++.+.. .|...|++++|+|++ +++++
T Consensus 2 g~~~~~~~G-----H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~--~h~~~v~~v~~~~~g~~~~~~ 73 (299)
T d1nr0a2 2 GSIDQVRYG-----HNKAITALSSSADGKTLFSADAEGHINSWDI-STGISNRVFPD--VHATMITGIKTTSKGDLFTVS 73 (299)
T ss_dssp TEEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TTCCEEECSSC--SCSSCEEEEEECTTSCEEEEE
T ss_pred CccceEcCC-----CCCCcEEEEECCCCCEEEEEcCCCeEEEEEC-CCCcEEEEEcC--CCCCcEEEEEeeccceeeccc
Confidence 455677776 99999999999 8999999999 9999999 88888877743 389999999999997 88999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd 168 (357)
.|+.+++|+.......... .....+...+.++++++ ..+++++.++.+.+|+
T Consensus 74 ~d~~v~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~ 126 (299)
T d1nr0a2 74 WDDHLKVVPAGGSGVDSSK---------------------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126 (299)
T ss_dssp TTTEEEEECSSSSSSCTTS---------------------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred ceeeEEEeccCCccccccc---------------------------cccccccccccccccccccccccccccccccccc
Confidence 9999999998754321111 01125677889999999 5556666678999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (357)
..... . ......+.+++++|++ .+++|+.|+.|++||++. . .........|...|++++|+|+++
T Consensus 127 ~~~~~---~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~------~---~~~~~~~~~~~~~i~~~~~~~~~~ 192 (299)
T d1nr0a2 127 HGKLT---E--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG------A---SVSEVKTIVHPAEITSVAFSNNGA 192 (299)
T ss_dssp TTEEE---E--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET------T---EEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccc---c--ccccccccccccccccccccccccccccccccccc------c---cccccccccccccccccccccccc
Confidence 64322 1 1344567889999998 589999999999999871 1 112223446889999999999999
Q ss_pred EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 248 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
+|++++.|+.|++||+.++........+.+|...|.+++|+++ +|++|+.||.|++||++++...........+...|
T Consensus 193 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 272 (299)
T d1nr0a2 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV 272 (299)
T ss_dssp EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcE
Confidence 9999999999999999988776666777889999999999876 99999999999999999875433333333445667
Q ss_pred EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 326 KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++.|.+ ++ +|+|++.||.|++||
T Consensus 273 ~~~~~~~-~~-------~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 273 NSVIWLN-ET-------TIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEEEE-TT-------EEEEEETTSCEEEEE
T ss_pred EEEEECC-CC-------EEEEEeCCCEEEEEe
Confidence 7776654 55 899999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-43 Score=295.10 Aligned_cols=289 Identities=25% Similarity=0.409 Sum_probs=223.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc---------------CCCCceEEEEEecCc--eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL---------------SSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~---------------~~~~~v~~l~~~~~~--l~~ 87 (357)
|++.|+||+|+ |++||+|+ | .|+|||+ .+++.+..+.... .|...|++++|+|++ |++
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEe-cccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence 99999999999 89999987 7 9999999 7777666554311 367789999999987 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
|+.||.|++||...++...... +|...|.++.+++ ..+++++.++.++
T Consensus 139 ~~~dg~v~i~~~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~i~ 188 (388)
T d1erja_ 139 GAEDRLIRIWDIENRKIVMILQ------------------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVR 188 (388)
T ss_dssp EETTSCEEEEETTTTEEEEEEC------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccccccccccccccccccc------------------------------cccccccccccccccccccccccceeee
Confidence 9999999999998876544332 7899999999999 7899999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
+||.++....... . +.....++.+.+ ++ .|++++.|+.|++||.+....... .........+|...|.+++|+
T Consensus 189 ~~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~s 263 (388)
T d1erja_ 189 IWDLRTGQCSLTL-S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER---LDSENESGTGHKDSVYSVVFT 263 (388)
T ss_dssp EEETTTTEEEEEE-E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE---EC------CCCSSCEEEEEEC
T ss_pred eeecccccccccc-c-cccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee---eccccccccCCCCCEEEEEEC
Confidence 9999987776665 3 344445555554 55 699999999999999873221110 011122345688999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCcee---------eeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcce
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMV---------FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
|++++|++++.||.|++||+++..... .......|...|.+++|+++ +|++|+.||.|++||++++
T Consensus 264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--- 340 (388)
T d1erja_ 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--- 340 (388)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---
T ss_pred CCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---
Confidence 999999999999999999997654321 22344568889999999876 9999999999999999987
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++..+.+|.+.|+++++++... .+.++.+|+||+.||+|++||
T Consensus 341 ~~~~~l~~H~~~V~~~~~~~~~~-~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 341 NPLLMLQGHRNSVISVAVANGSS-LGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CEEEEEECCSSCEEEEEECSSCT-TCTTCEEEEEEETTSEEEEEE
T ss_pred cEEEEEeCCCCCEEEEEEecCcc-cCCCCCEEEEEeCCCEEEEEe
Confidence 67788999999999998754321 122233999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-41 Score=280.00 Aligned_cols=315 Identities=21% Similarity=0.319 Sum_probs=240.3
Q ss_pred ccceecccccCCCCCCCccce-eEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEee
Q 038568 12 FKHHCIASLKIPSPDPHHMII-SCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAH 89 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i-~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 89 (357)
.+.++.++|++ |.+.| +|+.|+|++||||+.| +|+|||+ .++++++++.+ |...|.+++|+|+.|++++
T Consensus 4 ~~~~~~~~l~G-----H~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~-~~~~~~~~~~~---h~~~V~~v~~~~~~l~s~s 74 (342)
T d2ovrb2 4 GELKSPKVLKG-----HDDHVITCLQFCGNRIVSGSDDNTLKVWSA-VTGKCLRTLVG---HTGGVWSSQMRDNIIISGS 74 (342)
T ss_dssp SCCCCCEEEEC-----STTSCEEEEEEETTEEEEEETTSCEEEEET-TTCCEEEECCC---CSSCEEEEEEETTEEEEEE
T ss_pred CCCCcCEEECC-----cCCceEEEEEECCCEEEEEeCCCeEEEEEC-CCCCEEEEEeC---CCCCEEEEEeCCCccccce
Confidence 35667778886 99987 5677789999999999 9999999 99999999998 9999999999999999999
Q ss_pred cCCeEEEEecCCccceeeeeecCccc------cceeeeecCCCeEEEecccc----cccccccccEEEEEEecCeEEEEe
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVK------DRLIRSVLPNNYVTVRRHKK----RLWLEHWDAVSDLVVKQGLMYSVS 159 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~l~~~~ 159 (357)
.|+.+++|+................. .........+..+.+..... ..+..+.............+++++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 154 (342)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence 99999999998765433322211110 00011111112221111111 111122222223333338899999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
.|+.|++||.+..+.+..+ ..|...+..+.+ ++ .+++++.||.|++||++ ....+..+..|...+.
T Consensus 155 ~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~----------~~~~~~~~~~~~~~v~ 221 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE----------TGNCIHTLTGHQSLTS 221 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT----------TCCEEEEECCCCSCEE
T ss_pred CCCeEEEeecccceeeEEE-cCcccccccccC--CCCEEEEEeCCCeEEEeecc----------cceeeeEeccccccee
Confidence 9999999999988888887 677776666655 44 79999999999999998 4566778888999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeee-
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAF- 317 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~- 317 (357)
++++++ ++|++++.|+.|++||+...+..........|...+.++.++++++++|+.||.|++||+++++..+.+..
T Consensus 222 ~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 222 GMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred EEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence 888765 59999999999999999988876666666778889999999999999999999999999999854443332
Q ss_pred -ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe----EEecC
Q 038568 318 -LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE----IKVWD 357 (357)
Q Consensus 318 -~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~----v~~wd 357 (357)
..+|...|++++|+|++. +|++|+.||+ |++||
T Consensus 300 ~~~~~~~~v~~v~~s~~~~-------~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 300 ESGGSGGVVWRIRASNTKL-------VCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp TTGGGTCEEEEEEECSSEE-------EEEEECSSSSSCCEEEEEE
T ss_pred cCCCCCCCEEEEEECCCCC-------EEEEEeCCCCCeeEEEEEe
Confidence 236788999999999987 9999999985 99997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-41 Score=284.86 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=226.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
+.++|+|++|+ |++||+|+.| .|+|||. ++++ .+..+.+ |.++|.+|+|+|++ |++++.|++|++||+.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~-~~~~~~~~~~l~g---H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKE---HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEE-ETTEEEEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEC-CCCCEEEEEEecC---CCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 45789999999 8999999999 9999999 6554 5677787 99999999999987 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhh--
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLE-- 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-- 176 (357)
++........ .+|...|.+++|+| +.|++++.|+.+++|++.......
T Consensus 82 ~~~~~~~~~~----------------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 82 GRTWKPTLVI----------------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133 (371)
T ss_dssp TTEEEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred cccccccccc----------------------------ccccccccccccccccccceeecccCcceeeeeecccccccc
Confidence 7654333221 27888999999999 899999999999999987655432
Q ss_pred -hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccc--------cccceeeeeEeeccccceeEEEEecCC
Q 038568 177 -SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE--------RKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 177 -~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
.....|...|.+++|+|++ +|++|+.|+.|++||......... .............|...|.+++|+|++
T Consensus 134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 213 (371)
T d1k8kc_ 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213 (371)
T ss_dssp EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred cccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence 2225678899999999998 699999999999999864322111 111234556667889999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCccee-e----------
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYR-C---------- 314 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~-~---------- 314 (357)
++|++++.|+.|++||+.++.. +..+..|..+|.+++|+++ .+++++.|+.+++|......... .
T Consensus 214 ~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
T d1k8kc_ 214 SRVAWVSHDSTVCLADADKKMA---VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290 (371)
T ss_dssp SEEEEEETTTEEEEEEGGGTTE---EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred ccccccccCCcceEEeeecccc---eeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCcccc
Confidence 9999999999999999998774 4556678999999999876 44455567877776543321000 0
Q ss_pred ---------------------------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 ---------------------------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ---------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
......|.+.|+++++.+... .....|+|+|.||.|++||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~---~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---AKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT---TSCSEEEEEETTSEEEEEE
T ss_pred ccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCC---cceEEEEEEcCCCeEEEEe
Confidence 000124888999999998764 1122689999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-40 Score=275.27 Aligned_cols=301 Identities=19% Similarity=0.294 Sum_probs=227.7
Q ss_pred cccccCCCCCCCccce-eEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCe
Q 038568 17 IASLKIPSPDPHHMII-SCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCK 93 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i-~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~ 93 (357)
..+|++ |.+.| +|++|++++||||+.| +|+|||+ .+++.+.++.+ |.++|++++|+|+. |++++.|++
T Consensus 5 ~~tL~G-----H~~~vitc~~~~~~~l~tgs~Dg~i~vWd~-~~~~~~~~l~~---H~~~V~~l~~s~~~~l~s~s~D~~ 75 (355)
T d1nexb2 5 RTTLRG-----HMTSVITCLQFEDNYVITGADDKMIRVYDS-INKKFLLQLSG---HDGGVWALKYAHGGILVSGSTDRT 75 (355)
T ss_dssp EEEEEC-----CSSSCEEEEEEETTEEEEEETTTEEEEEET-TTTEEEEEEEC---CSSCEEEEEEETTTEEEEEETTCC
T ss_pred cEEECC-----cCCCcEEEEEECCCEEEEEeCCCeEEEEEC-CCCcEEEEEEC---CCCCEEEEEEcCCCEEEEEecccc
Confidence 345675 98875 7899999999999999 9999999 89999999998 99999999999987 999999999
Q ss_pred EEEEecCCccceeeeeecCccccce----------eeeecCCCeEEEecccc---------------------------c
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRL----------IRSVLPNNYVTVRRHKK---------------------------R 136 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---------------------------~ 136 (357)
|++|++...+............... ......++.+.+..... .
T Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 9999998776543333222111111 11111222222211100 1
Q ss_pred ccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 137 LWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
....|...+......+++++++..|+.|++||+++++.+... ..+...+.++.++|++ .+++++.|+.|++||++
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--- 231 (355)
T d1nexb2 156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE--- 231 (355)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred eeeeccccccccccccceeeeecccceeeeeecccccceeee-eccccccccccccccceeeecccccceEEeeecc---
Confidence 112344556666666689999999999999999999888877 7788889999999988 69999999999999998
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceE---EEeecCceE
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALL---CLINVGDLL 292 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l 292 (357)
....+..+.+|...|.++++++ ++|++++.||.|++||+++..... ..|...+. .+..++.++
T Consensus 232 -------~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l 297 (355)
T d1nexb2 232 -------NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-----SYHHTNLSAITTFYVSDNIL 297 (355)
T ss_dssp -------TCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-----EEECTTCCCCCEEEECSSEE
T ss_pred -------cccccccccccccccccccccc--ceeeeeecccccccccccccceec-----ccccCCceEEEEEcCCCCEE
Confidence 4567778889999999999874 699999999999999998776432 22333333 333344455
Q ss_pred EEecCCCeEEEeeCCCCcceeee-eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 293 ASGSADRTVRIWQRGKENCYRCM-AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++ +.||.|++||++++ +++ ..+.+|.++|++++|+|+. ++++++.||+++||
T Consensus 298 ~~-g~d~~i~vwd~~tg---~~~~~~~~~~~~~V~~v~~~~~~--------~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 298 VS-GSENQFNIYNLRSG---KLVHANILKDADQIWSVNFKGKT--------LVAAVEKDGQSFLE 350 (355)
T ss_dssp EE-EETTEEEEEETTTC---CBCCSCTTTTCSEEEEEEEETTE--------EEEEEESSSCEEEE
T ss_pred EE-EeCCEEEEEECCCC---CEEEEEecCCCCCEEEEEEcCCe--------EEEEEECCCcEEEE
Confidence 55 56899999999998 344 3467899999999999863 78899999997765
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-39 Score=258.33 Aligned_cols=280 Identities=24% Similarity=0.390 Sum_probs=226.0
Q ss_pred cccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEE
Q 038568 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIR 95 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~ 95 (357)
++.++...+ |...|+|++|++++||||+.| +|+|||+ ++++.++++.+ |.+.|++++|+++.|++|+.|+.|+
T Consensus 5 ~~~i~~~~~--~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~-~~~~~~~~l~~---H~~~V~~v~~~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 5 LQRIHCRSE--TSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKRILTG---HTGSVLCLQYDERVIITGSSDSTVR 78 (293)
T ss_dssp CCCEECCCS--SCCCEEEEECCSSEEEEEESSSCEEEEES-SSCCEEEEECC---CSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EEEEeccCC--CCCCEEEEEEcCCEEEEEeCCCeEEEEEC-CCCcEEEEEec---CCCCEeeeecccceeeccccccccc
Confidence 334444445 999999999999999999999 9999999 99999999998 9999999999887899999999999
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhh
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
+|++..+....... .+.............++++..++.+.+||..+....
T Consensus 79 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (293)
T d1p22a2 79 VWDVNTGEMLNTLI------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128 (293)
T ss_dssp EEESSSCCEEEEEC------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred cccccccccccccc------------------------------ccccccccccccccceeecccccceeEeeccccccc
Confidence 99998876544332 222233333333388999999999999999876543
Q ss_pred hhc--cccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 176 ESV--NKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 176 ~~~--~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
... ...|...+..+.+.+. .+++++.|+.+++||++ ..+.+..+.++...+..+.++ +.++++++
T Consensus 129 ~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 195 (293)
T d1p22a2 129 TLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTS----------TCEFVRTLNGHKRGIACLQYR--DRLVVSGS 195 (293)
T ss_dssp EEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETT----------TCCEEEEEECCSSCEEEEEEE--TTEEEEEE
T ss_pred cccccccccccccccceeccc-ccccccCCCceeeecCC----------CCcEEEEEcccccccccccCC--CCeEEEec
Confidence 222 1567778887777654 67788999999999998 455677788888888888776 46899999
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc------ceeeeeeecCCcCceEE
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN------CYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~h~~~v~~ 327 (357)
.||.|++||+++... .....+|...+.++.+++.+|++|+.||.|++||+.... ....+..+.+|.++|++
T Consensus 196 ~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~ 272 (293)
T d1p22a2 196 SDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272 (293)
T ss_dssp TTSCEEEEETTTCCE---EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred CCCEEEEEeccccee---eeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEE
Confidence 999999999998774 455667888899999888899999999999999975421 23467788999999999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++ . +|+|||.||+|++||
T Consensus 273 v~~d~--~-------~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 273 LQFDE--F-------QIVSSSHDDTILIWD 293 (293)
T ss_dssp EEECS--S-------CEEECCSSSEEEEEC
T ss_pred EEEcC--C-------EEEEEecCCEEEEeC
Confidence 99954 4 899999999999998
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-39 Score=263.47 Aligned_cols=253 Identities=16% Similarity=0.140 Sum_probs=203.0
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCcccc--ceeccccCCCCceEEEEEecCc--
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHV--DTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
......+.+.+ |.+.|++++|+ |++||+|+.| .|+|||+ .+.+.. ..+.. |..+|.+++|+|++
T Consensus 46 ~~~~~~~~~~~-----H~~~v~~~~~sp~g~~latg~~dg~i~iwd~-~~~~~~~~~~~~~---~~~~v~~v~~s~d~~~ 116 (311)
T d1nr0a1 46 GSLTDTEIYTE-----HSHQTTVAKTSPSGYYCASGDVHGNVRIWDT-TQTTHILKTTIPV---FSGPVKDISWDSESKR 116 (311)
T ss_dssp TCSSCCEEECC-----CSSCEEEEEECTTSSEEEEEETTSEEEEEES-SSTTCCEEEEEEC---SSSCEEEEEECTTSCE
T ss_pred CCCceeEEEcC-----CCCCEEEEEEeCCCCeEeccccCceEeeeee-ecccccccccccc---ccCccccccccccccc
Confidence 34455556664 99999999999 9999999999 9999999 665543 44666 99999999999987
Q ss_pred eEEeec--CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEe
Q 038568 85 IFTAHQ--DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVS 159 (357)
Q Consensus 85 l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~ 159 (357)
|++++. +..+++|++++++....+ .+|...|.+++|+| + .+++|+
T Consensus 117 l~~~~~~~~~~~~v~~~~~~~~~~~l------------------------------~~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 117 IAAVGEGRERFGHVFLFDTGTSNGNL------------------------------TGQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCC------------------------------CCCSSCEEEEEECSSSSCEEEEEE
T ss_pred cccccccccccccccccccccccccc------------------------------cccccccccccccccceeeecccc
Confidence 777765 456999999887654332 28889999999998 3 588999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
.||.|++||+++++....+ ..|...|+++.++|++ ++++++.|+.|++||++........ ........+|...|+
T Consensus 167 ~d~~i~i~d~~~~~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF---EDDSLKNVAHSGSVF 242 (311)
T ss_dssp TTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC---BCTTSSSCSSSSCEE
T ss_pred ccccccccccccccccccc-ccccccccccccCccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 9999999999999988888 7899999999999998 5899999999999998722111000 011122346889999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCC
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
+++|+|++++|++|+.||.|+|||+++++....+.....+...+.++.|+++.|++++.||.|++||.+
T Consensus 243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999999999999999999998875444433233345667889999999999999999999974
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-38 Score=257.40 Aligned_cols=265 Identities=18% Similarity=0.189 Sum_probs=211.7
Q ss_pred ceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecC
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQD 91 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d 91 (357)
.+++++|++ |.++|++++|+. |+||+.| +|++||+ .++. .+ |...|.+++++++. +++++.|
T Consensus 3 ~~~i~~l~g-----H~~~I~~l~~s~--l~sgs~Dg~v~~Wd~-~~~~-----~~---h~~~V~~~~~~~~~~~~s~s~D 66 (287)
T d1pgua2 3 DEVLKTISG-----HNKGITALTVNP--LISGSYDGRIMEWSS-SSMH-----QD---HSNLIVSLDNSKAQEYSSISWD 66 (287)
T ss_dssp EEEEEEECC-----CSSCEEEEETTT--TEEEETTSCEEETTT-TEEE-----CC---CCSCEEEEECCSTTCCEEEETT
T ss_pred cceeEEECC-----CCCceEEEEECc--EEEEeCCCeEEEEEC-CCCC-----CC---CCCCEEEEEecCCCeEEEEeec
Confidence 467788886 999999999976 9999999 9999999 6532 34 99999999999887 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcC
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~ 170 (357)
+++++|++...+ ....+..+.+.+ ..++..+.++.+.+|+..
T Consensus 67 ~~v~~w~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (287)
T d1pgua2 67 DTLKVNGITKHE-------------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSF 109 (287)
T ss_dssp TEEEETTEEEEE-------------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETT
T ss_pred cccccccccccc-------------------------------------cccceeeeeeccCCceEEEeecccceeeecc
Confidence 999999976431 223456777777 666777778889999999
Q ss_pred cchhhhhccccccccEEEEEEecCC-eEEEEeCC-CeEEEEEccccccccccccceeeee-EeeccccceeEEEEecCCC
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD-GRIRVWERSVVDHNKERKSRHMLVT-TLVKHRSTVNALALNGDGS 247 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 247 (357)
+++.+..+ .....+.+ +++++ .+++++.+ +.+++|++. ...... ....+...+++++|+|++.
T Consensus 110 ~~~~~~~~--~~~~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~ 175 (287)
T d1pgua2 110 TGDIIKSV--RLNSPGSA--VSLSQNYVAVGLEEGNTIQVFKLS----------DLEVSFDLKTPLRAKPSYISISPSET 175 (287)
T ss_dssp TCCEEEEE--ECSSCEEE--EEECSSEEEEEETTTSCEEEEETT----------EEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred ceeeeeec--cccceeee--eeccCcceeeeccccceeeeeecc----------ccceeeeeeeccCCceeEEEeccCcc
Confidence 88887776 33344444 45555 56666655 579999986 222222 2335778899999999999
Q ss_pred EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC------------ceEEEecCCCeEEEeeCCCCcceeee
Q 038568 248 LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG------------DLLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 248 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
+|++|+.||.|++||+.++.. ....+.+|...|.+++|+| .+|++|+.|+.|++||++++. +.+
T Consensus 176 ~l~~g~~dg~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~ 251 (287)
T d1pgua2 176 YIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KII 251 (287)
T ss_dssp EEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCE
T ss_pred ccccccccccccceeeccccc--ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--eEE
Confidence 999999999999999987764 2334668999999998864 389999999999999998753 567
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+.+|.+.|++++|+|++ .|+|+|.||.|++||
T Consensus 252 ~~~~~h~~~V~~v~~~~~~--------~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 252 KALNAHKDGVNNLLWETPS--------TLVSSGADACIKRWN 285 (287)
T ss_dssp EETTSSTTCEEEEEEEETT--------EEEEEETTSCEEEEE
T ss_pred EEeCCCCCCeEEEEECCCC--------EEEEEECCCeEEEEE
Confidence 7788999999999999986 688999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-37 Score=253.04 Aligned_cols=280 Identities=18% Similarity=0.214 Sum_probs=209.4
Q ss_pred cceeEEEEe--cceEEEeeCC--ceEEEeccCCc--cccceeccccCC-CCceEEEEEecC--c--eEEeecCCeEEEEe
Q 038568 30 MIISCLAVH--NSLLYAASLN--EINVFDLISDY--SHVDTFSNDLSS-SGSVKSITFHIT--K--IFTAHQDCKIRVWK 98 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d--~i~iw~~~~~~--~~~~~~~~~~~~-~~~v~~l~~~~~--~--l~~~~~d~~i~vwd 98 (357)
+.+++++|+ ++.|+.++.+ .|+.|+. ... ..+..+.+ | ...|++++|+|+ + |++|+.||+|++||
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~-~~~~~~~~~~~~g---h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd 93 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDD-GDSKVPPVVQFTG---HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 93 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCS-SCCSSCSEEEECT---TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeC-CCCCccceEEEeC---CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence 357889999 8899888766 5677776 332 33455655 6 568999999984 2 88999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe--cCCeEEEEEcCcchh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS--WDRSFKIWNASNYKC 174 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~ 174 (357)
+..++....+.... ...+..|.++|.+++|++ .++++++ .++.+++|+..+++.
T Consensus 94 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (325)
T d1pgua1 94 WTFDKESNSVEVNV----------------------KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS 151 (325)
T ss_dssp EEEEGGGTEEEEEE----------------------EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred ecCCcceeeeeccc----------------------ccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence 98765443332110 012236888999999999 6666665 467899999999998
Q ss_pred hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEEE
Q 038568 175 LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLFS 251 (357)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 251 (357)
+..+ ..|...|.+++|+|++ .+++++.|+.+++||.+. .+ ..........|...|.+++|+|+ +.+|++
T Consensus 152 ~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~------~~-~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 152 LGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FK-FSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp EEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BE-EEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ceee-eecccccccccccccccceEEEeecccccccccccc------cc-cceecccccCCCCccEEeeeccccceeccc
Confidence 8888 7899999999999987 478899999999999861 11 11222334567888999999996 679999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccce----EEEeec-CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcC--c
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGAL----LCLINV-GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEK--P 324 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v----~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~ 324 (357)
++.|+.|++||+++++. ...+.+|..++ .++.+. +.+|++++.|+.|+|||++++ +++..+..|.. .
T Consensus 224 ~~~d~~i~iwd~~~~~~---~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 224 VGSDRKISCFDGKSGEF---LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLG 297 (325)
T ss_dssp EETTCCEEEEETTTCCE---EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGG
T ss_pred cccccceeeeeeccccc---cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEEEecCCccc
Confidence 99999999999998874 44556666655 444443 459999999999999999987 55555554443 3
Q ss_pred eEEEEE--eeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLVA--ISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~~--~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+..+++ .+++ +|+++|.||.|++||
T Consensus 298 ~~~~~~~~~~~~--------~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 298 NQQVGVVATGNG--------RIISLSLDGTLNFYE 324 (325)
T ss_dssp GCEEEEEEEETT--------EEEEEETTSCEEEEE
T ss_pred CeEEEEEECCCC--------EEEEEECCCEEEEEE
Confidence 444444 4443 789999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-37 Score=254.18 Aligned_cols=242 Identities=19% Similarity=0.316 Sum_probs=202.1
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.+.++. |...|++++|+|++ |++|+ ||.|+|||+.++.....+....
T Consensus 43 ~~~~~~~----H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~------------------------- 92 (337)
T d1gxra_ 43 RQINTLN----HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD------------------------- 92 (337)
T ss_dssp EEEEEEC----CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-------------------------
T ss_pred eEEEECC----CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee-------------------------
Confidence 4455553 99999999999987 77776 8999999998765433332211
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
..+|.+.|.+++|+| ++|++++.||.|++||+.... ....+ ..|...+.++.++|++ .+++++.|+.|++||++
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 127889999999999 889999999999999987543 44445 6788899999999998 68999999999999997
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
..+.......|...|.+++|++++..+++++.|+.|++||+++++.+.. ..|...+.+++|+++
T Consensus 172 ----------~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~----~~~~~~i~~l~~~~~~~ 237 (337)
T d1gxra_ 172 ----------NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ----HDFTSQIFSLGYCPTGE 237 (337)
T ss_dssp ----------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEECTTSS
T ss_pred ----------cccccccccccccccccccccccccccccccccccccccccccceeecc----cccccceEEEEEccccc
Confidence 4456667778999999999999999999999999999999998764332 247888999998776
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.|+.+++||+++++ ......|...|++++|+|+++ +|++++.||.|++||
T Consensus 238 ~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~i~~v~~s~~g~-------~l~s~s~Dg~i~iwd 293 (337)
T d1gxra_ 238 WLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGK-------WFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred ccceeccccccccccccccc----cccccccccccceEEECCCCC-------EEEEEeCCCeEEEEE
Confidence 99999999999999999863 234578999999999999998 999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.1e-37 Score=256.70 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=196.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..++|+|++|+|++ |++|+.|+.|++||.++++.. .+..+ .+|.++|.++
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l---------------------------~gH~~~V~~l 57 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHEL---------------------------KEHNGQVTGV 57 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEE---------------------------ECCSSCEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEe---------------------------cCCCCCEEEE
Confidence 56889999999997 889999999999999876432 22222 3899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhh--hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCL--ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
+|+| ++|++++.|++|++||+.++... ..+ ..|...|.+++|+|++ .|++++.|+.+++|++. .....
T Consensus 58 ~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~------~~~~~ 130 (371)
T d1k8kc_ 58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFE------QENDW 130 (371)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE------TTTTE
T ss_pred EECCCCCEEEEEECCCeEEEEeeccccccccccc-ccccccccccccccccccceeecccCcceeeeee------ccccc
Confidence 9999 89999999999999999866533 333 5678899999999999 59999999999999987 33333
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc---------------eeeeeeccCCccceEEEeec
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR---------------MVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------~~~~~~~~~~~~~v~~~~~~ 288 (357)
.........|...|.+++|+|++++|++|+.|+.|++||...... ........+|...+.+++|+
T Consensus 131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 210 (371)
T d1k8kc_ 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210 (371)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence 334455667889999999999999999999999999999864321 11234556788899999998
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++ +|++++.|+.|++||+.++ +.+..+..|..+|++++|+|++. +|++|+ |+.+++|
T Consensus 211 ~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~s~~fs~d~~-------~la~g~-d~~~~~~ 269 (371)
T d1k8kc_ 211 ANGSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITESS-------LVAAGH-DCFPVLF 269 (371)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETTE-------EEEEET-TSSCEEE
T ss_pred cccccccccccCCcceEEeeecc---cceeeeecccccceeeeecCCCC-------EEEEEc-CCceEEE
Confidence 76 9999999999999999987 56777889999999999999987 777665 7766665
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.8e-37 Score=248.85 Aligned_cols=244 Identities=16% Similarity=0.231 Sum_probs=200.3
Q ss_pred ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
|+..+.+++ |..+|++|+|+|++ |++|+.||+|++||+++++....+.
T Consensus 2 g~~~~~~~G---H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYG---HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---------------------------
T ss_pred CccceEcCC---CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---------------------------
Confidence 456677888 99999999999987 9999999999999999876544332
Q ss_pred ccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccc
Q 038568 137 LWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
..|...|.+++|+| ..+++++.|+.+++|+...... .......+...+.+++++|++.+++++.++.+++|+..
T Consensus 52 --~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~- 128 (299)
T d1nr0a2 52 --DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG- 128 (299)
T ss_dssp --CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-
T ss_pred --CCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccc-
Confidence 17889999999999 7788899999999999865432 12222456778999999999987777778899999965
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L 291 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 291 (357)
+.... .....+.+++|+|++++|++|+.||.|++||+++.+... .....|...|.+++++++ +
T Consensus 129 -----------~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 129 -----------KLTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE--VKTIVHPAEITSVAFSNNGAF 193 (299)
T ss_dssp -----------EEEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE--EEEEECSSCEEEEEECTTSSE
T ss_pred -----------ccccc--ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 11111 134457889999999999999999999999998765322 223468889999999876 9
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++++.|+.|++||+.++........+.+|..+|++++|+|+++ +|++|+.||.|++||
T Consensus 194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-------RLATGSLDNSVIVWN 252 (299)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-------EEEEEETTSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-------ceEEEcCCCEEEEEE
Confidence 99999999999999998766666777888999999999999998 999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.2e-36 Score=244.50 Aligned_cols=247 Identities=26% Similarity=0.459 Sum_probs=216.1
Q ss_pred EEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE
Q 038568 52 VFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129 (357)
Q Consensus 52 iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
.|.. ......+|++ |.++|++|+|+|++ |++|+.||+|++||+.+++....+.
T Consensus 2 ~w~p--~~~~~~~L~G---H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-------------------- 56 (317)
T d1vyhc1 2 EWIP--RPPEKYALSG---HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-------------------- 56 (317)
T ss_dssp CCCC--CSSCSCEEEC---CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------------------
T ss_pred ccCC--CCCccEEEcC---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--------------------
Confidence 4654 3355678888 99999999999987 9999999999999999887654442
Q ss_pred EecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeE
Q 038568 130 VRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRI 206 (357)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i 206 (357)
+|...|.+++|++ .+++++..++.+..|+....+....+ ..+...+.++.++|++ .+++++.|+.+
T Consensus 57 ----------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 125 (317)
T d1vyhc1 57 ----------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTI 125 (317)
T ss_dssp ----------CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ----------CCCCcEEEEeeeccccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcce
Confidence 7899999999999 88999999999999999888877777 7889999999999988 69999999999
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEe
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
++||++ .......+..|...+.+++|+|++++|++++.|+.|++|++.+... ...+.+|...+.++.
T Consensus 126 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~---~~~~~~~~~~i~~~~ 192 (317)
T d1vyhc1 126 KMWEVQ----------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC---KAELREHRHVVECIS 192 (317)
T ss_dssp EEEETT----------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEE
T ss_pred eEeecc----------cceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecccee---eEEEecCCCCceEEE
Confidence 999998 4556777888999999999999999999999999999999998763 445567788887777
Q ss_pred ecC----------------------ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEE
Q 038568 287 NVG----------------------DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSI 344 (357)
Q Consensus 287 ~~~----------------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l 344 (357)
+.+ .++++++.|+.|++||++++ +++..+.+|..+|++++|+|+++ +|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-------~l 262 (317)
T d1vyhc1 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGK-------FI 262 (317)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-------CE
T ss_pred EeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEECCCCC-------EE
Confidence 653 26899999999999999987 67788899999999999999998 99
Q ss_pred EEcCCCCeEEecC
Q 038568 345 GSGSLNGEIKVWD 357 (357)
Q Consensus 345 ~s~~~dg~v~~wd 357 (357)
++|+.||.|++||
T Consensus 263 ~s~~~dg~i~iwd 275 (317)
T d1vyhc1 263 LSCADDKTLRVWD 275 (317)
T ss_dssp EEEETTTEEEEEC
T ss_pred EEEECCCeEEEEE
Confidence 9999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-35 Score=248.53 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=207.1
Q ss_pred CccceeEEEEecceEEEeeCC-ceEEEeccCCcccc----ceeccccCCCCceEEEEEe------cC-c--eEEeecCCe
Q 038568 28 HHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHV----DTFSNDLSSSGSVKSITFH------IT-K--IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~----~~~~~~~~~~~~v~~l~~~------~~-~--l~~~~~d~~ 93 (357)
|.+.|.++++++++|+||+.| +|+|||. ...+.. ..... ..|...+..+... +. . +++++.||.
T Consensus 13 H~~~I~~v~~~~~~l~S~S~D~~iriWd~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~ 90 (393)
T d1sq9a_ 13 HDADIFSVSACNSFTVSCSGDGYLKVWDN-KLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90 (393)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEES-BCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred ccCccEEEEEeCCEEEEEECCCeEEEEEC-CCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence 999999999999999999999 9999997 543321 11111 1155554444332 11 1 778999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-------CeEEEEecCCeEEE
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-------GLMYSVSWDRSFKI 166 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i 166 (357)
|++|++.............. .......+...+..+++.+ .++++++.||.+++
T Consensus 91 v~~w~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 91 LLFYRITREDETKKVIFEKL--------------------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp EEEEEEEECTTTCCEEEEEE--------------------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred EEEEEccCCCceeeeecccc--------------------ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 99999876543222211100 0000013445566666655 57899999999999
Q ss_pred EEcCcchhhh-h----------------ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeE
Q 038568 167 WNASNYKCLE-S----------------VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT 229 (357)
Q Consensus 167 wd~~~~~~~~-~----------------~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (357)
|++....... . ....+...+.+++|+|+++|++|+.|+.|++||++..+.. ...+....
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~----~~~~~~~~ 226 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPL----YNFESQHS 226 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEE----EEEECCC-
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccc----cccccccc
Confidence 9985322100 0 0123445688999999999999999999999999722110 11223345
Q ss_pred eeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceeeee----------eccCCccceEEEeecCc--eEEE
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVFAE----------ALWGHTGALLCLINVGD--LLAS 294 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~--~l~~ 294 (357)
+.+|..+|++++|+|++++|++|+.|+ .|++||+++++....+. .+.+|...|++++|+|+ +|++
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S 306 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence 567999999999999999999999987 49999999876543332 33589999999999886 9999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCce---------------------EEEEEeeCCCCC---CCCeEEEEEcCCC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPV---------------------KSLVAISSSSSA---SNGIVSIGSGSLN 350 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v---------------------~~~~~~~~~~~~---~~~~~~l~s~~~d 350 (357)
|+.|++|++||++++ +++..+.+|.+.| .++.|.+.+... ......|++++.|
T Consensus 307 ~s~D~~v~vWd~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 383 (393)
T d1sq9a_ 307 AGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 383 (393)
T ss_dssp EETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred ECCCCEEEEEECCCC---CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcC
Confidence 999999999999998 6778888886554 445555443211 1112358888999
Q ss_pred CeEEec
Q 038568 351 GEIKVW 356 (357)
Q Consensus 351 g~v~~w 356 (357)
+.||+|
T Consensus 384 ~~ir~~ 389 (393)
T d1sq9a_ 384 RSIRWF 389 (393)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 999988
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-35 Score=246.58 Aligned_cols=283 Identities=19% Similarity=0.299 Sum_probs=207.2
Q ss_pred EEeeCC-ceEEEeccCCccccc-eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccce
Q 038568 43 YAASLN-EINVFDLISDYSHVD-TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRL 118 (357)
Q Consensus 43 ~t~~~d-~i~iw~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 118 (357)
..+..+ ...+|+. ...+... .+....+|.+.|++|+|+|++ |++|+ |++|++||+.+++....+.........
T Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~- 108 (388)
T d1erja_ 32 LKKQTNDYYILYNP-ALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD- 108 (388)
T ss_dssp SEEECSSCEEEECT-TSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred cccCCCCcEEEeCC-CCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc-
Confidence 345566 8889997 4333221 111111299999999999997 66665 899999999988765554332111000
Q ss_pred eeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-
Q 038568 119 IRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 195 (357)
...........|...|.+++|+| ++|++|+.||.|++||...++.+..+ .+|...|.++.+++++
T Consensus 109 -----------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 176 (388)
T d1erja_ 109 -----------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGD 176 (388)
T ss_dssp ---------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred -----------ccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc-ccccccccccccccccc
Confidence 00001112237888999999999 89999999999999999999888888 7899999999999988
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee--
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE-- 273 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 273 (357)
.+++++.++.+++||.+ ..........+...+....+.+++++|++++.||.|++||.+++.......
T Consensus 177 ~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 246 (388)
T d1erja_ 177 KLVSGSGDRTVRIWDLR----------TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246 (388)
T ss_dssp EEEEEETTSEEEEEETT----------TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred cccccccceeeeeeecc----------ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc
Confidence 69999999999999987 333444444444444444444488999999999999999999876543332
Q ss_pred --eccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc---------eeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 274 --ALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC---------YRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 274 --~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
...+|...|.++.|+++ +|++++.||.|++||+++++. .........|...|++++|+|+++
T Consensus 247 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----- 321 (388)
T d1erja_ 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE----- 321 (388)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-----
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-----
Confidence 23468899999999876 999999999999999976532 233455667899999999999998
Q ss_pred eEEEEEcCCCCeEEecC
Q 038568 341 IVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.||.|++||
T Consensus 322 --~l~sg~~dg~i~vwd 336 (388)
T d1erja_ 322 --YILSGSKDRGVLFWD 336 (388)
T ss_dssp --EEEEEETTSEEEEEE
T ss_pred --EEEEEeCCCEEEEEE
Confidence 999999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-34 Score=235.89 Aligned_cols=289 Identities=10% Similarity=0.071 Sum_probs=202.2
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEe
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTA 88 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~ 88 (357)
|.++.+++ |++.|++|+|+ +++||+|+.| +|+|||+ +.......+.....|..+|.+++|+|+. |++|
T Consensus 2 ~~v~~~~~-----h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~-~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 2 QIVQIEQA-----PKDYISDIKIIPSKSLLLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp EEEECSSC-----CSSCEEEEEEEGGGTEEEEEETTSEEEEEEE-ETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred CeEEcCCC-----CCCCEEEEEEeCCCCEEEEEECCCeEEEEEc-cCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEc
Confidence 34555554 99999999999 9999999999 9999999 6554433333222399999999999863 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|+.|++|++........... .+........+.+ ..+++++.++.+++
T Consensus 76 ~~d~~v~~w~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (342)
T d1yfqa_ 76 TVQGEILKVDLIGSPSFQALTN-----------------------------NEANLGICRICKYGDDKLIAASWDGLIEV 126 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBS-----------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred ccccceeeeecccccccccccc-----------------------------cccccccccccccccccccccccccccce
Confidence 9999999999987765443322 2222222333333 89999999999999
Q ss_pred EEcCcchhhhhcc-----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 167 WNASNYKCLESVN-----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 167 wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
||++++....... ...........+.+.+ .+++++.|+.|++||++. ....... .....+...+.+.
T Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~~~-~~~~~~~~~~~~~ 199 (342)
T d1yfqa_ 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL------CEDDNGT-IEESGLKYQIRDV 199 (342)
T ss_dssp ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC------CTTCCCE-EEECSCSSCEEEE
T ss_pred eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEeccc------Cccccee-eeecccccceeee
Confidence 9987665443321 1112233445555555 699999999999999972 2222222 2222334445555
Q ss_pred EEe-cCCCEEEEEecCCeEEEEecccCCcee------------eeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 241 ALN-GDGSLLFSGGCDRWIVVWERERDHRMV------------FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 241 ~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
.+. +++..+++++.||.+.+|+........ ......+|...+.+++|+|+ +|++|+.||.|++||
T Consensus 200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence 554 477899999999999999986432111 11123456778899999886 999999999999999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++++ +.+..+..+ ..+..++|+|+++ +|++++.|+.+++|
T Consensus 280 ~~~~---~~l~~~~~~-~~~~~~~~s~~~~-------~l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 280 LQTR---KKIKNFAKF-NEDSVVKIACSDN-------ILCLATSDDTFKTN 319 (342)
T ss_dssp TTTT---EEEEECCCC-SSSEEEEEEECSS-------EEEEEEECTHHHHC
T ss_pred CCCC---cEEEEecCC-CCCEEEEEEeCCC-------EEEEEEcCCcEEEe
Confidence 9987 555555433 3455677888888 88888888877776
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-33 Score=234.60 Aligned_cols=247 Identities=20% Similarity=0.283 Sum_probs=189.5
Q ss_pred cceeccccCCCCce-EEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 62 VDTFSNDLSSSGSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 62 ~~~~~~~~~~~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
..++++ |...| +|++|+++.|++|+.||+|+|||+.+++....+. +
T Consensus 5 ~~tL~G---H~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~------------------------------~ 51 (355)
T d1nexb2 5 RTTLRG---HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS------------------------------G 51 (355)
T ss_dssp EEEEEC---CSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE------------------------------C
T ss_pred cEEECC---cCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE------------------------------C
Confidence 346777 98875 7888887779999999999999999886554433 8
Q ss_pred ccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccc
Q 038568 141 HWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 141 ~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 217 (357)
|.++|.+++|++ ++|++|+.|+.|++|+....+...... ..+........+.+++ .+++++.|+.|++||++.....
T Consensus 52 H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~ 131 (355)
T d1nexb2 52 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131 (355)
T ss_dssp CSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC----
T ss_pred CCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCcee
Confidence 999999999999 999999999999999998877665542 2223344555667777 5899999999999998643211
Q ss_pred ccc-----------------------------------------------------ccceeeeeEeeccccceeEEEEec
Q 038568 218 KER-----------------------------------------------------KSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 218 ~~~-----------------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
... ....+.+.....+...+.++.|+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 211 (355)
T d1nexb2 132 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 211 (355)
T ss_dssp -------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred ccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc
Confidence 000 011222334445667788999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
++.++++++.|+.|++||++++. ....+.+|...|.++++++++|++++.||.|++||+++.. ..+..|...
T Consensus 212 ~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~ 283 (355)
T d1nexb2 212 ERKRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFSYHHTN 283 (355)
T ss_dssp TTTEEEEEETTSCEEEEETTTCC---EEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC-----EEEEEECTT
T ss_pred cceeeecccccceEEeeeccccc---cccccccccccccccccccceeeeeecccccccccccccc-----eecccccCC
Confidence 99999999999999999999887 4556678999999999999999999999999999999762 234456666
Q ss_pred eEEEE-EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLV-AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~-~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.++. +++++. +|++| .||.|++||
T Consensus 284 ~~~~~~~~~~~~-------~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 284 LSAITTFYVSDN-------ILVSG-SENQFNIYN 309 (355)
T ss_dssp CCCCCEEEECSS-------EEEEE-ETTEEEEEE
T ss_pred ceEEEEEcCCCC-------EEEEE-eCCEEEEEE
Confidence 66664 566665 66655 599999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-33 Score=229.82 Aligned_cols=246 Identities=25% Similarity=0.420 Sum_probs=189.4
Q ss_pred EeccCCccccceeccccCCCCceE-EEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEe
Q 038568 53 FDLISDYSHVDTFSNDLSSSGSVK-SITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVR 131 (357)
Q Consensus 53 w~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (357)
|+. .+.++.+.+++ |.+.|. ++.|+++.|+||+.||+|+|||+.+++....+.
T Consensus 1 W~~-~~~~~~~~l~G---H~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~---------------------- 54 (342)
T d2ovrb2 1 WRR-GELKSPKVLKG---HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV---------------------- 54 (342)
T ss_dssp HHH-SCCCCCEEEEC---STTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC----------------------
T ss_pred CCC-CCCCcCEEECC---cCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe----------------------
Confidence 666 67788889998 999874 567776679999999999999999887544332
Q ss_pred cccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEE------------------------
Q 038568 132 RHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN------------------------ 187 (357)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~------------------------ 187 (357)
+|...|.+++|++++|++++.|+.+++|+.......... ..+...+.
T Consensus 55 --------~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 125 (342)
T d2ovrb2 55 --------GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125 (342)
T ss_dssp --------CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred --------CCCCCEEEEEeCCCccccceecccccccccccccceecc-cccceeEeeeecccccccccccceeEEEeecc
Confidence 889999999999999999999999999997654432222 11111111
Q ss_pred ---------------EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 188 ---------------AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 188 ---------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
.........+++++.|+.|++||.+ .......+.+|...+..+ .+++.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~----------~~~~~~~~~~~~~~~~~~--~~~~~~l~s~ 193 (342)
T d2ovrb2 126 TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE----------TETCLHTLQGHTNRVYSL--QFDGIHVVSG 193 (342)
T ss_dssp SCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG----------GTEEEEEECCCSSCEEEE--EECSSEEEEE
T ss_pred cccceeeeecccccceeeccccceeeeecCCCeEEEeecc----------cceeeEEEcCcccccccc--cCCCCEEEEE
Confidence 1111122357788888888888887 445666777777666554 4567899999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+.||.|++||++..+ ....+.+|...+.++++++++|++++.||.|++||+...+....+.....|...+.++.+++
T Consensus 194 ~~dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (342)
T d2ovrb2 194 SLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270 (342)
T ss_dssp ETTSCEEEEETTTCC---EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS
T ss_pred eCCCeEEEeecccce---eeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC
Confidence 999999999999877 45567789999999999999999999999999999998755555555556777787777765
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ ++++|+.||.|++||
T Consensus 271 ~---------~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 271 N---------FVITSSDDGTVKLWD 286 (342)
T ss_dssp S---------EEEEEETTSEEEEEE
T ss_pred C---------eeEEEcCCCEEEEEE
Confidence 4 899999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-33 Score=229.89 Aligned_cols=237 Identities=15% Similarity=0.156 Sum_probs=183.9
Q ss_pred C-ccceeEEEEe----cceEEEeeCC-ceEEEeccCCccccceecc-----ccCCCCceEEEEEecCc--eEEee--cCC
Q 038568 28 H-HMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTFSN-----DLSSSGSVKSITFHITK--IFTAH--QDC 92 (357)
Q Consensus 28 h-~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~~~--l~~~~--~d~ 92 (357)
| ...|++++|+ +.+||+|+.| +|+|||+ ..++....+.. ...|.++|.+++|++++ |++++ .++
T Consensus 61 h~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~ 139 (325)
T d1pgua1 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW-TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139 (325)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE-EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred CCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee-cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc
Confidence 6 5689999997 6799999999 9999999 65544433321 11388899999999987 55544 477
Q ss_pred eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEc
Q 038568 93 KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 93 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~ 169 (357)
.+++|+.++++....+. +|...|.+++|++ .++++++.|+.+++||.
T Consensus 140 ~~~~~~~~~~~~~~~~~------------------------------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~ 189 (325)
T d1pgua1 140 FGVFISWDSGNSLGEVS------------------------------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189 (325)
T ss_dssp SEEEEETTTCCEEEECC------------------------------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred eEEEEeecccccceeee------------------------------ecccccccccccccccceEEEeecccccccccc
Confidence 89999998876544332 7899999999999 35788999999999999
Q ss_pred Ccchhhhhcc--ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe--
Q 038568 170 SNYKCLESVN--KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN-- 243 (357)
Q Consensus 170 ~~~~~~~~~~--~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 243 (357)
...+....+. ..+...|.+++|+|++ .+++++.|+.|++||++ ..+.+..+.+|..++..+.|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~----------~~~~~~~l~~~~~~v~~~~~s~~ 259 (325)
T d1pgua1 190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----------SGEFLKYIEDDQEPVQGGIFALS 259 (325)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----------TCCEEEECCBTTBCCCSCEEEEE
T ss_pred cccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec----------cccccccccccccccccceeeee
Confidence 8766544432 4667889999999975 58899999999999987 455677788888888776666
Q ss_pred -cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecCc-eEEEecCCCeEEEeeC
Q 038568 244 -GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVGD-LLASGSADRTVRIWQR 306 (357)
Q Consensus 244 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~l~~~~~dg~i~vw~~ 306 (357)
|++++|++++.|+.|+|||+++++.+.... ...+... ..++.+.++ +|++++.||.|++||+
T Consensus 260 ~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ESSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ccCCCEEEEEeCCCeEEEEECCCCCEEEEEE-ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 689999999999999999999887543332 2233323 345566655 8999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-31 Score=221.24 Aligned_cols=244 Identities=18% Similarity=0.251 Sum_probs=202.8
Q ss_pred ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
.+..++|++ |.++|++|+|+|++ |++|+.||+|+|||+.+++....+.
T Consensus 45 ~~~~~tL~G---H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--------------------------- 94 (340)
T d1tbga_ 45 MRTRRTLRG---HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--------------------------- 94 (340)
T ss_dssp CCEEEEECC---CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE---------------------------
T ss_pred eeeeEEECC---CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe---------------------------
Confidence 355677888 99999999999987 9999999999999999886554443
Q ss_pred ccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh----hhccccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 137 LWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL----ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
.|...|.+++|+| .++++++.|+.+++|+....... ..+ ..|...........+..+.....+.....++
T Consensus 95 ---~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 95 ---LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170 (340)
T ss_dssp ---CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEE-CCCSSCEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred ---cccccEEeeEeeccceeeeeecccceeecccccccccccccceec-ccccccccccccccccccccccccccccccc
Confidence 7889999999999 89999999999999998764432 223 4566667777777777888899999999998
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
.. ..........+...+....+.+.+.++++++.|+.|++||+++++ ....+.+|...|.+++|+++
T Consensus 171 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~---~~~~~~~h~~~i~~v~~~p~ 237 (340)
T d1tbga_ 171 IE----------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---CRQTFTGHESDINAICFFPN 237 (340)
T ss_dssp TT----------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---EEEEECCCSSCEEEEEECTT
T ss_pred cc----------cccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc---EEEEEeCCCCCeEEEEECCC
Confidence 76 334455556677889999999999999999999999999999876 45567789999999999876
Q ss_pred --eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 --LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.||.|++|+++...... ......+...|++++|+|+++ +|++|+.||.|++||
T Consensus 238 ~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~-------~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 238 GNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGR-------LLLAGYDDFNCNVWD 298 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSSSC-------EEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCCCC-------EEEEEECCCEEEEEE
Confidence 99999999999999999873222 223456778899999999998 999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-32 Score=229.67 Aligned_cols=262 Identities=12% Similarity=0.139 Sum_probs=179.9
Q ss_pred CCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 70 SSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
+|...|.+++++++.+++++.|++|++||..+.+......... ....+ ..-..|......+.
T Consensus 12 ~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~----------------~~~~~--~~~~~~~~~~~~~~ 73 (393)
T d1sq9a_ 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSY----------------SHFVH--KSGLHHVDVLQAIE 73 (393)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEE----------------EEECC--TTCEEEEEEEEEEE
T ss_pred cccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeE----------------eeeec--cCCceEeeeEeeec
Confidence 3999999999999889999999999999987654211110000 00000 00001112222223
Q ss_pred Eec---CeEEEEecCCeEEEEEcCcchhhhhcc---------ccccccEEEEEEecCC------eEEEEeCCCeEEEEEc
Q 038568 150 VKQ---GLMYSVSWDRSFKIWNASNYKCLESVN---------KAHEDAVNAVVVSDNG------VVYTGSADGRIRVWER 211 (357)
Q Consensus 150 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~------~l~~~~~d~~i~i~d~ 211 (357)
... .++++++.||.|++|++........+. ..+...+..+++.++. ++++++.||.+++|++
T Consensus 74 ~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~ 153 (393)
T d1sq9a_ 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153 (393)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence 222 567899999999999987654433221 2344567778887653 4889999999999998
Q ss_pred cccccccccc-----c---ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee---eeccCCcc
Q 038568 212 SVVDHNKERK-----S---RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA---EALWGHTG 280 (357)
Q Consensus 212 ~~~~~~~~~~-----~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~ 280 (357)
.......... . ..........+...+.+++|+|++ +|++|+.||.|++||+++++..... ..+.+|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 6332211000 0 011122223455668999999997 8999999999999999987754333 34568999
Q ss_pred ceEEEeecCc--eEEEecCCC---eEEEeeCCCCcceeee----------eeecCCcCceEEEEEeeCCCCCCCCeEEEE
Q 038568 281 ALLCLINVGD--LLASGSADR---TVRIWQRGKENCYRCM----------AFLEGHEKPVKSLVAISSSSSASNGIVSIG 345 (357)
Q Consensus 281 ~v~~~~~~~~--~l~~~~~dg---~i~vw~~~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~ 345 (357)
+|.+++|+|+ +|++|+.|+ .|++||+++++....+ ..+.+|.+.|++++|+|+++ +|+
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-------~l~ 305 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-------TLC 305 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-------EEE
T ss_pred eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-------eeE
Confidence 9999999877 999999886 5999999987433322 22358999999999999998 999
Q ss_pred EcCCCCeEEecC
Q 038568 346 SGSLNGEIKVWD 357 (357)
Q Consensus 346 s~~~dg~v~~wd 357 (357)
|||.|++|++||
T Consensus 306 S~s~D~~v~vWd 317 (393)
T d1sq9a_ 306 SAGWDGKLRFWD 317 (393)
T ss_dssp EEETTSEEEEEE
T ss_pred EECCCCEEEEEE
Confidence 999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-31 Score=219.74 Aligned_cols=255 Identities=12% Similarity=0.039 Sum_probs=186.9
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.++..++ |.+.|++|+|+|++ |++|+.||+|+|||++.......+...
T Consensus 2 ~~v~~~~~---h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-------------------------- 52 (342)
T d1yfqa_ 2 QIVQIEQA---PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------------------------- 52 (342)
T ss_dssp EEEECSSC---CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE--------------------------
T ss_pred CeEEcCCC---CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe--------------------------
Confidence 34555666 99999999999987 999999999999999876544333221
Q ss_pred cccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccc
Q 038568 138 WLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 213 (357)
.+|..+|.+++|++ .+|++|+.||.|++|++............+........+.++. .+++++.++.+++||++
T Consensus 53 -~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~- 130 (342)
T d1yfqa_ 53 -LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR- 130 (342)
T ss_dssp -EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH-
T ss_pred -cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecc-
Confidence 17899999999988 4899999999999999988776666533333333444444444 79999999999999997
Q ss_pred cccccccccceeeeeEeecc--ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--
Q 038568 214 VDHNKERKSRHMLVTTLVKH--RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-- 289 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 289 (357)
..............+ ........+.+++..+++++.|+.|++||++.............+.....+..+.+
T Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 131 -----NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp -----HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred -----ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence 222222333333322 23345667788889999999999999999987765544444444555555554433
Q ss_pred -ceEEEecCCCeEEEeeCCCCcce------------eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 290 -DLLASGSADRTVRIWQRGKENCY------------RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 290 -~~l~~~~~dg~i~vw~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..+++++.||.+.+|+....... +.......|...|++++|+|+++ +|+||+.||.|++|
T Consensus 206 ~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~lasg~~Dg~v~vW 278 (342)
T d1yfqa_ 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------FLYTAGSDGIISCW 278 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------CEEEEETTSCEEEE
T ss_pred CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-------EEEEECCCCEEEEE
Confidence 38999999999999998653211 11112345777899999999998 99999999999999
Q ss_pred C
Q 038568 357 D 357 (357)
Q Consensus 357 d 357 (357)
|
T Consensus 279 D 279 (342)
T d1yfqa_ 279 N 279 (342)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-31 Score=213.20 Aligned_cols=246 Identities=24% Similarity=0.383 Sum_probs=201.0
Q ss_pred ccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEe
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTA 88 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 88 (357)
+..++++++++++ |.++|++++|++++|++|+.| .|++|++ ..+........ +.............++++
T Consensus 41 d~~~~~~~~~l~~-----H~~~V~~v~~~~~~l~s~s~D~~i~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 111 (293)
T d1p22a2 41 DKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSDSTVRVWDV-NTGEMLNTLIH---HCEAVLHLRFNNGMMVTC 111 (293)
T ss_dssp ESSSCCEEEEECC-----CSSCEEEEECCSSEEEEEETTSCEEEEES-SSCCEEEEECC---CCSCEEEEECCTTEEEEE
T ss_pred ECCCCcEEEEEec-----CCCCEeeeecccceeeccccccccccccc-ccccccccccc---cccccccccccccceeec
Confidence 3456788888886 999999999999999999999 9999999 77776666654 444444444444559999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN 168 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd 168 (357)
..++.+.+|+.............. .|...+..+.+.+..+++++.|+.|++||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~v~~~~~~~~~~~~~s~d~~i~~~d 164 (293)
T d1p22a2 112 SKDRSIAVWDMASPTDITLRRVLV---------------------------GHRAAVNVVDFDDKYIVSASGDRTIKVWN 164 (293)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEEC---------------------------CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ccccceeEeecccccccccccccc---------------------------ccccccccceecccccccccCCCceeeec
Confidence 999999999998776544443322 77888999999888999999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+++++.+..+ ..+...+..+.+++. .+++++.|+.|++||++ ....+.....+...+.. +.+++.+
T Consensus 165 ~~~~~~~~~~-~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~----------~~~~~~~~~~~~~~v~~--~~~~~~~ 230 (293)
T d1p22a2 165 TSTCEFVRTL-NGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIE----------CGACLRVLEGHEELVRC--IRFDNKR 230 (293)
T ss_dssp TTTCCEEEEE-ECCSSCEEEEEEETT-EEEEEETTSCEEEEETT----------TCCEEEEECCCSSCEEE--EECCSSE
T ss_pred CCCCcEEEEE-cccccccccccCCCC-eEEEecCCCEEEEEecc----------cceeeeeecccceeeee--ccccceE
Confidence 9999988888 778888888887643 79999999999999998 45566677777777765 4567889
Q ss_pred EEEEecCCeEEEEecccCCc------eeeeeeccCCccceEEEeecCceEEEecCCCeEEEee
Q 038568 249 LFSGGCDRWIVVWERERDHR------MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
|++|+.||.|++||+..... ......+.+|...|.+++|++.+|++|+.||+|++||
T Consensus 231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 99999999999999864322 2245667889999999999999999999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.1e-29 Score=201.70 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=180.1
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
|...|.+++++ +..+++++.| +|++|+. ...+ ....+..+++.+++ ++..+.++.+.+|+..+++.
T Consensus 45 h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
T d1pgua2 45 HSNLIVSLDNSKAQEYSSISWDDTLKVNGI-TKHE----------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113 (287)
T ss_dssp CCSCEEEEECCSTTCCEEEETTTEEEETTE-EEEE----------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCEEEEEecCCCeEEEEeeccccccccc-cccc----------cccceeeeeeccCCceEEEeecccceeeeccceee
Confidence 99999999999 8889999999 9999998 4421 34467788899887 66667778899999888765
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCC-eEEEEEcCcchhhhhcccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDR-SFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 183 (357)
...+. +...+.++......+++++.++ .+++|++...+....+...+.
T Consensus 114 ~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 162 (287)
T d1pgua2 114 IKSVR-------------------------------LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 162 (287)
T ss_dssp EEEEE-------------------------------CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred eeecc-------------------------------ccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccC
Confidence 54432 2344556666667777777664 799999987766665545678
Q ss_pred ccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC----------CCEEEEE
Q 038568 184 DAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD----------GSLLFSG 252 (357)
Q Consensus 184 ~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~ 252 (357)
..+++++|+|++ +|++|+.||.|++||+.. .......+..|..+|.+++|+|. +.+|++|
T Consensus 163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 163 AKPSYISISPSETYIAAGDVMGKILLYDLQS---------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred CceeEEEeccCccccccccccccccceeecc---------cccccccccccccccceeeecccccccccccCCCCeeEee
Confidence 899999999999 699999999999999871 12223346688999999999874 4689999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeC
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQR 306 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~ 306 (357)
+.|+.|++||++++.. ....+.+|...|.++.|+++ .|++++.|+.|++|++
T Consensus 234 s~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 234 SLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCe--EEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 9999999999987543 45667789999999999877 8999999999999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.9e-29 Score=209.47 Aligned_cols=256 Identities=11% Similarity=0.054 Sum_probs=191.2
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCC--eEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDC--KIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
|+++|+++.+.|++||. +++..++. . |...|.+++|+||+ |++++.+. .|++||+++++....
T Consensus 15 G~~~a~~~~g~v~v~d~-~~~~~~~~--~---~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~------- 81 (360)
T d1k32a3 15 GDLIAFVSRGQAFIQDV-SGTYVLKV--P---EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF------- 81 (360)
T ss_dssp GGCEEEEETTEEEEECT-TSSBEEEC--S---CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC-------
T ss_pred CCEEEEEECCeEEEEEC-CCCcEEEc--c---CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe-------
Confidence 89999988779999999 77665543 3 89999999999998 66665543 799999988754321
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
..|...+.+++|+| ++|++++.++.+++|++.+++....+ ..+...+.+++|+
T Consensus 82 ------------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s 136 (360)
T d1k32a3 82 ------------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTIS 136 (360)
T ss_dssp ------------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEEC
T ss_pred ------------------------eCCCceEEeeeecccccccceeccccccccccccccceeeee-ecccccccchhhc
Confidence 27889999999999 89999999999999999998887777 7788889999999
Q ss_pred cCCe-EEEE----------eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 193 DNGV-VYTG----------SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 193 ~~~~-l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
|++. |+.+ ..++.+++||+. ..+ ......+...+..++|+|+|++|++++.++.+.+|
T Consensus 137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~----------~~~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~ 205 (360)
T d1k32a3 137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----------GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 205 (360)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----------TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred cceeeeeeeccccccceeeccccceeeeccc----------cCc-eeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence 9994 5533 345578999987 222 23344567788899999999999999999999999
Q ss_pred ecccCCce-------eeee---------------------------------eccCCccceEEEeecC------------
Q 038568 262 ERERDHRM-------VFAE---------------------------------ALWGHTGALLCLINVG------------ 289 (357)
Q Consensus 262 d~~~~~~~-------~~~~---------------------------------~~~~~~~~v~~~~~~~------------ 289 (357)
|....... .... .+....+....+...+
T Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1k32a3 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285 (360)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence 86432110 0000 0000011111222111
Q ss_pred -c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 -D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 -~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. ++++++.++.|++||+.+++ + ..|.+.|.+++|+||++ +|++++.||.|++||
T Consensus 286 ~~~~~~~~~~~~~~i~~~d~~~~~----~---~~~~~~v~~~~~SpDG~-------~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 286 EFAAYYQGAPEKGVLLKYDVKTRK----V---TEVKNNLTDLRLSADRK-------TVMVRKDDGKIYTFP 342 (360)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCC----E---EEEEEEEEEEEECTTSC-------EEEEEETTSCEEEEE
T ss_pred CCeeEEEecCCCCEEEEEECCCCe----E---EEecCCcCEEEECCCCC-------EEEEEECCCeEEEEE
Confidence 1 45667788999999998863 1 22445699999999999 999999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=3.7e-25 Score=187.64 Aligned_cols=270 Identities=12% Similarity=0.087 Sum_probs=182.3
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
++++++.| .|+|||+ .+++.+.++.. + ..+..++|+||+ +++++.|+++++||+.+++........
T Consensus 34 ~~V~~~~dg~v~vwD~-~t~~~~~~l~~---g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~------ 102 (426)
T d1hzua2 34 FSVTLRDAGQIALVDG-DSKKIVKVIDT---G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------ 102 (426)
T ss_dssp EEEEETTTTEEEEEET-TTCSEEEEEEC---C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE------
T ss_pred EEEEEcCCCEEEEEEC-CCCcEEEEEeC---C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe------
Confidence 45677788 9999999 99999999985 5 468999999998 889999999999999988754322210
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCCeEEEEEcCcchhhhhccccccccE--------
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRSFKIWNASNYKCLESVNKAHEDAV-------- 186 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------- 186 (357)
...+|...+.+++|+| +++ +++..++.+++||..+++++..+ ..+...+
T Consensus 103 -------------------~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~ 162 (426)
T d1hzua2 103 -------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STRGMTVDTQTYHPE 162 (426)
T ss_dssp -------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECCEECSSSCCEESC
T ss_pred -------------------CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe-eccCCCccceeecCC
Confidence 0115666777788888 554 55568999999999998877665 4443333
Q ss_pred ---EEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEE
Q 038568 187 ---NAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVV 260 (357)
Q Consensus 187 ---~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v 260 (357)
..+..++++ . +.+....+.+.+++... ..........+...+..+.|+|++++++++.. +..+.+
T Consensus 163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~ 233 (426)
T d1hzua2 163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKD---------IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV 233 (426)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEECSS---------SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEE
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEecc---------ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceee
Confidence 344444444 1 22333334444444330 11112233456677889999999998777654 555777
Q ss_pred EecccCCce---------------------------------------------------eeeeeccCCccceEEEeecC
Q 038568 261 WERERDHRM---------------------------------------------------VFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 261 wd~~~~~~~---------------------------------------------------~~~~~~~~~~~~v~~~~~~~ 289 (357)
++..+.+.. .....+.+|...+..++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP 313 (426)
T d1hzua2 234 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 313 (426)
T ss_dssp EETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT
T ss_pred eecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC
Confidence 776533211 11223456777777788888
Q ss_pred c--eEE-------EecCCCeEEEeeCCCCcceeeee------eecCCcCceEEEEEeeCCCCCCCCeEEE-EE----cCC
Q 038568 290 D--LLA-------SGSADRTVRIWQRGKENCYRCMA------FLEGHEKPVKSLVAISSSSSASNGIVSI-GS----GSL 349 (357)
Q Consensus 290 ~--~l~-------~~~~dg~i~vw~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~~l-~s----~~~ 349 (357)
+ +|+ +++.|++|+|||+.+++....+. .+..|...|.+++|+||++ ++ ++ ++.
T Consensus 314 dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk-------~i~vs~~~~~~~ 386 (426)
T d1hzua2 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-------EVWFSVWNGKND 386 (426)
T ss_dssp TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS-------EEEEEECCCTTS
T ss_pred CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC-------EEEEEEecCCCC
Confidence 7 777 35668899999999875433221 2335667799999999998 55 44 357
Q ss_pred CCeEEecC
Q 038568 350 NGEIKVWD 357 (357)
Q Consensus 350 dg~v~~wd 357 (357)
||.|+|||
T Consensus 387 ~~~i~v~D 394 (426)
T d1hzua2 387 SSALVVVD 394 (426)
T ss_dssp CCEEEEEE
T ss_pred CCeEEEEE
Confidence 89999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=7.1e-23 Score=165.13 Aligned_cols=253 Identities=12% Similarity=0.132 Sum_probs=183.9
Q ss_pred eEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 41 LLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 41 ~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
|+. +++.| .|.+||+ ++++.++++. ....+..++|+|++ | ++++.++.|++||+.+++....+.
T Consensus 3 ~~yV~~~~~~~v~v~D~-~t~~~~~~i~----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~------ 71 (301)
T d1l0qa2 3 FAYIANSESDNISVIDV-TSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP------ 71 (301)
T ss_dssp EEEEEETTTTEEEEEET-TTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE------
T ss_pred EEEEEECCCCEEEEEEC-CCCeEEEEEE----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee------
Confidence 444 45567 9999999 9999999887 55668899999987 4 577789999999999887655443
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
.+ ..+..+.+++ ..++++..++.+.+|+..+++....+ .+.....++.++
T Consensus 72 ------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 124 (301)
T d1l0qa2 72 ------------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALS 124 (301)
T ss_dssp ------------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEEC
T ss_pred ------------------------cc-ccccccccccccccccccccccceeeecccccceeeeec--cccccceEEEee
Confidence 22 2457788888 35566677889999999998888776 455677889999
Q ss_pred cCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC-CeEEEEecccCCce
Q 038568 193 DNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-RWIVVWERERDHRM 269 (357)
Q Consensus 193 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~ 269 (357)
|++. ++++..++.+.+|+.. .......+. +...+..++++|+++.+++++.+ +.+.+|+....+..
T Consensus 125 ~dg~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (301)
T d1l0qa2 125 PDGKKLYVTNNGDKTVSVINTV----------TKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETT----------TTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCeeeeeeccccceeeeecc----------ccceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeee
Confidence 9993 5667778999999987 334444444 34557889999999988877765 56777777655432
Q ss_pred eeeeeccCCccceEEEeecCc--eEEEe---cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEE
Q 038568 270 VFAEALWGHTGALLCLINVGD--LLASG---SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSI 344 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~--~l~~~---~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l 344 (357)
.... .......+.++++ .++.+ ..++.|++||+.++ +.+..+..+ ..+.+++|+||++ +|
T Consensus 194 ---~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~~-~~~~~va~spdg~-------~l 258 (301)
T d1l0qa2 194 ---DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGK-------KV 258 (301)
T ss_dssp ---EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSS-------EE
T ss_pred ---eccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC---eEEEEEcCC-CCEEEEEEeCCCC-------EE
Confidence 2222 2233445555544 44333 34578999999987 445555543 4579999999998 55
Q ss_pred -EEcCCCCeEEecC
Q 038568 345 -GSGSLNGEIKVWD 357 (357)
Q Consensus 345 -~s~~~dg~v~~wd 357 (357)
++++.|+.|++||
T Consensus 259 ~va~~~~~~i~v~D 272 (301)
T d1l0qa2 259 YVALSFCNTVSVID 272 (301)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 7888999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=7.6e-25 Score=181.39 Aligned_cols=251 Identities=10% Similarity=0.098 Sum_probs=176.3
Q ss_pred CccceeEEEEe--cceEEEeeCC---ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN---EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d---~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|...|.+++|+ |++|++++.+ .|++||. ++++.. .+.. |...|.+++|+|++ |++++.++.+++|++.
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~-~~~~~~-~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~ 115 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAE-KFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 115 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET-TTCCEE-ECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC-CCCcEE-EeeC---CCceEEeeeecccccccceecccccccccccc
Confidence 89999999999 8888876633 7999999 775544 4555 99999999999997 9999999999999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe----------cCCeEEEEE
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS----------WDRSFKIWN 168 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~----------~dg~i~iwd 168 (357)
+++....+. .|...+.+++|+| ++|+.+. .++.+++||
T Consensus 116 ~~~~~~~~~------------------------------~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 116 TGKPTVIER------------------------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp TCCEEEEEE------------------------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred ccceeeeee------------------------------cccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence 877554433 6677888999999 6666443 355799999
Q ss_pred cCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccc------------------------
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSR------------------------ 223 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------ 223 (357)
+.+++..... .+...+..+.|+|+| +|++++.++.+.+||.............
T Consensus 166 ~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (360)
T d1k32a3 166 MEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243 (360)
T ss_dssp TTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred cccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCccc
Confidence 9887765554 567788899999999 5999999999999986532111000000
Q ss_pred ---------ee----------eeeEeeccccceeEEEEecCC---CEEEEEecCCeEEEEecccCCceeeeeeccCCccc
Q 038568 224 ---------HM----------LVTTLVKHRSTVNALALNGDG---SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA 281 (357)
Q Consensus 224 ---------~~----------~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 281 (357)
.. ....+..+...+..+.+.+.+ .++++++.++.|++||+.+++.. .|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~ 316 (360)
T d1k32a3 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-------EVKNN 316 (360)
T ss_dssp CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-------EEEEE
T ss_pred ccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-------EecCC
Confidence 00 000111122222223332222 24566777899999999876531 23456
Q ss_pred eEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 282 LLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 282 v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
+..++|+|+ +|++++.||.|++||+++++. ...+..+..|+
T Consensus 317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~---~~~~~~d~~~~ 359 (360)
T d1k32a3 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPED---ERTVETDKRPL 359 (360)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEESSCTTS---CEECCCCSSCE
T ss_pred cCEEEECCCCCEEEEEECCCeEEEEECCCCCc---ceEEEeccccc
Confidence 788888877 999999999999999998743 34444444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=4.4e-23 Score=169.00 Aligned_cols=262 Identities=7% Similarity=0.005 Sum_probs=178.7
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
+|+++++.| +|+|||+ ++++.+.++.... +...+.+++|+||+ + ++++.++.|.+||+.+++....+......
T Consensus 2 ~~~vt~~~d~~v~v~D~-~s~~~~~~i~~~~-~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDT-EKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE- 78 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTT-CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-
T ss_pred eEEEEEcCCCEEEEEEC-CCCeEEEEEECCC-CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc-
Confidence 689999999 9999999 8989988886411 34567899999997 4 57778999999999998876555432110
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe------------cCCeEEEEEcCcchhhhhcccc
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS------------WDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
.+...+..++|+| ++++++. .++.+.+||..+++.+..+ .
T Consensus 79 ------------------------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~ 132 (337)
T d1pbyb_ 79 ------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--E 132 (337)
T ss_dssp ------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--E
T ss_pred ------------------------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec--c
Confidence 2223344667777 5555554 4678999999998888777 3
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeecccc-----------------------ce
Q 038568 182 HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-----------------------TV 237 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~v 237 (357)
....+..++++|++. +++++. .+.+||.... .....+..+.. ..
T Consensus 133 ~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 133 APRQITMLAWARDGSKLYGLGR--DLHVMDPEAG----------TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp CCSSCCCEEECTTSSCEEEESS--SEEEEETTTT----------EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred ccCCceEEEEcCCCCEEEEEcC--CcceeeeecC----------cEEEEeecCCccccceecCCcceeeccccccceeee
Confidence 456688899999994 666654 4678988732 12222111110 01
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeee
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
.......+......+..++.+.+|+..++... ......+......+.+.++ +++.+ ++.|++||+.++ +.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~---~~~ 273 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---ASI 273 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---EEE
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEE--EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCC---cEE
Confidence 11111122223333445667899998877642 2233456666777777776 44433 689999999997 445
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+. +...+.+++|+||++ +|++++.||.|++||
T Consensus 274 ~~~~-~~~~~~~~~~s~dG~-------~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 274 KRVP-LPHSYYSVNVSTDGS-------TVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEE-CSSCCCEEEECTTSC-------EEEEESBSSEEEEEE
T ss_pred EEEc-CCCCEEEEEECCCCC-------EEEEEeCCCcEEEEE
Confidence 5443 456789999999999 999999999999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=8.3e-24 Score=178.94 Aligned_cols=299 Identities=9% Similarity=-0.022 Sum_probs=194.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+..++++++.+.. | ..+..++|+ |++|++++.| .|++||+ .+++. ...+.....|.+.+.+..|+||+
T Consensus 48 D~~t~~v~~~~~~-----g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~-~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG 120 (432)
T d1qksa2 48 DGSTYEIKTVLDT-----G-YAVHISRLSASGRYLFVIGRDGKVNMIDL-WMKEPTTVAEIKIGSEARSIETSKMEGWED 120 (432)
T ss_dssp ETTTCCEEEEEEC-----S-SCEEEEEECTTSCEEEEEETTSEEEEEET-TSSSCCEEEEEECCSEEEEEEECCSTTCTT
T ss_pred ECCCCcEEEEEeC-----C-CCeeEEEECCCCCEEEEEcCCCCEEEEEe-eCCCceEEEEEecCCCCCCeEEecccCCCC
Confidence 4567888888885 5 469999999 9999999999 9999999 66553 33333212255666667778887
Q ss_pred ---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEE
Q 038568 85 ---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSV 158 (357)
Q Consensus 85 ---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~ 158 (357)
+++++.++++++||..+++....+........ .....+......+.+++ .++++.
T Consensus 121 ~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD-------------------EQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT-------------------TCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CEEEEEcCCCCeEEEEeCccccceeeeccCCcccc-------------------ceeccCCCceeEEEECCCCCEEEEEE
Confidence 47888899999999998876655432111000 00014456677788888 345677
Q ss_pred ecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccc---------------
Q 038568 159 SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERK--------------- 221 (357)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~--------------- 221 (357)
..++.|.+||..+.+........+...+..++++|+++ ++ ++..++.+.++|...........
T Consensus 182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 261 (432)
T d1qksa2 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261 (432)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee
Confidence 78899999999887654433235667789999999994 44 44556788888876322110000
Q ss_pred -cc-ee----------eeeE-------eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc-
Q 038568 222 -SR-HM----------LVTT-------LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA- 281 (357)
Q Consensus 222 -~~-~~----------~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~- 281 (357)
.. .. .+.. ...|...+....++|++..+++++.++..++|+..+.. .|...
T Consensus 262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~---------~~~~~~ 332 (432)
T d1qksa2 262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN---------PEAEIS 332 (432)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC---------SSHHHH
T ss_pred cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC---------CCCCee
Confidence 00 00 0000 01122345556666666667777777777777654322 12111
Q ss_pred -eEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEE-EEc----CCCCeEEe
Q 038568 282 -LLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSI-GSG----SLNGEIKV 355 (357)
Q Consensus 282 -v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l-~s~----~~dg~v~~ 355 (357)
..++ ++++.+++++.|+.+++|++.++ . .+..|...|.+++|+||++ ++ ++. ..||.|+|
T Consensus 333 ~sv~v-pDg~~la~~s~d~~~k~w~~~~~---~---~l~~~~~~v~~~~fS~DG~-------~v~~S~~~~~~~~g~i~i 398 (432)
T d1qksa2 333 GSVAV-FDIKAMTGDGSDPEFKTLPIAEW---A---GITEGQPRVVQGEFNKDGT-------EVWFSVWNGKDQESALVV 398 (432)
T ss_dssp TCEEE-EEGGGCCCSSSCCCEEEECHHHH---H---TCCSSCCEEEEEEECTTSS-------EEEEEEECCTTSCCEEEE
T ss_pred eEEEE-EechhhcccccCCceEecccccc---c---ccCCCCCcEEEeEECCCCC-------EEEEEEecCCCCCCcEEE
Confidence 1222 67779999999999999998654 1 2335677899999999998 55 332 35789999
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
||
T Consensus 399 ~D 400 (432)
T d1qksa2 399 VD 400 (432)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3e-22 Score=169.31 Aligned_cols=270 Identities=12% Similarity=0.126 Sum_probs=176.8
Q ss_pred cce-EEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee--eeeecC
Q 038568 39 NSL-LYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ--LVSTLP 112 (357)
Q Consensus 39 ~~~-l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~--~~~~~~ 112 (357)
.++ +++.+.+ +|.|||. ++++.+..+.. + ..+..++|+||+ +++++.|+++++||+.+++... .+...
T Consensus 31 ~~~~~v~~~d~g~v~v~D~-~t~~v~~~~~~---g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~- 104 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDG-STYEIKTVLDT---G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 104 (432)
T ss_dssp GGEEEEEETTTTEEEEEET-TTCCEEEEEEC---S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CcEEEEEEcCCCEEEEEEC-CCCcEEEEEeC---C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-
Confidence 445 4778888 9999999 99999999985 5 469999999998 8899999999999998776432 22221
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce-EEEEecCCeEEEEEcCcchhhhhcc----------
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL-MYSVSWDRSFKIWNASNYKCLESVN---------- 179 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~~---------- 179 (357)
..|.+.+.+..|+| ++ +++++.++.|++||..+++.+..+.
T Consensus 105 --------------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~ 158 (432)
T d1qksa2 105 --------------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158 (432)
T ss_dssp --------------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred --------------------------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccccee
Confidence 15556666677777 55 4788889999999999988776542
Q ss_pred ccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC
Q 038568 180 KAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR 256 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 256 (357)
..+......+.++|++ . +++...++.|.+||... . ....+..+ .+...+..++|+|+|+++++++. ++
T Consensus 159 ~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~------~--~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~ 229 (432)
T d1qksa2 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD------L--NNLKTTEI-SAERFLHDGGLDGSHRYFITAANARN 229 (432)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC------S--SEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred ccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC------C--CcceEEEE-cccCccccceECCCCCEEEEeccccc
Confidence 1234556788899988 3 56777889999999761 1 11122222 34566789999999998777765 56
Q ss_pred eEEEEecccCCceeeeeecc--CCccceEEEeecCc--eEEEe-cCCCeEEEeeCCCCcc----eeeeeeec--------
Q 038568 257 WIVVWERERDHRMVFAEALW--GHTGALLCLINVGD--LLASG-SADRTVRIWQRGKENC----YRCMAFLE-------- 319 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--~l~~~-~~dg~i~vw~~~~~~~----~~~~~~~~-------- 319 (357)
.+.++|..+.+.......-. .|......+.+... ..++. ..++.|.+|+...... .+....+.
T Consensus 230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~ 309 (432)
T d1qksa2 230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF 309 (432)
T ss_dssp EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEE
Confidence 78999988765443332211 12222233333222 22222 2366777776543210 11111111
Q ss_pred -----------------CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 320 -----------------GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 320 -----------------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.....++++ ||++ .|++++.|+.+++||
T Consensus 310 ~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~-------~la~~s~d~~~k~w~ 356 (432)
T d1qksa2 310 IKTHPNSQYLYVDATLNPEAEISGSVAV-FDIK-------AMTGDGSDPEFKTLP 356 (432)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEE-EEGG-------GCCCSSSCCCEEEEC
T ss_pred EEecCCccceeecccCCCCCCeeeEEEE-Eech-------hhcccccCCceEecc
Confidence 11112233443 7776 889999999999996
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=1.2e-22 Score=166.98 Aligned_cols=269 Identities=7% Similarity=0.008 Sum_probs=178.1
Q ss_pred EEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeee
Q 038568 35 LAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 35 ~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
++|+ +++|++++.+ +|.+||+ .+++.++++.. ++...+.+++|+||+ ++++..++.|.+||+.+++....+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~-~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDV-ASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEET-TTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEEC-CCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 3566 8999999999 9999999 99999988864 256678899999997 466778999999999988766544
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe------------cCCeEEEEEcCcchh
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS------------WDRSFKIWNASNYKC 174 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~------------~dg~i~iwd~~~~~~ 174 (357)
....... .+...+..++|+| +++++++ .++.+.+||..+++.
T Consensus 79 ~~~~~~~------------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 79 NLSSVPG------------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp ESCCSTT------------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred ccccccc------------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 3321100 2223345566777 4454443 478899999998887
Q ss_pred hhhccc-cccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec---------
Q 038568 175 LESVNK-AHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG--------- 244 (357)
Q Consensus 175 ~~~~~~-~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------- 244 (357)
...+.. .....+..+.+++++++++.+ +.+.+|++... .....+..+ .....+.++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (346)
T d1jmxb_ 135 AKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTG----------KYTVALPLR-NWNRKGYSAPDVLYFWPHQ 201 (346)
T ss_dssp BCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTC----------CEEEEECST-TCCCTTBCCCBCCCCCCCC
T ss_pred eeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCC----------CEEEEEecC-CCccceEEeccccEEEEEe
Confidence 666521 123456667777787766554 45888887622 222222211 1112222222
Q ss_pred -----------------CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 245 -----------------DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 245 -----------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
....++++..++.+.+||+.++... ......+...+..+.++++ +++... ++.|++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d 278 (346)
T d1jmxb_ 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH--TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYD 278 (346)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEE
T ss_pred cCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE--EEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEE
Confidence 3334445556677888888876643 2333456666777777655 555544 46799999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..++ +.+..+. +...+.+++|+||++ +|++++.||.|++||
T Consensus 279 ~~~~---~~~~~~~-~~~~~~~va~s~DG~-------~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 279 LKQR---KLIKAAN-LDHTYYCVAFDKKGD-------KLYLGGTFNDLAVFN 319 (346)
T ss_dssp TTTT---EEEEEEE-CSSCCCEEEECSSSS-------CEEEESBSSEEEEEE
T ss_pred CCCC---cEEEEEc-CCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEE
Confidence 9987 4444443 345799999999999 999999999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.8e-21 Score=164.70 Aligned_cols=284 Identities=9% Similarity=-0.012 Sum_probs=184.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccc--eeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVD--TFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+..+++++.++.. | ..+..++|+ |++|++++.| .|++||+ .+++... .+.....|...+.+++|+||+
T Consensus 48 D~~t~~~~~~l~~-----g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~-~t~~~~~~~~i~~~~~~~~~~~s~~~spDG 120 (426)
T d1hzua2 48 DGDSKKIVKVIDT-----G-YAVHISRMSASGRYLLVIGRDARIDMIDL-WAKEPTKVAEIKIGIEARSVESSKFKGYED 120 (426)
T ss_dssp ETTTCSEEEEEEC-----C-SSEEEEEECTTSCEEEEEETTSEEEEEET-TSSSCEEEEEEECCSEEEEEEECCSTTCTT
T ss_pred ECCCCcEEEEEeC-----C-CCeeEEEECCCCCEEEEEeCCCCEEEEEc-cCCceeEEEEEeCCCCCcceEEeeeecCCC
Confidence 3457788888884 4 468999999 9999999999 9999999 7776433 333212266667777888887
Q ss_pred ---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce-EEEE
Q 038568 85 ---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL-MYSV 158 (357)
Q Consensus 85 ---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~ 158 (357)
++++..++.+++||..+++............. .....+......+.+++ .. +.+.
T Consensus 121 ~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~s~d~~~~~~~~ 181 (426)
T d1hzua2 121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD-------------------TQTYHPEPRVAAIIASHEHPEFIVNV 181 (426)
T ss_dssp TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS-------------------SCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CEEEEeecCCCeEEEEcCCccceeEEeeccCCCcc-------------------ceeecCCCceeEEEECCCCCEEEEec
Confidence 45666899999999998876554432110000 00002333445555555 33 3333
Q ss_pred ecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeEEEEEcccccccccc----------------
Q 038568 159 SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKER---------------- 220 (357)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~---------------- 220 (357)
...+.+.+++......+......+...+..+.++|++. +++...+..+.+++..........
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T d1hzua2 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261 (426)
T ss_dssp TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence 44566666666555433322246677788899998883 444455666777776533211000
Q ss_pred ----------------------------ccceeeeeEeeccccceeEEEEecCCCEEEE-------EecCCeEEEEeccc
Q 038568 221 ----------------------------KSRHMLVTTLVKHRSTVNALALNGDGSLLFS-------GGCDRWIVVWERER 265 (357)
Q Consensus 221 ----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~vwd~~~ 265 (357)
....+....+.+|...+..++|+|++++|++ +..|++|+|||+.+
T Consensus 262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 0112445567788889999999999999995 55688999999998
Q ss_pred CCceeeee------eccCCccceEEEeecCc--eE-EEe----cCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 266 DHRMVFAE------ALWGHTGALLCLINVGD--LL-ASG----SADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 266 ~~~~~~~~------~~~~~~~~v~~~~~~~~--~l-~~~----~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
++....+. .+..|...+..++|+|+ ++ +++ +.+|.|+|||.++. +....+.++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~---k~~~~i~~~~ 408 (426)
T d1hzua2 342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL---KLKAVVKDPR 408 (426)
T ss_dssp TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT---EEEEEECCTT
T ss_pred CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC---eEEEEECCCC
Confidence 77543321 23345667888888877 44 442 46899999999997 5555666553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=5.1e-20 Score=148.13 Aligned_cols=248 Identities=12% Similarity=0.138 Sum_probs=180.9
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+..+.+.+++++ ....+..++|+ |++|+ +++.+ .|++||+ .+++.+..+.. + ..+..++|++++
T Consensus 18 D~~t~~~~~~i~------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~-~t~~~~~~~~~---~-~~~~~~~~~~~~~ 86 (301)
T d1l0qa2 18 DVTSNKVTATIP------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPA---G-SSPQGVAVSPDGK 86 (301)
T ss_dssp ETTTTEEEEEEE------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEEC---S-SSEEEEEECTTSS
T ss_pred ECCCCeEEEEEE------CCCCceEEEEeCCCCEEEEEECCCCEEEEEEC-CCCceeeeeec---c-ccccccccccccc
Confidence 445677888887 44567899999 78775 55567 9999999 89899988875 4 457899999886
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEe
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVS 159 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~ 159 (357)
++++..++.+.+|+..+++....+ .+.....++.+++ . .++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 87 QVYVTNMASSTLSVIDTTSNTVAGTV-------------------------------KTGKSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-------------------------------ECSSSEEEEEECTTSSEEEEEET
T ss_pred cccccccccceeeecccccceeeeec-------------------------------cccccceEEEeecCCCeeeeeec
Confidence 667778889999999887655444 3345667888988 4 455667
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEe-CCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
.++.+.+|+..+.+.+..+ .....+..+.++|++ .++++. .++.+.+|+.. ......... ....+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~ 202 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTV--SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV----------TNSVIDTVK-VEAAP 202 (301)
T ss_dssp TTTEEEEEETTTTEEEEEE--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT----------TTEEEEEEE-CSSEE
T ss_pred cccceeeeeccccceeeec--ccCCCceEEEeeccccceeeeccccccccccccc----------ceeeeeccc-ccCCc
Confidence 7889999999998888776 445567889999988 455554 45677777765 223333333 34567
Q ss_pred eEEEEecCCCEEEEEec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE-EEecCCCeEEEeeCCCCcc
Q 038568 238 NALALNGDGSLLFSGGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL-ASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~~~~~dg~i~vw~~~~~~~ 311 (357)
..++++++++.++++.. ++.|++||+.+++... .+. +...+.+++++|+ +| ++++.|+.|++||++++
T Consensus 203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~---~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-- 276 (301)
T d1l0qa2 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA---RIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-- 276 (301)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE---EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--
T ss_pred ceeeccccccccccccccceeeeeeeeecCCCeEEE---EEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC--
Confidence 78999999998776644 4689999999887433 222 2345678888776 54 68888999999999998
Q ss_pred eeeeeeec
Q 038568 312 YRCMAFLE 319 (357)
Q Consensus 312 ~~~~~~~~ 319 (357)
+.+.++.
T Consensus 277 -~~~~~~~ 283 (301)
T d1l0qa2 277 -TITATMA 283 (301)
T ss_dssp -EEEEEEE
T ss_pred -eEEEEEe
Confidence 4444443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.3e-19 Score=143.83 Aligned_cols=274 Identities=11% Similarity=0.147 Sum_probs=172.9
Q ss_pred eEEEeeCC-ceEEEeccCCccc---cceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCc
Q 038568 41 LLYAASLN-EINVFDLISDYSH---VDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPT 113 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 113 (357)
.+++++.+ +|++|++ +.... ++.+. |.+.+..|+|+||+ | +++..|+.|++|++.............
T Consensus 6 v~v~~~~~~~I~v~~~-~~~~~l~~~~~~~----~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~- 79 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNL-NHEGALTLTQVVD----VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES- 79 (333)
T ss_dssp EEEEEGGGTEEEEEEE-CTTSCEEEEEEEE----CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-
T ss_pred EEEECCCCCcEEEEEE-cCCCCeEEEEEEc----CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-
Confidence 34666677 9999999 55433 33333 88999999999997 5 455568999999998665432222110
Q ss_pred cccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcchhhhhcc-ccccccEEEE
Q 038568 114 VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLESVN-KAHEDAVNAV 189 (357)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~ 189 (357)
.+...+..++|+| ++|++++. ++.+.+|+........... ..+...+.++
T Consensus 80 --------------------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 133 (333)
T d1ri6a_ 80 --------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 133 (333)
T ss_dssp --------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred --------------------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEE
Confidence 3344567899999 77777775 6789999877654333321 3455677889
Q ss_pred EEecCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccC
Q 038568 190 VVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERD 266 (357)
Q Consensus 190 ~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~ 266 (357)
.++|++. + .....+..+.+|+........ .................++|++++.+++... ..+...+|+....
T Consensus 134 ~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 134 NISPDNRTLWVPALKQDRICLFTVSDDGHLV----AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEE----EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred EeeecceeeeccccccceeeEEEeccCCcce----eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 9999993 4 444466789999976211100 0111111223345568899999998776554 5667788876543
Q ss_pred Ccee-eeeec------cCCccceEEEeecC--c-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 267 HRMV-FAEAL------WGHTGALLCLINVG--D-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 267 ~~~~-~~~~~------~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
.... ..... .........+.+++ + .++++..++.+.+|++........+.........+.+++|+||++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk- 288 (333)
T d1ri6a_ 210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK- 288 (333)
T ss_dssp TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS-
T ss_pred ccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC-
Confidence 2211 11111 11222334444444 4 566677789999999876543433443344556688999999998
Q ss_pred CCCCeEEEE-EcCCCCeEEecC
Q 038568 337 ASNGIVSIG-SGSLNGEIKVWD 357 (357)
Q Consensus 337 ~~~~~~~l~-s~~~dg~v~~wd 357 (357)
+|+ +++.++.|++|+
T Consensus 289 ------~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 289 ------YLIAAGQKSHHISVYE 304 (333)
T ss_dssp ------EEEEECTTTCEEEEEE
T ss_pred ------EEEEEECCCCeEEEEE
Confidence 654 556778999983
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=9.6e-17 Score=132.94 Aligned_cols=293 Identities=8% Similarity=-0.086 Sum_probs=183.1
Q ss_pred CccceeEEEEe--cceEEEee-----CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee--------
Q 038568 28 HHMIISCLAVH--NSLLYAAS-----LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH-------- 89 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~-----~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-------- 89 (357)
+..++.+++++ |+.+++.. .. .|.+||. .+++.+..+.. +..+ .++|+||+ |++++
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~-~tg~~~~~~~~---~~~~--~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNG---GFLP--NPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEEC-CCCCEEEEEeC---CCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence 88899999999 88776642 34 7999999 89999988875 4443 79999998 65553
Q ss_pred --cCCeEEEEecCCccceeeeeecCcccc------c-----------eeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 90 --QDCKIRVWKITASRQHQLVSTLPTVKD------R-----------LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 90 --~d~~i~vwd~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
.++.|.+||..+++....+........ . ......+.+...+..........+.....++.+
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHI 172 (373)
T ss_pred cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEE
Confidence 468899999999876555432211110 0 001111111111111111222344455667788
Q ss_pred ec---CeEEEEecCCeEEEEEcCcchhhhhcc-----ccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccccc
Q 038568 151 KQ---GLMYSVSWDRSFKIWNASNYKCLESVN-----KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 151 ~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
++ ..+++.+.|+.+.+||...++...... .........+.+.+++.++..+.++.+.+|+............
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 252 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEee
Confidence 88 567889999999999998877655441 1122233455566677777888899999999763211100000
Q ss_pred cee--eeeEeeccccceeEEEEecCCCE----------EEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 223 RHM--LVTTLVKHRSTVNALALNGDGSL----------LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 223 ~~~--~~~~~~~~~~~v~~~~~~~~~~~----------l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
... ..............+++++++.. ++....++.+.+||..+++....+ .+...+..+.|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~----~~~~~~~~~a~spD 328 (373)
T d2madh_ 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI----SLGHDVDAISVAQD 328 (373)
T ss_pred ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe----cCCCCeeEEEECCC
Confidence 000 00000001122334555555544 345566778999999988754332 24556777888765
Q ss_pred ----eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 291 ----LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 291 ----~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
++++++.|+.|++||+.++ +.+..+..+....+.|++.++
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg---~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAG---DQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCCC---CEEEEECCCCCCCcEEEEecC
Confidence 4578899999999999998 667888888777888877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=4.8e-17 Score=132.54 Aligned_cols=250 Identities=8% Similarity=0.020 Sum_probs=162.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccC--CCCceEEEEEecC
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLS--SSGSVKSITFHIT 83 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~ 83 (357)
+..+.++++++.. .. +...+.+++|+ |++++ +++.+ .|.+||+ .+++.+..+..... +...+..++|+|+
T Consensus 17 D~~s~~~~~~i~~-~~--~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~-~t~~~~~~~~~~~~~~~~~~~~~v~~s~d 92 (337)
T d1pbyb_ 17 DTEKMAVDKVITI-AD--AGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPD 92 (337)
T ss_dssp ETTTTEEEEEEEC-TT--CTTCCCCEEECTTSSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTT
T ss_pred ECCCCeEEEEEEC-CC--CCCCccEEEECCCCCEEEEEECCCCeEEEEEC-CCCcEEEEEecCCCcccccceeeEEEcCC
Confidence 3445677777753 11 44568899999 78775 55677 9999999 89888887765110 1233457899998
Q ss_pred c--eEEee------------cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 84 K--IFTAH------------QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 84 ~--l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
+ ++++. .+..+.+||..+++....+ .+...+..++
T Consensus 93 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------------------------~~~~~~~~~~ 141 (337)
T d1pbyb_ 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-------------------------------EAPRQITMLA 141 (337)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-------------------------------ECCSSCCCEE
T ss_pred CcEEEEeecCCcceeeeccccccceeeccccCCeEEEec-------------------------------cccCCceEEE
Confidence 7 55554 3567788888777554433 2334567789
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC------------------------C-eEEEEeC
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN------------------------G-VVYTGSA 202 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------~-~l~~~~~ 202 (357)
|++ +++++++. .+.+||..+++....+. .+. ......+.++ . ....+..
T Consensus 142 ~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T d1pbyb_ 142 WARDGSKLYGLGR--DLHVMDPEAGTLVEDKP-IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp ECTTSSCEEEESS--SEEEEETTTTEEEEEEC-STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EcCCCCEEEEEcC--CcceeeeecCcEEEEee-cCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence 999 67777754 47789998876555441 110 0000111111 1 1223334
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL 282 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 282 (357)
++.+.+||.. .. ......+..+...+..+.++|++.+++.+ ++.|++||+.+++....+. +...+
T Consensus 218 ~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~----~~~~~ 282 (337)
T d1pbyb_ 218 RTGLLTMDLE------TG---EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSY 282 (337)
T ss_dssp EEEEEEEETT------TC---CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCC
T ss_pred CccEEEEEcC------CC---cEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc----CCCCE
Confidence 5567788876 11 11223344567778889999999888766 5889999999887544332 34556
Q ss_pred EEEeecCc--eEEEecCCCeEEEeeCCCCccee
Q 038568 283 LCLINVGD--LLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 283 ~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
.+++|+++ +|++++.|+.|++||.++.+...
T Consensus 283 ~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 77887765 89999999999999999974333
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=6.2e-16 Score=125.76 Aligned_cols=252 Identities=13% Similarity=0.157 Sum_probs=161.2
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+.++.+. |.+.|..|+|+ |++|++++ .| .|++|++ ........+.....+...+..++|+|++ |+++
T Consensus 28 ~~~~~~~------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i-~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~ 100 (333)
T d1ri6a_ 28 TLTQVVD------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI-APDDGALTFAAESALPGSLTHISTDHQGQFVFVG 100 (333)
T ss_dssp EEEEEEE------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEE-CTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEE
T ss_pred EEEEEEc------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEE-eCCCCcEEEeeecccCCCceEEEEcCCCCEEeec
Confidence 5556666 88999999999 88886665 46 9999999 6544333333222255667889999997 6666
Q ss_pred e-cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeE
Q 038568 89 H-QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSF 164 (357)
Q Consensus 89 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i 164 (357)
+ .++.+.+|+............. .+...+.++.+++ ++++.++ .+..|
T Consensus 101 ~~~~~~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~v~~s~d~~~~~~~~~~~~~i 152 (333)
T d1ri6a_ 101 SYNAGNVSVTRLEDGLPVGVVDVV----------------------------EGLDGCHSANISPDNRTLWVPALKQDRI 152 (333)
T ss_dssp ETTTTEEEEEEEETTEEEEEEEEE----------------------------CCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred ccCCCceeeeccccccceeccccc----------------------------CCCccceEEEeeecceeeecccccccee
Confidence 5 5778999998766543333221 4455677888888 5555555 45679
Q ss_pred EEEEcCcchhhhhc-----cccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEee------
Q 038568 165 KIWNASNYKCLESV-----NKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV------ 231 (357)
Q Consensus 165 ~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------ 231 (357)
.+|+.......... ..........+++++++. +.+....+...+++..... ..........
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~ 226 (333)
T d1ri6a_ 153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH------GNIECVQTLDMMPENF 226 (333)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT------SCCEEEEEEECSCTTC
T ss_pred eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccc------cceeeeeeeeeeecCC
Confidence 99998764332211 123445667899999883 4555677788888875211 1111111111
Q ss_pred ccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE-ecCCCeEEEeeCC
Q 038568 232 KHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS-GSADRTVRIWQRG 307 (357)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~-~~~dg~i~vw~~~ 307 (357)
........+++++++++++.. ..++.+.+|++..................+..++|+|+ +|++ +..++.|++|++.
T Consensus 227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 223456778899999866654 55788999998866544333333334444556667655 6555 4567899999654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=9.9e-17 Score=131.87 Aligned_cols=273 Identities=8% Similarity=-0.059 Sum_probs=161.2
Q ss_pred cceEEEee-----CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe----------ecCCeEEEEecC
Q 038568 39 NSLLYAAS-----LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA----------HQDCKIRVWKIT 100 (357)
Q Consensus 39 ~~~l~t~~-----~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~----------~~d~~i~vwd~~ 100 (357)
++.+++.. .+ .|.+||. .+++.+.++.. +..+ .++|+||+ |+++ ..|+.|++||+.
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~-~tg~~~~~~~~---g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDG---GFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEEecccCCCcCeEEEEEC-CCCcEEEEEEC---CCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 66666542 45 7999999 89999988876 4444 79999997 5543 457899999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEE--ecCCeEEEEEcCcchhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV--SWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~--~~dg~i~iwd~~~~~~~~ 176 (357)
+++....+........ ........++|++ +.++.+ +.+..+.+|+..+++.+.
T Consensus 87 t~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRF-----------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 143 (355)
T ss_dssp TCCEEEEEEETTCCCC-----------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCccee-----------------------ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence 9876655543221000 1112234577888 555554 456789999999988777
Q ss_pred hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC
Q 038568 177 SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
.+ ..... ... ........++.+.|+...++......... ..........+...+....+.+++..++.++.++
T Consensus 144 ~~-~~~~~-~~~-~~~~~~~~~~~~~dg~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (355)
T d2bbkh_ 144 ML-DVPDC-YHI-FPTAPDTFFMHCRDGSLAKVAFGTEGTPE----ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216 (355)
T ss_dssp EE-ECCSE-EEE-EEEETTEEEEEETTSCEEEEECCSSSCCE----EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred EE-ecCCc-ceE-eecCCcceEEEcCCCCEEEEEecCCCeEE----EEecccccceecceeeeccccCCCCeEEEecCCC
Confidence 66 22211 111 11111223333444444444332100000 0000001112334456677888888999999999
Q ss_pred eEEEEecccCCceeeeeeccCCc------------cceEEEeecCceEEEecC----------CCeEEEeeCCCCcceee
Q 038568 257 WIVVWERERDHRMVFAEALWGHT------------GALLCLINVGDLLASGSA----------DRTVRIWQRGKENCYRC 314 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~ 314 (357)
.+++|++..+... .+.....+. .....+..++..++.... ...|.+||..+++ .
T Consensus 217 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~---~ 292 (355)
T d2bbkh_ 217 KIHQIDLSSGDAK-FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---R 292 (355)
T ss_dssp EEEEEECTTSSCE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---E
T ss_pred eEEEEecCCCcEE-EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc---E
Confidence 9999999876532 121111111 112333334444443332 2479999999873 4
Q ss_pred eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+..+. +...+.+++|+||++ ..++++++.|+.|++||
T Consensus 293 ~~~~~-~~~~~~~~a~spDG~-----~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 293 LAKFE-MGHEIDSINVSQDEK-----PLLYALSTGDKTLYIHD 329 (355)
T ss_dssp EEEEE-EEEEECEEEECCSSS-----CEEEEEETTTTEEEEEE
T ss_pred EEEec-CCCCEEEEEEcCCCC-----eEEEEEECCCCEEEEEE
Confidence 44443 345688999999985 12457788899999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=3.9e-16 Score=127.57 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=155.7
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEE-eeCC-ceEEEeccCCccccceeccccC---CCCceEEEEEec
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYA-ASLN-EINVFDLISDYSHVDTFSNDLS---SSGSVKSITFHI 82 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t-~~~d-~i~iw~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~ 82 (357)
+..+.+++++++. . |...+.+++|+ |+++++ ++.+ .|++||+ .+++.+..+..... +...+..++|+|
T Consensus 24 D~~t~~~~~t~~~--~--~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~-~t~~~~~~~~~~~~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 24 DVASDTVYKSCVM--P--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL-DTCKNTFHANLSSVPGEVGRSMYSFAISP 98 (346)
T ss_dssp ETTTTEEEEEEEC--S--SCCSSCEEEECTTSSEEEEEETTTTEEEEEET-TTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred ECCCCCEEEEEEc--C--CCCCcceEEECCCCCEEEEEECCCCcEEEEeC-ccCeeeeeecccccccccCCceEEEEEec
Confidence 4456788887763 1 56678899999 777654 4567 9999999 88888777654111 112456789999
Q ss_pred Cc--eEEee------------cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc------------
Q 038568 83 TK--IFTAH------------QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR------------ 136 (357)
Q Consensus 83 ~~--l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 136 (357)
|+ +++++ .++.+.+|+..+++....+...............+++.+........
T Consensus 99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (346)
T d1jmxb_ 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178 (346)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEE
T ss_pred CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEE
Confidence 87 54443 47789999988776544433322111111111122221111111100
Q ss_pred ------------------cccc--ccccEEEE----EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEE
Q 038568 137 ------------------LWLE--HWDAVSDL----VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV 190 (357)
Q Consensus 137 ------------------~~~~--~~~~v~~~----~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 190 (357)
.+.. ....+... .+.+ ..++++..++.+.+||..++.........+...+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (346)
T d1jmxb_ 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258 (346)
T ss_dssp ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred EecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence 0000 01111111 1111 34455566778899999887766555466778888899
Q ss_pred EecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCce
Q 038568 191 VSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 191 ~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
+++++. ++.. .++.|.+||.. ..+.+..+. +...+.+++|+|||++|++++.|+.|++||.++.+.+
T Consensus 259 ~~~~~~~~~~~-~~~~v~v~d~~----------~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 259 RSPKDPNQIYG-VLNRLAKYDLK----------QRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp ECSSCTTEEEE-EESEEEEEETT----------TTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EeCCCCEEEEe-cCCeEEEEECC----------CCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 988874 5444 45689999987 344444443 4557899999999999999999999999999998866
Q ss_pred eeeeeccCC
Q 038568 270 VFAEALWGH 278 (357)
Q Consensus 270 ~~~~~~~~~ 278 (357)
..+....++
T Consensus 327 ~~i~~p~g~ 335 (346)
T d1jmxb_ 327 KNIKLPGGD 335 (346)
T ss_dssp EEEECSSSC
T ss_pred EEEECCCCC
Confidence 555544444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=6.9e-15 Score=120.65 Aligned_cols=268 Identities=12% Similarity=0.048 Sum_probs=158.2
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccCC----CC
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLSS----SG 73 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~~----~~ 73 (357)
..+++.+.++.. + .+..++|+ |++|++++ .+ .|++||. .+++.+..+.....+ ..
T Consensus 35 ~~tg~~~~~~~~-----g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~-~t~~~~~~~~~~~~~~~~~~~ 106 (355)
T d2bbkh_ 35 GEAGRVIGMIDG-----G--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVGT 106 (355)
T ss_dssp TTTTEEEEEEEE-----C--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSC
T ss_pred CCCCcEEEEEEC-----C--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC-CCCCEEEEEecCCcceeecCC
Confidence 445666666654 3 33468898 88887653 36 8999999 888888776542212 12
Q ss_pred ceEEEEEecCc--eEEe--ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 74 SVKSITFHITK--IFTA--HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
....++|+|++ ++.+ +.+..+.+|+..+++....+.... ......
T Consensus 107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~ 155 (355)
T d2bbkh_ 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-------------------------------CYHIFP 155 (355)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------------------------EEEEEE
T ss_pred CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC-------------------------------cceEee
Confidence 33568899987 4444 456789999999887655443211 011111
Q ss_pred EecCeEEEEecCCeEEEEEcCcchhhhhc-----cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccc
Q 038568 150 VKQGLMYSVSWDRSFKIWNASNYKCLESV-----NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 150 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..+...++.+.|+....+..........+ ...+...+....+.+++ .++.++.++.+++|++.....
T Consensus 156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------- 228 (355)
T d2bbkh_ 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------- 228 (355)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-------
T ss_pred cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-------
Confidence 11133333444444444433222111111 01223334445566555 688889999999999873211
Q ss_pred eeeeeEeecc----------ccceeEEEEecCCCEEEEEecC----------CeEEEEecccCCceeeeeeccCCccceE
Q 038568 224 HMLVTTLVKH----------RSTVNALALNGDGSLLFSGGCD----------RWIVVWERERDHRMVFAEALWGHTGALL 283 (357)
Q Consensus 224 ~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~v~ 283 (357)
..+.....+ ......+++++++..++....+ ..|.+||..+++....+. +...+.
T Consensus 229 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~ 303 (355)
T d2bbkh_ 229 -KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEID 303 (355)
T ss_dssp -EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEEC
T ss_pred -EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----CCCCEE
Confidence 111111111 1223458899999988776543 369999999887543322 234466
Q ss_pred EEeecCc----eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 284 CLINVGD----LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 284 ~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+++++++ ++++++.|+.|++||++++ +.+..+.++......+.+.+
T Consensus 304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg---~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 304 SINVSQDEKPLLYALSTGDKTLYIHDAESG---EELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEETTTC---CEEEEECCCCSSCCEEECCC
T ss_pred EEEEcCCCCeEEEEEECCCCEEEEEECCCC---CEEEEEeCcCCCccEEEeCC
Confidence 7777765 4567788999999999998 55667766655545554433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.68 E-value=2.5e-14 Score=118.16 Aligned_cols=231 Identities=6% Similarity=-0.026 Sum_probs=143.0
Q ss_pred CCCceEEEEEecCc--eEEe-----ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTA-----HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
+.+++..++++|++ ++.. +.++.+.+||..+++....+. .+..
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~------------------------------~~~~ 68 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN------------------------------GGFL 68 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe------------------------------CCCC
Confidence 78899999999997 4433 234679999999887665443 2222
Q ss_pred cEEEEEEec--CeEEEEe----------cCCeEEEEEcCcchhhhhccccccccE-------EEEEEecCCe-E--EEEe
Q 038568 144 AVSDLVVKQ--GLMYSVS----------WDRSFKIWNASNYKCLESVNKAHEDAV-------NAVVVSDNGV-V--YTGS 201 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~-l--~~~~ 201 (357)
..++|+| +++++++ .++.|.+||..+++.+..+ ..+.... ..+.+++++. + ....
T Consensus 69 --~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 145 (373)
T d2madh_ 69 --PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFA 145 (373)
T ss_pred --ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence 2578888 6666654 4678999999999988776 3333332 3467777773 3 2334
Q ss_pred CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE-EEEEecCCeEEEEecccCCceeeeee------
Q 038568 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL-LFSGGCDRWIVVWERERDHRMVFAEA------ 274 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~------ 274 (357)
.++.+.+|+.. ..+. ..+.....++.++|+++. +++.+.|+.+.+|+............
T Consensus 146 ~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 211 (373)
T d2madh_ 146 AGPAVGLVVQG----------GSSD----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA 211 (373)
T ss_pred CCCceEEeecc----------CCeE----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence 45677788765 1111 122334567778887764 45677788888888754332111000
Q ss_pred ----------------------------------------ccCCccce----------EEEeec--C----------ceE
Q 038568 275 ----------------------------------------LWGHTGAL----------LCLINV--G----------DLL 292 (357)
Q Consensus 275 ----------------------------------------~~~~~~~v----------~~~~~~--~----------~~l 292 (357)
...+.... ..+.++ + ..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred ccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 00000000 001111 1 134
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++...++.+.+||..++ +.+..+. +...+.+++|+||++ ..++++++.|+.|++||
T Consensus 292 ~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~-----~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGG-----PDLYALSAGTEVLHIYD 347 (373)
T ss_pred EeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCC-----EEEEEEeCCCCeEEEEE
Confidence 45566778899999887 3344443 566789999999986 01347889999999997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=7.8e-13 Score=108.65 Aligned_cols=271 Identities=8% Similarity=0.080 Sum_probs=157.5
Q ss_pred EEEeeCC-ceEEEeccCCccccceecccc---------------------------CCCCceEEEEEecCc---eEEeec
Q 038568 42 LYAASLN-EINVFDLISDYSHVDTFSNDL---------------------------SSSGSVKSITFHITK---IFTAHQ 90 (357)
Q Consensus 42 l~t~~~d-~i~iw~~~~~~~~~~~~~~~~---------------------------~~~~~v~~l~~~~~~---l~~~~~ 90 (357)
+++++.+ .|++|++ .+++.++++.... .|........+.||+ +++...
T Consensus 14 f~Sgg~sG~V~V~dl-pS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEE-TTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeC-CCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 5566677 9999999 8877766653211 123334455556777 456668
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C--eEEEEecCC----
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G--LMYSVSWDR---- 162 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg---- 162 (357)
+++|.++|+.+.+..+.+.. .+......++|+| + +++..+.+.
T Consensus 93 ~~rVavIDl~t~k~~~ii~i-----------------------------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~ 143 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHI-----------------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQP 143 (441)
T ss_dssp TTEEEEEETTTTEEEEEEEC-----------------------------TTCCCEEEEEECCSSBCCEEEEEECSCEESS
T ss_pred CCEEEEEECCCCcEeeEEec-----------------------------CCCCCccceEEeccCCEEEEEeccCCccccc
Confidence 89999999998876555432 3345677778876 2 344333322
Q ss_pred -------------eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCC---------------eEEEEEccc
Q 038568 163 -------------SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADG---------------RIRVWERSV 213 (357)
Q Consensus 163 -------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~---------------~i~i~d~~~ 213 (357)
.+..+|..+.+...++ ........+.++|+|. +++.+.+. .|.+.+...
T Consensus 144 ~dg~~~~~~~~~~~~~~iD~~t~~v~~qI--~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~ 221 (441)
T d1qnia2 144 NDGTDFSLDNSYTMFTAIDAETMDVAWQV--IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER 221 (441)
T ss_dssp CSSSCCCGGGEEEEEEEEETTTCSEEEEE--EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred CcccccccccccceEEeecCccceeeEEE--ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence 2345777776666655 2334567788899884 44444331 122222110
Q ss_pred cc-------cccc---------cccceeeeeEeeccccceeEEEEecCCCEEEE-EecCCeEEEEecccCCce-----ee
Q 038568 214 VD-------HNKE---------RKSRHMLVTTLVKHRSTVNALALNGDGSLLFS-GGCDRWIVVWERERDHRM-----VF 271 (357)
Q Consensus 214 ~~-------~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~-----~~ 271 (357)
.. .... .......+..+.... ....+.++|||+++++ +..+++|.|||+.+.... ..
T Consensus 222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence 00 0000 001122233333333 3578999999998754 567999999998753321 00
Q ss_pred eeeccCC---ccceEEEeecCc--eEEEecCCCeEEEeeCCCC------c-ceeeeeee-----cCCcCceEEEEEeeCC
Q 038568 272 AEALWGH---TGALLCLINVGD--LLASGSADRTVRIWQRGKE------N-CYRCMAFL-----EGHEKPVKSLVAISSS 334 (357)
Q Consensus 272 ~~~~~~~---~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~------~-~~~~~~~~-----~~h~~~v~~~~~~~~~ 334 (357)
.....++ .-..+..+|+++ .+.+...|..|..|++... + ....+..+ .+|...+.+.+++||+
T Consensus 301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG 380 (441)
T d1qnia2 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG 380 (441)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred ceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence 0011111 111234467765 6778889999999997421 1 11122222 5788888888899999
Q ss_pred CCCCCCeEEEEEc---CCCCe
Q 038568 335 SSASNGIVSIGSG---SLNGE 352 (357)
Q Consensus 335 ~~~~~~~~~l~s~---~~dg~ 352 (357)
+ +|+++ |.|..
T Consensus 381 k-------~l~s~~k~s~dr~ 394 (441)
T d1qnia2 381 K-------WLVVLSKFSKDRF 394 (441)
T ss_dssp C-------EEEEEESCCGGGS
T ss_pred c-------EEEecCccccccC
Confidence 9 99999 55543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=1.2e-12 Score=107.69 Aligned_cols=261 Identities=8% Similarity=-0.057 Sum_probs=155.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe----------ecCCeEEEEecCCccceeeeeecCcccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA----------HQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.|.+||. .+++.+..+.. +..+ .++|+||+ |+++ ..|+.|.+||..+++....+.......
T Consensus 47 ~~~~~d~-~~~~~~~~~~~---~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~- 119 (368)
T d1mdah_ 47 ENWVSCA-GCGVTLGHSLG---AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR- 119 (368)
T ss_dssp EEEEEET-TTTEEEEEEEE---CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-
T ss_pred eEEEEeC-CCCcEEEEEeC---CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce-
Confidence 6888899 88898888876 5544 58899997 5543 347889999999887665553211000
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
.........++|+| ++++.+. .++.+.+||+.+++.+..+ ..+.... +...+
T Consensus 120 ----------------------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~-~~~~~~~--~~~~~ 174 (368)
T d1mdah_ 120 ----------------------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFH--IHPGA 174 (368)
T ss_dssp ----------------------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-ECSSCCC--CEEEE
T ss_pred ----------------------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe-eccCcce--EccCC
Confidence 01111223578888 6676665 5799999999998887776 3222221 11122
Q ss_pred CCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 194 NGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 194 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
...++..+.||.+.++++....... ..........+...+....+.+++..+.+ .++.+++++........ ..
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~-~~ 247 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAA----GIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATM-KA 247 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCC----EECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEE-EC
T ss_pred CceEEEEcCCCCEEEEEecCCceee----eeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEE-Ee
Confidence 3357777888998888876221110 00001112233444556677777655544 34556666665443221 11
Q ss_pred eccC------------CccceEEEeecCceEEEecC---------CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 274 ALWG------------HTGALLCLINVGDLLASGSA---------DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 274 ~~~~------------~~~~v~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.... .......+..+++.++.... ...|.+||..+++ .+..+. +...+.+++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~-~~~~~~~~a~sp 323 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPIS-NGHDSDAIIAAQ 323 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCE-EEEEECEEEECC
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeEEec-CCCceeEEEECC
Confidence 1111 11223444555553333221 2469999999883 444443 345789999999
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++. .+++++..|+.|++||
T Consensus 324 DG~~-----~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 324 DGAS-----DNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSSC-----EEEEEETTTTEEEEEE
T ss_pred CCCE-----EEEEEeCCCCeEEEEE
Confidence 9851 2457888899999997
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=8.4e-12 Score=102.58 Aligned_cols=272 Identities=10% Similarity=-0.052 Sum_probs=154.4
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccC----CCC
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLS----SSG 73 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~----~~~ 73 (357)
....+.+.++.. +..+ .++|+ |++|++++ .| .|.+||. .+++.+..+..... ...
T Consensus 53 ~~~~~~~~~~~~-----~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~-~t~~~~~~i~~p~~~~~~~g~ 124 (368)
T d1mdah_ 53 AGCGVTLGHSLG-----AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp TTTTEEEEEEEE-----CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSC
T ss_pred CCCCcEEEEEeC-----CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC-CCCcEeeeecCCccceecccC
Confidence 344555555553 3333 47777 88888754 36 8999999 88888877754110 112
Q ss_pred ceEEEEEecCc--eEEee-cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 74 SVKSITFHITK--IFTAH-QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
....++|+||+ |+.+. .++.+.+||+.+++....+... .... ....
T Consensus 125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~------------------------------~~~~-~~~~ 173 (368)
T d1mdah_ 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA------------------------------SCFH-IHPG 173 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS------------------------------SCCC-CEEE
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc------------------------------Ccce-EccC
Confidence 23468999997 65554 6799999999988765544321 1110 0111
Q ss_pred ecCeEEEEecCCeEEEEEcCcchhhhhc-----cccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccccccee
Q 038568 151 KQGLMYSVSWDRSFKIWNASNYKCLESV-----NKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 151 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.+..++..+.||.+.+++.......... ...+...+....+.+++..+. ...+.+.++++..............
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSS
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccc
Confidence 1266777888999999987654432211 022334445566677765333 2345566666552111000000000
Q ss_pred eeeEe--eccccceeEEEEecCCCEEEEEecC---------CeEEEEecccCCceeeeeeccCCccceEEEeecCc----
Q 038568 226 LVTTL--VKHRSTVNALALNGDGSLLFSGGCD---------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---- 290 (357)
Q Consensus 226 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 290 (357)
..... .........+++++++..++....+ ..|.+||..+++....+ . +...+..++++++
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---~-~~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI---S-NGHDSDAIIAAQDGASD 328 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC---E-EEEEECEEEECCSSSCE
T ss_pred cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe---c-CCCceeEEEECCCCCEE
Confidence 00000 0011123457889988877665432 35999999988754322 2 3345666777655
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
+++++..|+.|++||..++ +.+..+..... -+.|++
T Consensus 329 ly~s~~~~~~v~v~D~~tg---k~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDAASD---QDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEEEETTTTEEEEEESSSC---EEEEECCCCSC-CCEEEC
T ss_pred EEEEeCCCCeEEEEECCCC---CEEEEEECCCC-CCEEEE
Confidence 4567788999999999998 55555554333 344443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=1.4e-10 Score=98.48 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=59.4
Q ss_pred CccceeEEEEe--cceEEEeeC---------C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASL---------N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~---------d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~ 93 (357)
|...|.++.|| |++|+.++. + .+.|||+ .+++ +..+.. +...+..+.|+||+ ++. ..++.
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~-~~~~-~~~l~~---~~~~~~~~~~SPDG~~ia~-~~~~~ 133 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL-NKRQ-LITEER---IPNNTQWVTWSPVGHKLAY-VWNND 133 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET-TTTE-ECCSSC---CCTTEEEEEECSSTTCEEE-EETTE
T ss_pred ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC-CCCc-cccccc---CCccccccccccCcceeeE-eeccc
Confidence 78899999999 999998854 4 6789999 7765 445665 88999999999998 555 56789
Q ss_pred EEEEecCCccceee
Q 038568 94 IRVWKITASRQHQL 107 (357)
Q Consensus 94 i~vwd~~~~~~~~~ 107 (357)
+.+|+..+++..+.
T Consensus 134 l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 134 IYVKIEPNLPSYRI 147 (470)
T ss_dssp EEEESSTTSCCEEC
T ss_pred ceEEECCCCceeee
Confidence 99999988865443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.32 E-value=4.6e-11 Score=98.06 Aligned_cols=252 Identities=9% Similarity=-0.026 Sum_probs=139.5
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeE-EEEecC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~d 161 (357)
+++++.+|+|++|++.+.+.+..+..+................+.........-..|..........| ++| ++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 88999999999999999987777655432211110000000000000000011123444455554555 555 455678
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeE------------------EEEEccccccccccc
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRI------------------RVWERSVVDHNKERK 221 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i------------------~i~d~~~~~~~~~~~ 221 (357)
++|.++|+.+++....+...+...+..++++|+++ .+++..+..+ ..+|..
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~--------- 164 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE--------- 164 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT---------
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc---------
Confidence 89999999999887766445678899999999983 3443333333 234433
Q ss_pred cceeeeeEeeccccceeEEEEecCCCEEEEEecCC-----------------------------------------eEEE
Q 038568 222 SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR-----------------------------------------WIVV 260 (357)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~v 260 (357)
..+....... ......++|+|+|+++++.+.+. .+.+
T Consensus 165 -t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vv 242 (441)
T d1qnia2 165 -TMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV 242 (441)
T ss_dssp -TCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred -cceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEE
Confidence 1222222222 23567899999999988877542 1222
Q ss_pred EecccCCceeeeeeccCCccce-EEEeecCc-eEEEecCCCeEEEeeCCCCcc--------eeeeeeecCCcCceEEEEE
Q 038568 261 WERERDHRMVFAEALWGHTGAL-LCLINVGD-LLASGSADRTVRIWQRGKENC--------YRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~h~~~v~~~~~ 330 (357)
++...... ...+.....+- ..++.+++ .++++..+++|.+||+++.+. ...+.......-.....+|
T Consensus 243 d~~~~~~v---~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 243 DGRGESEF---TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp ECSSSCSS---EEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EcccCCce---EEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence 22222111 11111122211 23344455 456788899999999875311 0111110111112344578
Q ss_pred eeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++. .+.|...|.+|..|+
T Consensus 320 d~~g~-------~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 320 DGRGN-------AYTTLFIDSQVCKWN 339 (441)
T ss_dssp CSSSE-------EEEEETTTTEEEEEE
T ss_pred cCCce-------EEEcccccceEEEec
Confidence 88876 888999999999996
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.17 E-value=1.3e-07 Score=76.76 Aligned_cols=162 Identities=7% Similarity=0.042 Sum_probs=92.5
Q ss_pred cccEEEEEEecCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEe--eccccceeEEEEecCCCEEEEEe-cCCe
Q 038568 183 EDAVNAVVVSDNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTL--VKHRSTVNALALNGDGSLLFSGG-CDRW 257 (357)
Q Consensus 183 ~~~v~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 257 (357)
...+.++.|+|+|+ ++++. ....|.+|+.... . ........ .........++|+|+++++++.. .+++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~------g-~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~ 216 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS------G-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR 216 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------S-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCC------C-ceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE
Confidence 34578999999994 55443 4567888876511 0 11111111 12345678999999999886655 5889
Q ss_pred EEEEecccCCceeee--eec--------------cCCccceEEEeecC--ceEEEecC------CCeEEEeeCCCCccee
Q 038568 258 IVVWERERDHRMVFA--EAL--------------WGHTGALLCLINVG--DLLASGSA------DRTVRIWQRGKENCYR 313 (357)
Q Consensus 258 i~vwd~~~~~~~~~~--~~~--------------~~~~~~v~~~~~~~--~~l~~~~~------dg~i~vw~~~~~~~~~ 313 (357)
|.+|++......... ... ..+......+.+++ ++|+++.. .+.|..|++.......
T Consensus 217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~ 296 (365)
T d1jofa_ 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee
Confidence 999998765432111 110 01112233444544 56665532 2347777776532222
Q ss_pred e---eeeecCCcCceEEEEEee-CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 C---MAFLEGHEKPVKSLVAIS-SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ~---~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. +...........+++++| +++ .++++...++.|.+|+
T Consensus 297 ~~~~~~~~~~~G~~p~~i~~~p~~G~------~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 297 KQLFLSPTPTSGGHSNAVSPCPWSDE------WMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTCTT------EEEEECSSSCEEEEEE
T ss_pred eEeEeeEEEcCCCCccEEEecCCCCC------EEEEEeCCCCeEEEEE
Confidence 1 111122334567899998 666 3445666889999984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=3.6e-08 Score=76.16 Aligned_cols=230 Identities=10% Similarity=0.048 Sum_probs=131.8
Q ss_pred CCceEEEEEecCc--eE-EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 72 SGSVKSITFHITK--IF-TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.-....|++.+++ ++ ..+..+.+..++....... .... .-......+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~----------------------------~~~~~p~gv 62 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPF----------------------------NGLYQPQGL 62 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCC----------------------------CSCCSCCCE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--Eecc----------------------------CCccCceEE
Confidence 3456789999887 33 3345566776665543211 1111 111234567
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEcccccccccccccee
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
++.+ .++++....+.+++++-.+...+... ........+++.+++. +++-..+..+..++... ...
T Consensus 63 av~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~---------~~~ 131 (260)
T d1rwia_ 63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---------KTQ 131 (260)
T ss_dssp EECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC---------SSC
T ss_pred EEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeecccccccccceeEeecccccccccccccc---------cee
Confidence 7777 44444444555555554444433332 3335678899999885 44445556677666541 111
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
..... ........++++++++++++...++.|..++.+...... .....-.....++++++ ++++....+.|..
T Consensus 132 ~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~---~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 132 TVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 207 (260)
T ss_dssp EECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred eeeee-cccCCcceeeecCCCCEeeeccccccccccccccceeee---eeccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence 11111 122345789999999988888888999999987654321 11122334456666554 6677777888888
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++..... ..+. ....-....+|++++++. ++++-..+++|+..
T Consensus 208 ~~~~~~~--~~~~-~~~~~~~P~~i~~d~~g~-------l~vad~~~~rI~~i 250 (260)
T d1rwia_ 208 LLAGSTT--STVL-PFTGLNTPLAVAVDSDRT-------VYVADRGNDRVVKL 250 (260)
T ss_dssp ECTTCSC--CEEC-CCCSCCCEEEEEECTTCC-------EEEEEGGGTEEEEE
T ss_pred EeCCCCe--EEEE-ccCCCCCeEEEEEeCCCC-------EEEEECCCCEEEEE
Confidence 8776541 1111 112234568999999987 77776667777654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=2.6e-08 Score=84.19 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=95.1
Q ss_pred EEEEe--cceEEEeeCC-ceEEEeccCCccccceeccc--cCCCCceEEEEEecCc--eEEee---------cCCeEEEE
Q 038568 34 CLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSND--LSSSGSVKSITFHITK--IFTAH---------QDCKIRVW 97 (357)
Q Consensus 34 ~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~--l~~~~---------~d~~i~vw 97 (357)
.+.|. ++++.. .| .+.+||+ .+++....+... ..|...|.++.|+||+ |+.++ .++.+.+|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEET-TTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEEC-CCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 45666 555543 35 8999999 887765444321 1266789999999998 66664 35678899
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
|+.+++... + ..+...+....|+| +.+|. ..++.+.+|+..+++..
T Consensus 98 d~~~~~~~~-l------------------------------~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~ 145 (470)
T d2bgra1 98 DLNKRQLIT-E------------------------------ERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSY 145 (470)
T ss_dssp ETTTTEECC-S------------------------------SCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCE
T ss_pred ECCCCcccc-c------------------------------ccCCccccccccccCcceeeE-eecccceEEECCCCcee
Confidence 998875322 1 16678899999999 66666 45789999999887755
Q ss_pred hhcccc-----------------ccccEEEEEEecCC-eEEEEeCC-CeEEEEEc
Q 038568 176 ESVNKA-----------------HEDAVNAVVVSDNG-VVYTGSAD-GRIRVWER 211 (357)
Q Consensus 176 ~~~~~~-----------------~~~~v~~~~~~~~~-~l~~~~~d-~~i~i~d~ 211 (357)
...... .......+.|+||| +|+....| ..+..|++
T Consensus 146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 433111 11234567899999 46666544 33554444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.12 E-value=1.4e-07 Score=74.79 Aligned_cols=236 Identities=7% Similarity=0.049 Sum_probs=135.7
Q ss_pred ceEEEEEecCc-eEEeec--------CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccccc
Q 038568 74 SVKSITFHITK-IFTAHQ--------DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA 144 (357)
Q Consensus 74 ~v~~l~~~~~~-l~~~~~--------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
....++|.+++ |+..+. +++|..||..++.......... ......
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~--------------------------~~~~g~ 72 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV--------------------------NGYGGI 72 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE--------------------------TTEECC
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc--------------------------ccCCCc
Confidence 45567899987 544432 4568888887665322111100 011223
Q ss_pred EEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccccc---ccEEEEEEecCCeEEEEeCC----------------
Q 038568 145 VSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHE---DAVNAVVVSDNGVVYTGSAD---------------- 203 (357)
Q Consensus 145 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~d---------------- 203 (357)
-..+.|.+ +.++++...+.|...|............... ...+.+++.++|.|..+...
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 56788988 5777787777888888765432221101111 23577899999865444322
Q ss_pred CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-----EEEEEecCCeEEEEecccCCceeeee---ec
Q 038568 204 GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-----LLFSGGCDRWIVVWERERDHRMVFAE---AL 275 (357)
Q Consensus 204 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~vwd~~~~~~~~~~~---~~ 275 (357)
|.|..++.. .+.. .+...-...+.++|+|++. ++++-+..+.|..||+.....+.... .+
T Consensus 153 G~v~~~~~d-----------g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 153 GSIYCFTTD-----------GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp EEEEEECTT-----------SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceEEEEeec-----------Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence 233333322 1111 1112223347899999764 44555678899999987554332211 11
Q ss_pred cC-CccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 276 WG-HTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 276 ~~-~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
.+ .....-.++++ +++.++....+.|.+||.+.+ +.+..+.......++++|.|+++ .+++|.+.+|.
T Consensus 221 ~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g---~~~~~i~~p~~~~t~~afg~d~~------~lyVt~~~~g~ 291 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTK------TIFVTEHENNA 291 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTTSS------EEEEEETTTTE
T ss_pred cccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC---EEEEEEECCCCCEEEEEEeCCCC------EEEEEECCCCc
Confidence 11 12223345554 456666667889999998876 33444445556789999999875 36677778888
Q ss_pred EEec
Q 038568 353 IKVW 356 (357)
Q Consensus 353 v~~w 356 (357)
|...
T Consensus 292 i~~~ 295 (314)
T d1pjxa_ 292 VWKF 295 (314)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=1.1e-07 Score=75.05 Aligned_cols=229 Identities=11% Similarity=0.033 Sum_probs=141.9
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+..+.+.+..+. -...+..++++ |+++++...+ +|..|+. +. + ...+.. ....+.+++|.+++
T Consensus 14 ~~~~~~v~~~~p------~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p-~g-~-~~~~~~---~~~~~~gla~~~dG~l 81 (302)
T d2p4oa1 14 ELAPAKIITSFP------VNTFLENLASAPDGTIFVTNHEVGEIVSITP-DG-N-QQIHAT---VEGKVSGLAFTSNGDL 81 (302)
T ss_dssp CCCCEEEEEEEC------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C-EEEEEE---CSSEEEEEEECTTSCE
T ss_pred cCCcccEEEECC------CCCCcCCEEECCCCCEEEEeCCCCEEEEEeC-CC-C-EEEEEc---CCCCcceEEEcCCCCe
Confidence 344455556664 23368899999 8888888878 9988887 43 3 333443 67889999999987
Q ss_pred eEEeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 IFTAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++...++.+..|+....... ..+... ........+++.+ +++++.+.+
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~n~i~~~~~g~~~v~~~~~ 133 (302)
T d2p4oa1 82 VATGWNADSIPVVSLVKSDGTVETLLTL----------------------------PDAIFLNGITPLSDTQYLTADSYR 133 (302)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEEC----------------------------TTCSCEEEEEESSSSEEEEEETTT
T ss_pred EEEecCCceEEEEEecccccceeecccc----------------------------CCccccceeEEccCCCEEeecccc
Confidence 566667777888876543321 111111 2234567888888 556666677
Q ss_pred CeEEEEEcCcchhhhh---------ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 162 RSFKIWNASNYKCLES---------VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+.+..+|...+..... ...........+.+..+..+++.+..+.|..++...... .. ..... .
T Consensus 134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~------~~-~~~~~-~ 205 (302)
T d2p4oa1 134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK------PG-EPEIF-V 205 (302)
T ss_dssp TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSC------BC-CCEEE-E
T ss_pred ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccc------cc-ccccc-c
Confidence 7888887765431111 001222345677776655677888889999888762111 11 11111 1
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
.......++++++|+++++...+++|..++..... . .+......-....+++|.
T Consensus 206 ~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-~-~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 206 EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-T-IIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-E-EEECGGGTCTTEEEEEEC
T ss_pred CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE-E-EEEecCCCCCCceEEEEc
Confidence 23346789999999988888889999999876332 1 222222233446777773
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.03 E-value=9.6e-07 Score=68.68 Aligned_cols=232 Identities=11% Similarity=0.145 Sum_probs=137.2
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
....|++.+++ +++-..+..|++||.+ ++....+....... +....-..+++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~------------------------~~~~~p~~~~~~ 78 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD------------------------SQLLYPNRVAVV 78 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSST------------------------TCBSSEEEEEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCc------------------------cccccccccccc
Confidence 46789999876 4444567889999965 43333322111000 111122334443
Q ss_pred c---CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceee
Q 038568 152 Q---GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 152 ~---~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+ ..++ ..+.++.|..++. .++....+..........+++.+++. +++....+.+.+++.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-----------g~~ 146 (279)
T d1q7fa_ 79 RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-----------GNV 146 (279)
T ss_dssp TTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-----------SCE
T ss_pred ccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-----------Cce
Confidence 3 2233 3344567777775 45555444334455677899998885 5555566778887754 223
Q ss_pred eeEe--eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEec-CCCeE
Q 038568 227 VTTL--VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTV 301 (357)
Q Consensus 227 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i 301 (357)
+..+ ..+......+++.++++.+++....+.|++||... +.+..+. ..+.......++++++ ++++-. .++.|
T Consensus 147 ~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v 224 (279)
T d1q7fa_ 147 LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNL 224 (279)
T ss_dssp EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred eecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceeeeec-ccccccCCcccccccCCeEEEEECCCCcEE
Confidence 3332 23456678899999999888888899999999764 3222221 1233334556666554 554433 45679
Q ss_pred EEeeCCCCcceeeeeeec--CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 302 RIWQRGKENCYRCMAFLE--GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 302 ~vw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+|+.. + +.+..+. ........|++.|++. ++++ +.++.|++|
T Consensus 225 ~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~dG~-------l~V~-~~n~~v~~f 269 (279)
T d1q7fa_ 225 TIFTQD-G---QLISALESKVKHAQCFDVALMDDGS-------VVLA-SKDYRLYIY 269 (279)
T ss_dssp EEECTT-S---CEEEEEEESSCCSCEEEEEEETTTE-------EEEE-ETTTEEEEE
T ss_pred EEECCC-C---CEEEEEeCCCCCCCEeEEEEeCCCc-------EEEE-eCCCeEEEE
Confidence 999854 4 3333332 2234578999999985 5554 568899987
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.02 E-value=2.6e-07 Score=72.90 Aligned_cols=228 Identities=11% Similarity=-0.013 Sum_probs=132.0
Q ss_pred CCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 72 SGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...+..+++.||+ +++...+++|..|+..... ..+. .....+.+++
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~------------------------------~~~~~~~gla 74 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA------------------------------TVEGKVSGLA 74 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE------------------------------ECSSEEEEEE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEE------------------------------cCCCCcceEE
Confidence 3468899999998 6677778888888865432 2221 3446788999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhh-hc-cccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccce
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLE-SV-NKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
|.+ +++++...++.+..++........ .+ ........+.+.+.+++. +++.+.++.+..+|..............
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence 999 777777788888888865432211 11 123445678999999996 5555677888888766211000000000
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee--cCceEEEecCCCeEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN--VGDLLASGSADRTVR 302 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 302 (357)
...............+.++. +.++++.+..+.|+.++.............. .......+++ +++++++...++.|.
T Consensus 155 ~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~ 232 (302)
T d2p4oa1 155 LARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVV 232 (302)
T ss_dssp GSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred cceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEE
Confidence 00000011122345666654 3456666778889999887654322222111 1122233444 455777777788899
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEe---eCCC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAI---SSSS 335 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~ 335 (357)
.++.... ...+......-...++++|. +|++
T Consensus 233 ~i~p~G~--~~~~~~~~~~~~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 233 RIAPDRS--TTIIAQAEQGVIGSTAVAFGQTEGDCT 266 (302)
T ss_dssp EECTTCC--EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred EECCCCC--EEEEEecCCCCCCceEEEEcCCCCCCC
Confidence 8877643 22333333344567899994 4554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=2.5e-07 Score=71.26 Aligned_cols=229 Identities=10% Similarity=0.055 Sum_probs=125.1
Q ss_pred cceeEEEEe--cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEee-cCCeEEEEecCCcc
Q 038568 30 MIISCLAVH--NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAH-QDCKIRVWKITASR 103 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~-~d~~i~vwd~~~~~ 103 (357)
..-..|+++ |++.++.. .. .+..++..........+. -......+++.+++ ++.+. ..+.+++++-.+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN----GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 89 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC----SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC----CccCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence 344788998 77555544 44 677776622222222222 22345678888876 44444 44445554433332
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
..... .......++++.+ +++++-..+..+..++...... ..+...
T Consensus 90 ~~~~~-------------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~ 137 (260)
T d1rwia_ 90 TVLPF-------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFT 137 (260)
T ss_dssp EECCC-------------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCC
T ss_pred eeeee-------------------------------eeeeecccccccccceeEeecccccccccccccccee-eeeeec
Confidence 21111 1224457788877 4555545556677776544322 221122
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
.......+++.+++. +++...++.|..+|... ..........-.....|+++++|+++++....+.|..
T Consensus 138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES----------NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 207 (260)
T ss_dssp SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT----------CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred ccCCcceeeecCCCCEeeecccccccccccccc----------ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence 234557889999885 56667778899998761 1111111233345688999999998888888889998
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
++....... .. . ...-.....++++++ ++++-..+++|+.++..
T Consensus 208 ~~~~~~~~~-~~-~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 208 LLAGSTTST-VL-P-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp ECTTCSCCE-EC-C-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EeCCCCeEE-EE-c-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 887654321 11 1 111223455666543 55554555656555443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.1e-06 Score=67.81 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=124.6
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec-CC--eEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-DC--KIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.|-|. +... .+.+.. +...+..-+|+||+ |+-... .+ .+.+.+...+......
T Consensus 20 ~l~i~d~-dG~~-~~~l~~---~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--------------- 79 (269)
T d2hqsa1 20 ELRVSDY-DGYN-QFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------- 79 (269)
T ss_dssp EEEEEET-TSCS-CEEEEE---ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------------
T ss_pred EEEEEcC-CCCC-cEEEec---CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---------------
Confidence 5778787 5444 444443 67788999999998 554433 22 3555555544332211
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEEEE-ecCCeEEEEEcCc--chhhhhccccccccEEEEEEecCC--e
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV-SWDRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG--V 196 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~ 196 (357)
.+........|+| ..++.. ..++...++.... ...... ...........+++++ .
T Consensus 80 ----------------~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 141 (269)
T d2hqsa1 80 ----------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQNL 141 (269)
T ss_dssp ----------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSEE
T ss_pred ----------------eeecccccceecCCCCeeeEeeecCCccceeecccccccceee--eeccccccccccccccccc
Confidence 4456677888888 444433 3344433333322 222222 2333344445566665 3
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC-e--EEEEecccCCceeeee
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR-W--IVVWERERDHRMVFAE 273 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~--i~vwd~~~~~~~~~~~ 273 (357)
+++...++...+|.... ...................|+|+++.++..+.++ . +.+.+...+.. ..
T Consensus 142 ~~~~~~~g~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~- 209 (269)
T d2hqsa1 142 AFTSDQAGRPQVYKVNI---------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QV- 209 (269)
T ss_dssp EEEECTTSSCEEEEEET---------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EE-
T ss_pred eecccccCCceEeeeec---------ccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eE-
Confidence 56666666555554431 1112223334456677789999999888766544 3 44444443332 11
Q ss_pred eccCCccceEEEeecCc--eEEEec---CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 274 ALWGHTGALLCLINVGD--LLASGS---ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~--~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
..+........|+|+ .|+-.+ ....|+++++..+. ...+....+.+...+|+|-
T Consensus 210 --~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 210 --LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp --CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCC
T ss_pred --eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeCCC
Confidence 122333444456555 554332 34578899998752 3345555677888999983
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.93 E-value=4.1e-06 Score=65.03 Aligned_cols=233 Identities=13% Similarity=0.131 Sum_probs=139.3
Q ss_pred ceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc---CCCCceEEEEEecCc---eE-EeecCCeEEEEecC
Q 038568 31 IISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL---SSSGSVKSITFHITK---IF-TAHQDCKIRVWKIT 100 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~---l~-~~~~d~~i~vwd~~ 100 (357)
.-..|+++ |+++++-..+ .|++||. + ++.+..+.... ........+++.++. ++ ..+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-E-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-T-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeC-C-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 35788987 6666665566 9999997 4 45555553211 122234556665543 32 33445567777654
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
++....+.. ........+++.+ .++++....+.+.+++.. ++.+..+
T Consensus 102 -g~~~~~~~~-----------------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~ 150 (279)
T d1q7fa_ 102 -GQFVRKFGA-----------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF 150 (279)
T ss_dssp -SCEEEEECT-----------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred -ccceeecCC-----------------------------CcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecc
Confidence 322222211 2334556777777 555555666778888754 4444443
Q ss_pred c-ccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEee--ccccceeEEEEecCCCEEEEEec
Q 038568 179 N-KAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 179 ~-~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
. ..+......+++.+++. +++....+.|++||.. .+.+..+. +.......|+++++|+++++-..
T Consensus 151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-----------G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~ 219 (279)
T d1q7fa_ 151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-----------GQYLRQIGGEGITNYPIGVGINSNGEILIADNH 219 (279)
T ss_dssp ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-----------CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred cccccccccceeeeccceeEEeeeccccceeeeecC-----------CceeeeecccccccCCcccccccCCeEEEEECC
Confidence 1 23456678889999885 6667778899999975 22333332 23445788999999997776543
Q ss_pred -CCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCC
Q 038568 255 -DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 255 -dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~ 309 (357)
++.|.+|+.. ++....+.. .........++..++ .|++++.++.|++|.....
T Consensus 220 ~~~~v~~f~~~-G~~~~~~~~-~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 220 NNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp SSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred CCcEEEEECCC-CCEEEEEeC-CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence 4579999864 443222221 112223456666665 5556667899999998764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.91 E-value=2.3e-06 Score=69.23 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=135.3
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEee--cCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAH--QDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~--~d~~i~vwd~~ 100 (357)
....+.-|+|+ +++|+++..+.+..|.+............ ........+++++++ +++.. ..+++..+.+.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH--PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE--ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee--cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34556779998 88888876667777776222222222111 022334566677765 22222 24556555543
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcchhhh-
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLE- 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~- 176 (357)
.............. ...... .. ..-......+.++.|+| ++++++.. ...|.+|+......+.
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~--------~~----~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~ 182 (365)
T d1jofa_ 116 KFAGYGNVFSVSET-GKLEKN--------VQ----NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp SSCCEEEEEEECTT-CCEEEE--------EE----EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred CCCCcceeEeeeec-ceecCc--------cc----CcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee
Confidence 22111111110000 000000 00 00001223477999999 66666654 4578888765432221
Q ss_pred --hc-cccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEe--------------eccccce
Q 038568 177 --SV-NKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL--------------VKHRSTV 237 (357)
Q Consensus 177 --~~-~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v 237 (357)
.. ..........++|+|++. .++...++.|.+|++....... ....... ..+....
T Consensus 183 ~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (365)
T d1jofa_ 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP-----VYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----EEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred ccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE-----EEEeeeeccccccccccccccccccCCc
Confidence 11 023356788999999994 4566678999999986221110 0011111 1122345
Q ss_pred eEEEEecCCCEEEEEec------CCeEEEEecccCCceeee---eeccCCccceEEEeec---CceE-EEecCCCeEEEe
Q 038568 238 NALALNGDGSLLFSGGC------DRWIVVWERERDHRMVFA---EALWGHTGALLCLINV---GDLL-ASGSADRTVRIW 304 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~---~~~~~~~~~v~~~~~~---~~~l-~~~~~dg~i~vw 304 (357)
..+.++|+|++|+++.. .+.|..|++.....+... ............++++ +++| ++...++.|.+|
T Consensus 258 ~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~ 337 (365)
T d1jofa_ 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred cceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence 67899999999888743 223777777654332211 1111122233445554 4555 555678999999
Q ss_pred eCCCC
Q 038568 305 QRGKE 309 (357)
Q Consensus 305 ~~~~~ 309 (357)
+++..
T Consensus 338 ~~~~~ 342 (365)
T d1jofa_ 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 98654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.84 E-value=8.1e-06 Score=64.39 Aligned_cols=241 Identities=10% Similarity=0.060 Sum_probs=131.8
Q ss_pred eeEEEEe--cceEEEeeC-------C-ceEEEeccCCccccceeccc-cCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 32 ISCLAVH--NSLLYAASL-------N-EINVFDLISDYSHVDTFSND-LSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~-------d-~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
...++|. |+++++... + .|..||. +++......... ......-..++|.+++ ++++.....+...+
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~-~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEEC-CCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4456787 776665432 3 4777887 554432222110 0012335789999875 77777667788888
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEec----------------C
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSW----------------D 161 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~----------------d 161 (357)
.+............. ..-...+++++.+ ..|..+.. .
T Consensus 99 ~~g~~~~~~~~~~~g--------------------------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEG--------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp TTSCEEECCSBCTTS--------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred CCCcEEEEEeccccc--------------------------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 765432211111100 0011235566666 33332221 2
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-----eE-EEEeCCCeEEEEEccccccccccccceeeeeEeec-cc
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-----VV-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-HR 234 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~ 234 (357)
|.|..++.. ++.. .+ ...-...+.++|+|++ .| ++-+..+.|..||+...... ...+....+.. ..
T Consensus 153 G~v~~~~~d-g~~~-~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~----~~~~~~~~~~~~~~ 225 (314)
T d1pjxa_ 153 GSIYCFTTD-GQMI-QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----ENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEEEECTT-SCEE-EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----EEEEEEEECCCCSS
T ss_pred ceEEEEeec-Ccee-Ee-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc----ceeeEEEEcccccc
Confidence 334444332 2221 11 1222334678888764 34 44567888999987621100 00111112221 22
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
.....+++.++|++.++....+.|.+||.+.+.....+. .......+++|.++ ++++.+.+|.|...++...
T Consensus 226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 345689999999988888788999999988765332222 23345677888765 6677778898888887643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.84 E-value=1.1e-05 Score=63.94 Aligned_cols=224 Identities=10% Similarity=0.089 Sum_probs=127.5
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeec-----CCeEEEEecC
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQ-----DCKIRVWKIT 100 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~-----d~~i~vwd~~ 100 (357)
..+..++|+ |++.++-..+ .|..|+. ++.+....+.. .......|++.+++ |+.+.. .+.+...+..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p-~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINP-ETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECT-TTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEEC-CCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 345688998 7766666666 8999998 66555555544 56678899999987 554432 2234444444
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecC-------CeEEEEEcCcc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWD-------RSFKIWNASNY 172 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d-------g~i~iwd~~~~ 172 (357)
........... .-......+++.+ ..+..+... +.+..++...
T Consensus 116 ~~~~~~~~~~~----------------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg- 166 (319)
T d2dg1a1 116 GDNLQDIIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF- 166 (319)
T ss_dssp SCSCEEEECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-
T ss_pred CceeeeeccCC----------------------------CcccCCcceeEEeccceeecccccccccCcceeEEEeccc-
Confidence 33322221111 1123456777777 444444322 2344444432
Q ss_pred hhhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 173 KCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
+.+..+ ...-...+.++|+|++ . +++-+..+.|..||+....... ...................|+++++|++.+
T Consensus 167 ~~~~~~-~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~--~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V 243 (319)
T d2dg1a1 167 RTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI--QPFGATIPYYFTGHEGPDSCCIDSDDNLYV 243 (319)
T ss_dssp CCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE--EEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred ceeEEE-eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee--ccccceeeeccCCccceeeeeEcCCCCEEE
Confidence 222222 2223446789999998 3 4555678899999986211100 000111111111223356899999999888
Q ss_pred EEecCCeEEEEecccCCceeeeeecc---CCccceEEEeecCc
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALW---GHTGALLCLINVGD 290 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~ 290 (357)
+...++.|.+||.. ++.+..+.... ++...+.++++.+.
T Consensus 244 a~~~~g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~ 285 (319)
T d2dg1a1 244 AMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG 285 (319)
T ss_dssp EEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred EEcCCCEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence 88889999999964 66544443221 33445678888664
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=2.3e-06 Score=65.97 Aligned_cols=213 Identities=8% Similarity=0.023 Sum_probs=117.4
Q ss_pred CccceeEEEEe--cceEEEeeCC----ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE-eecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN----EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT-AHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~-~~~d~~i~vwd 98 (357)
+...+..-+|| |+.||-.... .+.+.+. ..+. ...+.. +.+......|+|++ ++. ...++...++.
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGA-VRQVAS---FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 111 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-TTCC-EEEEEC---CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeec-ccCc-eeEEee---eecccccceecCCCCeeeEeeecCCccceee
Confidence 56677889999 8998866533 3555555 4433 334443 78888999999987 433 33333333333
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCe--EEEEEcCcch
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRS--FKIWNASNYK 173 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~--i~iwd~~~~~ 173 (357)
............ ..........+.+ ..+++...+|. |...++..+.
T Consensus 112 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 112 MDLASGQIRQVT-----------------------------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA 162 (269)
T ss_dssp EETTTCCEEECC-----------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccccccceeee-----------------------------eccccccccccccccccceecccccCCceEeeeeccccc
Confidence 222211111100 1122222333333 34555555554 4455555443
Q ss_pred hhhhccccccccEEEEEEecCCe-E-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGV-V-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.... ...........|+|++. + ......+...+|.... . .. . ..............|+|||+.|+.
T Consensus 163 ~~~~--~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~------~--~~-~-~~~~~~~~~~~~p~~SPDG~~i~f 230 (269)
T d2hqsa1 163 PQRI--TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------A--TG-G-VQVLSSTFLDETPSLAPNGTMVIY 230 (269)
T ss_dssp CEEC--CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------T--TC-C-EEECCCSSSCEEEEECTTSSEEEE
T ss_pred ceee--ecccccccccccccccceeEEEeecCCceeeeEeec------c--cc-c-ceEeecCccccceEECCCCCEEEE
Confidence 3222 34556677788999994 4 4444455555555441 1 11 1 122234455677899999998875
Q ss_pred Eec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 252 GGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 252 ~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
.+. ...|+++++..... ..+....+.+...+|+|-
T Consensus 231 ~s~~~~~~~l~~~~~dg~~~----~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 231 SSSQGMGSVLNLVSTDGRFK----ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEETTEEEEEEEETTSCCE----EECCCSSSEEEEEEECCC
T ss_pred EEcCCCCcEEEEEECCCCCE----EEEeCCCCcEEeEEeCCC
Confidence 544 34688999986643 233345566777788873
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.75 E-value=1.5e-05 Score=63.01 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=122.9
Q ss_pred CCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 72 SGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...+..++|.+++ +++-...+.|..|+.++++...... ........++
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~------------------------------~~~~~p~gla 88 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV------------------------------SHKANPAAIK 88 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE------------------------------CSSSSEEEEE
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe------------------------------CCCCCeeEEE
Confidence 3445688998877 4444567888888877654333222 2234567888
Q ss_pred Eec-CeEEEEec-----CCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCCeEEEEeCC-------CeEEEEEccccc
Q 038568 150 VKQ-GLMYSVSW-----DRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNGVVYTGSAD-------GRIRVWERSVVD 215 (357)
Q Consensus 150 ~~~-~~l~~~~~-----dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~ 215 (357)
+.+ ..++.+.. .+.+...+........... .......+.+++.++|.+..+... +.+..++..
T Consensus 89 ~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--- 165 (319)
T d2dg1a1 89 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--- 165 (319)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT---
T ss_pred ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc---
Confidence 888 44444332 2345555554443322221 122345778999999976655432 234444432
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCcee-ee-----eeccCCccceEEEeec
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRMV-FA-----EALWGHTGALLCLINV 288 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~-~~-----~~~~~~~~~v~~~~~~ 288 (357)
...+..+...-...+.++|+|+++.|+.+ +..+.|+.|++....... .. ....+. ...-.++++
T Consensus 166 --------g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD 236 (319)
T d2dg1a1 166 --------FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID 236 (319)
T ss_dssp --------SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB
T ss_pred --------cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEc
Confidence 11122222223345789999999866544 568899999986432211 11 111111 122344544
Q ss_pred --CceEEEecCCCeEEEeeCCCCcceeeeeee---cCCcCceEEEEEeeCCC
Q 038568 289 --GDLLASGSADRTVRIWQRGKENCYRCMAFL---EGHEKPVKSLVAISSSS 335 (357)
Q Consensus 289 --~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~ 335 (357)
+++.++....+.|.+||. +++....+... .++...+++++|.++..
T Consensus 237 ~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 237 SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence 456677777899999996 45333222211 13445678999988765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.71 E-value=2.7e-05 Score=60.67 Aligned_cols=223 Identities=9% Similarity=0.065 Sum_probs=134.5
Q ss_pred EEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeee
Q 038568 34 CLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 34 ~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..|+ +.+..+=-.. .|.-||. ++++. ..+. ....+.++++.+++ |+.++.+ .+.++|..+++.....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~-~~g~~-~~~~----~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHL-ASGRK-TVHA----LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEET-TTTEE-EEEE----CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEEC-CCCeE-EEEE----CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEe
Confidence 44566 4555554456 8999998 66543 3444 55678899998887 7777665 5889999887643322
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEec-----CCeEEEEEcCcchhhhhccccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSW-----DRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
..... .....++++.+.+ ..+..++. .+.-.+|.+..++..... ..
T Consensus 95 ~~~~~--------------------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~--~~ 146 (295)
T d2ghsa1 95 ELESD--------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF--AD 146 (295)
T ss_dssp CSSTT--------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE--EE
T ss_pred eeecC--------------------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe--ec
Confidence 21110 1223577788887 44444432 234456666555433332 23
Q ss_pred cccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 183 EDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 183 ~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
-...+.+++++++. +++-+..+.|..|++........ ..........+.......+++..+|++.++.-..+.|..
T Consensus 147 ~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~--~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~ 224 (295)
T d2ghsa1 147 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT--GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 224 (295)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS--SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cCCcceeeecCCCceEEEeecccceeeEeeecccccccc--cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEE
Confidence 34567899999983 56667788999998752111111 111122223344556788999999998877777889999
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc----eEEEecC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD----LLASGSA 297 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~ 297 (357)
||.+ ++....+.. ....+++++|-+. +++|...
T Consensus 225 ~dp~-G~~~~~i~l---P~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 225 YDTD-GNHIARYEV---PGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ECTT-CCEEEEEEC---SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ecCC-CcEeeEecC---CCCceEEEEEeCCCCCEEEEEECC
Confidence 9965 554433332 2345788888653 5555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=0.00024 Score=55.19 Aligned_cols=211 Identities=11% Similarity=0.053 Sum_probs=122.5
Q ss_pred EEEEecC-c-eEEe-ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 77 SITFHIT-K-IFTA-HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 77 ~l~~~~~-~-l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
...|.+. + |+-. -..+.|..||..+++.. .. .....+.++++.+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-------------------------------~~~~~~~~i~~~~d 69 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH-------------------------------ALPFMGSALAKISD 69 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-------------------------------ECSSCEEEEEEEET
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-------------------------------ECCCCcEEEEEecC
Confidence 4557753 3 4433 35678888888776432 11 1234567788877
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhcc---ccccccEEEEEEecCCeEEEEeC-----CCeEEEEEccccccccccccce
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVN---KAHEDAVNAVVVSDNGVVYTGSA-----DGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
..++.++.+ .+..+|..+++...... ......++.+.+.|+|.+..+.. .+.-.+|.+. ..
T Consensus 70 g~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~----------~g 138 (295)
T d2ghsa1 70 SKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA----------KG 138 (295)
T ss_dssp TEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE----------TT
T ss_pred CCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec----------CC
Confidence 666666665 58899998876432211 12234688999999997655543 2234455554 11
Q ss_pred eeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEecccCCc-----eeeeeeccCCccceEEEeecCc--eEEEec
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWERERDHR-----MVFAEALWGHTGALLCLINVGD--LLASGS 296 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~--~l~~~~ 296 (357)
+..... ..-...+.++|+++++.++ +-+..+.|..|+++.... ........+..+..-.++.+.+ +.++.-
T Consensus 139 ~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~ 217 (295)
T d2ghsa1 139 KVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 217 (295)
T ss_dssp EEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred cEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee
Confidence 222222 2233457899999998655 445678899998753211 1112222333444555566544 555555
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCC
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSS 335 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 335 (357)
..+.|..||.. + +.+..+.-....+++++|- ++.+
T Consensus 218 ~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 218 GEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp TTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTSC
T ss_pred CCCceEEecCC-C---cEeeEecCCCCceEEEEEeCCCCC
Confidence 67789999964 4 4445555445568999996 4544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00029 Score=58.58 Aligned_cols=147 Identities=9% Similarity=-0.024 Sum_probs=82.0
Q ss_pred EEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce
Q 038568 78 ITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL 154 (357)
Q Consensus 78 l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 154 (357)
..|.++. ++.-..+|.|.+||+.+++....+.... ...-.+....++| ++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~---------------------------~~~~~~~~~~~SpD~~~ 74 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKK---------------------------IESLRAIRYEISPDREY 74 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTT---------------------------TTTTTCSEEEECTTSSE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCcc---------------------------ccccccceeEECCCCCe
Confidence 4577776 5555678899999998876533332211 1122445566777 55
Q ss_pred EEEE---------ecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 155 MYSV---------SWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 155 l~~~---------~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
++.. +..+.+.++|+.++....... ......+....|+|+|. ++-. .++.|.+.+.......... ..
T Consensus 75 vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt-~~ 152 (465)
T d1xfda1 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVV-ST 152 (465)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEE-CC
T ss_pred EEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCceEEEe-cc
Confidence 5444 335788999998876433211 23344566788999994 5444 3677887776521110000 00
Q ss_pred eeeeeEeeccc---------cceeEEEEecCCCEEEEEe
Q 038568 224 HMLVTTLVKHR---------STVNALALNGDGSLLFSGG 253 (357)
Q Consensus 224 ~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~ 253 (357)
...-..+.+.. ..-..+.|||||++|+...
T Consensus 153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 00000011111 1124678999999998865
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.0016 Score=54.00 Aligned_cols=202 Identities=6% Similarity=-0.007 Sum_probs=104.5
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe---------ecCCeEEEEecCCcccee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA---------HQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~---------~~d~~i~vwd~~~~~~~~ 106 (357)
+.++.. ..+ .|.+||+ .+++....+.........+....|+||+ ++.. +..+.+.++|+.++....
T Consensus 28 ~~~~~~-~~~g~i~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~ 105 (465)
T d1xfda1 28 TEFIYR-EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS 105 (465)
T ss_dssp SCBCCC-CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred CcEEEE-eCCCcEEEEEC-CCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee
Confidence 444433 455 8999999 7765543333321133467788899997 4443 335678889988776432
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
. .... .....+....|+| +.+|-.. ++.|.+.+...+..++....+...
T Consensus 106 l-~~~~---------------------------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~ 156 (465)
T d1xfda1 106 L-DPPE---------------------------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG 156 (465)
T ss_dssp C-CCTT---------------------------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT
T ss_pred c-cCcc---------------------------CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc
Confidence 2 1111 1223344556777 4554443 566777776655443332111111
Q ss_pred -----------------cEEEEEEecCC-eEEEEe-CCCeEEEEEcccccccc-----------ccccc-eeeeeE----
Q 038568 185 -----------------AVNAVVVSDNG-VVYTGS-ADGRIRVWERSVVDHNK-----------ERKSR-HMLVTT---- 229 (357)
Q Consensus 185 -----------------~v~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~-----------~~~~~-~~~~~~---- 229 (357)
.-.++-|+||| +|+... .+..|..+.+....... .+... ...+..
T Consensus 157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~ 236 (465)
T d1xfda1 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (465)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence 12467899999 455543 34445555432111000 00000 000000
Q ss_pred -------------eeccccceeEEEEecCCCEEEEEec----CCeEEEEecccCCceee
Q 038568 230 -------------LVKHRSTVNALALNGDGSLLFSGGC----DRWIVVWERERDHRMVF 271 (357)
Q Consensus 230 -------------~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~ 271 (357)
.......+..+.|+|++++++.... ...|.++|..+++....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~ 295 (465)
T d1xfda1 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (465)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence 0111223677899999876655432 12588889888765433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.0036 Score=47.37 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=126.0
Q ss_pred eEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+|+.+....|+-.++ ++.+....+. ....+.+++|.+.. |+-+ ..++.|..-+++...........
T Consensus 3 fLl~s~~~~I~~~~l-~~~~~~~~~~----~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~------ 71 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTL-DRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ 71 (266)
T ss_dssp EEEEECBSSEEEEET-TSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------
T ss_pred EEEEECCCeEEEEEC-CCCcceeeeC----CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEE------
Confidence 344444447888888 6644433333 45567789998753 4443 34566666665432211111000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
.......+..+++.. ++..+-...+.|.+.++........+ .........++++|.
T Consensus 72 --------------------~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 72 --------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPV 130 (266)
T ss_dssp --------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETT
T ss_pred --------------------EeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcc
Confidence 001123455677765 44444456678999998765443333 344566788999885
Q ss_pred -CeEEEEe--CCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCce
Q 038568 195 -GVVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRM 269 (357)
Q Consensus 195 -~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~ 269 (357)
++|+... ..+.|...++. ......+ ...-.....+++++.++.|+-+ ...+.|...++......
T Consensus 131 ~g~ly~~~~~~~~~I~r~~~d-----------Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 131 HGFMYWTDWGTPAKIKKGGLN-----------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (266)
T ss_dssp TTEEEEEECSSSCEEEEEETT-----------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cCeEEEeccCCCcceeEeccC-----------CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence 4544332 34556666654 1111222 2223456889999977766655 55788999998755433
Q ss_pred eeeeeccCCccceEEEeecCceE-EEecCCCeEEEeeCCCCcc
Q 038568 270 VFAEALWGHTGALLCLINVGDLL-ASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~ 311 (357)
.... ..........++..++.| .+-..++.|...+..+++.
T Consensus 200 ~~~~-~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 200 TILE-DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp EEEE-CTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEe-CCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcc
Confidence 2222 222223345677777744 4445678888888777643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.67 E-value=0.0045 Score=46.99 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=41.2
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee-cC-----CeEEEEecCCccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH-QD-----CKIRVWKITASRQ 104 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~-~d-----~~i~vwd~~~~~~ 104 (357)
|+.+|-.+.+.|.+.|+ ++++.. .+.. +.+.+...+|+||+ |+-.. .+ ..|.+++..+++.
T Consensus 12 G~~v~f~~~~dl~~~d~-~~g~~~-~Lt~---~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 12 GDRIIFVCCDDLWEHDL-KSGSTR-KIVS---NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp TTEEEEEETTEEEEEET-TTCCEE-EEEC---SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCEEEEEeCCcEEEEEC-CCCCEE-EEec---CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 77777666558888899 776654 4554 77888999999998 55432 22 2366667666654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.44 E-value=0.018 Score=45.90 Aligned_cols=159 Identities=9% Similarity=0.120 Sum_probs=88.1
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceee-----------eecCCCeEEEecccccccc-cccccEEEEEEec
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR-----------SVLPNNYVTVRRHKKRLWL-EHWDAVSDLVVKQ 152 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 152 (357)
+.+|+..|.++|+-+.+.+.+..+..+......--. ...+.....+......++. +-.. =-.+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~H-HP~~S~Td 94 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLH-HVHMSFTE 94 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBC-CEEEEEET
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcC-CCcccccC
Confidence 889999999999999999988888776543221100 0001111111111111110 1111 11455554
Q ss_pred -----CeEEEE-ecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEEEeCCC------------------e
Q 038568 153 -----GLMYSV-SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYTGSADG------------------R 205 (357)
Q Consensus 153 -----~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~------------------~ 205 (357)
++++.. ..+++|.+.|+++.++.+.+.......+..++..++. +++..+.+. .
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~ 174 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 174 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence 455444 4688999999999887664433555666777765543 566655532 2
Q ss_pred EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+..+|.. ..+...... -......++++++|+++++.+.+
T Consensus 175 ~t~ID~~----------tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 175 FTAVDAD----------KWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EEEEETT----------TTEEEEEEE-ESSCCCCEEECSSSSEEEEEESC
T ss_pred EEEEecC----------CceEEEEee-eCCChhccccCCCCCEEEEEecc
Confidence 4556665 122222222 12346678999999999887753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.17 E-value=0.053 Score=45.79 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=43.1
Q ss_pred cceEEEee-CC-ceEEEeccCCccccceeccccCCC--------CceEEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 39 NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSS--------GSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~--------~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..++.++ .+ .|...|..++++.+-++....... ..-..+++..+.++.++.|+.+.-.|.++++.....
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhccc
Confidence 44455544 35 777777624577776654211000 011245666777888999999999999999865443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.032 Score=41.85 Aligned_cols=244 Identities=9% Similarity=0.029 Sum_probs=132.6
Q ss_pred ceEEEeeCCceEEEeccCCcccc-----ceeccccCCCCceEEEEEecCc--eE-EeecCCeEEEEecCCccceeeeeec
Q 038568 40 SLLYAASLNEINVFDLISDYSHV-----DTFSNDLSSSGSVKSITFHITK--IF-TAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 40 ~~l~t~~~d~i~iw~~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~--l~-~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
.+|+-+....|+-.++ +..... ..+.. +...+..|+|.+.. ++ +-..++.|+..+++.......+.
T Consensus 2 ~fLl~s~~~~I~~~~l-d~~~~~~~~~~~~~~~---~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~-- 75 (263)
T d1npea_ 2 THLLFAQTGKIERLPL-ERNTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-- 75 (263)
T ss_dssp EEEEEEEEEEEEEEEE-SSSCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--
T ss_pred CEEEEeCCCeEEEEEC-CCcccccccccccccc---CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--
Confidence 4555555456666666 332211 11222 44567788888643 44 44556778888887654332221
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEE
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
.....+.++++.. +.|+ +-...+.|.+.++........+ .........
T Consensus 76 ----------------------------~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~p~~ 126 (263)
T d1npea_ 76 ----------------------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-DTGLVNPRG 126 (263)
T ss_dssp ----------------------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEEE
T ss_pred ----------------------------eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-cccccCCcE
Confidence 1123567788775 5554 4455678999998754432222 233456789
Q ss_pred EEEecCC-eEEEE-eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEeccc
Q 038568 189 VVVSDNG-VVYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERER 265 (357)
Q Consensus 189 ~~~~~~~-~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 265 (357)
++++|.. +++.. ...+..+++..... ...........-.....|++++.++.|..+ ...+.|...+++.
T Consensus 127 l~vdp~~g~ly~t~~~~~~~~I~r~~~d--------G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 127 IVTDPVRGNLYWTDWNRDNPKIETSHMD--------GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETT--------SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred EEEecccCcEEEeecCCCCcEEEEecCC--------CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 9999865 44333 22223334433210 011111122223456789999877766555 4678899999976
Q ss_pred CCceeeeeeccCCccceEEEeecCceE-EEecCCCeEEEeeCCCCcceeeeeee-cCCcCceEEEEEeeC
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGDLL-ASGSADRTVRIWQRGKENCYRCMAFL-EGHEKPVKSLVAISS 333 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~ 333 (357)
........ +-.. ...++..++.| .+-...+.|...|..+++ ....+ ........+|...++
T Consensus 199 ~~~~~v~~---~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~---~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 199 PGRRKVLE---GLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISK---EMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEEEEEEE---CCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTE---EEEEECCSSCCCCCCEEEECS
T ss_pred CCeEEEEC---CCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCc---cceEECCCCCCCcceEEEeCC
Confidence 54332222 2222 24566666644 455567888888988873 23322 223334556665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.06 E-value=0.035 Score=41.79 Aligned_cols=245 Identities=9% Similarity=0.126 Sum_probs=137.9
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|.|-|+ .+......-.. .--+.-.+|.. +++--...++.++|+++.+.++...
T Consensus 46 ~VvIidl-~n~~~~~Rrpi------~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~------------------ 100 (327)
T d1utca2 46 QVVIIDM-NDPSNPIRRPI------SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT------------------ 100 (327)
T ss_dssp EEEEEET-TSTTSCEEEEC------CCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE------------------
T ss_pred eEEEEEC-CCCCcceeccc------chhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEE------------------
Confidence 8999999 54332221111 11233455665 3333336789999999887655443
Q ss_pred EEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcc-hhhhhccccc----cccEEEEEEecCCe--EEE
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNY-KCLESVNKAH----EDAVNAVVVSDNGV--VYT 199 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~--l~~ 199 (357)
...+|.-..|-. +.|+..+ +..|+-|+++.. .+...+ ..| ...|-.-..+++.. +++
T Consensus 101 -------------~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~ 165 (327)
T d1utca2 101 -------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLT 165 (327)
T ss_dssp -------------CSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred -------------cCCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhh-hhcccccCceEEEEEECCCCCEEEEE
Confidence 234666667766 6666665 457999998542 344444 222 34566666677762 333
Q ss_pred E--eC----CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC---CEEEEE---ecCCeEEEEecccCC
Q 038568 200 G--SA----DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG---SLLFSG---GCDRWIVVWERERDH 267 (357)
Q Consensus 200 ~--~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~---~~dg~i~vwd~~~~~ 267 (357)
| .. .|.+.+|..+ ...-+.+.+|.+.-..+.+..+. ..++.+ ...++++|.++....
T Consensus 166 GI~~~~~~i~G~mQLYS~e-----------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~ 234 (327)
T d1utca2 166 GISAQQNRVVGAMQLYSVD-----------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 234 (327)
T ss_dssp EEEEETTEEEEEEEEEETT-----------TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCC
T ss_pred eEecCCCceeEEEEEEEec-----------cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCc
Confidence 3 22 3667888875 23344556665544444332211 122222 234689999886532
Q ss_pred c---ee---eeeecc---CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 268 R---MV---FAEALW---GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 268 ~---~~---~~~~~~---~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
. .. ....+. .-..--.++..+.+ .+..-+.-|.|++||++++ .++..-+-..++|...+-..+..
T Consensus 235 ~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~~iF~~a~~~~~~- 310 (327)
T d1utca2 235 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETIFVTAPHEATA- 310 (327)
T ss_dssp TTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEETTTT-
T ss_pred cCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecCCCceEEeccCCCCc-
Confidence 1 11 111111 11233345556655 7788888999999999998 66776666677777555554433
Q ss_pred CCCCeEEEEEcCCCCeEE
Q 038568 337 ASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~ 354 (357)
=+++...+|.|.
T Consensus 311 ------Gi~~VNr~GqVl 322 (327)
T d1utca2 311 ------GIIGVNRKGQVL 322 (327)
T ss_dssp ------EEEEEETTSEEE
T ss_pred ------eEEEECCCCeEE
Confidence 344444677663
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.98 E-value=0.081 Score=44.65 Aligned_cols=78 Identities=5% Similarity=-0.066 Sum_probs=46.5
Q ss_pred EEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceEE-EEEecCceEEee------cCCeEEEEecCCccc
Q 038568 34 CLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVKS-ITFHITKIFTAH------QDCKIRVWKITASRQ 104 (357)
Q Consensus 34 ~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~-l~~~~~~l~~~~------~d~~i~vwd~~~~~~ 104 (357)
.+++.+..++.++.| .+.-.|. ++++.+........+. ..++. -....+.++.+. .+|.|.-+|+.+++.
T Consensus 110 g~a~~~~~i~~~~~~g~l~alda-~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~ 188 (571)
T d2ad6a1 110 GLAYGAGQIVKKQANGHLLALDA-KTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp CCEEETTEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cceeeCCeEEEEeCCCcEEeeeh-hhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE
Confidence 355665667777778 8888898 8887765554211011 11111 112234455544 367899999999987
Q ss_pred eeeeeecC
Q 038568 105 HQLVSTLP 112 (357)
Q Consensus 105 ~~~~~~~~ 112 (357)
.-.....+
T Consensus 189 ~W~~~t~~ 196 (571)
T d2ad6a1 189 KWRAFATG 196 (571)
T ss_dssp EEEEESSS
T ss_pred EEEEeccC
Confidence 76665543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.98 E-value=0.082 Score=44.67 Aligned_cols=69 Identities=9% Similarity=0.218 Sum_probs=45.6
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccC-------CCCce-EEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLS-------SSGSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~-------~~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..|++++.+ .|.-+|. ++++.+-.+..... -...+ ..+.+..+.++.++.|+.+.-.|..+++..-..
T Consensus 77 ~g~vyv~t~~~~v~AlDa-~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeC-CCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecc
Confidence 5566777777 9999999 88888776542110 00111 234555666888888999988898888765443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.82 E-value=0.08 Score=42.11 Aligned_cols=71 Identities=17% Similarity=0.010 Sum_probs=44.9
Q ss_pred eeEEEEecCCCEEEEEec-CCeEEEEecccCCcee--------eeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 237 VNALALNGDGSLLFSGGC-DRWIVVWERERDHRMV--------FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
...+.++|||+++++++. +.++.|+|++.-.... .+.......-.-+.-+|+++ ...+---|..|.-|+
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence 567899999998877664 8899999997422110 00000011112244567766 444556799999999
Q ss_pred CC
Q 038568 306 RG 307 (357)
Q Consensus 306 ~~ 307 (357)
+.
T Consensus 357 ~~ 358 (459)
T d1fwxa2 357 IE 358 (459)
T ss_dssp HH
T ss_pred cc
Confidence 85
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.58 E-value=0.12 Score=40.96 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=38.6
Q ss_pred cceEEEeeCC------------ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC-CeEEEEecCCcc
Q 038568 39 NSLLYAASLN------------EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD-CKIRVWKITASR 103 (357)
Q Consensus 39 ~~~l~t~~~d------------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d-~~i~vwd~~~~~ 103 (357)
|+.++.|+.+ .+.+||. .+++-........++.......++.+++ ++.|+.+ ..+.+||..+..
T Consensus 31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~-~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~ 109 (387)
T d1k3ia3 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDP-STGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 109 (387)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECT-TTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CEEEEEEeecCcccCCCCCceeEEEEEEC-CCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence 7888877732 2678999 6644322111111243444566777877 5555443 579999988765
Q ss_pred c
Q 038568 104 Q 104 (357)
Q Consensus 104 ~ 104 (357)
.
T Consensus 110 w 110 (387)
T d1k3ia3 110 W 110 (387)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.55 E-value=0.095 Score=39.43 Aligned_cols=234 Identities=9% Similarity=0.166 Sum_probs=121.8
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeee-eecCcccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLV-STLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~ 116 (357)
.+.||.-+..++.|+|+ ++.+.++.+. ..++|.-=.|-.+. |+-.+ +..|.-|+++.......+ ...+...
T Consensus 74 ~~IiALrag~~LQiFnl-etK~klks~~----~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~- 146 (327)
T d1utca2 74 SKVIALKAGKTLQIFNI-EMKSKMKAHT----MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA- 146 (327)
T ss_dssp SSEEEEEETTEEEEEET-TTTEEEEEEE----CSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT-
T ss_pred CcEEEEecCCeEEEEeh-hHhhhhceEE----cCCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhccccc-
Confidence 45566555339999999 9988888888 66788777887665 44444 467999999654322211 1111100
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 195 (357)
....+.........| -.+..++-.++.+ .|.+.+|..+... -+.+ .+|......+.+..+.
T Consensus 147 -------~~QIInY~~d~~~kW----~~l~GI~~~~~~i-----~G~mQLYS~er~~-sQ~i-eGhaa~F~~~~~~g~~~ 208 (327)
T d1utca2 147 -------GCQIINYRTDAKQKW----LLLTGISAQQNRV-----VGAMQLYSVDRKV-SQPI-EGHAASFAQFKMEGNAE 208 (327)
T ss_dssp -------TCEEEEEEECTTSCE----EEEEEEEEETTEE-----EEEEEEEETTTTE-EEEE-CCSEEEEEEECCTTCSS
T ss_pred -------CceEEEEEECCCCCE----EEEEeEecCCCce-----eEEEEEEEeccCc-Cccc-cceeeeeEEEEcCCCCC
Confidence 011111111111111 1122222222221 3678899876532 2333 5665555554443222
Q ss_pred --eE-EEE---eCCCeEEEEEcccccc-ccccccceeeeeEee---ccccceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 196 --VV-YTG---SADGRIRVWERSVVDH-NKERKSRHMLVTTLV---KHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 196 --~l-~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
.+ +.+ ...+++.+.++..... ..... .+....+. ....-.-++..++.-..+..-+.-|.|++||+.+
T Consensus 209 ~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~--kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT 286 (327)
T d1utca2 209 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP--KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 286 (327)
T ss_dssp CEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC--CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred CceEEEEEECCCCCcEEEEEEcCCCccCCCCCc--ceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence 12 221 2336888888874221 11100 11111111 1234456788898888899999999999999999
Q ss_pred CCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEE
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVR 302 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~ 302 (357)
+..+..-+ . ....|...+.+.+ -+++...+|.|.
T Consensus 287 gt~i~~nR-I--s~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 287 GTCIYMNR-I--SGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp CCEEEEEE-C--CSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ccEEEEee-c--CCCceEEeccCCCCceEEEECCCCeEE
Confidence 98653332 2 2333333333222 444444555543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.50 E-value=0.19 Score=42.49 Aligned_cols=114 Identities=6% Similarity=-0.039 Sum_probs=61.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccC-------CCCc-eEEEEEecC------ceEEeecCCeEEEEecCCcc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLS-------SSGS-VKSITFHIT------KIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~-------~~~~-v~~l~~~~~------~l~~~~~d~~i~vwd~~~~~ 103 (357)
|.++++.+.+ .+...|..++++.+-.+..... .... -+.+++.++ .++.++.|+.|.-.|.++++
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~ 142 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence 3444444544 6666665246777665542100 0001 134555443 28888999999999999998
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEec------CCeEEEEEcCcchhhh
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSW------DRSFKIWNASNYKCLE 176 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~ 176 (357)
............ ...++ .-.+..+.++.+.. .|.|+-+|+++|+.+.
T Consensus 143 ~~w~~~~~d~~~--------------------------~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 143 TVWKVENSDIKV--------------------------GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (596)
T ss_dssp EEEEEECCCGGG--------------------------TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred eecccccccccc--------------------------ccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence 765543211000 00000 01111255555543 4889999999998776
Q ss_pred hc
Q 038568 177 SV 178 (357)
Q Consensus 177 ~~ 178 (357)
++
T Consensus 197 ~~ 198 (596)
T d1w6sa_ 197 RA 198 (596)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.48 E-value=0.1 Score=39.01 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=111.6
Q ss_pred CccceeEEEEe--cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEec--CceE-EeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI--TKIF-TAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~d~~i~vwd~~ 100 (357)
+...+.+|+|+ .+.|.-+. .+ .|+..++ +.......+.. ....+.+|++.. +.|+ +-...+.|.+.+++
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l-~g~~~~~v~~~---~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEc-ccCCcEEEEEe---ccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 44567889998 56666554 44 8888888 65444444433 335678888874 3354 44556789999987
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC-C--eEEEEEcCcchhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD-R--SFKIWNASNYKCL 175 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-g--~i~iwd~~~~~~~ 175 (357)
.......+. ........++..| .+++..... + .|.--++......
T Consensus 110 g~~~~~l~~------------------------------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 110 GTQRRVLFD------------------------------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp SCSCEEEEC------------------------------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CceEEEEec------------------------------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 654322111 2224567888888 555544322 2 3444455432222
Q ss_pred hhccccccccEEEEEEecCC-eE-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 176 ESVNKAHEDAVNAVVVSDNG-VV-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
... ...-.....+++.+.+ +| .+-...+.|...|+. . ......+.+.. ...+|++. ++.+..+-.
T Consensus 160 ~i~-~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~------g----~~~~~v~~~~~-~P~~lav~-~~~lYwtd~ 226 (263)
T d1npea_ 160 ILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA------Q----PGRRKVLEGLQ-YPFAVTSY-GKNLYYTDW 226 (263)
T ss_dssp EEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT------E----EEEEEEEECCC-SEEEEEEE-TTEEEEEET
T ss_pred eee-eecccccceEEEeecCcEEEEEeCCCCEEEEEECC------C----CCeEEEECCCC-CcEEEEEE-CCEEEEEEC
Confidence 222 2233456789998765 55 444567889888886 1 11111222222 23577776 344444545
Q ss_pred cCCeEEEEecccCCce
Q 038568 254 CDRWIVVWERERDHRM 269 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~ 269 (357)
..+.|...|..+++..
T Consensus 227 ~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 227 KTNSVIAMDLAISKEM 242 (263)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCccc
Confidence 6788888888877643
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.15 Score=40.18 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=82.9
Q ss_pred ceeEEEEecceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeee
Q 038568 31 IISCLAVHNSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
.|..++|+++.|+....+.+..++. ........... ...++..+.++|+.++....++.+.++++..++.......
T Consensus 88 ~v~~vafs~d~l~v~~~~~l~~~~~-~~l~~~~~~~~---~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 163 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVSTRNALYSLDL-EELSEFRTVTS---FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQN 163 (381)
T ss_dssp TEEEEEEETTEEEEEESSEEEEEES-SSTTCEEEEEE---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeeCCEEEEEeCCCEEEEEe-ecccccccccc---ccccccceecCCceeEEEecCCCEEEEEeccCccccccCC
Confidence 4888999977777776557777877 44333333333 5678999999999977788889999999987753322111
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE-EEcCcchhhhhccccccccEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI-WNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~ 187 (357)
... ..-.+.+.+++|++ ..++++..+ ...+ -++.....+..- ......+.
T Consensus 164 v~~-------------------------~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~~~~p-~~~~~~v~ 216 (381)
T d1xipa_ 164 VTS-------------------------FDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSELEEL-PVEEYSPL 216 (381)
T ss_dssp EEE-------------------------EEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHHHHTS-CTTTSEEE
T ss_pred cce-------------------------EEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccccCCC-cCCCccee
Confidence 000 01224567777777 445554322 1221 122222222221 22445788
Q ss_pred EEEEecCCeEEEEe
Q 038568 188 AVVVSDNGVVYTGS 201 (357)
Q Consensus 188 ~~~~~~~~~l~~~~ 201 (357)
+|.|..+..|++..
T Consensus 217 sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 217 SVTILSPQDFLAVF 230 (381)
T ss_dssp EEEESSSSEEEEEE
T ss_pred EEEEecCceEEEEE
Confidence 99998877655443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.41 E-value=0.21 Score=41.89 Aligned_cols=70 Identities=7% Similarity=0.152 Sum_probs=45.1
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceecccc-------CC-CCceEEEEEecCceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-------SS-SGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-------~~-~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+..|+.++.+ .|.-.|. ++++.+-.+.... .. ...-..++...+.++.+..|+.|.-.|..+++......
T Consensus 66 ~g~vyv~t~~~~v~AlDa-~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEeC-CCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 4566666677 8888898 8888776653210 00 11112344445668888889999999988887665444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.22 Score=39.17 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=82.2
Q ss_pred cceeEEEEe--cceEEEeeCCceEEEeccCCccc-------cceeccccCCCCceEEEEEecCceEEeecCCeEEEEecC
Q 038568 30 MIISCLAVH--NSLLYAASLNEINVFDLISDYSH-------VDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT 100 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~ 100 (357)
....-++.+ ..+++.|+.+.++|-.+ +.-+. -..+.... .-..|..++|+.+.|+.. .++.+..++..
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t-~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~d~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGEL-QLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHGDQVLVS-TRNALYSLDLE 113 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEH-HHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEH-HHHHHHhhccCCCCcceecc-CCCCeEEEEeeCCEEEEE-eCCCEEEEEee
Confidence 346677777 56777777776777765 22100 00111000 123688999988775554 44667778776
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcc-
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN- 179 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 179 (357)
.-....... .-..++.++.+.|..++....+|.+.++++..++......
T Consensus 114 ~l~~~~~~~------------------------------~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 163 (381)
T d1xipa_ 114 ELSEFRTVT------------------------------SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQN 163 (381)
T ss_dssp STTCEEEEE------------------------------ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred ccccccccc------------------------------cccccccceecCCceeEEEecCCCEEEEEeccCccccccCC
Confidence 544332222 2235678888888888888889999999998765322110
Q ss_pred ---ccccccEEEEEEecCCe-EEEE
Q 038568 180 ---KAHEDAVNAVVVSDNGV-VYTG 200 (357)
Q Consensus 180 ---~~~~~~v~~~~~~~~~~-l~~~ 200 (357)
..-...+.+++|++.++ ++++
T Consensus 164 v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 164 VTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEE
T ss_pred cceEEecCCceEEEEeCCcEEEEEe
Confidence 11234566677776663 5444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.01 E-value=0.19 Score=37.45 Aligned_cols=88 Identities=5% Similarity=0.002 Sum_probs=50.9
Q ss_pred EecC--c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C
Q 038568 80 FHIT--K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G 153 (357)
Q Consensus 80 ~~~~--~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 153 (357)
.+|+ + ++-. .++.|.+.|+.+++.. .+. .+...+...+|+| +
T Consensus 6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~-~Lt------------------------------~~~~~~~~p~~SPDG~ 53 (281)
T d1k32a2 6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTR-KIV------------------------------SNLGVINNARFFPDGR 53 (281)
T ss_dssp EEEEEETTEEEEE-ETTEEEEEETTTCCEE-EEE------------------------------CSSSEEEEEEECTTSS
T ss_pred cCCCCCCCEEEEE-eCCcEEEEECCCCCEE-EEe------------------------------cCCCcccCEEECCCCC
Confidence 3455 4 4433 3467888898877643 232 3456678889999 6
Q ss_pred eEEEEe-cCC-----eEEEEEcCcchhhhhcc-----ccccccEEEEEEecCCe-EEE
Q 038568 154 LMYSVS-WDR-----SFKIWNASNYKCLESVN-----KAHEDAVNAVVVSDNGV-VYT 199 (357)
Q Consensus 154 ~l~~~~-~dg-----~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-l~~ 199 (357)
.|+-.. .++ .|.+++..+++...... ...........|+|++. ++.
T Consensus 54 ~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 54 KIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp EEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence 666443 222 47777777665443210 11123446788999995 444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.96 E-value=0.37 Score=40.42 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=38.0
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEec
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGS 296 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~ 296 (357)
.+.++++|+.||.++.+|.++++.+-......+..........+++ ||++..
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 4668889999999999999999987666655555554555567776 555433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.68 E-value=0.35 Score=38.06 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=58.3
Q ss_pred EEEEec--CeEEEEecC-CeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCC------CeEEEEEcccccc
Q 038568 147 DLVVKQ--GLMYSVSWD-RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSAD------GRIRVWERSVVDH 216 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~ 216 (357)
..++.+ .+++.|+.+ ..+.+||..+..-...-.......-...+..+|++ ++.|+.+ ..+.+||....
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~-- 157 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-- 157 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--
T ss_pred EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC--
Confidence 344555 566666544 57999998875432211111222233556667875 5555532 36888998721
Q ss_pred ccccccceeeeeEe-------ecccc-----ceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 217 NKERKSRHMLVTTL-------VKHRS-----TVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 217 ~~~~~~~~~~~~~~-------~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
....+... ..+.. .-..+...++++.+..+..++.+.+++..+..
T Consensus 158 ------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 214 (387)
T d1k3ia3 158 ------TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 214 (387)
T ss_dssp ------EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred ------ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence 11111100 00000 01112334567777777777778888776553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.52 E-value=0.38 Score=37.37 Aligned_cols=188 Identities=12% Similarity=0.137 Sum_probs=106.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec----CC--e-EEEEeC--C--CeEEEEEccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD----NG--V-VYTGSA--D--GRIRVWERSVVDHNKERK 221 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~--~-l~~~~~--d--~~i~i~d~~~~~~~~~~~ 221 (357)
.+++.....+-|.+||+. |+.+..+. .+.++.+..-. ++ . +++++. + ..|.+|.+....
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~------ 110 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN------ 110 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT------
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc------
Confidence 566666677779999985 77777662 34555554432 22 2 555542 2 367788775111
Q ss_pred cceeeeeEee-------ccccceeEEEE--ecC-CC-EEEEEecCCeEEEEecccCCc----eeeeeeccCCccceEEEe
Q 038568 222 SRHMLVTTLV-------KHRSTVNALAL--NGD-GS-LLFSGGCDRWIVVWERERDHR----MVFAEALWGHTGALLCLI 286 (357)
Q Consensus 222 ~~~~~~~~~~-------~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~ 286 (357)
..+..+. .....++.+++ ++. +. ++++...+|.+..|.+..... ....+.+. -...+-.+.
T Consensus 111 ---~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCV 186 (353)
T d1h6la_ 111 ---GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMA 186 (353)
T ss_dssp ---TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEE
T ss_pred ---cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEE
Confidence 0111111 11234667776 553 44 567777899999998753221 12233332 334566677
Q ss_pred ecCc--eEEEecCCCeEEEeeCCC--CcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASGSADRTVRIWQRGK--ENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++.+ .|..+-++.-|+.++.+. ......+....+ ....+-.|+.-.... ..+.+|+|.-.|++..+||
T Consensus 187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~---~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD---GKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG---GCEEEEEEEGGGTEEEEEE
T ss_pred EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC---CCeEEEEEcCCCCeEEEEe
Confidence 7665 888888877676666542 222233333222 356788888765432 1345677776788888875
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.32 E-value=0.48 Score=39.80 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=37.3
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEe
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASG 295 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~ 295 (357)
-.+.++++|+.||.++.+|.++++.+.....-.+..........+++ |++..
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 36778889999999999999999987666655444444444456776 54443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.69 E-value=1 Score=37.90 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=45.8
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceE-EEEEecCceEEeec------CCeEEEEecCCccceeeeee
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVK-SITFHITKIFTAHQ------DCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~-~l~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~ 110 (357)
.+++.++.| .|.-.|. ++++.+..+.....+. ..++ .-.+..+.++.+.. .|.|+-+|..+++..-....
T Consensus 122 ~~v~~~t~dg~l~Alda-~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred eEEEEEeCCCCeEeecc-ccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 367888888 8888899 8888887765311111 1111 11223344666543 48899999999998766665
Q ss_pred cC
Q 038568 111 LP 112 (357)
Q Consensus 111 ~~ 112 (357)
.+
T Consensus 201 ~~ 202 (596)
T d1w6sa_ 201 TG 202 (596)
T ss_dssp SS
T ss_pred cC
Confidence 44
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=94.31 E-value=0.7 Score=34.37 Aligned_cols=240 Identities=11% Similarity=0.079 Sum_probs=115.3
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeE
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYV 128 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (357)
+|+.|--.+.......... ....|..|+--....+.-. ||.|..|-.+...++-...
T Consensus 5 sv~~WG~~~~~~~~~~~~~---~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~------------------- 61 (273)
T d1jtdb_ 5 SVVAWGGNNDWGEATVPAE---AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA------------------- 61 (273)
T ss_dssp EEEEESSCCSSSTTCCCGG---GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-------------------
T ss_pred EEEEECCCCCCCceecccc---CCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee-------------------
Confidence 6788865222222222222 4556888877555433334 8999999766544322110
Q ss_pred EEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEE
Q 038568 129 TVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRV 208 (357)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i 208 (357)
.....+..+..-....+.- .||.+..|.....-..... ......+..+.......++ -.|+.+..
T Consensus 62 -----------~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~-~~~~~~~~~i~~~~~~~~~--~~dg~v~~ 126 (273)
T d1jtdb_ 62 -----------ATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAWASYA--LKDGKVIA 126 (273)
T ss_dssp -----------GGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC-GGGGSSCCEEEEETTEEEE--EETTEEEE
T ss_pred -----------cccccceEEecCCCceeee-eeeeeeccCCCcceeeccc-cccccceeEEeeecccccc--ccccccee
Confidence 1223455555544322222 4899999986543222211 1223334445443332222 25889998
Q ss_pred EEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
|.-..... .. ........|..++- .... +....++.++.|-.....+.. ........|..++..
T Consensus 127 ~g~~~~~~------~~----~~~~~~~~v~~~~~--~~~~-~~~~~~g~~~~~G~~~~g~~~---~~~~~~~~v~~Is~G 190 (273)
T d1jtdb_ 127 WGDDSDGQ------TT----VPAEAQSGVTALDG--GVYT-ALAVKNGGVIAWGDNYFGQTT---VPAEAQSGVDDVAGG 190 (273)
T ss_dssp EECCTTST------TS----CCGGGGSSEEEEEE--CSSE-EEEEETTEEEEEECCTTSTTS---CCGGGSSSEEEEEEC
T ss_pred cccCCCCc------ee----eeccCCceEEEEec--ccee-eeeecccceeEeecccCCccc---ccccccCCccceecc
Confidence 87441110 00 00111223333332 2222 333457888888765443221 111234457777765
Q ss_pred CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 289 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
....+.-. ||.|+-|=.....+ +.........|..|+-.... .++. .||.|..|
T Consensus 191 ~~h~~~l~-dG~v~~WG~n~~Gq---l~~~~~~~~~v~~I~~G~~~--------~~~l--~~g~v~~W 244 (273)
T d1jtdb_ 191 IFHSLALK-DGKVIAWGDNRYKQ---TTVPTEALSGVSAIASGEWY--------SLAL--KNGKVIAW 244 (273)
T ss_dssp SSEEEEEE-TTEEEEEECCTTST---TCCCGGGGSSCCEEEECSSC--------EEEE--ETTEEEEE
T ss_pred ceeeEEEe-cCcEEEcCCCCCCc---cCCCccCCCCcEEEEeCcce--------EEEE--ECCEEEEE
Confidence 55333323 79999996543211 11111122346666544332 3333 37888887
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=1.2 Score=33.00 Aligned_cols=176 Identities=12% Similarity=-0.033 Sum_probs=93.8
Q ss_pred ccEEEEEEec--CeEEEEe-cCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEcccc
Q 038568 143 DAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVV 214 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~ 214 (357)
..+.++.|+. +.++-.. .++.|.-.++..... ...+.......+..+++.+.+ . ..+-...+.|.+.++.
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-- 107 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-- 107 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC--
Confidence 3566888887 5555554 456677666643221 111112223456678887644 3 4555667889999986
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe--cCCeEEEEecccCCceeeeeeccCCccceEEEeec--Cc
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG--CDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GD 290 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 290 (357)
.................++++|...+|.-.. ..+.|.-.++.......... ..-.....++.+ .+
T Consensus 108 --------g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~---~~~~~p~gl~iD~~~~ 176 (266)
T d1ijqa1 108 --------GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITLDLLSG 176 (266)
T ss_dssp --------SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---SSCSCEEEEEEETTTT
T ss_pred --------CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc---cccceeeEEEeecccc
Confidence 1112222333445678999999665555443 34567777776443221211 122334556555 34
Q ss_pred -eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 291 -LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+..+-...+.|...++..... ..+...........+|++..
T Consensus 177 ~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~ 218 (266)
T d1ijqa1 177 RLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE 218 (266)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET
T ss_pred EEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC
Confidence 444556678899888865432 22322232233455677663
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.29 E-value=1.7 Score=30.70 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=43.3
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccc-cceeeeeEeeccccceeEEEEe-cCCCEEEEEec-CCeEEE
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERK-SRHMLVTTLVKHRSTVNALALN-GDGSLLFSGGC-DRWIVV 260 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~v 260 (357)
-.|.+++.......++|+......+|-++.++..+-.. .....+..+ ....|..+.+- ++.+-++++.- .|.++|
T Consensus 104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI--~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec--cCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 46777777666678889888888888876221110000 001111111 12334444433 33334555555 777888
Q ss_pred EecccCC
Q 038568 261 WERERDH 267 (357)
Q Consensus 261 wd~~~~~ 267 (357)
++...+.
T Consensus 182 ~tpkeGS 188 (313)
T d2hu7a1 182 FDSGEGS 188 (313)
T ss_dssp ECCSSEE
T ss_pred ecCCCCc
Confidence 8776553
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.26 E-value=4.4 Score=33.80 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=45.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccC-----CCCce-EEEEEecCceEEeecCCeEEEEecCCccce
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLS-----SSGSV-KSITFHITKIFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~-----~~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~ 105 (357)
+..|++++.+ .|.-.|. .+++.+-.+....+ ....+ ..+++..+.++.++.|+.+.-.|..+++..
T Consensus 68 ~g~vy~~t~~~~v~AlDa-~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~ 140 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEE
T ss_pred CCEEEEeCCCCeEEEEeC-CCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEeccccccee
Confidence 5677777877 9999999 88888877642110 00111 235555666888888998888888888754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.06 E-value=3.2 Score=31.96 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=72.5
Q ss_pred cEEEEEE--ecC-C--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 185 AVNAVVV--SDN-G--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 185 ~v~~~~~--~~~-~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.+..+|+ ++. + ++++...+|.+..|.+.... ........++.+. ....+..+.+.+....|+.+-++.-|.
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~---~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw 204 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADK---NGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIW 204 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT---TSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCC---CCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceE
Confidence 3556666 554 4 46777889999999875211 1112234455554 356788999999988999998887776
Q ss_pred EEecccC--CceeeeeeccC--CccceEEEe--ec--Cc--eEEEecCCCeEEEeeCCCC
Q 038568 260 VWERERD--HRMVFAEALWG--HTGALLCLI--NV--GD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 260 vwd~~~~--~~~~~~~~~~~--~~~~v~~~~--~~--~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
.++.... .....+....+ ....+-.++ .. ++ +|+|.-.+++..+||....
T Consensus 205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 6665422 11112212111 233444443 22 23 5566666899999999875
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.78 E-value=3.9 Score=32.50 Aligned_cols=102 Identities=12% Similarity=0.165 Sum_probs=57.4
Q ss_pred ccEEEEEEec--CeEE-EEecCC----eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeC------------
Q 038568 143 DAVSDLVVKQ--GLMY-SVSWDR----SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSA------------ 202 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~------------ 202 (357)
-.+..++++| ++++ +-+.+| .|+++|+.+++.+... ........++|.+++. |+-...
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--cccccccceEEcCCCCEEEEEEeccccCccccccc
Confidence 3445566777 4444 444444 6999999999866432 1112235688999884 433222
Q ss_pred ----CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 203 ----DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 203 ----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
...|..+.+. +.......+.........+..+..++++++++..
T Consensus 203 ~~~~~~~v~~h~lg------t~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 203 STNLHQKLYYHVLG------TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCCEEEEEETT------SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ccCCcceEEEEECC------CCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 2357777765 2222223333322233446677788999987654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.61 E-value=7.7 Score=32.22 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=37.7
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEE
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLAS 294 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~ 294 (357)
+..+.++++|+.||.++.+|.++++.+-....-.+..........+++ |++.
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 346778889999999999999999987666654444444455566776 5543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.95 E-value=7.1 Score=31.18 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=38.5
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec-----cCCccceEEEeecCc
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL-----WGHTGALLCLINVGD 290 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 290 (357)
-...++|+|.|++++|++--..|.|++++..++......... ..-....+.++++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 345679999999998887656799999998766543222211 112345678888875
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=5.7 Score=29.00 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCCEEEEEecC-----CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC-----eEEEeeCCCCcceee
Q 038568 245 DGSLLFSGGCD-----RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR-----TVRIWQRGKENCYRC 314 (357)
Q Consensus 245 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~ 314 (357)
++++++.|+.+ .....+|..+.+.. .......-.....++...+++++.|+.++ .+.+||+.+. .+..
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~-~W~~ 272 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD-TWSE 272 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT-EEEE
T ss_pred eeeEEEecCccccccccceeeeeecceeee-cccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC-EEEE
Confidence 45566665544 24667777654422 11111111222234445666777777554 4788999876 3555
Q ss_pred eeee
Q 038568 315 MAFL 318 (357)
Q Consensus 315 ~~~~ 318 (357)
+..+
T Consensus 273 ~~~~ 276 (288)
T d1zgka1 273 VTRM 276 (288)
T ss_dssp EEEC
T ss_pred CCCC
Confidence 5443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.37 E-value=8 Score=28.23 Aligned_cols=222 Identities=11% Similarity=0.082 Sum_probs=106.6
Q ss_pred ccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 29 HMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 29 ~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
...|..|+--....+.-. | .|..|-. +...++-.-.. ....|..++--....+. -.|+.+..|..........
T Consensus 25 ~~~i~~va~G~~h~~al~-dG~v~~wG~-N~~GQlG~~~~---~~~~v~~v~~G~~~~~a-l~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 25 QSGVDAIAGGYFHGLALK-GGKVLGWGA-NLNGQLTMPAA---TQSGVDAIAAGNYHSLA-LKDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp SSSEEEEEECSSEEEEEE-TTEEEEEEC-CTTSTTSCCGG---GGSCCCEEEECSSEEEE-EETTEEEEEECCTTSTTCC
T ss_pred CCCcEEEEccCCEEEEEE-CCEEEEEeC-CCCCceeeeec---ccccceEEecCCCceee-eeeeeeeccCCCcceeecc
Confidence 345777766633333334 7 9999987 44333322222 34455565543333222 2489999998644322111
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.. .....+..+.......+.. .|+.+..|........... ......|.
T Consensus 99 ~~------------------------------~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~-~~~~~~v~ 146 (273)
T d1jtdb_ 99 PA------------------------------EARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVP-AEAQSGVT 146 (273)
T ss_dssp CG------------------------------GGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCC-GGGGSSEE
T ss_pred cc------------------------------ccccceeEEeeeccccccc-ccccceecccCCCCceeee-ccCCceEE
Confidence 00 1122344444444333322 4899999975443222221 23334455
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.++-. ...+....++.++.|-...... ..........|..++.... ..+.- .||.|+.|=.....
T Consensus 147 ~~~~~--~~~~~~~~~g~~~~~G~~~~g~----------~~~~~~~~~~v~~Is~G~~--h~~~l-~dG~v~~WG~n~~G 211 (273)
T d1jtdb_ 147 ALDGG--VYTALAVKNGGVIAWGDNYFGQ----------TTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYK 211 (273)
T ss_dssp EEEEC--SSEEEEEETTEEEEEECCTTST----------TSCCGGGSSSEEEEEECSS--EEEEE-ETTEEEEEECCTTS
T ss_pred EEecc--ceeeeeecccceeEeecccCCc----------ccccccccCCccceeccce--eeEEE-ecCcEEEcCCCCCC
Confidence 54432 2223334578888887542111 0111112345666655422 22222 38999999654333
Q ss_pred ceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCC
Q 038568 268 RMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
++... ......|..++-...+.+.- .||.|..|-..
T Consensus 212 ql~~~---~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 212 QTTVP---TEALSGVSAIASGEWYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp TTCCC---GGGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred ccCCC---ccCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence 22111 11123355555444433322 48999999644
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=80.74 E-value=9.9 Score=28.93 Aligned_cols=161 Identities=10% Similarity=0.115 Sum_probs=81.2
Q ss_pred CCeEEEEEcCcchhhh-hcc------ccccccEEEEEE--ecCC--eEEEEe---CCCeEEEEEccccccccccccceee
Q 038568 161 DRSFKIWNASNYKCLE-SVN------KAHEDAVNAVVV--SDNG--VVYTGS---ADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~-~~~------~~~~~~v~~~~~--~~~~--~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
.|.|.++|+++.+... .+. ....-....+.. .+++ +|++.. ...+|.+|++. ........
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~------~~~~~l~~ 140 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQ------EEEKSLLH 140 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEE------TTTTEEEE
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEe------CCCCeEEE
Confidence 4889999987643221 110 000112233333 3455 355553 35678888876 22212222
Q ss_pred eeEeec-cccceeEEEEecCCCEEEEEec---C------------CeEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 227 VTTLVK-HRSTVNALALNGDGSLLFSGGC---D------------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 227 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
+..... .....+.+++..++.+++|-.. + +...+|..+.+....... .-.....++++++
T Consensus 141 ~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~----~l~~pNGI~~s~d 216 (340)
T d1v04a_ 141 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE----GFDFANGINISPD 216 (340)
T ss_dssp EEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE----EESSEEEEEECTT
T ss_pred EeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC----CCCccceeEECCC
Confidence 222221 2245788998888888887321 0 223344333333211111 1233466677655
Q ss_pred ---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 291 ---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 291 ---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
++++-...+.|++|++............. -....-.+.+.+
T Consensus 217 ~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~ 260 (340)
T d1v04a_ 217 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDP 260 (340)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECT
T ss_pred CCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEec
Confidence 55666778899999987654333333322 223345566654
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