Citrus Sinensis ID: 038586
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.254 | 0.081 | 0.308 | 0.0003 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function desciption |
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Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 21 IIIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLR 80
I++R ++EE LL F+ D G L+SW + D N C W G+ C +H + +
Sbjct: 19 ILVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIAC----THLRTVTSV 72
Query: 81 SSNDENARRKILKGTISSALLLCLNCMIYDIWTL-VTINFGGIPVPE 126
N N L GT+S L C ++ + L V+ NF P+P+
Sbjct: 73 DLNGMN-----LSGTLSP-----LICKLHGLRKLNVSTNFISGPIPQ 109
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| 225464712 | 1021 | PREDICTED: receptor-like protein 12-like | 0.342 | 0.118 | 0.421 | 2e-18 | |
| 296090228 | 896 | unnamed protein product [Vitis vinifera] | 0.390 | 0.154 | 0.427 | 5e-17 | |
| 359488591 | 981 | PREDICTED: probable leucine-rich repeat | 0.390 | 0.140 | 0.427 | 6e-17 | |
| 224105891 | 1036 | predicted protein [Populus trichocarpa] | 0.300 | 0.102 | 0.454 | 2e-16 | |
| 224116866 | 994 | predicted protein [Populus trichocarpa] | 0.300 | 0.106 | 0.454 | 4e-16 | |
| 224078762 | 529 | predicted protein [Populus trichocarpa] | 0.294 | 0.196 | 0.454 | 6e-16 | |
| 224116878 | 627 | predicted protein [Populus trichocarpa] | 0.294 | 0.165 | 0.403 | 6e-16 | |
| 224116870 | 1084 | predicted protein [Populus trichocarpa] | 0.294 | 0.095 | 0.403 | 1e-15 | |
| 147855809 | 1107 | hypothetical protein VITISV_029207 [Viti | 0.308 | 0.098 | 0.442 | 2e-15 | |
| 224097947 | 1086 | predicted protein [Populus trichocarpa] | 0.294 | 0.095 | 0.454 | 2e-15 |
| >gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 84/133 (63%), Gaps = 12/133 (9%)
Query: 4 FSVLLFQLEPRIAESNSIIIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWR 63
F++LL +P + C+++E++ALL F+Q VD++G LSSWG E+D+R+CCKWR
Sbjct: 37 FTLLLLCSKPGLGSG------CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWR 90
Query: 64 GVCCNNTTSHFKVLNLRS-SNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGG 121
GV C+N TSH +L+L + D + + L+G ISS+LL + D+ ++N F G
Sbjct: 91 GVQCSNRTSHVIMLDLHALPTDTVHKYQSLRGRISSSLLELQHLNHLDL----SLNDFQG 146
Query: 122 IPVPEFVGSLSKL 134
VPEF+G SKL
Sbjct: 147 SYVPEFIGLFSKL 159
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090228|emb|CBI40047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CID EK ALL F+Q D G LSSW ED CCKWRGV CNN + H L LR D
Sbjct: 82 CIDTEKVALLKFKQGLTDPSGRLSSWVGED----CCKWRGVVCNNRSGHVIKLTLRYL-D 136
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSK---LSLNTVDH 141
+ L G IS AL L+ + L NFGGIP+PEF+GSL K L+L+
Sbjct: 137 SDGTEGELGGKISPAL---LDLKYLNYLDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASF 193
Query: 142 QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQN 180
G P P L G ++SL + K+ DE SQ+
Sbjct: 194 GG------PIPPQL----GNLSSLHYLDLKEYFDESSQD 222
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CID EK ALL F+Q D G LSSW ED CCKWRGV CNN + H L LR D
Sbjct: 39 CIDTEKVALLKFKQGLTDPSGRLSSWVGED----CCKWRGVVCNNRSGHVIKLTLRYL-D 93
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSK---LSLNTVDH 141
+ L G IS AL L+ + L NFGGIP+PEF+GSL K L+L+
Sbjct: 94 SDGTEGELGGKISPAL---LDLKYLNYLDLSMNNFGGIPIPEFIGSLEKLRYLNLSGASF 150
Query: 142 QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQN 180
G P P L G ++SL + K+ DE SQ+
Sbjct: 151 GG------PIPPQL----GNLSSLHYLDLKEYFDESSQD 179
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D++G LS+WG E++KR+CCKWRGV C+N T H L+L N
Sbjct: 40 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHREN- 98
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL 134
N L G IS++ LL L + Y L FGG P F+GSL KL
Sbjct: 99 YNGYYYQLSGNISNS-LLELQHLSY--LNLNGSRFGGSSFPYFIGSLKKL 145
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 4/110 (3%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D++G LS+WG E++KR+CCKWRGV C+N T H L+L N
Sbjct: 40 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHREN- 98
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL 134
N L G IS++ LL L + Y L FGG P F+GSL KL
Sbjct: 99 YNGYYYQLSGNISNS-LLELQHLSY--LNLNGSRFGGSSFPYFIGSLKKL 145
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078762|ref|XP_002335745.1| predicted protein [Populus trichocarpa] gi|222834731|gb|EEE73194.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D++G LS+WG E++KR+CCKWRGV CNN T H L+L +
Sbjct: 40 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVRCNNRTGHVTHLDL---HQ 96
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL 134
EN L G IS++ LL L + Y L +F G P F+GSL KL
Sbjct: 97 ENYINGYLTGKISNS-LLELQHLSY--LNLNRNSFEGSSFPYFIGSLKKL 143
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116878|ref|XP_002331836.1| predicted protein [Populus trichocarpa] gi|222875074|gb|EEF12205.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 20/124 (16%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D +G LS+WG E++KR+CCKWRGV CNN T H L+L N+
Sbjct: 40 CIERERQALLKFKEDLIDNFGLLSTWGSEEEKRDCCKWRGVGCNNRTGHVTHLDLHRENE 99
Query: 85 ENARRKILKGTISSALL-------LCLNCMIYDIWTLVT-------INFGGIPVPEFVGS 130
L G IS++LL + L + +LV +F GIP P F+GS
Sbjct: 100 ------YLAGKISNSLLELQHLSYMSLRGSYFRYPSLVNPGSDFQGSSFEGIPFPYFIGS 153
Query: 131 LSKL 134
L L
Sbjct: 154 LESL 157
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116870|ref|XP_002331834.1| predicted protein [Populus trichocarpa] gi|222875072|gb|EEF12203.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 20/124 (16%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D +G LS+WG E++KR+CCKWRGV CNN T H L+L N+
Sbjct: 40 CIERERQALLKFKEDLIDNFGLLSTWGSEEEKRDCCKWRGVGCNNRTGHVTHLDLHRENE 99
Query: 85 ENARRKILKGTISSALL-------LCLNCMIYDIWTLVT-------INFGGIPVPEFVGS 130
L G IS++LL + L + +LV +F GIP P F+GS
Sbjct: 100 ------YLAGKISNSLLELQHLSYMSLRGSYFRYPSLVNPGSDFQGSSFEGIPFPYFIGS 153
Query: 131 LSKL 134
L L
Sbjct: 154 LESL 157
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Query: 23 IRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSS 82
+ CI+ E++ALL F++ VD+YG LS WG E DKR+CC+WRGV CNN + H +L L +
Sbjct: 31 VGCIEGERQALLKFKRGLVDDYGLLSLWGDEQDKRDCCRWRGVRCNNRSGHVIMLRLPAP 90
Query: 83 N-DENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL 134
DE + L+G IS +LL + D L +F G +P F+GSLSK+
Sbjct: 91 PIDEYGNYQSLRGEISPSLLELEHLNHLD---LSYNDFEGKQIPSFLGSLSKM 140
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097947|ref|XP_002334582.1| predicted protein [Populus trichocarpa] gi|222873265|gb|EEF10396.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 6/110 (5%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
CI+ E++ALL F++ +D++G LS+WG E++KR+CCKWRGV CNN T H L+L
Sbjct: 18 CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVRCNNRTGHVTHLDLH---Q 74
Query: 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL 134
EN L G IS++ LL L + Y L +F G P F+GSL KL
Sbjct: 75 ENYINGYLTGKISNS-LLELQHLSY--LNLNRNSFEGSSFPYFIGSLKKL 121
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| TAIR|locus:2044767 | 905 | AT2G34930 "AT2G34930" [Arabido | 0.433 | 0.169 | 0.315 | 7.3e-09 | |
| TAIR|locus:2154463 | 589 | AT5G23400 [Arabidopsis thalian | 0.365 | 0.219 | 0.312 | 0.00068 |
| TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 53/168 (31%), Positives = 83/168 (49%)
Query: 4 FSVLLFQLEPRIAESNSIIIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWR 63
F +L+ L+ + ++ +CI E++ALLTF + D L SW D CC W
Sbjct: 13 FLILILLLK-NLNYGSAASPKCISTERQALLTFRAALTDLSSRLFSWSGPD----CCNWP 67
Query: 64 GVCCNNTTSHFKVLNLRS-SND---ENARRKILKGTISSALLLCLNCMIYDIWTLVTINF 119
GV C+ TSH ++LR+ S D + +R L+G I +L L + Y L + +F
Sbjct: 68 GVLCDARTSHVVKIDLRNPSQDVRSDEYKRGSLRGKIHPSLTQ-LKFLSY--LDLSSNDF 124
Query: 120 GGIPVPEFVG---SLSKLSLNTVDHQGEIIHSVPEYPTLFDVEGYMAS 164
+ +PEF+G SL L+L++ GEI S+ L ++ Y S
Sbjct: 125 NELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAES 172
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| TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 45/144 (31%), Positives = 68/144 (47%)
Query: 18 SNSIIIRCIDEEKEALLTFEQSPV-DEYGALSSWGREDDKRNCCK--WRGVCCNNTTSHF 74
S+S + C +++ LL F+ S + D G L SW +D CC W GV CN T
Sbjct: 24 SSSQQVICSSQDRATLLGFKSSIIEDTTGVLDSWVGKD----CCNGDWEGVQCNPATGKV 79
Query: 75 KVLNLRSSNDENARRKILKGTISSAL--LLCLNCMIYDIWTLVTINFGGIPVP-EFVGSL 131
L L+S+ +E +KGT+S +L L L ++ +T G IP + SL
Sbjct: 80 TGLVLQSAVNEPTL--YMKGTLSPSLGNLRSLELLLITGNKFIT---GSIPNSFSNLTSL 134
Query: 132 SKLSLNTVDHQGEIIHSVPEYPTL 155
+L L+ QG ++ S+ P L
Sbjct: 135 RQLILDDNSLQGNVLSSLGHLPLL 158
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 353 339 0.00094 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 618 (66 KB)
Total size of DFA: 242 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.08u 0.11s 29.19t Elapsed: 00:00:01
Total cpu time: 29.08u 0.11s 29.19t Elapsed: 00:00:01
Start: Sat May 11 13:34:36 2013 End: Sat May 11 13:34:37 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 353 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-06 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 3e-05 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 35/143 (24%)
Query: 1 MALFSVLLFQLEPRIAESNSIIIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCC 60
+F + L + + EE E LL+F+ S D LS+W D C
Sbjct: 11 YLIFMLFFLFLNFSMLHA---------EELELLLSFKSSINDPLKYLSNWNSSAD---VC 58
Query: 61 KWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINF- 119
W+G+ CNN +S ++L N + G ISSA I+ + + TIN
Sbjct: 59 LWQGITCNN-SSRVVSIDLSGKN--------ISGKISSA--------IFRLPYIQTINLS 101
Query: 120 -----GGIPVPEFVGSLSKLSLN 137
G IP F S S LN
Sbjct: 102 NNQLSGPIPDDIFTTSSSLRYLN 124
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Length = 968 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-05
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 26 IDEEKEALLTFEQS-PVDEYGALSSWGREDDKRNCCKWRGVCCN 68
++++++ALL F+ S D GALSSW + C W GV C+
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42
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Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.69 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.65 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.63 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.6 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.56 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.53 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.52 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.52 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.46 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.43 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.41 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.38 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.37 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.37 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.29 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.27 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.13 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.06 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.05 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.99 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.96 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.94 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.67 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.64 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.61 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.56 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.51 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.5 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.32 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.32 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.27 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.17 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.1 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.09 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.96 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.87 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.71 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.58 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.54 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.46 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.42 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.28 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.27 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.13 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.01 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.8 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.6 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.54 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.45 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.29 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.46 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.39 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.24 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.1 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.89 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.68 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.29 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.15 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.69 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 92.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 91.69 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.19 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.19 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 89.71 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 89.3 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 85.02 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 84.81 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 82.91 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=268.44 Aligned_cols=275 Identities=21% Similarity=0.274 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhh
Q 038586 26 IDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCL 104 (353)
Q Consensus 26 ~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~ 104 (353)
+++|+.||++||+++.+|...+.+|. +.| ||.|.||+|++ .++|+.|+|++ ++++|.+|+.+..+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~----~c~w~gv~c~~-~~~v~~L~L~~--------~~i~~~~~~~~~~l- 92 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSAD----VCLWQGITCNN-SSRVVSIDLSG--------KNISGKISSAIFRL- 92 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCC----CCcCcceecCC-CCcEEEEEecC--------CCccccCChHHhCC-
Confidence 66899999999999988877788994 455 99999999975 46999999999 99999999999999
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQN 180 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~ 180 (353)
++| ++|+|++|++++. +|..+. .+++|++|+|++ .+.+|. +.+++|++|++++|.+.+.+|.. +
T Consensus 93 ~~L--~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~-------~ 160 (968)
T PLN00113 93 PYI--QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND-------I 160 (968)
T ss_pred CCC--CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH-------H
Confidence 999 9999999999987 888754 899999999998 666775 56889999999999998877765 5
Q ss_pred CCCCccccceeccCCcCCC-CCCC--CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchh
Q 038586 181 GQQGAEAEAVCIQHNQAND-IPCS--SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDA 252 (353)
Q Consensus 181 ~~l~~~l~~l~l~~N~l~~-i~~~--~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~ 252 (353)
+.+.. ++++++++|++.. +|.. ....++ ...+.+.+|..++++++|++|++++|++++.+| ..++
T Consensus 161 ~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~-- 233 (968)
T PLN00113 161 GSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP----YEIG-- 233 (968)
T ss_pred hcCCC-CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC----hhHh--
Confidence 55555 6667777665542 3321 122222 225667789999999999999999999998888 8888
Q ss_pred hhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCC----Cc---c
Q 038586 253 AIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEP----RD---E 320 (353)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~----~~---~ 320 (353)
++++|++|++++ +.+|..+..+++|++|++++|.+ +.+|. .+..+++|+.|+...+. .+ .
T Consensus 234 ------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 234 ------GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred ------cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--hHhhccCcCEEECcCCeeccCCChhHc
Confidence 899999999987 67888999999999999999999 88998 88888899888764432 11 2
Q ss_pred ccccccccc--ccccccCCChHH
Q 038586 321 ECGKLQAVA--WEEEMGPLPVEF 341 (353)
Q Consensus 321 ~c~~l~~~~--~~~~~~~lp~~~ 341 (353)
.+.+++.+. .+.+.|.+|..+
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhH
Confidence 333444443 355667777554
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=208.31 Aligned_cols=226 Identities=17% Similarity=0.165 Sum_probs=142.6
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+.|.+|..+..+ ++| ++|++++|.+.+. +|..++++++|++|+|++ .+.+|..++++++|++|++++|++.
T Consensus 150 n~~~~~~p~~~~~l-~~L--~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 150 NMLSGEIPNDIGSF-SSL--KVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcccccCChHHhcC-CCC--CEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 55555555555555 555 6666665555555 555555555666665555 4455555555556666666655555
Q ss_pred eecCccccccCCCcCCCCccccceeccCCcCCC-CCCC--CCCCc-----cccceeeeCCcchhccCCCCEEEcccCcCc
Q 038586 167 QILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND-IPCS--SNNNV-----QTVEFEGEMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 167 g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~-i~~~--~~~~l-----~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+.+|.. ++.+.. ++++++++|++.. +|.. ....+ ....+.+.+|.++.++++|++|++++|++.
T Consensus 226 ~~~p~~-------l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 226 GEIPYE-------IGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCChh-------HhcCCC-CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 555543 344455 6677777776553 3321 11222 223566777888888888888888888888
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+.+| ..++ ++++|+.|++++ +.+|..+..+++|+.|++++|.+ +.+|. .++.++.|+.|+.
T Consensus 298 ~~~p----~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~L 363 (968)
T PLN00113 298 GEIP----ELVI--------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDL 363 (968)
T ss_pred cCCC----hhHc--------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEEC
Confidence 7777 6777 788888888877 66777888888888888888888 78888 7888888888876
Q ss_pred ccCCC----c---cccccccccc--ccccccCCChHH
Q 038586 314 IAEPR----D---EECGKLQAVA--WEEEMGPLPVEF 341 (353)
Q Consensus 314 ~~~~~----~---~~c~~l~~~~--~~~~~~~lp~~~ 341 (353)
..+.. + +.+..++.+. .+.+.+.+|..+
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 43321 1 1223344333 245566777654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-18 Score=169.46 Aligned_cols=219 Identities=16% Similarity=0.151 Sum_probs=127.0
Q ss_pred cCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC-CCCCCCCEEEccCccc
Q 038586 90 KILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV-PEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l-~~L~~L~~L~Ls~N~l 165 (353)
|++. .-||+.++++ ..| ++||||+|.+.. +|..+..-+++-.|+||+ +..||..+ -+|+.|-+||||+|++
T Consensus 88 N~LKnsGiP~diF~l-~dL--t~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRL-KDL--TILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred cccccCCCCchhccc-ccc--eeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 5552 3477777777 777 888888888777 677777777777777777 77777664 4777777778887777
Q ss_pred ceecCcc-------ccccCCCcC----------CCCccccceeccCCcCC--CCCCCC--CCCccccceee----eCCcc
Q 038586 166 VQILEKD-------QHDEGSQNG----------QQGAEAEAVCIQHNQAN--DIPCSS--NNNVQTVEFEG----EMEHS 220 (353)
Q Consensus 166 ~g~lp~~-------~~L~l~~~~----------~l~~~l~~l~l~~N~l~--~i~~~~--~~~l~~~~l~g----~~p~~ 220 (353)
. .+|.. ++|+|++|. .+++ ++.|.+++.|-+ .+|.+. ..++..+.++. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 6 45433 333333331 1111 223333332211 222211 11222222221 34555
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC--CC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI--DS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l--~~ 295 (353)
+.++.+|+.|+||+|+|+. +. ...+ ...+|+.|+++. ..+|..+..|++|+.|++.+|++ .-
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~----~~~~--------~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LN----MTEG--------EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred HhhhhhhheeccCcCceee-ee----ccHH--------HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC
Confidence 5566666666666666543 22 2334 555666666666 56677777777777777777777 66
Q ss_pred CCcccccccCcccchhcccc------CCCcccccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIA------EPRDEECGKLQAVAW 330 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~------~~~~~~c~~l~~~~~ 330 (353)
||+ .+|++..|+.+-... .-..+.|++++.+..
T Consensus 308 iPS--GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 308 IPS--GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred Ccc--chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcc
Confidence 777 677766666554322 234566777777654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-18 Score=163.78 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=148.1
Q ss_pred cEEEEEcCCCCC---------------ccccccCCcccccHHH-HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcE
Q 038586 73 HFKVLNLRSSND---------------ENARRKILKGTISSAL-LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSL 136 (353)
Q Consensus 73 ~v~~L~L~~~~~---------------~~~~~~~l~g~lp~~l-~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~ 136 (353)
.++.|||++|++ ...+.|++. +||.++ .+| +.| -.||||+|++.. +|+.+..+.+|++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL-tDL--LfLDLS~NrLe~--LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL-TDL--LFLDLSNNRLEM--LPPQIRRLSMLQT 177 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhh-HhH--hhhccccchhhh--cCHHHHHHhhhhh
Confidence 466677777766 445557776 677544 466 777 788888888876 6766666666666
Q ss_pred EeccC----------------------------CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcccc
Q 038586 137 NTVDH----------------------------QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAE 188 (353)
Q Consensus 137 L~Ls~----------------------------~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~ 188 (353)
|+|++ ...+|.++..|.+|+.+|+|.|++. .+|.- ...+.. ++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-------ly~l~~-Lr 248 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-------LYKLRN-LR 248 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH-------Hhhhhh-hh
Confidence 66655 2345666667777777777777765 33322 112222 34
Q ss_pred ceeccCCcCCCCCCCCC-------CCccccceeeeCCcchhccCCCCEEEcccCcCc-ccCCCCCccccchhhhhcccCC
Q 038586 189 AVCIQHNQANDIPCSSN-------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLD-QILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~-------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~-g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.|+|++|+++.+..... .++..++++ .+|+.++++++|+.|.+.+|+++ .-+| ..|| ++
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP----SGIG--------KL 315 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP----SGIG--------KL 315 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc----cchh--------hh
Confidence 44444444444432211 122222565 68899999999999999999875 2378 8899 99
Q ss_pred CccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 261 AVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 261 ~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..|+.+..++ .-+|+.+..|..|+.|.|+.|.+-.+|+ .+.-++.|+.||...+
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe--aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE--AIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechh--hhhhcCCcceeeccCC
Confidence 9999999888 7789999999999999999999999999 8888888988887654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-17 Score=157.24 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=143.5
Q ss_pred cCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l 165 (353)
|+++ ++|. .|.+| ++| +.|||..|+|.-. ---.|.+|.+|+.|.|.. ...+-+ .|..|.++++|+|++|++
T Consensus 207 Nrit-tLp~r~Fk~L-~~L--~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 207 NRIT-TLPQRSFKRL-PKL--ESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred Cccc-ccCHHHhhhc-chh--hhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 5555 4554 33446 666 6666666666542 122344555555554444 222222 245566666777777665
Q ss_pred ce-------ecCccccccCCCcC----------CCCccccceeccCCcCCCCCCCCC--------CCccccceeeeCCcc
Q 038586 166 VQ-------ILEKDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSN--------NNVQTVEFEGEMEHS 220 (353)
Q Consensus 166 ~g-------~lp~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~--------~~l~~~~l~g~~p~~ 220 (353)
+. .+..+++|++|+|. .... +++|+|+.|+++.++.... .++..+++..--...
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhccc-ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 52 23445666666653 3344 7888888888887775432 122333333333445
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEccCCCCCC-
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESEVEIDS- 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~- 295 (353)
|..+++|+.|||++|.+++.+.. ....+. .|++|+.|.+.+ ..||. .|..+.+|++|||.+|.|.+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IED-aa~~f~--------gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIED-AAVAFN--------GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEec-chhhhc--------cchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 67788899999999998887762 112233 799999999988 66774 68889999999999999944
Q ss_pred CCcccccccCcccchhccccCCCccccccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
-|+ .|..+ .|++|-.-.....++|+-.|..+|-
T Consensus 432 q~n--AFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 432 QPN--AFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred ccc--ccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 466 78887 7888777667778899888888883
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=156.35 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=123.7
Q ss_pred cccCcHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc----cccceEecC--CC--CcEEEEEcCCCCCccccccCCc
Q 038586 22 IIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCC----KWRGVCCNN--TT--SHFKVLNLRSSNDENARRKILK 93 (353)
Q Consensus 22 ~~~~~~~e~~aLl~~k~~~~~~~~~~~~W~~~~~~~~~C----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~ 93 (353)
...+.++|..||+++|+.+.++. ..+|.+.. || .|.||.|.. .. .+|+.|+|++ +.+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~----C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~ 431 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDP----CVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLR 431 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc--cCCCCCCC----CCCcccccccceeeccCCCCceEEEEEECCC--------CCcc
Confidence 45677889999999999997653 24796543 32 699999952 22 2599999999 9999
Q ss_pred ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecC
Q 038586 94 GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 94 g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
|.+|+++..+ ++| ++|+|++|.++|. +|..++.+++|+.|+|++ .+.+|..++++++|++|+|++|+++|.+|
T Consensus 432 g~ip~~i~~L-~~L--~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 432 GFIPNDISKL-RHL--QSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred ccCCHHHhCC-CCC--CEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 9999999999 999 9999999999998 999999999999999999 78999999999999999999999999999
Q ss_pred ccccccCCCcCCCCccccceeccCC
Q 038586 171 KDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 171 ~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
.. ++.....+..+++.+|
T Consensus 508 ~~-------l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 508 AA-------LGGRLLHRASFNFTDN 525 (623)
T ss_pred hH-------HhhccccCceEEecCC
Confidence 76 3322211345666666
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-18 Score=142.11 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|.|++ |.++ .+|+.+..+ .+| ++|++++|.+.. +|..++.+++|+.|+++. ...+|..||
T Consensus 34 ~ITrLtLSH--------NKl~-~vppnia~l-~nl--evln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 34 NITRLTLSH--------NKLT-VVPPNIAEL-KNL--EVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhhhhhccc--------Ccee-ecCCcHHHh-hhh--hhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccC
Confidence 556666666 5555 556666666 666 666666666655 566666666666666655 555566666
Q ss_pred CCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 151 EYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
.++.|+.|||.+|++.. .+|.. +-.+.. ++.+++++| +|. -+|..++++++|+.
T Consensus 100 s~p~levldltynnl~e~~lpgn-------ff~m~t-lralyl~dn----------------dfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-------FFYMTT-LRALYLGDN----------------DFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred CCchhhhhhccccccccccCCcc-------hhHHHH-HHHHHhcCC----------------Ccc-cCChhhhhhcceeE
Confidence 66666666666666543 34443 333333 555555555 443 34555555555555
Q ss_pred EEcccCcC
Q 038586 230 VERYSSSL 237 (353)
Q Consensus 230 L~Ls~N~l 237 (353)
|.+.+|.+
T Consensus 155 l~lrdndl 162 (264)
T KOG0617|consen 155 LSLRDNDL 162 (264)
T ss_pred EeeccCch
Confidence 55555554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-17 Score=135.88 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=146.6
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
++++ .++ +.|.||+|.++. +|+.+..+.+|+.|++++ ...+|.++..+++|++|+++.|++. .+|..
T Consensus 29 Lf~~-s~I--TrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprg----- 97 (264)
T KOG0617|consen 29 LFNM-SNI--TRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRG----- 97 (264)
T ss_pred ccch-hhh--hhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccc-----
Confidence 5667 888 999999999998 799999999999999999 8999999999999999999999988 88888
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQN 256 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~ 256 (353)
++.... ++.+++..| .+. ..+|..|..++-|+.|++++|.|. .+| .++|
T Consensus 98 --fgs~p~-levldltyn----------------nl~e~~lpgnff~m~tlralyl~dndfe-~lp----~dvg------ 147 (264)
T KOG0617|consen 98 --FGSFPA-LEVLDLTYN----------------NLNENSLPGNFFYMTTLRALYLGDNDFE-ILP----PDVG------ 147 (264)
T ss_pred --cCCCch-hhhhhcccc----------------ccccccCCcchhHHHHHHHHHhcCCCcc-cCC----hhhh------
Confidence 888888 899999988 554 357888999999999999999995 678 8999
Q ss_pred ccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcc
Q 038586 257 KQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREF 307 (353)
Q Consensus 257 ~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~ 307 (353)
++++|+.|.+.+ -.+|.+++.+..|++|.+.+|.+..+|+ .++++..
T Consensus 148 --~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp--el~~l~l 197 (264)
T KOG0617|consen 148 --KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP--ELANLDL 197 (264)
T ss_pred --hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh--hhhhhhh
Confidence 999999999998 6789999999999999999999999999 6665543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-15 Score=145.02 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=151.9
Q ss_pred CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-C
Q 038586 71 TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-H 147 (353)
Q Consensus 71 ~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~ 147 (353)
+||++.|+|.+ |.++..-.+++..+ +.| +.||||.|.|+..+ -..|..-.++++|+|++ ++.+- .
T Consensus 124 sghl~~L~L~~--------N~I~sv~se~L~~l-~al--rslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 124 SGHLEKLDLRH--------NLISSVTSEELSAL-PAL--RSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred ccceeEEeeec--------cccccccHHHHHhH-hhh--hhhhhhhchhhccc-CCCCCCCCCceEEeeccccccccccc
Confidence 57899999999 88875555678888 999 99999999999852 23466777899999988 55443 4
Q ss_pred CCCCCCCCCEEEccCcccce-------ecCccccccCCCc----------CCCCccccceeccCCcCCCCCCC-------
Q 038586 148 SVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQN----------GQQGAEAEAVCIQHNQANDIPCS------- 203 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~----------~~l~~~l~~l~l~~N~l~~i~~~------- 203 (353)
.|..+.+|.+|.|++|+++. .+|.++.|+|..| ..+.+ ++.+.+..|.+..+...
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecc
Confidence 57788888999999998873 2455555555443 23334 55566666655443311
Q ss_pred -CCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhc
Q 038586 204 -SNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELL 278 (353)
Q Consensus 204 -~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~ 278 (353)
...++.++++...--.++.+|+.|+.|++|+|.|..+.+ ..+. -+.+|++|+|+. ..++ .++.
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~----d~Ws--------ftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI----DSWS--------FTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeec----chhh--------hcccceeEeccccccccCChhHHH
Confidence 112334444544445566777888888888888877666 6666 677888888887 3443 4577
Q ss_pred CCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 279 CLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.|+.|++|+|++|.++.+-+. .|..+++|+.||...+
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~-af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEG-AFVGLSSLHKLDLRSN 375 (873)
T ss_pred HHHHhhhhcccccchHHHHhh-HHHHhhhhhhhcCcCC
Confidence 778888888888888777663 6777888888876443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-16 Score=146.23 Aligned_cols=207 Identities=15% Similarity=0.139 Sum_probs=141.3
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.+++.+ |.++ ++|++++.+ ..+ +.++.++|+++. +|+.++.+.+|+.|+.++ ..++|++++
T Consensus 69 ~l~vl~~~~--------n~l~-~lp~aig~l-~~l--~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 69 CLTVLNVHD--------NKLS-QLPAAIGEL-EAL--KSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred ceeEEEecc--------chhh-hCCHHHHHH-HHH--HHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHH
Confidence 467888888 8887 899999999 999 999999999988 799999999999999988 788899999
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC--Ccccc----ceeeeCCcchhcc
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN--NVQTV----EFEGEMEHSLSEV 224 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~--~l~~~----~l~g~~p~~l~~l 224 (353)
.+-.|+.++..+|+++ ++|.. ...+.. +..+++.+|.+..+|..... .++.+ .+-+++|+.++.+
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~-------~~~~~~-l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPED-------MVNLSK-LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred HHhhhhhhhccccccc-cCchH-------HHHHHH-HHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence 9999999999999987 66665 444444 55566666666555432111 11111 2345889999999
Q ss_pred CCCCEEEcccCcCcccCCCCCccccc-h---------------hhhhcccCCCccceeecCC---CCCchhhcCCCCCCE
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHG-D---------------AAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILE 285 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~-~---------------~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~ 285 (353)
.+|..|++..|++.. +| +|+ - .+.+..+.+.++..|++++ ..+|.++..+.+|.+
T Consensus 206 ~~L~~LyL~~Nki~~-lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRF-LP-----EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhHHHHhhhccccc-CC-----CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 999999999999863 55 333 0 0112223445555555554 445555555555555
Q ss_pred EEccCCCCCCCCcccccccCcccchh
Q 038586 286 IVESEVEIDSLPDRLVFDVREFLSEL 311 (353)
Q Consensus 286 L~Ls~N~l~~iP~~~~~~~l~~L~~L 311 (353)
||+|+|.++.+|. .++++ .|+.|
T Consensus 280 LDlSNN~is~Lp~--sLgnl-hL~~L 302 (565)
T KOG0472|consen 280 LDLSNNDISSLPY--SLGNL-HLKFL 302 (565)
T ss_pred hcccCCccccCCc--ccccc-eeeeh
Confidence 5555555555555 55555 44443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=149.86 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|++.+ +.+. .++..+..+ ++| ++|+|+++...+. +|. ++.+++|++|+|++ ...+|..
T Consensus 611 ~~L~~L~L~~--------s~l~-~L~~~~~~l-~~L--k~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 611 ENLVKLQMQG--------SKLE-KLWDGVHSL-TGL--RNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred cCCcEEECcC--------cccc-ccccccccC-CCC--CEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchh
Confidence 4678888888 6765 677767777 888 8888887654444 664 67788888888877 6677888
Q ss_pred CCCCCCCCEEEccCcccceecC------ccccccCCCcCCCCc------cccceeccCCcCCCCCCCC-C----------
Q 038586 149 VPEYPTLFDVEGYMASLVQILE------KDQHDEGSQNGQQGA------EAEAVCIQHNQANDIPCSS-N---------- 205 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp------~~~~L~l~~~~~l~~------~l~~l~l~~N~l~~i~~~~-~---------- 205 (353)
++++++|++|++++|...+.+| .+++|+++++..+.. .++.+++++|.+..+|... .
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccc
Confidence 8888888888888765433443 456666766543322 1567788888777666321 0
Q ss_pred ---------------------CCccccce-----eeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 206 ---------------------NNVQTVEF-----EGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 206 ---------------------~~l~~~~l-----~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
..++.+.+ .+.+|.+++++++|+.|++++|..-+.+|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 12222333 23478888899999999998876545566
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-16 Score=142.64 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=159.3
Q ss_pred CcEEEEEcCCCCCccccccCCccccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~ 147 (353)
...++|+|.. |.++ .|| .+|..+ ++| ++||||+|.|+.+ -|+.|.++.+|..|-+.+ +..+|.
T Consensus 67 ~~tveirLdq--------N~I~-~iP~~aF~~l-~~L--RrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQ--------NQIS-SIPPGAFKTL-HRL--RRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEecc--------CCcc-cCChhhccch-hhh--ceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3578999999 9998 566 478888 999 9999999999998 899999999988776655 666775
Q ss_pred C-CCCCCCCCEEEccCcccce-------ecCccccccCCCc----------CCCCccccceeccCCc-------------
Q 038586 148 S-VPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQN----------GQQGAEAEAVCIQHNQ------------- 196 (353)
Q Consensus 148 ~-l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~----------~~l~~~l~~l~l~~N~------------- 196 (353)
. |++|..|+.|.+.-|++.- .+|.+..|.+-.+ ..+.. .+.+.+..|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccchhhhH
Confidence 3 5666666666665555431 2222222222111 11111 2223333332
Q ss_pred -----------------------CCCCC-----CCCCC---Cc-cccceeeeCC-cchhccCCCCEEEcccCcCcccCCC
Q 038586 197 -----------------------ANDIP-----CSSNN---NV-QTVEFEGEME-HSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 197 -----------------------l~~i~-----~~~~~---~l-~~~~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
+..++ ++... .+ ......+..| ..|..+++|+.|+|++|+++++-+
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~- 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED- 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-
Confidence 11111 00000 00 0001112223 347789999999999999999888
Q ss_pred CCccccchhhhhcccCCCccceeecCCCCC---c-hhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCCC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQQND---P-IELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i---P-~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
.+|. +...+++|+|....+ . ..|..++.|+.|+|.+|+| .-.|. .|..+..|..|..+.++.
T Consensus 292 ---~aFe--------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~--aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 292 ---GAFE--------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG--AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ---hhhc--------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc--cccccceeeeeehccCcc
Confidence 8888 999999999998333 2 3467899999999999999 45566 899999999999999999
Q ss_pred ccccccccccccc
Q 038586 319 DEECGKLQAVAWE 331 (353)
Q Consensus 319 ~~~c~~l~~~~~~ 331 (353)
.++|.-.|-..|-
T Consensus 359 ~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 359 NCNCRLAWLGEWL 371 (498)
T ss_pred cCccchHHHHHHH
Confidence 9999988888884
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-13 Score=136.40 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=89.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
++++ .+|..+ . ++| +.|+|++|.++. +|..+. ++|++|++++ ...+|..+. .+|+.|++++|++.
T Consensus 188 ~~Lt-sLP~~I--p-~~L--~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 188 LGLT-TIPACI--P-EQI--TTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred CCcC-cCCccc--c-cCC--cEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-
Confidence 4554 455433 2 456 777777777775 565543 4677777766 445555443 35666666666655
Q ss_pred ecC-----ccccccCCCcCCCC------ccccceeccCCcCCCCCCCCCCCccc-----cceeeeCCcchhccCCCCEEE
Q 038586 168 ILE-----KDQHDEGSQNGQQG------AEAEAVCIQHNQANDIPCSSNNNVQT-----VEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 168 ~lp-----~~~~L~l~~~~~l~------~~l~~l~l~~N~l~~i~~~~~~~l~~-----~~l~g~~p~~l~~l~~L~~L~ 231 (353)
.+| .++.|+++.|.... ..++.|++++|+++.+|......++. +.++ .+|..+. ++|++|+
T Consensus 255 ~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~ 331 (754)
T PRK15370 255 ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETLP--PGLKTLE 331 (754)
T ss_pred cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCcccc--ccceecc
Confidence 333 24455555442211 11556666666666555322211221 2222 1333221 3566666
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|.+++ +| ..+. ++|+.|++++ ..+|..+. ++|+.|++++|+|..+|+
T Consensus 332 Ls~N~Lt~-LP----~~l~----------~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 332 AGENALTS-LP----ASLP----------PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred ccCCcccc-CC----hhhc----------CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence 66666654 44 2222 3566666665 34454432 456666666666655555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-13 Score=137.58 Aligned_cols=140 Identities=10% Similarity=0.047 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----------
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH----------- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~----------- 141 (353)
+++.|++.+ |+++ .+|.. + +.| ++|++++|+++. +|... ++|+.|++++
T Consensus 223 ~L~~L~L~~--------N~Lt-~LP~l---p-~~L--k~LdLs~N~Lts--LP~lp---~sL~~L~Ls~N~L~~Lp~lp~ 282 (788)
T PRK15387 223 HITTLVIPD--------NNLT-SLPAL---P-PEL--RTLEVSGNQLTS--LPVLP---PGLLELSIFSNPLTHLPALPS 282 (788)
T ss_pred CCCEEEccC--------CcCC-CCCCC---C-CCC--cEEEecCCccCc--ccCcc---cccceeeccCCchhhhhhchh
Confidence 567777777 6666 45542 3 666 777777777776 55432 3444444443
Q ss_pred -----------CCCCCCCCCCCCCCCEEEccCccccee--cC-ccccccCCCcCCCC-----ccccceeccCCcCCCCCC
Q 038586 142 -----------QGEIIHSVPEYPTLFDVEGYMASLVQI--LE-KDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPC 202 (353)
Q Consensus 142 -----------~~~lP~~l~~L~~L~~L~Ls~N~l~g~--lp-~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~ 202 (353)
...+|. .+++|++|++++|++++. +| .++.|++++|.... ..++.|++++|+++.+|.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 333332 125677788887777741 11 34556666554321 126777888888777663
Q ss_pred CCC----CCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 203 SSN----NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 203 ~~~----~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
... ..+..++++ .+|.. ..+|+.|++++|+|++
T Consensus 360 lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 360 LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS 396 (788)
T ss_pred CCcccceehhhccccc-cCccc---ccccceEEecCCcccC
Confidence 210 111222333 24432 2356677777776664
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-15 Score=141.88 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=145.4
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPE 151 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~ 151 (353)
+..+.+++ |.+. .+.+.+.++ ..| .+|++++|.+.. .|++++.+..++.|+.++ ...+|++++.
T Consensus 47 l~~lils~--------N~l~-~l~~dl~nL-~~l--~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s 112 (565)
T KOG0472|consen 47 LQKLILSH--------NDLE-VLREDLKNL-ACL--TVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGS 112 (565)
T ss_pred hhhhhhcc--------Cchh-hccHhhhcc-cce--eEEEeccchhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhh
Confidence 46678888 7876 667778999 999 999999999998 799999999999999999 8899999999
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC-------CCccccceeeeCCcchhcc
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN-------NNVQTVEFEGEMEHSLSEV 224 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~-------~~l~~~~l~g~~p~~l~~l 224 (353)
+.+|+.++.++|.+. .+|.. ++.+.. ++.++..+|+++.+|.... ..+...+++ ..|+..-++
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~-------i~~~~~-l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m 182 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDS-------IGRLLD-LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM 182 (565)
T ss_pred hhhhhhhhcccccee-ecCch-------HHHHhh-hhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHH
Confidence 999999999999998 67766 666666 7888889996666553221 122222333 233333346
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
+.|++||...|-+. .+| +.+| .|.+|+.||+.+ ..+| +|..++.|++|.++.|++..+|. .
T Consensus 183 ~~L~~ld~~~N~L~-tlP----~~lg--------~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpa--e 246 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLP----PELG--------GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPA--E 246 (565)
T ss_pred HHHHhcccchhhhh-cCC----hhhc--------chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHH--H
Confidence 66666666666553 455 5666 666666666666 4445 56666666666666666666666 3
Q ss_pred c-ccCcccchhccccC
Q 038586 302 F-DVREFLSELDQIAE 316 (353)
Q Consensus 302 ~-~~l~~L~~Ld~~~~ 316 (353)
. ..++.+..||..++
T Consensus 247 ~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccccceeeecccc
Confidence 3 35666666665443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=138.52 Aligned_cols=208 Identities=15% Similarity=0.052 Sum_probs=138.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
.++.|++.+ +.+. .+|..+ .. .+| ++|++++|.+.. +|..+..+++|++|+|++ .+.+|. +
T Consensus 590 ~Lr~L~~~~--------~~l~-~lP~~f-~~-~~L--~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 590 KLRLLRWDK--------YPLR-CMPSNF-RP-ENL--VKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred ccEEEEecC--------CCCC-CCCCcC-Cc-cCC--cEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-c
Confidence 577888888 6665 788766 56 899 999999999987 788899999999999997 667774 8
Q ss_pred CCCCCCCEEEccCcccceec-------CccccccCCCcCCC---------CccccceeccCCc-CCCCCCCCCCCccccc
Q 038586 150 PEYPTLFDVEGYMASLVQIL-------EKDQHDEGSQNGQQ---------GAEAEAVCIQHNQ-ANDIPCSSNNNVQTVE 212 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~l-------p~~~~L~l~~~~~l---------~~~l~~l~l~~N~-l~~i~~~~~~~l~~~~ 212 (353)
+.+++|++|++++|.....+ +.++.|+++++..+ .. ++.+.+++|. +..+|.. ..+++.+.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s-L~~L~Lsgc~~L~~~p~~-~~nL~~L~ 731 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS-LYRLNLSGCSRLKSFPDI-STNISWLD 731 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC-CCEEeCCCCCCccccccc-cCCcCeee
Confidence 89999999999998754444 45677777765332 23 5566777663 3334321 11222222
Q ss_pred eee----eCCcch------------------------------hccCCCCEEEcccCcCcccCCCCCccccchhhhhccc
Q 038586 213 FEG----EMEHSL------------------------------SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQ 258 (353)
Q Consensus 213 l~g----~~p~~l------------------------------~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 258 (353)
+.+ .+|..+ ...++|+.|++++|...+.+| ..++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP----~si~-------- 799 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP----SSIQ-------- 799 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC----hhhh--------
Confidence 221 233321 112467778888887777778 6777
Q ss_pred CCCccceeecCC----CCCchhhcCC---------------------CCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQ----QNDPIELLCL---------------------DNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~----~~iP~~l~~l---------------------~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++++|+.|++++ +.+|..+ .+ .+|++|+|++|.+..+|. .+..++.|+.|+.
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~--si~~l~~L~~L~L 876 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW--WIEKFSNLSFLDM 876 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChH--HHhcCCCCCEEEC
Confidence 777777777765 4455432 22 345666666666666777 6667777776653
|
syringae 6; Provisional |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-12 Score=135.78 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=120.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
|.++ .+|..+ . .+| ++|++++|.++. +|..+. .+|+.|+|++ ...+|..+. ++|++|++++|+++.
T Consensus 209 N~Lt-sLP~~l--~-~nL--~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 209 NELK-SLPENL--Q-GNI--KTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISC 276 (754)
T ss_pred CCCC-cCChhh--c-cCC--CEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCc
Confidence 7777 677654 3 677 888999888886 676553 4688888887 667776654 478888888887763
Q ss_pred ecC-----ccccccCCCcCCCC------ccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEE
Q 038586 168 ILE-----KDQHDEGSQNGQQG------AEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 168 ~lp-----~~~~L~l~~~~~l~------~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~ 231 (353)
+| .+++|++++|.... ..++.+++++|+++.+|......++.+ .++ .+|..+. ++|+.|+
T Consensus 277 -LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~ 352 (754)
T PRK15370 277 -LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLD 352 (754)
T ss_pred -cccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEE
Confidence 33 45777777764322 125677888898888775444444433 333 3565553 6899999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+|+. +| ..+. +.|+.|++++ ..+|..+. .+|+.|++++|++..+|.
T Consensus 353 Ls~N~L~~-LP----~~lp----------~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 353 VSKNQITV-LP----ETLP----------PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred CCCCCCCc-CC----hhhc----------CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCch
Confidence 99999874 66 4333 4788888888 56776654 368888888888877776
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=128.70 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=128.8
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEY 152 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L 152 (353)
..|+++. ++++ .+|+.+. .+| +.|++++|+++. +|.. +++|++|++++ ...+|.. .
T Consensus 204 ~~LdLs~--------~~Lt-sLP~~l~---~~L--~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 204 AVLNVGE--------SGLT-TLPDCLP---AHI--TTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred cEEEcCC--------CCCC-cCCcchh---cCC--CEEEccCCcCCC--CCCC---CCCCcEEEecCCccCcccCc---c
Confidence 4689999 8998 7998763 678 999999999998 7753 58999999999 6677753 3
Q ss_pred CCCCEEEccCcccce---ecCccccccCCCcCCCC-----ccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCc
Q 038586 153 PTLFDVEGYMASLVQ---ILEKDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEH 219 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g---~lp~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~ 219 (353)
++|+.|++++|.++. ..+.++.|++++|.... ..++.|++++|+++.+|.. ...++.+ .++ .+|.
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred cccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCC-cccccccccccCccc-cccc
Confidence 678889999998773 12245667777764432 1278888999988887642 1122222 333 2442
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchh-----hhhcc-cCCCccceeecCC---CCCchhhcCCCCCCEEEccC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDA-----AIQNK-QQEAVEEEALLAQ---QNDPIELLCLDNILEIVESE 290 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~-----~~~~~-~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~ 290 (353)
. ..+|++|++++|+|++ +|... ..+... .+... .....|+.|++++ ..+|.. .++|+.|++++
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSG 411 (788)
T ss_pred c---ccccceEecCCCccCC-CCCCC-cccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccC
Confidence 1 1468899999998876 34100 111100 00000 0223577777777 445543 25688888888
Q ss_pred CCCCCCCcccccccCcccchhcc
Q 038586 291 VEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
|+|..+|. .+. .|+.|+.
T Consensus 412 N~LssIP~--l~~---~L~~L~L 429 (788)
T PRK15387 412 NRLTSLPM--LPS---GLLSLSV 429 (788)
T ss_pred CcCCCCCc--chh---hhhhhhh
Confidence 88877877 433 3445554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-13 Score=139.03 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.+|++. ++++ .+|+.+..+ .+| +.++..+|++.. +|..+..+++|++|+..+ ...+|+...
T Consensus 242 nl~~~dis~--------n~l~-~lp~wi~~~-~nl--e~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~yip~~le 307 (1081)
T KOG0618|consen 242 NLQYLDISH--------NNLS-NLPEWIGAC-ANL--EALNANHNRLVA--LPLRISRITSLVSLSAAYNELEYIPPFLE 307 (1081)
T ss_pred cceeeecch--------hhhh-cchHHHHhc-ccc--eEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence 445555555 7776 567777777 777 888888888765 677777778888877777 777888888
Q ss_pred CCCCCCEEEccCcccceecCcc---------ccccCCCcC---------CCCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 151 EYPTLFDVEGYMASLVQILEKD---------QHDEGSQNG---------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~---------~~L~l~~~~---------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
.++.|++|||..|++. .+|.. ..|+.+.+. .....++.+++.+| .
T Consensus 308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN----------------~ 370 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN----------------H 370 (1081)
T ss_pred ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC----------------c
Confidence 8888888888888876 55532 111111110 00111344555555 4
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----------------------
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---------------------- 270 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---------------------- 270 (353)
++...-+.+-+..+|+.|+|++|++. .+|+ ..+. ++..|++|+|++
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpa---s~~~--------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLN-SFPA---SKLR--------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred ccccchhhhccccceeeeeecccccc-cCCH---HHHh--------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 44444444555555666666666553 2331 2223 445555555555
Q ss_pred ----CCCchhhcCCCCCCEEEccCCCC--CCCCcccccccCcccchhccccCC
Q 038586 271 ----QNDPIELLCLDNILEIVESEVEI--DSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 271 ----~~iP~~l~~l~~L~~L~Ls~N~l--~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
..+| ++..++.|+.+|+|.|++ ..+|. .... +.|++||..-+.
T Consensus 439 sN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCceeech-hhhhcCcceEEecccchhhhhhhhh--hCCC-cccceeeccCCc
Confidence 3445 666777778888888877 45555 2222 677777764443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-12 Score=130.67 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=155.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
++.+||+++ |.+. .+|..+..+ .+| +.|+++.|.+.. +|....++.+|++|.|.+ ...+|.++.
T Consensus 46 ~L~~l~lsn--------n~~~-~fp~~it~l-~~L--~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSN--------NQIS-SFPIQITLL-SHL--RQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred eeEEeeccc--------cccc-cCCchhhhH-HHH--hhcccchhhHhh--CchhhhhhhcchhheeccchhhcCchhHH
Confidence 478999998 6664 899999999 999 999999999988 788999999999999999 888999999
Q ss_pred CCCCCCEEEccCcccceecCc-------cccccCCCc------CCCCcccc----------------------ceeccCC
Q 038586 151 EYPTLFDVEGYMASLVQILEK-------DQHDEGSQN------GQQGAEAE----------------------AVCIQHN 195 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~-------~~~L~l~~~------~~l~~~l~----------------------~l~l~~N 195 (353)
.+.+|++||+++|.|. .+|. ...+..++| +... .+ .+++.+|
T Consensus 112 ~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N 188 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN 188 (1081)
T ss_pred hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhcchhhhheeeecccc
Confidence 9999999999999976 3331 122233332 0000 12 2444555
Q ss_pred cCCCCCCCCCCCccccceeeeCCcch-hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---C
Q 038586 196 QANDIPCSSNNNVQTVEFEGEMEHSL-SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---Q 271 (353)
Q Consensus 196 ~l~~i~~~~~~~l~~~~l~g~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~ 271 (353)
.+.....+...+++.+..+...-..+ -..++|+.|+.++|.++...+ . + .-.+|+.+++++ .
T Consensus 189 ~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~----~--p--------~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 189 EMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV----H--P--------VPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc----c--c--------ccccceeeecchhhhh
Confidence 44433322222222222111100000 012345555555555543222 1 1 345677777777 6
Q ss_pred CCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcccc------CCCcccccccccccccc-cccCCChHHHHH
Q 038586 272 NDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA------EPRDEECGKLQAVAWEE-EMGPLPVEFLSR 344 (353)
Q Consensus 272 ~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~------~~~~~~c~~l~~~~~~~-~~~~lp~~~~~~ 344 (353)
.+|+++..+.+|+.++..+|.|..+|. .+...+.|+.++... .+..+.-..+..++..+ ..+.+|..++.-
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~--ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPL--RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHH--HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 777777778888888888888877777 666666777666432 23333344555555443 347778888877
Q ss_pred HHHHhh
Q 038586 345 VNQVLN 350 (353)
Q Consensus 345 ~~~~~~ 350 (353)
++.++|
T Consensus 333 ~~~~l~ 338 (1081)
T KOG0618|consen 333 LNASLN 338 (1081)
T ss_pred hhHHHH
Confidence 777655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-12 Score=117.33 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhcc---ccccEEEeecCCCCCCC---CCcccCCC-CCCcEEeccC--CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNC---MIYDIWTLVTINFGGIP---VPEFVGSL-SKLSLNTVDH--QG 143 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~---L~~~~L~Ls~N~l~~~~---~P~~~~~L-~~L~~L~Ls~--~~ 143 (353)
+++.|++++ +.+.+..+..+..+ .. | ++|++++|++++.. +...+..+ ++|+.|++++ ..
T Consensus 82 ~L~~L~l~~--------~~~~~~~~~~~~~l-~~~~~L--~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 82 GLQELDLSD--------NALGPDGCGVLESL-LRSSSL--QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ceeEEEccC--------CCCChhHHHHHHHH-hccCcc--cEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 566666666 56655555555555 44 6 66666666665310 22234445 6666666665 11
Q ss_pred -----CCCCCCCCCCCCCEEEccCccccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee
Q 038586 144 -----EIIHSVPEYPTLFDVEGYMASLVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 144 -----~lP~~l~~L~~L~~L~Ls~N~l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
.++..+..+++|++|++++|.+.+. ++.. ...... ++.+++++|++.+.. .
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-------l~~~~~-L~~L~L~~n~i~~~~------------~ 210 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-------LKANCN-LEVLDLNNNGLTDEG------------A 210 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-------HHhCCC-CCEEeccCCccChHH------------H
Confidence 1233344555666666666665531 1111 111123 566666666221100 0
Q ss_pred eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCCCCCCEE
Q 038586 215 GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCLDNILEI 286 (353)
Q Consensus 215 g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l~~L~~L 286 (353)
+.++..+..+++|++|++++|++++... ..+... +. ...+.|++|++++..+ ...+..+++|+++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~----~~l~~~-~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGA----AALASA-LL--SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHH----HHHHHH-Hh--ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 1233445556777777777777654211 111100 00 0235677777776332 3345556677777
Q ss_pred EccCCCCC
Q 038586 287 VESEVEID 294 (353)
Q Consensus 287 ~Ls~N~l~ 294 (353)
++++|.++
T Consensus 284 ~l~~N~l~ 291 (319)
T cd00116 284 DLRGNKFG 291 (319)
T ss_pred ECCCCCCc
Confidence 77777774
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-12 Score=120.71 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=140.9
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPE 151 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~ 151 (353)
.+..||+. |.+. ++|..+..+ ..| +.+.|..|.+.. +|..++++..|.+|||+. ...+|..++.
T Consensus 77 t~~aDlsr--------NR~~-elp~~~~~f-~~L--e~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 77 TVFADLSR--------NRFS-ELPEEACAF-VSL--ESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred hhhhhccc--------cccc-cCchHHHHH-HHH--HHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 34567777 8887 899888888 888 999999999987 799999999999999998 8888998888
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
|+ |+.|-+++|+++ .+|.. .+.... +..++.+.| ++. .+|+.++.+..|+.|.
T Consensus 143 lp-Lkvli~sNNkl~-~lp~~-------ig~~~t-l~~ld~s~n----------------ei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLT-SLPEE-------IGLLPT-LAHLDVSKN----------------EIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred Cc-ceeEEEecCccc-cCCcc-------cccchh-HHHhhhhhh----------------hhh-hchHHhhhHHHHHHHH
Confidence 87 899999999988 77777 664445 778888888 554 6788899999999999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++.|++.. +| +.+. .-.|..||++. ..||-.|..|+.|++|-|.+|.+.+-|.
T Consensus 196 vrRn~l~~-lp----~El~---------~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 196 VRRNHLED-LP----EELC---------SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred Hhhhhhhh-CC----HHHh---------CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 99999875 55 3444 23478889988 7789999999999999999999987776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-12 Score=117.15 Aligned_cols=180 Identities=17% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCC---CcEEeccC--CC-----CCCCCCCCC-CCCCEEEccCcccc
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSK---LSLNTVDH--QG-----EIIHSVPEY-PTLFDVEGYMASLV 166 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~---L~~L~Ls~--~~-----~lP~~l~~L-~~L~~L~Ls~N~l~ 166 (353)
..+..+ ++| ++|++++|.+.+. .+..+..+.+ |++|++++ .. .+...+..+ ++|+.|++++|.++
T Consensus 75 ~~l~~~-~~L--~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 75 QGLTKG-CGL--QELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHhc-Cce--eEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 344444 555 6666666655543 3443333333 66666555 11 122233344 55566666665555
Q ss_pred ee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee----eCCcchhccCCCCEEEcccCcCc
Q 038586 167 QI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 167 g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+. ++.. +..... ++.+++++| .+++ .++..+...++|++|++++|.++
T Consensus 151 ~~~~~~~~~~-------~~~~~~-L~~L~l~~n----------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 151 GASCEALAKA-------LRANRD-LKELNLANN----------------GIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred chHHHHHHHH-------HHhCCC-cCEEECcCC----------------CCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 31 1111 122223 556666666 3332 23334445567777777777665
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCCCCCch----hhc-----CCCCCCEEEccCCCCC-----CCCccccccc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPI----ELL-----CLDNILEIVESEVEID-----SLPDRLVFDV 304 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~----~l~-----~l~~L~~L~Ls~N~l~-----~iP~~~~~~~ 304 (353)
+.........+. .+++|++|++++..+-. .+. ..++|++|++++|.++ .++. .+..
T Consensus 207 ~~~~~~l~~~~~--------~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~ 276 (319)
T cd00116 207 DEGASALAETLA--------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAE 276 (319)
T ss_pred hHHHHHHHHHhc--------ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhc
Confidence 322100002223 56667777777622221 111 1356777777777763 1223 3344
Q ss_pred Ccccchhcccc
Q 038586 305 REFLSELDQIA 315 (353)
Q Consensus 305 l~~L~~Ld~~~ 315 (353)
.+.|+++|...
T Consensus 277 ~~~L~~l~l~~ 287 (319)
T cd00116 277 KESLLELDLRG 287 (319)
T ss_pred CCCccEEECCC
Confidence 45555555433
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-12 Score=121.27 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=139.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
...||+.|++.. +|..++.+..|+.+.|.. ...+|..++++..|.+||++.|+++ .+|.- ...+. +
T Consensus 78 ~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-------lC~lp--L 145 (722)
T KOG0532|consen 78 VFADLSRNRFSE--LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDG-------LCDLP--L 145 (722)
T ss_pred hhhhcccccccc--CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChh-------hhcCc--c
Confidence 788999999998 899999999999999988 8899999999999999999999988 66654 33333 7
Q ss_pred cceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceee
Q 038586 188 EAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
+.+.+++| +++ .+|..++.+..|..||.+.|++. .+| ..++ ++.+|+.|+
T Consensus 146 kvli~sNN----------------kl~-~lp~~ig~~~tl~~ld~s~nei~-slp----sql~--------~l~slr~l~ 195 (722)
T KOG0532|consen 146 KVLIVSNN----------------KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP----SQLG--------YLTSLRDLN 195 (722)
T ss_pred eeEEEecC----------------ccc-cCCcccccchhHHHhhhhhhhhh-hch----HHhh--------hHHHHHHHH
Confidence 88999999 555 67888888889999999999996 467 6888 899999999
Q ss_pred cCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 268 LAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 268 L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
+.. ..+|+++..| .|..||+|.|++..||- .|..|+.|+.|..-.+
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENN 244 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeecccCceeecch--hhhhhhhheeeeeccC
Confidence 887 7899999965 69999999999999999 9999999998865433
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=112.61 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=73.2
Q ss_pred CcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccc
Q 038586 134 LSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQT 210 (353)
Q Consensus 134 L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~ 210 (353)
++.|+|++ .|.+|..++++++|+.|+|++|.+.|.+|.. ++.+.. ++.|++++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-------~~~l~~-L~~LdLs~N--------------- 476 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-------LGSITS-LEVLDLSYN--------------- 476 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-------HhCCCC-CCEEECCCC---------------
Confidence 56677777 6677777777777888888887777777776 666666 777777777
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC-CCccceeecCC
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ-EAVEEEALLAQ 270 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~-l~~L~~L~L~~ 270 (353)
+++|.+|+.++++++|++|+|++|+++|.+| ..++ . ...+..+++.+
T Consensus 477 -~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP----~~l~--------~~~~~~~~l~~~~ 524 (623)
T PLN03150 477 -SFNGSIPESLGQLTSLRILNLNGNSLSGRVP----AALG--------GRLLHRASFNFTD 524 (623)
T ss_pred -CCCCCCchHHhcCCCCCEEECcCCcccccCC----hHHh--------hccccCceEEecC
Confidence 7777777777788888888888888877777 5555 2 23445566655
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-10 Score=107.33 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=130.0
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC-CCcEEeccC--CCCCCCCCCCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS-KLSLNTVDH--QGEIIHSVPEY 152 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~-~L~~L~Ls~--~~~lP~~l~~L 152 (353)
.+++.. +.+...+ ..+..+ +.+ +.|++.+|.++. +|+....++ +|+.|+++. ...+|..++.+
T Consensus 97 ~l~~~~--------~~~~~~~-~~~~~~-~~l--~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l 162 (394)
T COG4886 97 SLDLNL--------NRLRSNI-SELLEL-TNL--TSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162 (394)
T ss_pred eeeccc--------cccccCc-hhhhcc-cce--eEEecCCccccc--Cccccccchhhcccccccccchhhhhhhhhcc
Confidence 466666 5554333 335566 778 888888888887 677777775 888998888 77777778888
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCC
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYD 226 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~ 226 (353)
++|+.|++++|++. .+|.. .+.... ++.+.+++|+++++|.. ....+..+.+.+ ..+..+.++.+
T Consensus 163 ~~L~~L~l~~N~l~-~l~~~-------~~~~~~-L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~ 233 (394)
T COG4886 163 PNLKNLDLSFNDLS-DLPKL-------LSNLSN-LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233 (394)
T ss_pred ccccccccCCchhh-hhhhh-------hhhhhh-hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhccc
Confidence 89999999988887 55544 223444 77788888877777764 222233333322 35667778888
Q ss_pred CCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCC
Q 038586 227 IFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 227 L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~i 296 (353)
+..+.+.+|++.. ++ ..++ .++.++.|++++ ..++. ++.+.+++.|++++|.+..+
T Consensus 234 l~~l~l~~n~~~~-~~----~~~~--------~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 234 LSGLELSNNKLED-LP----ESIG--------NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccCCceeee-cc----chhc--------cccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 8888888888754 24 5666 788888888888 45555 78888899999999888433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-09 Score=104.46 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=130.6
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCC-CCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 111 IWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYP-TLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 111 ~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~-~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
.++++.|.+.. -+..+..++.++.|++.+ ...+|+..+.+. +|+.|++++|.+. .+|.. ...+.. +
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-------~~~l~~-L 165 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-------LRNLPN-L 165 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-------hhcccc-c
Confidence 58888888855 355566779999999999 889999988885 9999999999988 55433 556666 8
Q ss_pred cceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCC
Q 038586 188 EAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEA 261 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~ 261 (353)
+.+++++|++.+++.. ....+..+.+.+ .+|........|.++.+++|++.. .+ ..+. ++.
T Consensus 166 ~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~----~~~~--------~~~ 232 (394)
T COG4886 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LL----SSLS--------NLK 232 (394)
T ss_pred cccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cc----hhhh--------hcc
Confidence 9999999988888765 444444444433 455555555668888888885332 33 3455 677
Q ss_pred ccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 262 VEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 262 ~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
.+..+.+.+ ..+|..+..+++++.|++++|++..++. ++.+..++.||...
T Consensus 233 ~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred cccccccCCceeeeccchhccccccceecccccccccccc---ccccCccCEEeccC
Confidence 777777666 3447788888899999999999988877 66777777777643
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-09 Score=98.47 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=82.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccC-ccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYM-ASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~-N~l 165 (353)
.+++ .+|..+. ..- ..++|..|.|+.. -|..|+.+++|+.|||++ +..| |..|..+.+|..|-+.+ |++
T Consensus 56 ~GL~-eVP~~LP---~~t--veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 56 KGLT-EVPANLP---PET--VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CCcc-cCcccCC---Ccc--eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4454 5665332 455 8889999999995 455699999999999999 5555 77888999888887766 777
Q ss_pred ceecC-ccccccCCCcCCCCccccceeccCCcCCCCCCCCC---CCcccc-----ceeeeCCc-chhccCCCCEEEcccC
Q 038586 166 VQILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN---NNVQTV-----EFEGEMEH-SLSEVYDIFDVERYSS 235 (353)
Q Consensus 166 ~g~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~---~~l~~~-----~l~g~~p~-~l~~l~~L~~L~Ls~N 235 (353)
+ .+| +. ++.+.. ++.|.+.-|++.-++.... ..+..+ .+. .++. +|..+..++.+.+..|
T Consensus 129 ~-~l~k~~-------F~gL~s-lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 129 T-DLPKGA-------FGGLSS-LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred h-hhhhhH-------hhhHHH-HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcC
Confidence 7 444 33 555555 6666666664433321111 011000 222 2333 6667777777777777
Q ss_pred c
Q 038586 236 S 236 (353)
Q Consensus 236 ~ 236 (353)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 6
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-08 Score=63.69 Aligned_cols=42 Identities=38% Similarity=0.847 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCccccceEec
Q 038586 26 IDEEKEALLTFEQSPV-DEYGALSSWGREDDKRNCCKWRGVCCN 68 (353)
Q Consensus 26 ~~~e~~aLl~~k~~~~-~~~~~~~~W~~~~~~~~~C~w~gv~c~ 68 (353)
+++|++||++||+++. +|.+.+.+|.... ..+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 3689999999999999 4657899995321 1239999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-08 Score=86.45 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=22.0
Q ss_pred hhcCCCCCCEEEccCCCCCCCCc--ccccccCcccchhccc
Q 038586 276 ELLCLDNILEIVESEVEIDSLPD--RLVFDVREFLSELDQI 314 (353)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~iP~--~~~~~~l~~L~~Ld~~ 314 (353)
.+..+++|+.|++.+|++..-+. ..++..+|.|+.||..
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 45667899999999999844343 1256778888888864
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-08 Score=85.28 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
..+ ++|+|++|.|+. + +.++ .+.+|+.|+|++ ...++ .+..++.|++|++++|+++..-+.. ..
T Consensus 19 ~~~--~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l-------~~ 85 (175)
T PF14580_consen 19 VKL--RELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL-------DK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH-------HH
T ss_pred ccc--cccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch-------HH
Confidence 456 777777777775 3 2344 466777777777 44443 3666777888888888776221111 11
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.+.. ++++++++|++.++. . -..++.+++|++|++.+|++..
T Consensus 86 ~lp~-L~~L~L~~N~I~~l~--------------~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPN-LQELYLSNNKISDLN--------------E-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT---EEE-TTS---SCC--------------C-CGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCc-CCEEECcCCcCCChH--------------H-hHHHHcCCCcceeeccCCcccc
Confidence 2334 667777777444332 1 1356677788888888887754
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7e-08 Score=87.59 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
..+.|+.+||++|.++ .+... ...... ++.+++++| .+.. ...+..+++|+.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDES-------vKL~Pk-ir~L~lS~N----------------~i~~--v~nLa~L~~L~~L 334 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDES-------VKLAPK-LRRLILSQN----------------RIRT--VQNLAELPQLQLL 334 (490)
T ss_pred hHhhhhhccccccchh-hhhhh-------hhhccc-eeEEecccc----------------ceee--ehhhhhcccceEe
Confidence 3445677777777765 22222 122222 566677777 4442 2347788899999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCCCCCEEEccCCCCCCCCcccccccCccc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLDNILEIVESEVEIDSLPDRLVFDVREFL 308 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L 308 (353)
|||+|.++.. . .+-. ++.+++.|.|++..|- ..++.+-+|..||+++|+|..+-+.-.+|+++.|
T Consensus 335 DLS~N~Ls~~-~----Gwh~--------KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 335 DLSGNLLAEC-V----GWHL--------KLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ecccchhHhh-h----hhHh--------hhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 9999988643 2 3434 7788889999884442 3467778899999999999666554468999999
Q ss_pred chhccccCCC
Q 038586 309 SELDQIAEPR 318 (353)
Q Consensus 309 ~~Ld~~~~~~ 318 (353)
+.+....+|.
T Consensus 402 E~l~L~~NPl 411 (490)
T KOG1259|consen 402 ETLRLTGNPL 411 (490)
T ss_pred HHHhhcCCCc
Confidence 9988776654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-08 Score=92.59 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=80.7
Q ss_pred cccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecC
Q 038586 93 KGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 93 ~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
.|.+-.++..- +.| +.+|||+|.|+. +..++.-++.++.|++|+ ...+- .+..|++|+.|||++|.++ .+-
T Consensus 273 ~G~~~~~~dTW-q~L--telDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 273 NGSALVSADTW-QEL--TELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred CCceEEecchH-hhh--hhccccccchhh--hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhH-hhh
Confidence 33333333334 566 889999999988 678888888999999998 33333 3778889999999999877 444
Q ss_pred ccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 171 KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 171 ~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.+ ...++. .+.+.++.|.+.+ -+.++++.+|..||+++|+|..
T Consensus 346 Gw-------h~KLGN-IKtL~La~N~iE~------------------LSGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 346 GW-------HLKLGN-IKTLKLAQNKIET------------------LSGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hh-------HhhhcC-EeeeehhhhhHhh------------------hhhhHhhhhheeccccccchhh
Confidence 44 555666 7778888882221 1346677788889999888754
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.9e-07 Score=64.10 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred cccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCccc
Q 038586 106 CMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 106 ~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l 165 (353)
+| ++|++++|+++.. -+..|.++++|++|++++ ...+| ..|.++++|++|++++|++
T Consensus 2 ~L--~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NL--ESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TE--SEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cC--cEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56 7888888888874 335677888888888887 44554 4578888888888888864
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-07 Score=89.76 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=89.9
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----CCCCCCCCCCCCCCCEEEccCcccc--------ee
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-----QGEIIHSVPEYPTLFDVEGYMASLV--------QI 168 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-----~~~lP~~l~~L~~L~~L~Ls~N~l~--------g~ 168 (353)
++ ..| +...|.+..+...+.-.....+++++.|||+. ...+-.-...|++|+.|+++.|++. +.
T Consensus 119 n~-kkL--~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NL-KKL--REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hH-Hhh--hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 45 566 66677666665421112345677777777776 2222233445677777777777654 23
Q ss_pred cCccccccCCCcCCC-----------CccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcC
Q 038586 169 LEKDQHDEGSQNGQQ-----------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSL 237 (353)
Q Consensus 169 lp~~~~L~l~~~~~l-----------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l 237 (353)
++..+.|.+++++.. .. ++.+++..| ...+.--.+...+..|+.|||++|++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N----------------~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEAN----------------EIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcc----------------cccceecchhhhhhHHhhccccCCcc
Confidence 444445555544432 12 344555555 21111112233456678888888876
Q ss_pred cccCCCCCccccchhhhhcccCCCccceeecCCCCC-----chh-----hcCCCCCCEEEccCCCCCCCCc
Q 038586 238 DQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND-----PIE-----LLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 238 ~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i-----P~~-----l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
-.... ..-++ .++.|+.|+++...+ |+. ....++|++|+++.|++...+.
T Consensus 259 i~~~~---~~~~~--------~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 259 IDFDQ---GYKVG--------TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccc---ccccc--------cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 43210 02344 667777777776322 222 2356788888888888866665
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=61.48 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=39.7
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEc
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVER 232 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~L 232 (353)
++|++|++++|++...-+.. +..+.. ++++++++| .++...|..|.++++|++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~-------f~~l~~-L~~L~l~~N----------------~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS-------FSNLPN-LETLDLSNN----------------NLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEECTTT-------TTTGTT-ESEEEETSS----------------SESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCccCHHH-------HcCCCC-CCEeEccCC----------------ccCccCHHHHcCCCCCCEEeC
Confidence 45677777777766433344 555555 677777777 665555666777777777777
Q ss_pred ccCcC
Q 038586 233 YSSSL 237 (353)
Q Consensus 233 s~N~l 237 (353)
++|+|
T Consensus 57 ~~N~l 61 (61)
T PF13855_consen 57 SNNNL 61 (61)
T ss_dssp TSSSB
T ss_pred cCCcC
Confidence 77764
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-06 Score=91.99 Aligned_cols=207 Identities=11% Similarity=0.069 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCccccccCC-cccccHH-HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKIL-KGTISSA-LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS 148 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l-~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~ 148 (353)
.++.|-+.+ |.. ...++.. |..+ +.| ++|||++|.=-+. +|+.+++|-+|++|+++. ...+|..
T Consensus 546 ~L~tLll~~--------n~~~l~~is~~ff~~m-~~L--rVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 546 KLRTLLLQR--------NSDWLLEISGEFFRSL-PLL--RVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred ccceEEEee--------cchhhhhcCHHHHhhC-cce--EEEECCCCCccCc-CChHHhhhhhhhcccccCCCccccchH
Confidence 567777777 541 2356655 4457 999 9999998765555 999999999999999999 7789999
Q ss_pred CCCCCCCCEEEccCccccee-------cCccccccCCCcC------------CCCccccceeccCCcC---CCCCCCCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNG------------QQGAEAEAVCIQHNQA---NDIPCSSNN 206 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~------------~l~~~l~~l~l~~N~l---~~i~~~~~~ 206 (353)
+++|.+|.+|++.++..... ++.+++|.+..-. .+.. ++.+....... .++.. ..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~-L~~ls~~~~s~~~~e~l~~--~~ 690 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH-LENLSITISSVLLLEDLLG--MT 690 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc-hhhheeecchhHhHhhhhh--hH
Confidence 99999999999987764322 3444555443322 1111 11111111100 00000 00
Q ss_pred Ccc----ccc----eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhc-ccCCCccceeecCCCCCchhh
Q 038586 207 NVQ----TVE----FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQN-KQQEAVEEEALLAQQNDPIEL 277 (353)
Q Consensus 207 ~l~----~~~----l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~iP~~l 277 (353)
.+. ... -.-..+.++..+.+|+.|.+.++.+..... .......... +..+..+...+......+.+.
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~----~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI----EWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc----ccccccchhhhHHHHHHHHhhccccccccchh
Confidence 000 000 112456677888999999999998764322 1111000000 001112222222224444555
Q ss_pred cCCCCCCEEEccCCCC--CCCCc
Q 038586 278 LCLDNILEIVESEVEI--DSLPD 298 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l--~~iP~ 298 (353)
...++|+.|.+..... ..+|.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred hccCcccEEEEecccccccCCCH
Confidence 5568888999888877 44443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-07 Score=94.13 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=78.8
Q ss_pred ccccccEEEeecCC--CCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 105 NCMIYDIWTLVTIN--FGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~--l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
+.| ++|-+..|. +... .+++|..|+.|++|||++ .+.+|.++++|-+|++|++++..+. .+|..
T Consensus 545 ~~L--~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~------- 613 (889)
T KOG4658|consen 545 PKL--RTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG------- 613 (889)
T ss_pred Ccc--ceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH-------
Confidence 456 888999886 5553 455688999999999996 8899999999999999999999988 78877
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCc
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~ 236 (353)
+..+.. +.+|++..+ .....+|.....|++|++|.+....
T Consensus 614 l~~Lk~-L~~Lnl~~~----------------~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 LGNLKK-LIYLNLEVT----------------GRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHh-hheeccccc----------------cccccccchhhhcccccEEEeeccc
Confidence 666666 777777766 3222334445556777777765543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-07 Score=85.93 Aligned_cols=188 Identities=13% Similarity=0.014 Sum_probs=103.3
Q ss_pred ccccccEEEeecCCCCCCCCCcc----cCCCCCCcEEeccC--CCCC--------------CCCCCCCCCCCEEEccCcc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEF----VGSLSKLSLNTVDH--QGEI--------------IHSVPEYPTLFDVEGYMAS 164 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~----~~~L~~L~~L~Ls~--~~~l--------------P~~l~~L~~L~~L~Ls~N~ 164 (353)
++| +++|||.|.|... .++. +.+++.|+.|.|.+ .|+. -...+.-++|+++..++|+
T Consensus 92 ~~L--~~ldLSDNA~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 92 PKL--QKLDLSDNAFGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred Cce--eEeeccccccCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 467 8888888887655 3333 44677888888877 2221 1224455677777777777
Q ss_pred ccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee--eCCcchhccCCCCEEEcccCcCc
Q 038586 165 LVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG--EMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 165 l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g--~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+... +... +..... ++.+.++.|.+ .-.| .+-..+..+++|+.|||.+|-|+
T Consensus 169 len~ga~~~A~~-------~~~~~~-leevr~~qN~I--------------~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEA-------FQSHPT-LEEVRLSQNGI--------------RPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHH-------HHhccc-cceEEEecccc--------------cCchhHHHHHHHHhCCcceeeecccchhh
Confidence 5410 0001 111222 45555555511 1111 12345677888999999999875
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC------CCC--chhhc-CCCCCCEEEccCCCCCC-----CCccccccc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ------QND--PIELL-CLDNILEIVESEVEIDS-----LPDRLVFDV 304 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~i--P~~l~-~l~~L~~L~Ls~N~l~~-----iP~~~~~~~ 304 (353)
..-..-....+. .+++|+++++++ |.+ -..+. ..++|++|.+.+|.+.. +-. ....
T Consensus 227 ~egs~~LakaL~--------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~e 296 (382)
T KOG1909|consen 227 LEGSVALAKALS--------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAE 296 (382)
T ss_pred hHHHHHHHHHhc--------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhc
Confidence 311100002233 677888888887 222 12222 35788888888888821 112 3445
Q ss_pred CcccchhccccCCCccccccccc
Q 038586 305 REFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 305 l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
.+.|..|+.-.+...+.|..+..
T Consensus 297 k~dL~kLnLngN~l~e~de~i~e 319 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLGEKDEGIDE 319 (382)
T ss_pred chhhHHhcCCcccccccchhHHH
Confidence 66677777655555444444433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-06 Score=82.28 Aligned_cols=163 Identities=11% Similarity=0.000 Sum_probs=84.1
Q ss_pred ccccccEEEeecCCCCCCCCC--cccCCCCCCcEEeccC-CCCCCC---CCCCCCCCCEEEccCcccce--------ecC
Q 038586 105 NCMIYDIWTLVTINFGGIPVP--EFVGSLSKLSLNTVDH-QGEIIH---SVPEYPTLFDVEGYMASLVQ--------ILE 170 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P--~~~~~L~~L~~L~Ls~-~~~lP~---~l~~L~~L~~L~Ls~N~l~g--------~lp 170 (353)
+++ +.||||.|-|... .| .....|++|+.|+|+. .-..|. .-..++.|+.|.|+.+.++. ..|
T Consensus 146 ~~v--~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 146 PNV--RDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred Ccc--eeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 555 5555555555443 22 1233555555555555 111110 01234455555555555442 345
Q ss_pred ccccccCCCcC----------CCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCccc
Q 038586 171 KDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 171 ~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
.+..|++..|. .+.. +++|+|++|++-+.+ ++ ...+.++.|..|+++.+.+...
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~----------~~-----~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFD----------QG-----YKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhH-HhhccccCCcccccc----------cc-----cccccccchhhhhccccCcchh
Confidence 55555555552 1223 678899988554433 11 2345667777788887776532
Q ss_pred -CCCCCccccchhhhhcccCCCccceeecCCCCC---c--hhhcCCCCCCEEEccCCCC
Q 038586 241 -LESERTEDHGDAAIQNKQQEAVEEEALLAQQND---P--IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 241 -~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i---P--~~l~~l~~L~~L~Ls~N~l 293 (353)
.| +.+ ....-...++|++|++....| + ..+..+++|+.|....|.+
T Consensus 287 ~~~-----d~~--s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 287 AEP-----DVE--SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCC-----Ccc--chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 12 110 000001566788888877444 2 1344567777788777877
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-06 Score=84.59 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=19.3
Q ss_pred cceeecCCCC---CchhhcCCCCCCEEEccCCCCC
Q 038586 263 EEEALLAQQN---DPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 263 L~~L~L~~~~---iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
|+.+++++.. ++..+..+.++..+++.+|++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 5666666622 2244556667777777777763
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.2e-06 Score=79.59 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=84.2
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQ 182 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~ 182 (353)
..+ +.+++..|.+.. +-..++.+++|+.|++.. ...+...+..+++|++|++++|.++. +... ..
T Consensus 72 ~~l--~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~l--------~~ 138 (414)
T KOG0531|consen 72 TSL--KELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEGL--------ST 138 (414)
T ss_pred HhH--Hhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccch--------hh
Confidence 444 555566666654 233355666666666666 44444335566666666666666652 1111 12
Q ss_pred CCccccceeccCCcCCCCCCCC-CCCcccc-----ceeeeCCcc-hhccCCCCEEEcccCcCcccCCCCCccccchhhhh
Q 038586 183 QGAEAEAVCIQHNQANDIPCSS-NNNVQTV-----EFEGEMEHS-LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQ 255 (353)
Q Consensus 183 l~~~l~~l~l~~N~l~~i~~~~-~~~l~~~-----~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~ 255 (353)
+.. ++.|++.+|+++.++... ...++.. ++.. +... ...+.+++.+++.+|.+...-. +.
T Consensus 139 l~~-L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~----- 205 (414)
T KOG0531|consen 139 LTL-LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG------LD----- 205 (414)
T ss_pred ccc-hhhheeccCcchhccCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc------hH-----
Confidence 222 455555555443332111 0000000 1111 0100 2444555555555555432111 11
Q ss_pred cccCCCccceeecCCCCCch--hhcCCCC--CCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 256 NKQQEAVEEEALLAQQNDPI--ELLCLDN--ILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 256 ~~~~l~~L~~L~L~~~~iP~--~l~~l~~--L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.+..+..+++....+.. .+..+.. |+.+++++|.+..+|. .+..+.++..+|...+
T Consensus 206 ---~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~--~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 206 ---LLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE--GLENLKNLPVLDLSSN 265 (414)
T ss_pred ---HHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc--cccccccccccchhhc
Confidence 12222222333311111 1122222 8899999999977755 5666677777775443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=68.43 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
+.+..+ .++ ++|++++|.++. +|. + -.+|+.|.+++ ...+|..+. ++|++|++++|.....+|..
T Consensus 46 ~r~~~~-~~l--~~L~Is~c~L~s--LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 46 PQIEEA-RAS--GRLYIKDCDIES--LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHHh-cCC--CEEEeCCCCCcc--cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 335556 778 888888887776 562 1 23588888876 455565442 57888888887333355554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.4e-06 Score=66.90 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
-+++.++|++ |.+. .+|+.|...|+.+ +.|+|++|.++. +|..+..++.|+.|++++ ....|.-+
T Consensus 53 ~el~~i~ls~--------N~fk-~fp~kft~kf~t~--t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 53 YELTKISLSD--------NGFK-KFPKKFTIKFPTA--TTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred ceEEEEeccc--------chhh-hCCHHHhhccchh--hhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHH
Confidence 4677888888 7776 6777776654677 888888888887 688888888888888887 66667767
Q ss_pred CCCCCCCEEEccCcccc
Q 038586 150 PEYPTLFDVEGYMASLV 166 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~ 166 (353)
..|.+|.+||..+|...
T Consensus 120 ~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARA 136 (177)
T ss_pred HHHHhHHHhcCCCCccc
Confidence 77777777777777654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.4e-05 Score=48.77 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=14.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEecc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVD 140 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls 140 (353)
++|++++|.|+. +|+.+++|++|++|+++
T Consensus 4 ~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 4 EELDLSNNQITD--LPPELSNLPNLETLNLS 32 (44)
T ss_dssp SEEEETSSS-SS--HGGHGTTCTTSSEEEET
T ss_pred eEEEccCCCCcc--cCchHhCCCCCCEEEec
Confidence 666777766665 45444444444444443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=9.7e-05 Score=67.45 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCCccceeecCCCCCc-----hhhcCCCCCCEEEccCCCC-CCC----CcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQQNDP-----IELLCLDNILEIVESEVEI-DSL----PDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~~~iP-----~~l~~l~~L~~L~Ls~N~l-~~i----P~~~~~~~l~~L~~Ld~ 313 (353)
..+.+.-|+|+...|- .++..++.|..|.+++|.+ .++ +..+.++.+++++-|+-
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 4455556666654333 2456778888888888887 544 22234566666666553
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=1.2e-05 Score=65.34 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~i 296 (353)
.+.....|+..+|++|.|.. +| ..+. .+.+.++.+++++ ..+|.+++.++.|+.|+++.|.+...
T Consensus 48 ~l~~~~el~~i~ls~N~fk~-fp----~kft-------~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKK-FP----KKFT-------IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HHhCCceEEEEecccchhhh-CC----HHHh-------hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc
Confidence 34445667777888888864 44 3333 1455777888877 67788888888888888888888777
Q ss_pred CcccccccCcccchhccccC
Q 038586 297 PDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 297 P~~~~~~~l~~L~~Ld~~~~ 316 (353)
|. ++..+.++..||.-.+
T Consensus 116 p~--vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 116 PR--VIAPLIKLDMLDSPEN 133 (177)
T ss_pred hH--HHHHHHhHHHhcCCCC
Confidence 77 6666666666665333
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=4.3e-05 Score=70.96 Aligned_cols=190 Identities=13% Similarity=0.058 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCCccccccCCcc----cccHHHHHhhccccccEEEeecCCCCCC---CCCcc-------cCCCCCCcEE
Q 038586 72 SHFKVLNLRSSNDENARRKILKG----TISSALLLCLNCMIYDIWTLVTINFGGI---PVPEF-------VGSLSKLSLN 137 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g----~lp~~l~~L~~~L~~~~L~Ls~N~l~~~---~~P~~-------~~~L~~L~~L 137 (353)
..++.|+|++ |.+.- .+.+.+.+. +.| +..++|+- ++|. ++|+. +-..++|++|
T Consensus 30 ~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~-~~L--~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 30 DSLTKLDLSG--------NTFGTEAARAIAKVLASK-KEL--REVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred CceEEEeccC--------CchhHHHHHHHHHHHhhc-ccc--eeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3678888888 66532 233455666 677 77777653 2221 13432 3345677777
Q ss_pred eccC--CCC-CCC----CCCCCCCCCEEEccCcccce----ecC-ccccccCCCcCCCCccccceeccCCcCCCCCCCCC
Q 038586 138 TVDH--QGE-IIH----SVPEYPTLFDVEGYMASLVQ----ILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN 205 (353)
Q Consensus 138 ~Ls~--~~~-lP~----~l~~L~~L~~L~Ls~N~l~g----~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~ 205 (353)
+||. .|+ -++ -+..++.|++|.|.+|-+.- .+. .++++..+.-......++.+..++|++.+-+.
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--- 174 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--- 174 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH---
Confidence 7777 222 111 24456777777777766531 111 11222222222222236777777773322111
Q ss_pred CCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC--------CCchhh
Q 038586 206 NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ--------NDPIEL 277 (353)
Q Consensus 206 ~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--------~iP~~l 277 (353)
..+-..|...+.|+.+.++.|.|. | ..+ .........+++|+.|+|.+. .+-..+
T Consensus 175 ---------~~~A~~~~~~~~leevr~~qN~I~---~----eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 175 ---------TALAEAFQSHPTLEEVRLSQNGIR---P----EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ---------HHHHHHHHhccccceEEEeccccc---C----chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 123345666778888999888763 2 111 111223337888999988881 223345
Q ss_pred cCCCCCCEEEccCCCC
Q 038586 278 LCLDNILEIVESEVEI 293 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l 293 (353)
..+++|++|+++++.+
T Consensus 238 ~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLL 253 (382)
T ss_pred cccchheeeccccccc
Confidence 6678888999998888
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00022 Score=46.57 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=17.3
Q ss_pred CCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccc
Q 038586 133 KLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
+|++|++++ ...+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555 4445555555555555555555544
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=1.5e-05 Score=80.30 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=54.3
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~ 166 (353)
|.++ .+..++.-+ ++| +.|||++|+++.. +.+..+++|++|||++ ...+|.- ...+ +|+.|.+.+|.++
T Consensus 174 N~L~-~mD~SLqll-~al--e~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 174 NRLV-LMDESLQLL-PAL--ESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT 245 (1096)
T ss_pred hhHH-hHHHHHHHH-HHh--hhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH
Confidence 7776 677788888 999 9999999999874 3788899999999999 6666642 2223 3888999998876
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=1.4e-05 Score=80.44 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=84.9
Q ss_pred cHHHHHhhccccccEEEeecCCCCCCCCCcccCCC-CCCcEEeccC------------CCCCCCCCCCCCCCCEEEccCc
Q 038586 97 SSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSL-SKLSLNTVDH------------QGEIIHSVPEYPTLFDVEGYMA 163 (353)
Q Consensus 97 p~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L-~~L~~L~Ls~------------~~~lP~~l~~L~~L~~L~Ls~N 163 (353)
|-+++.+ ..| ++|.|.+..+... ..+..+ .+|++|.=.+ .|.+-.++ .-.+|...+.++|
T Consensus 102 pi~ifpF-~sL--r~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 102 PISIFPF-RSL--RVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYN 174 (1096)
T ss_pred Cceeccc-cce--eeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchh
Confidence 4455666 777 8888887776542 111111 1233332222 33332221 1225666777777
Q ss_pred ccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCC
Q 038586 164 SLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 164 ~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
.+. .+... ...+.. ++.|+|++| +++.. ..+..+++|++|||++|.+.. +|.
T Consensus 175 ~L~-~mD~S-------Lqll~a-le~LnLshN----------------k~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~ 226 (1096)
T KOG1859|consen 175 RLV-LMDES-------LQLLPA-LESLNLSHN----------------KFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQ 226 (1096)
T ss_pred hHH-hHHHH-------HHHHHH-hhhhccchh----------------hhhhh--HHHHhcccccccccccchhcc-ccc
Confidence 766 22222 233344 677888888 44422 256778888888888888864 441
Q ss_pred CCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCCCCCEEEccCCCC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~~L~~L~Ls~N~l 293 (353)
.... .+. |..|.+++..+- ..+.+|++|+.||+++|-|
T Consensus 227 ---l~~~--------gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 227 ---LSMV--------GCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ---cchh--------hhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 1111 333 788888773332 2466788888888888877
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=7.9e-05 Score=68.05 Aligned_cols=58 Identities=7% Similarity=-0.043 Sum_probs=39.7
Q ss_pred hccCCCCEEEcccCcC-cccCCCCCccccchhhhhcccCCCccceeecCC--CCCchh---hcCCCCCCEEEccCC
Q 038586 222 SEVYDIFDVERYSSSL-DQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPIE---LLCLDNILEIVESEV 291 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l-~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~~---l~~l~~L~~L~Ls~N 291 (353)
...++|.+||||+|.. +...- ..+- +++.|+++.++. +.+|.. +...+.|.+||+.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~----~~~~--------kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF----QEFF--------KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHH----HHHH--------hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4678899999998853 21111 2333 788899999988 666764 456788999886543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00069 Score=70.27 Aligned_cols=134 Identities=8% Similarity=0.005 Sum_probs=71.2
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC----CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH----QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~----~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
.+| ++||+++...-...-|..++ -+|+|+.|.+++ ...+-.-..++++|..||+|+.+++ . +++
T Consensus 122 ~nL--~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-n--------l~G 190 (699)
T KOG3665|consen 122 QNL--QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-N--------LSG 190 (699)
T ss_pred Hhh--hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-C--------cHH
Confidence 345 77777775432221344444 467888888877 2222233456778888888877765 1 122
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhccc
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQ 258 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 258 (353)
.+.+.. |+.|.+.+= .+.. ..-..+.+|++|+.||+|..+.... + .+-...++.+.
T Consensus 191 IS~Lkn-Lq~L~mrnL----------------e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~-----~ii~qYlec~~ 247 (699)
T KOG3665|consen 191 ISRLKN-LQVLSMRNL----------------EFESYQDLIDLFNLKKLRVLDISRDKNNDD-T-----KIIEQYLECGM 247 (699)
T ss_pred Hhcccc-HHHHhccCC----------------CCCchhhHHHHhcccCCCeeeccccccccc-h-----HHHHHHHHhcc
Confidence 334444 444443332 1111 1123566788888888887765321 1 11122234444
Q ss_pred CCCccceeecCCCC
Q 038586 259 QEAVEEEALLAQQN 272 (353)
Q Consensus 259 ~l~~L~~L~L~~~~ 272 (353)
.++.|+.||.++..
T Consensus 248 ~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 248 VLPELRFLDCSGTD 261 (699)
T ss_pred cCccccEEecCCcc
Confidence 56666666666633
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00051 Score=71.22 Aligned_cols=140 Identities=7% Similarity=0.053 Sum_probs=82.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
++..||+++. ..+...-|..++.+++.| +.|.+++=.+...++-....++++|..||+|+ ...+ ..++
T Consensus 123 nL~~LdI~G~-------~~~s~~W~~kig~~LPsL--~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGS-------ELFSNGWPKKIGTMLPSL--RSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred hhhhcCcccc-------chhhccHHHHHhhhCccc--ceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 5667777772 223333445677666899 99998887765432344456888999999988 3333 5678
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
+|++|+.|.+.+=.+.. +-++...-.+.. |+.||+|..+..+-+ .+...--+.-..+++|+.|
T Consensus 193 ~LknLq~L~mrnLe~e~------~~~l~~LF~L~~-L~vLDIS~~~~~~~~----------~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFES------YQDLIDLFNLKK-LRVLDISRDKNNDDT----------KIIEQYLECGMVLPELRFL 255 (699)
T ss_pred ccccHHHHhccCCCCCc------hhhHHHHhcccC-CCeeeccccccccch----------HHHHHHHHhcccCccccEE
Confidence 88888888876655541 111111223444 666666665222111 0000001122346789999
Q ss_pred EcccCcCcc
Q 038586 231 ERYSSSLDQ 239 (353)
Q Consensus 231 ~Ls~N~l~g 239 (353)
|.|+..+++
T Consensus 256 DcSgTdi~~ 264 (699)
T KOG3665|consen 256 DCSGTDINE 264 (699)
T ss_pred ecCCcchhH
Confidence 999887764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.7e-05 Score=72.26 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCCccceeecCC-----CCCchhhcCCCCCCEEEccCCCCCCCCc-ccccccCcccchhccc
Q 038586 259 QEAVEEEALLAQ-----QNDPIELLCLDNILEIVESEVEIDSLPD-RLVFDVREFLSELDQI 314 (353)
Q Consensus 259 ~l~~L~~L~L~~-----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~-~~~~~~l~~L~~Ld~~ 314 (353)
.++.|.+|||++ ...-.++..++.|++|.++.+.. -+|. .+.+...+.|.+||..
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-CChHHeeeeccCcceEEEEec
Confidence 677788888877 22223566777788888877764 1122 1145666777777753
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0033 Score=57.00 Aligned_cols=64 Identities=6% Similarity=-0.123 Sum_probs=37.8
Q ss_pred hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC------CC--Cchhh--cCCCCCCEEEccCC
Q 038586 222 SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ------QN--DPIEL--LCLDNILEIVESEV 291 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~--iP~~l--~~l~~L~~L~Ls~N 291 (353)
..+++|+.||+.+|-|+-.-..-....+. .++.|++|.+.+ |. +-..+ ...++|..|-..+|
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~--------~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALC--------EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhc--------ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 45678999999999886321100001222 455688888776 11 11111 13478889999999
Q ss_pred CC
Q 038586 292 EI 293 (353)
Q Consensus 292 ~l 293 (353)
..
T Consensus 283 e~ 284 (388)
T COG5238 283 ER 284 (388)
T ss_pred hh
Confidence 87
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.036 Score=53.82 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=33.8
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
.+.++++|++++ ...+|. + ..+|+.|.++++.-...+|.. . ... ++.|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-------L--P~n-Le~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-------I--PEG-LEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-------h--hhh-hhheEccCc
Confidence 467888999998 666772 2 246999999874422344432 1 122 777888777
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.0042 Score=56.37 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=28.0
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCC--------CchhhcCCCCCCEEEccCCCC
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQN--------DPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--------iP~~l~~l~~L~~L~Ls~N~l 293 (353)
.+|+.+.+..|.| -| ..+..........+.+|+.|++.+.. +-..+..++.|++|.+.+|-+
T Consensus 185 ~~lk~vki~qNgI---rp----egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 185 ENLKEVKIQQNGI---RP----EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred cCceeEEeeecCc---Cc----chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 4566666666644 23 22222222222245555555555511 111233344555555555555
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.018 Score=50.07 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----CCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-----QGEIIHS 148 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-----~~~lP~~ 148 (353)
...+||++ |.+. .++. |..+ +.| ..|.|++|+|+.+ -|.--.-+++|+.|.|.+ .+.+- -
T Consensus 44 ~d~iDLtd--------Ndl~-~l~~-lp~l-~rL--~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~-p 108 (233)
T KOG1644|consen 44 FDAIDLTD--------NDLR-KLDN-LPHL-PRL--HTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLD-P 108 (233)
T ss_pred cceecccc--------cchh-hccc-CCCc-ccc--ceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcc-h
Confidence 45688888 6664 3322 4456 777 8889999998885 444444567788888887 33332 2
Q ss_pred CCCCCCCCEEEccCcccce----------ecCccccccCCCc
Q 038586 149 VPEYPTLFDVEGYMASLVQ----------ILEKDQHDEGSQN 180 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g----------~lp~~~~L~l~~~ 180 (353)
+..+++|++|.+-+|..+. .+|..++||....
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5667888888888887652 4566666665554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.05 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=11.5
Q ss_pred CCCCCCCCEEEccCcccceecC
Q 038586 149 VPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
+..++.|.+|.+++|+++..-|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p 81 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDP 81 (233)
T ss_pred CCCccccceEEecCCcceeecc
Confidence 3445555555566665554333
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.0057 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.9
Q ss_pred CCCEEEccCCCCCCCCccccccc
Q 038586 282 NILEIVESEVEIDSLPDRLVFDV 304 (353)
Q Consensus 282 ~L~~L~Ls~N~l~~iP~~~~~~~ 304 (353)
+|++||+++|++..||+ .|++
T Consensus 1 ~L~~Ldls~n~l~~ip~--~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS--SFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGT--TTTT
T ss_pred CccEEECCCCcCEeCCh--hhcC
Confidence 58999999999999999 5654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.011 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.6
Q ss_pred cEEEeecCCCCCCCCCcccCCC
Q 038586 110 DIWTLVTINFGGIPVPEFVGSL 131 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L 131 (353)
++||+++|+++. +|+.|++|
T Consensus 3 ~~Ldls~n~l~~--ip~~~~~l 22 (22)
T PF00560_consen 3 EYLDLSGNNLTS--IPSSFSNL 22 (22)
T ss_dssp SEEEETSSEESE--EGTTTTT-
T ss_pred cEEECCCCcCEe--CChhhcCC
Confidence 889999999984 88877653
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.021 Score=51.40 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=9.1
Q ss_pred hccCCCCEEEcccCcCc
Q 038586 222 SEVYDIFDVERYSSSLD 238 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~ 238 (353)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 34455556666655443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.026 Score=28.74 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCCCC
Q 038586 281 DNILEIVESEVEIDSLP 297 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP 297 (353)
++|+.|++++|+|..+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998776
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.0034 Score=55.71 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC
Q 038586 71 TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS 148 (353)
Q Consensus 71 ~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~ 148 (353)
..+|+.||++. |.+. .+-..+..+ +.| ..||++.|.+.- .|..++++..++.+++.. ....|.+
T Consensus 41 ~kr~tvld~~s--------~r~v-n~~~n~s~~-t~~--~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 41 FKRVTVLDLSS--------NRLV-NLGKNFSIL-TRL--VRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred cceeeeehhhh--------hHHH-hhccchHHH-HHH--HHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCcc
Confidence 35899999999 7776 566667778 888 999999999987 799999999999998887 8889999
Q ss_pred CCCCCCCCEEEccCcccc
Q 038586 149 VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~ 166 (353)
++.++.++++++..|.|.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 999999999999998865
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.032 Score=51.40 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=54.6
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
.++++|.+|++++.. ++-.-+.+|+.|++|+++.|++...+..+. . ...+|+.+
T Consensus 73 v~elDL~~N~iSdWs--------------eI~~ile~lP~l~~LNls~N~L~s~I~~lp----~--------p~~nl~~l 126 (418)
T KOG2982|consen 73 VKELDLTGNLISDWS--------------EIGAILEQLPALTTLNLSCNSLSSDIKSLP----L--------PLKNLRVL 126 (418)
T ss_pred hhhhhcccchhccHH--------------HHHHHHhcCccceEeeccCCcCCCccccCc----c--------cccceEEE
Confidence 567788888444322 233345678999999999999975554110 2 46678888
Q ss_pred ecCCC-----CCchhhcCCCCCCEEEccCCCC
Q 038586 267 LLAQQ-----NDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 267 ~L~~~-----~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
-|.+. ..-..+..++.+++|.+|.|.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88873 3334567788888888888854
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.15 Score=46.05 Aligned_cols=82 Identities=17% Similarity=0.090 Sum_probs=53.2
Q ss_pred hhccCCCCEEEcccC--cCcccCCCCCccccchhhhhcccCCCccceeecCCC--CCch---hhcCCCCCCEEEccCCCC
Q 038586 221 LSEVYDIFDVERYSS--SLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ--NDPI---ELLCLDNILEIVESEVEI 293 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N--~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~iP~---~l~~l~~L~~L~Ls~N~l 293 (353)
+-.|++|+.|++|.| ++++.++ .... .+++|++++++++ .++. .+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~----vl~e--------~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLE----VLAE--------KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccce----ehhh--------hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445778899999999 5555444 3333 5688888888882 2233 345667788888888877
Q ss_pred CCCC--cccccccCcccchhccc
Q 038586 294 DSLP--DRLVFDVREFLSELDQI 314 (353)
Q Consensus 294 ~~iP--~~~~~~~l~~L~~Ld~~ 314 (353)
..+- ....|.-++.|+.||-.
T Consensus 129 ~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 129 TNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cccccHHHHHHHHhhhhcccccc
Confidence 3331 11256677778887754
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.19 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCCCCCc
Q 038586 280 LDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+.|+|++|+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4789999999999999988
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.19 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCCCCCc
Q 038586 280 LDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+.|+|++|+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4789999999999999988
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.049 Score=49.79 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=62.4
Q ss_pred hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCch-----hhcCCCCCCEEEccCCCC-CC
Q 038586 222 SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPI-----ELLCLDNILEIVESEVEI-DS 295 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~-----~l~~l~~L~~L~Ls~N~l-~~ 295 (353)
.+|+.|..|.||-|+|+..-| +. .++.|++|+|....|+. -+.++++|+.|.|..|.= +.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p------l~--------rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP------LQ--------RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcccceeEEeeccccccchh------HH--------HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 467889999999999986544 44 89999999999977764 356889999999999998 66
Q ss_pred CCcc---cccccCcccchhccc
Q 038586 296 LPDR---LVFDVREFLSELDQI 314 (353)
Q Consensus 296 iP~~---~~~~~l~~L~~Ld~~ 314 (353)
-+.. .++..+++|+.||..
T Consensus 104 ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred cchhHHHHHHHHcccchhccCc
Confidence 6542 256778888888853
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.8 Score=34.29 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=5.0
Q ss_pred cCCCCCCcEEeccC
Q 038586 128 VGSLSKLSLNTVDH 141 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~ 141 (353)
|..+++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 34444444444433
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=85.02 E-value=0.62 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCEEEccCCCCCCCCc
Q 038586 281 DNILEIVESEVEIDSLPD 298 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP~ 298 (353)
++|+.|++++|+|..+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468999999999999998
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=84.81 E-value=3.6 Score=32.44 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=20.0
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CCCCCCCCCEEEcc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SVPEYPTLFDVEGY 161 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l~~L~~L~~L~Ls 161 (353)
+.| +.+.+..+ +... -...|.++++++.+.+.. ...++. .+..+++|+.+++.
T Consensus 35 ~~l--~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 35 TSL--KSINFPNN-LTSI-GDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT---SEEEESST-TSCE--TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred ccc--cccccccc-cccc-ceeeeecccccccccccccccccccccccccccccccccC
Confidence 455 55555443 3332 122344444555555543 222222 23334555555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.91 E-value=0.089 Score=48.13 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc--ccCCCCCCcEEeccC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE--FVGSLSKLSLNTVDH 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~--~~~~L~~L~~L~Ls~ 141 (353)
-+..|.|+- |.++ ++.+ +..+ +.| ++|+|..|.|.. +.+ .+.++++|+.|+|..
T Consensus 42 ~lEVLsLSv--------NkIs-sL~p-l~rC-trL--kElYLRkN~I~s--ldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 42 LLEVLSLSV--------NKIS-SLAP-LQRC-TRL--KELYLRKNCIES--LDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred cceeEEeec--------cccc-cchh-HHHH-HHH--HHHHHHhccccc--HHHHHHHhcCchhhhHhhcc
Confidence 345555555 5554 3322 5555 666 666666666654 222 234566666666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 353 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-10 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 7e-07 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 32/132 (24%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSND 84
+ E L++F+ D+ L W + C + GV C + ++L S
Sbjct: 9 SLYREIHQLISFKDVLPDK-NLLPDWSSNKN---PCTFDGVTCRD--DKVTSIDLSSKPL 62
Query: 85 ENARRKILKGTISSALLLC------------LNCMIYDIW---TLVTINF------GGIP 123
+SS+LL +N + +L +++ G +
Sbjct: 63 NVGF-----SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT 117
Query: 124 VPEFVGSLSKLS 135
+GS S L
Sbjct: 118 TLTSLGSCSGLK 129
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 7e-07
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 24 RCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCC--KWRGVCCNNTTSHFKV--LNL 79
C ++K+ALL ++ + LSSW +CC W GV C+ T ++V L+L
Sbjct: 2 LCNPQDKQALLQIKKD-LGNPTTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL 57
Query: 80 RSSNDENARRKILKGT--ISSALLLCLNCMIYDIWTLVTINFGGI-----PVPEFVGSLS 132
N L I S+L L + GGI P+P + L+
Sbjct: 58 SGLN--------LPKPYPIPSSLANLPY--------LNFLYIGGINNLVGPIPPAIAKLT 101
Query: 133 KLS 135
+L
Sbjct: 102 QLH 104
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.9 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.89 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.89 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.89 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.88 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.88 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.86 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.86 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.85 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.84 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.83 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.83 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.83 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.82 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.82 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.82 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.82 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.81 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.81 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.81 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.81 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.8 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.8 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.8 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.8 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.79 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.79 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.79 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.78 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.78 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.77 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.77 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.76 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.76 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.76 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.75 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.74 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.74 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.74 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.73 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.73 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.73 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.71 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.71 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.71 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.71 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.7 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.7 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.7 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.7 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.69 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.68 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.66 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.66 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.66 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.66 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.66 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.66 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.65 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.64 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.64 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.64 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.64 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.64 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.63 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.62 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.62 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.61 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.61 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.61 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.6 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.55 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.55 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.55 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.53 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.52 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.51 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.5 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.5 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.49 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.49 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.47 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.46 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.45 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.43 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.43 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.43 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.36 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.35 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.33 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.29 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.27 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.24 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.21 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.19 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.15 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.11 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.04 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.04 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.86 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.68 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.65 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.63 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.52 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.51 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.45 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.32 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.04 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.93 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.75 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.67 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.6 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.82 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.59 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.43 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.61 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 95.55 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 95.37 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 95.1 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 94.58 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.53 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 92.54 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=273.80 Aligned_cols=253 Identities=21% Similarity=0.281 Sum_probs=212.3
Q ss_pred cCcHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCccccccCCcc--cc
Q 038586 24 RCIDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCK--WRGVCCNNTT--SHFKVLNLRSSNDENARRKILKG--TI 96 (353)
Q Consensus 24 ~~~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~l 96 (353)
.|.++|++||++||+++.+|. .+.+|. +.| ||. |.||+|+..+ ++|+.|++++ +.++| .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~----~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTD----CCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSC----TTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCC----CCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCccc
Confidence 599999999999999998876 788994 455 998 9999998654 7999999999 99999 99
Q ss_pred cHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 97 SSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 97 p~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
|+.+.++ ++| ++|++++ |.+.+. +|..|+++++|++|++++ .+.+|..++++++|++|++++|.+++.+|..
T Consensus 69 ~~~l~~l-~~L--~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 69 PSSLANL-PYL--NFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGC-TTC--SEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChhHhCC-CCC--CeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 9999999 999 9999995 999988 999999999999999998 5588999999999999999999999888776
Q ss_pred ccccCCCcCCCCccccceeccCCcCC-CCCCCC--C------CCccccceeeeCCcchhccCCCCEEEcccCcCcccCCC
Q 038586 173 QHDEGSQNGQQGAEAEAVCIQHNQAN-DIPCSS--N------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 173 ~~L~l~~~~~l~~~l~~l~l~~N~l~-~i~~~~--~------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
+..+.. ++++++++|+++ .+|... . .++...++++.+|..+..++ |++|++++|++++.+|
T Consensus 145 -------~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~- 214 (313)
T 1ogq_A 145 -------ISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS- 214 (313)
T ss_dssp -------GGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-
T ss_pred -------HhcCCC-CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-
Confidence 566666 777777777665 344211 1 12233477788888888887 9999999999988888
Q ss_pred CCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..++ .+++|+.|++++ ...++.+..+++|++|++++|++ +.+|. .+..++.|+.|+...+
T Consensus 215 ---~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 215 ---VLFG--------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ---GGCC--------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSS
T ss_pred ---HHHh--------cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCC
Confidence 7788 899999999998 33444578889999999999999 79999 8999999999986543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=275.37 Aligned_cols=273 Identities=15% Similarity=0.178 Sum_probs=210.4
Q ss_pred ccCcHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCccc---ccH
Q 038586 23 IRCIDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGT---ISS 98 (353)
Q Consensus 23 ~~~~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~---lp~ 98 (353)
..+.++|++||++||+++.||. .+++|. ++| ||.|.||+|+ .++|++|+|++ +.+.|. +|+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~----~C~w~gv~C~--~~~v~~L~L~~--------~~l~g~~~~l~~ 71 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKN----PCTFDGVTCR--DDKVTSIDLSS--------KPLNVGFSAVSS 71 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSC----GGGSTTEEEE--TTEEEEEECTT--------SCCCEEHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCC----CcCCcceEEC--CCcEEEEECCC--------CCcCCccCccCh
Confidence 4447889999999999999888 889994 566 9999999998 58999999999 899998 999
Q ss_pred HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC--CCCCCCCCCEEEccCcccceecCccc
Q 038586 99 ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH--SVPEYPTLFDVEGYMASLVQILEKDQ 173 (353)
Q Consensus 99 ~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~--~l~~L~~L~~L~Ls~N~l~g~lp~~~ 173 (353)
++.++ ++| +.++++.|.+.. +|+.++.+++|++|+|++ .+.+|. .++++++|++|++++|.+.+.+|..
T Consensus 72 ~l~~L-~~L--~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~- 145 (768)
T 3rgz_A 72 SLLSL-TGL--ESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS- 145 (768)
T ss_dssp HTTTC-TTC--CEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC-
T ss_pred hHhcc-Ccc--cccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH-
Confidence 99999 999 999998888765 678999999999999999 677888 8999999999999999998766643
Q ss_pred cccCCCc-CCCCccccceeccCCcCCCCC------CCCCCCccc-----cceeeeCCcchhccCCCCEEEcccCcCcccC
Q 038586 174 HDEGSQN-GQQGAEAEAVCIQHNQANDIP------CSSNNNVQT-----VEFEGEMEHSLSEVYDIFDVERYSSSLDQIL 241 (353)
Q Consensus 174 ~L~l~~~-~~l~~~l~~l~l~~N~l~~i~------~~~~~~l~~-----~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~ 241 (353)
. ..+.. ++++++++|+++... ......++. ..+++..|. ..+++|++|++++|++++.+
T Consensus 146 ------~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~ 216 (768)
T 3rgz_A 146 ------GGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI 216 (768)
T ss_dssp ------SCCCCTT-CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC
T ss_pred ------HhccCCC-CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC
Confidence 2 33333 555555555443321 111112221 256665553 78899999999999999888
Q ss_pred CCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccC
Q 038586 242 ESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 242 p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
| . ++ ++++|++|++++ +.+|..+..+++|++|++++|.+ +.+|. . .++.|++|+...+
T Consensus 217 ~----~-l~--------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 217 P----F-LG--------DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L--PLKSLQYLSLAEN 279 (768)
T ss_dssp C----B-CT--------TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C--CCTTCCEEECCSS
T ss_pred c----c-cc--------cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c--ccCCCCEEECcCC
Confidence 8 5 78 899999999998 56788899999999999999999 78887 3 6778888875432
Q ss_pred C--------Ccccccccccccc--cccccCCChHHH
Q 038586 317 P--------RDEECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 317 ~--------~~~~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
. ....|.+++.+.. +.+.|.+|..+.
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 1 1123566666653 556778887653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=249.60 Aligned_cols=264 Identities=11% Similarity=0.106 Sum_probs=201.1
Q ss_pred ccccCcHHHHHHHHHHHhCCC-CCCCCCCCCC-CCCCCCCCccccceEec--------CCCCcEEEEEcCCCCCcccccc
Q 038586 21 IIIRCIDEEKEALLTFEQSPV-DEYGALSSWG-REDDKRNCCKWRGVCCN--------NTTSHFKVLNLRSSNDENARRK 90 (353)
Q Consensus 21 ~~~~~~~~e~~aLl~~k~~~~-~~~~~~~~W~-~~~~~~~~C~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~ 90 (353)
....+..+|++||++||+.+. ++.+....|. ..+...++|.|.|+.|. ....+|+.|+|++ +
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n 91 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------V 91 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------S
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------C
Confidence 445567789999999999884 6665667783 11222459999999995 2346899999999 8
Q ss_pred CCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCccccee
Q 038586 91 ILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQI 168 (353)
Q Consensus 91 ~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~ 168 (353)
.++ .+|+.++++ ++| ++|+|++|.++. +|..++++++|++|+|++ ...+|..++++++|++|++++|++.+.
T Consensus 92 ~l~-~lp~~l~~l-~~L--~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 92 PLP-QFPDQAFRL-SHL--QHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp CCS-SCCSCGGGG-TTC--SEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred Cch-hcChhhhhC-CCC--CEEECCCCCccc--hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc
Confidence 988 899999999 999 999999999994 899999999999999999 668999999999999999999999988
Q ss_pred cCccc-cccC-CCcCCCCccccceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCCCCEEEcccCcCccc
Q 038586 169 LEKDQ-HDEG-SQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 169 lp~~~-~L~l-~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
+|..- ...+ ..+..+.. ++++++++|+++.+|.. ....++.+.+.+ .+|..++.+++|++|++++|++.+.
T Consensus 166 ~p~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVN-LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCSCSEEEC-CCCEEESTT-CCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cChhHhhccchhhhccCCC-CCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh
Confidence 88750 0000 01123666 88899999977766632 223333333322 3666778888888888888888777
Q ss_pred CCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 241 LESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+| ..++ .+++|+.|++++ +.+|..+..+++|++|++++|++ +.+|+ .++.++.++.++.
T Consensus 245 ~p----~~~~--------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 245 YP----PIFG--------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CC----CCTT--------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred hH----HHhc--------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 77 7777 788888888877 67777788888888888888877 88888 7777777776654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=266.84 Aligned_cols=277 Identities=16% Similarity=0.167 Sum_probs=213.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--------CCCCC-CCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCccccccCC
Q 038586 25 CIDEEKEALLTFEQSPVDEYGA--------LSSWG-REDDKRNCCKW---RGVCCNNTTSHFKVLNLRSSNDENARRKIL 92 (353)
Q Consensus 25 ~~~~e~~aLl~~k~~~~~~~~~--------~~~W~-~~~~~~~~C~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l 92 (353)
....|++||.++++++.++... ..+|. +.| ||.| .||+|+.. |||++|+|++ +++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~----~c~w~~~~GV~C~~~-~~V~~L~L~~--------~~l 93 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKE----LDMWGAQPGVSLNSN-GRVTGLSLEG--------FGA 93 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSC----GGGTTCCTTEEECTT-CCEEEEECTT--------SCC
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCC----cccccCCCCeEEcCC-CCEEEEEecC--------ccc
Confidence 3457999999999998755322 23694 556 9999 99999765 8999999999 999
Q ss_pred cccccHHHHHhhccccccEEEeecCCC-----------------------------------------------------
Q 038586 93 KGTISSALLLCLNCMIYDIWTLVTINF----------------------------------------------------- 119 (353)
Q Consensus 93 ~g~lp~~l~~L~~~L~~~~L~Ls~N~l----------------------------------------------------- 119 (353)
+|.+|++++++ ++| ++|+|++|.+
T Consensus 94 ~g~lp~~l~~L-~~L--~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 94 SGRVPDAIGQL-TEL--EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp EEEECGGGGGC-TTC--CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred CCcCChHHhcC-ccc--eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCc
Confidence 99999999999 999 9999999854
Q ss_pred -------------------------CCCCCCcccCCCCCCcEEeccC---CCC-----------------CCCCCC--CC
Q 038586 120 -------------------------GGIPVPEFVGSLSKLSLNTVDH---QGE-----------------IIHSVP--EY 152 (353)
Q Consensus 120 -------------------------~~~~~P~~~~~L~~L~~L~Ls~---~~~-----------------lP~~l~--~L 152 (353)
++ +|+.++++++|++|+|++ .+. +|..++ ++
T Consensus 171 ~~~~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 171 QQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred cccccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 33 788899999999999999 443 999999 99
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc-CCC--CCCCC--------CCC-----ccccceeee
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ-AND--IPCSS--------NNN-----VQTVEFEGE 216 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~-l~~--i~~~~--------~~~-----l~~~~l~g~ 216 (353)
++|++|++++|++.|.+|.. ++.+.. ++++++++|+ ++. +|... ... +...+++ .
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~-------l~~l~~-L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTF-------LKALPE-MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTT-------TTTCSS-CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred CCCCEEEecCCcCCccChHH-------HhcCCC-CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 99999999999999988866 555555 6666666665 443 33110 011 2222566 7
Q ss_pred CCc--chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCC-CCEEEccC
Q 038586 217 MEH--SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDN-ILEIVESE 290 (353)
Q Consensus 217 ~p~--~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~-L~~L~Ls~ 290 (353)
+|. .++++++|++|++++|+++|.+| .++ .+++|+.|++++ ..+|..+..+++ |++|++++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-----~~~--------~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-----AFG--------SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-----CCE--------EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-----hhC--------CCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 888 89999999999999999998887 466 788999999998 778888999999 99999999
Q ss_pred CCCCCCCcccccccCc--ccchhccccCCCc----c----------cccccccccccc-cccCCChHHHH
Q 038586 291 VEIDSLPDRLVFDVRE--FLSELDQIAEPRD----E----------ECGKLQAVAWEE-EMGPLPVEFLS 343 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~--~L~~Ld~~~~~~~----~----------~c~~l~~~~~~~-~~~~lp~~~~~ 343 (353)
|.+..+|. .++.++ .|+.|+...+... . .+.+++.+.... ....+|...+.
T Consensus 387 N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 387 NKLKYIPN--IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp SCCSSCCS--CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred CcCcccch--hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 99999999 676654 8888886544321 1 233555555422 23478877654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=263.72 Aligned_cols=253 Identities=14% Similarity=0.164 Sum_probs=197.0
Q ss_pred cccCcHHHHHHHHHHHhCCCCCCCCCCCCCC-C---CCCCCCccc------------cceEecCCCCcEEEEEcCCCCCc
Q 038586 22 IIRCIDEEKEALLTFEQSPVDEYGALSSWGR-E---DDKRNCCKW------------RGVCCNNTTSHFKVLNLRSSNDE 85 (353)
Q Consensus 22 ~~~~~~~e~~aLl~~k~~~~~~~~~~~~W~~-~---~~~~~~C~w------------~gv~c~~~~~~v~~L~L~~~~~~ 85 (353)
.+.+..+|++||++||+++.+| +|.. . +...++|.| .||+|+. .+||++|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 4456778999999999999876 5632 1 111223999 9999976 57999999999
Q ss_pred cccccCCcccccHHHHHhhccccccEEEe-ecCCCCCC------------------------------------------
Q 038586 86 NARRKILKGTISSALLLCLNCMIYDIWTL-VTINFGGI------------------------------------------ 122 (353)
Q Consensus 86 ~~~~~~l~g~lp~~l~~L~~~L~~~~L~L-s~N~l~~~------------------------------------------ 122 (353)
+++.|.+|+++++| ++| ++|+| ++|.++|.
T Consensus 333 ----~~L~G~ip~~l~~L-~~L--~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 333 ----FGAKGRVPDAIGQL-TEL--KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp ----TCCEEEECGGGGGC-TTC--CEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred ----CCCCCcCchHHhcc-ccc--eEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 99999999999999 999 99999 77754332
Q ss_pred ---------------------------------CCCcccCCCCCCcEEeccC---CC-----------------CCCCCC
Q 038586 123 ---------------------------------PVPEFVGSLSKLSLNTVDH---QG-----------------EIIHSV 149 (353)
Q Consensus 123 ---------------------------------~~P~~~~~L~~L~~L~Ls~---~~-----------------~lP~~l 149 (353)
.+|..|+++++|++|+|++ .+ .+|..+
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 0688899999999999999 44 299999
Q ss_pred C--CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc-CCC--CCCC---------CCCCc-----cc
Q 038586 150 P--EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ-AND--IPCS---------SNNNV-----QT 210 (353)
Q Consensus 150 ~--~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~-l~~--i~~~---------~~~~l-----~~ 210 (353)
+ ++++|++|+|++|++.|.+|.. ++.+.. ++.|++++|+ ++. +|.. ..+.+ ..
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~-------l~~L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDF-------LYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGG-------GGGCSS-CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred hhccCCCCCEEECcCCCCCccChHH-------HhCCCC-CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 8 9999999999999999888865 555555 6666666664 442 2210 01122 22
Q ss_pred cceeeeCCc--chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCC-CC
Q 038586 211 VEFEGEMEH--SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDN-IL 284 (353)
Q Consensus 211 ~~l~g~~p~--~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~-L~ 284 (353)
..++ .+|. .++++++|++|++++|+++ .+| .++ .+++|+.|++++ ..+|..+..+++ |+
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~--------~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFG--------TNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCC--------TTSEESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-----hhc--------CCCcceEEECcCCccccchHHHhhccccCC
Confidence 2566 7888 8999999999999999987 666 567 889999999998 778888888888 99
Q ss_pred EEEccCCCCCCCCcccccccCcc--cchhccccC
Q 038586 285 EIVESEVEIDSLPDRLVFDVREF--LSELDQIAE 316 (353)
Q Consensus 285 ~L~Ls~N~l~~iP~~~~~~~l~~--L~~Ld~~~~ 316 (353)
+|++++|.+..+|. .+..++. |+.|+...+
T Consensus 623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSS
T ss_pred EEECcCCCCCcCch--hhhccccCCCCEEECcCC
Confidence 99999999998998 6766654 888886544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=231.28 Aligned_cols=217 Identities=18% Similarity=0.132 Sum_probs=156.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.|++++ |.++|.+|..+..+ ++| ++|++++|.+++. +|..++.+++|++|++++ .+.+|..+
T Consensus 419 ~L~~L~Ls~--------N~l~~~~p~~l~~l-~~L--~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 419 ELVSLHLSF--------NYLSGTIPSSLGSL-SKL--RDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp TCCEEECCS--------SEEESCCCGGGGGC-TTC--CEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCEEECcC--------CcccCcccHHHhcC-CCC--CEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 567777777 66666666666666 666 6666666666655 566666666666666665 44555556
Q ss_pred CCCCCCCEEEccCcccceecC-------ccccccCCCc----------CCCCccccceeccCCcCC-CCCCCCC------
Q 038586 150 PEYPTLFDVEGYMASLVQILE-------KDQHDEGSQN----------GQQGAEAEAVCIQHNQAN-DIPCSSN------ 205 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp-------~~~~L~l~~~----------~~l~~~l~~l~l~~N~l~-~i~~~~~------ 205 (353)
+++++|++|++++|+++|.+| .+++|++++| ..+.. ++.+++++|+++ .+|....
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChHHhcccchh
Confidence 666666666666666554333 3345555544 33444 677888888776 3553110
Q ss_pred -----------------------------------------------CCccccceeeeCCcchhccCCCCEEEcccCcCc
Q 038586 206 -----------------------------------------------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 206 -----------------------------------------------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
.++....+.|.+|..++.+++|++|++++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 012225678889999999999999999999999
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
|.+| ..++ +++.|+.|++++ |.+|..++.+++|++|||++|++ |.+|. .++.++.|+.||.
T Consensus 646 g~ip----~~l~--------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~l 711 (768)
T 3rgz_A 646 GYIP----KEIG--------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDL 711 (768)
T ss_dssp SCCC----GGGG--------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGGGCCCCSEEEC
T ss_pred ccCC----HHHh--------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEEC
Confidence 9999 8999 999999999999 89999999999999999999999 89999 8999999999987
Q ss_pred ccC
Q 038586 314 IAE 316 (353)
Q Consensus 314 ~~~ 316 (353)
..+
T Consensus 712 s~N 714 (768)
T 3rgz_A 712 SNN 714 (768)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-24 Score=198.69 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=174.7
Q ss_pred CcEEEEEcC-CCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC
Q 038586 72 SHFKVLNLR-SSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~-~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~ 147 (353)
.+++.|+++ . |.+.|.+|..+.++ ++| ++|++++|.+++. +|..|.++++|++|++++ .+.+|.
T Consensus 76 ~~L~~L~L~~~--------n~l~~~~p~~l~~l-~~L--~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGI--------NNLVGPIPPAIAKL-TQL--HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp TTCSEEEEEEE--------TTEESCCCGGGGGC-TTC--SEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCeeeCCCC--------CcccccCChhHhcC-CCC--CEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 367888888 5 78899999999999 999 9999999999987 899999999999999999 668999
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCC-CCCCC------CCCccccceeeeCCcc
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND-IPCSS------NNNVQTVEFEGEMEHS 220 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~-i~~~~------~~~l~~~~l~g~~p~~ 220 (353)
.++++++|++|++++|+++|.+|.. +..+...++++++++|+++. +|... ..++....+++..|..
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDS-------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGG-------GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred HHhcCCCCCeEECcCCcccCcCCHH-------HhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHH
Confidence 9999999999999999999888865 55554226666666666652 33210 1122333788889999
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~ 295 (353)
+..+++|++|++++|++++.+| . ++ .+++|++|++++ +.+|..+..+++|++|++++|++ +.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~----~-~~--------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLG----K-VG--------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGG----G-CC--------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred HhcCCCCCEEECCCCceeeecC----c-cc--------ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9999999999999999998777 3 66 789999999998 68899999999999999999999 89
Q ss_pred CCcccccccCcccchhccccCC
Q 038586 296 LPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
+|. . +.++.|+.++...++
T Consensus 284 ip~--~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQ--G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCC--S-TTGGGSCGGGTCSSS
T ss_pred CCC--C-ccccccChHHhcCCC
Confidence 998 4 778888888775554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=188.03 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=180.0
Q ss_pred CCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEE
Q 038586 58 NCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLN 137 (353)
Q Consensus 58 ~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L 137 (353)
++|.|.|+.|.-. ++++.+++++ ++++ .+|..+ . ..+ ++|++++|.+++. .+..|.++++|++|
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L 66 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSS--------KKLT-AIPSNI--P-ADT--KKLDLQSNKLSSL-PSKAFHRLTKLRLL 66 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTT--------SCCS-SCCSCC--C-TTC--SEEECCSSCCSCC-CTTSSSSCTTCCEE
T ss_pred ccCCCCCCCCEeC-CCCCEEEccC--------CCCC-ccCCCC--C-CCC--CEEECcCCCCCee-CHHHhcCCCCCCEE
Confidence 4999999998532 3567899999 8887 577643 2 678 9999999999986 55689999999999
Q ss_pred eccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee
Q 038586 138 TVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 138 ~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
++++ ...+|.. +.++++|++|++++|++.+..+.. +..+.. ++++++++| +++
T Consensus 67 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~ 122 (270)
T 2o6q_A 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-------FDQLVN-LAELRLDRN----------------QLK 122 (270)
T ss_dssp ECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT-------TTTCSS-CCEEECCSS----------------CCC
T ss_pred ECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH-------cccccC-CCEEECCCC----------------ccC
Confidence 9998 6677765 578999999999999998655555 566777 999999999 666
Q ss_pred eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEccC
Q 038586 215 GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESE 290 (353)
Q Consensus 215 g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~ 290 (353)
+..+..|..+++|++|++++|++++..+ ..++ .+++|++|++++ ..+|. .+..+++|++|++++
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFD--------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCH----hHcc--------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 6667778999999999999999987666 5677 899999999998 55554 588899999999999
Q ss_pred CCCCCCCcccccccCcccchhccccCCCccccccccc
Q 038586 291 VEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
|++..+|+. .|..++.|+.|+...++..+.|..+..
T Consensus 191 N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 226 (270)
T 2o6q_A 191 NQLKRVPEG-AFDSLEKLKMLQLQENPWDCTCNGIIY 226 (270)
T ss_dssp SCCSCCCTT-TTTTCTTCCEEECCSSCBCCSSSSSHH
T ss_pred CcCCcCCHH-HhccccCCCEEEecCCCeeCCCccHHH
Confidence 999777662 588899999999999999999975433
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=193.04 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=174.0
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHH-HHHhhccccccEEEeecCCCCCCC-CCcc
Q 038586 59 CCKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSA-LLLCLNCMIYDIWTLVTINFGGIP-VPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~-~P~~ 127 (353)
.|.|.+|.|+.. ..+++.|++++ |.++ .+|+. +.++ ++| ++|++++|.++... .|..
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~--------n~l~-~i~~~~~~~l-~~L--~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES--------NKLQ-SLPHGVFDKL-TQL--TKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCS--------SCCC-CCCTTTTTTC-TTC--SEEECCSSCCCEEEEEEHH
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCC--------CccC-ccCHhHhhcc-ccC--CEEECCCCccCcccCcccc
Confidence 378999999642 24789999999 7777 56653 5677 888 88888888887420 2566
Q ss_pred cCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecC-ccccccCCCcCCCCccccceeccCCcCCCCCCC-
Q 038586 128 VGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS- 203 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~- 203 (353)
+..+++|++|++++ ...+|..+..+++|++|++++|++++..+ .. +..+.. ++++++++|++..++..
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~l~~-L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-------FLSLRN-LIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTT-------TTTCTT-CCEEECTTSCCEECSTTT
T ss_pred cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchh-------hhhccC-CCEEECCCCcCCccchhh
Confidence 66788888888887 55677777778888888888887764322 12 333344 55555555554432211
Q ss_pred --CCCCcccc-----ceee-eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CC
Q 038586 204 --SNNNVQTV-----EFEG-EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QN 272 (353)
Q Consensus 204 --~~~~l~~~-----~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~ 272 (353)
....++.+ .+++ .+|..+..+++|++|++++|++++..| ..++ .+++|+.|++++ ..
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTSCCSB
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH----HHhc--------CCCCCCEEECCCCccCc
Confidence 11222222 5555 578889999999999999999998888 7888 899999999998 33
Q ss_pred Cc-hhhcCCCCCCEEEccCCCC-CCCCcccccccC-cccchhccccCCCcccccccccccc
Q 038586 273 DP-IELLCLDNILEIVESEVEI-DSLPDRLVFDVR-EFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 273 iP-~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l-~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+| ..+..+++|++|++++|++ +..|. .+..+ +.|+.|+...++..+.|...+...|
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred cChhhccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 44 4688899999999999999 67777 78887 4899999999998888886555555
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=202.44 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=181.1
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ..+++.|+|++ |++++..|..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLME--------NNIQMIQADTFRHL-HHL--EVLQLGRNSIRQI-EVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CTTTTTTCT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcC--------CcCceECHHHcCCC-CCC--CEEECCCCccCCc-ChhhccCcc
Confidence 567777532 24789999999 99998778889999 999 9999999999997 678899999
Q ss_pred CCcEEeccC--CCCCCCC-CCCCCCCCEEEccCccccee-------cCccccccCCCc-----------CCCCcccccee
Q 038586 133 KLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQN-----------GQQGAEAEAVC 191 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~-----------~~l~~~l~~l~ 191 (353)
+|++|+|++ ...+|+. +.++++|++|++++|++++. ++.+++|+++++ ..+.. +++|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEE
Confidence 999999999 6666654 88899999999999998853 344556666542 22333 55666
Q ss_pred ccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC-
Q 038586 192 IQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ- 270 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 270 (353)
+++| .+++ +| .+..+++|++|++++|++++..| ..+. ++++|+.|++++
T Consensus 203 L~~n----------------~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~n 252 (452)
T 3zyi_A 203 LGMC----------------NIKD-MP-NLTPLVGLEELEMSGNHFPEIRP----GSFH--------GLSSLKKLWVMNS 252 (452)
T ss_dssp CTTS----------------CCSS-CC-CCTTCTTCCEEECTTSCCSEECG----GGGT--------TCTTCCEEECTTS
T ss_pred CCCC----------------cccc-cc-cccccccccEEECcCCcCcccCc----cccc--------CccCCCEEEeCCC
Confidence 6666 3432 23 47788999999999999999888 8888 999999999998
Q ss_pred ---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 271 ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 271 ---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..|..+..+++|++|+|++|++..+|+. .|..+++|+.|+...++..++|...+...|
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-SSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChH-HhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 33466788999999999999999766652 688899999999999999999987665555
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-23 Score=188.22 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=178.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCC-CC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEI-IH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~l-P~ 147 (353)
.+++.|++++ +.+++..+..+..+ ++| ++|++++|.+++. .|..|.++++|++|++++ .+.+ |.
T Consensus 32 ~~l~~L~l~~--------n~i~~~~~~~~~~~-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHG--------NRISHVPAASFRAC-RNL--TILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TTCSEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCceEEEeeC--------CcCCccCHHHcccC-CCC--CEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4789999999 89986666678888 999 9999999999986 688899999999999998 4555 66
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+..+++|++|++++|.+++..|.. +..+.. ++++++++| ++++..+..++.+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGL-------FRGLAA-LQYLYLQDN----------------ALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhH-------hhCCcC-CCEEECCCC----------------cccccCHhHhccCCCc
Confidence 7899999999999999999776766 677777 999999999 6665556678899999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLVFD 303 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~ 303 (353)
++|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+++|++|++++|++..+|+. .+.
T Consensus 156 ~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 222 (285)
T 1ozn_A 156 THLFLHGNRISSVPE----RAFR--------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALA 222 (285)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHT
T ss_pred cEEECCCCcccccCH----HHhc--------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-Hcc
Confidence 999999999987666 6677 899999999998 34477889999999999999999666651 588
Q ss_pred cCcccchhccccCCCcccccccccccc
Q 038586 304 VREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 304 ~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.++.|+.|+...++..+.|...+...|
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred cCcccCEEeccCCCccCCCCcHHHHHH
Confidence 999999999999999888987666555
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=198.20 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=142.4
Q ss_pred Cccccc--eEecCCC--------CcEEEEEcCCCCC----------------ccccccCCccccc-HHHHHhhccccccE
Q 038586 59 CCKWRG--VCCNNTT--------SHFKVLNLRSSND----------------ENARRKILKGTIS-SALLLCLNCMIYDI 111 (353)
Q Consensus 59 ~C~w~g--v~c~~~~--------~~v~~L~L~~~~~----------------~~~~~~~l~g~lp-~~l~~L~~~L~~~~ 111 (353)
.|.|.+ |.|+... .+++.|+|+++.+ ...+.|.+.+.++ ..|..+ ++| ++
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L--~~ 83 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSL--II 83 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTC--CE
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccC--CE
Confidence 455554 6665321 4577777777655 2334456655664 357777 888 88
Q ss_pred EEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC--CCCCCCCCEEEccCcccceec--------CccccccCC
Q 038586 112 WTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS--VPEYPTLFDVEGYMASLVQIL--------EKDQHDEGS 178 (353)
Q Consensus 112 L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~--l~~L~~L~~L~Ls~N~l~g~l--------p~~~~L~l~ 178 (353)
|+|++|.+++. .|..|+++++|++|++++ .+.+|.. ++++++|++|++++|++++.. +.+++|+++
T Consensus 84 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 84 LKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 88888888876 688888888888888888 3334443 778888888888888876533 345666666
Q ss_pred CcCCCC-------------------------------------------ccccceeccCCcCCC-CCC------------
Q 038586 179 QNGQQG-------------------------------------------AEAEAVCIQHNQAND-IPC------------ 202 (353)
Q Consensus 179 ~~~~l~-------------------------------------------~~l~~l~l~~N~l~~-i~~------------ 202 (353)
++.... ..++++++++|++.. ++.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 653211 014555555554431 000
Q ss_pred ----C-------------------------CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccc
Q 038586 203 ----S-------------------------SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTED 248 (353)
Q Consensus 203 ----~-------------------------~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~ 248 (353)
+ ....++ ...+++..|..++.+++|++|++++|++++..| ..
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~ 318 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NA 318 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hH
Confidence 0 001122 223445566677777777777777777777666 55
Q ss_pred cchhhhhcccCCCccceeecCC---C-CCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 249 HGDAAIQNKQQEAVEEEALLAQ---Q-NDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~L~~---~-~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++ .+++|+.|++++ + ..|..+..+++|++|++++|++ +..|. .|..++.|+.|+.
T Consensus 319 ~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L 378 (455)
T 3v47_A 319 FW--------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLPNLKELAL 378 (455)
T ss_dssp TT--------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred hc--------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh--hccccccccEEEC
Confidence 66 566666666665 2 2244455566666666666666 33344 5555555555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=196.21 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=179.2
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ...++.|+|++ |.+++..+..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~i-~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHE--------NQIQIIKVNSFKHL-RHL--EILQLSRNHIRTI-EIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCS--------CCCCEECTTTTSSC-SSC--CEEECCSSCCCEE-CGGGGTTCS
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccC--------CcCCeeCHHHhhCC-CCC--CEEECCCCcCCcc-ChhhccCCc
Confidence 567777531 24678899999 89987777889999 999 9999999999986 667899999
Q ss_pred CCcEEeccC--CCCCCC-CCCCCCCCCEEEccCccccee-------cCccccccCCCc-----------CCCCcccccee
Q 038586 133 KLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQN-----------GQQGAEAEAVC 191 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~-----------~~l~~~l~~l~ 191 (353)
+|++|+|++ ...+|. .+..+++|++|++++|.+.+. ++.+++|+++++ ..+.. +++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeec
Confidence 999999998 666765 588999999999999998753 344555655542 22333 55666
Q ss_pred ccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC-
Q 038586 192 IQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ- 270 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 270 (353)
+++| .++ .+| .+..+++|++|++++|++++..| ..+. .+++|+.|++++
T Consensus 192 L~~n----------------~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~n 241 (440)
T 3zyj_A 192 LAMC----------------NLR-EIP-NLTPLIKLDELDLSGNHLSAIRP----GSFQ--------GLMHLQKLWMIQS 241 (440)
T ss_dssp CTTS----------------CCS-SCC-CCTTCSSCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTC
T ss_pred CCCC----------------cCc-ccc-ccCCCcccCEEECCCCccCccCh----hhhc--------cCccCCEEECCCC
Confidence 6666 333 233 47788999999999999999888 8888 999999999999
Q ss_pred ---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 271 ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 271 ---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..|..+..+++|++|+|++|++..+|.. .|..++.|+.|+...++..++|...+...|
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChh-HhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 33356788999999999999999766652 688999999999999999999987666555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=179.49 Aligned_cols=232 Identities=15% Similarity=0.127 Sum_probs=185.7
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC
Q 038586 59 CCKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 59 ~C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
.|.|..+.|... ..+++.|++++ |.+++..+..+.++ ++| ++|++++|.+++. .|..|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~ 97 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNL-KNL--HTLILINNKISKI-SPGAFA 97 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTC-TTC--CEEECCSSCCCCB-CTTTTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCC--------CcCCEeChhhhccC-CCC--CEEECCCCcCCee-CHHHhc
Confidence 478999999631 24688999999 89986666688999 999 9999999999996 689999
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce-------ecCccccccCCCcCC------------CCcccc
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQNGQ------------QGAEAE 188 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~~~------------l~~~l~ 188 (353)
++++|++|++++ ...+|..+. ++|++|++++|.+.+ .++.+++|+++++.. +.. ++
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LS 174 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CC
T ss_pred CCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cC
Confidence 999999999998 778888776 799999999999874 345678888877644 234 78
Q ss_pred ceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcc
Q 038586 189 AVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVE 263 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L 263 (353)
++++++|+++.+|......++.+ .+++..|..+..+++|++|++++|++++..+ ..++ .+++|
T Consensus 175 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L 242 (330)
T 1xku_A 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLA--------NTPHL 242 (330)
T ss_dssp EEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGG--------GSTTC
T ss_pred EEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhcc--------CCCCC
Confidence 89999999998886554544443 4566678889999999999999999988777 6777 89999
Q ss_pred ceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccccccc------CcccchhccccCCC
Q 038586 264 EEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDV------REFLSELDQIAEPR 318 (353)
Q Consensus 264 ~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~------l~~L~~Ld~~~~~~ 318 (353)
++|++++ ..+|..+..+++|++|++++|++..+|.. .|.. .+.++.++...++.
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~-~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh-hcCCcccccccccccceEeecCcc
Confidence 9999998 78888899999999999999999777652 3433 24555666554443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=182.40 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=180.5
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCC
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGS 130 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~ 130 (353)
|.|..+.|... ..+++.|++++ |.+++..|..+.++ ++| ++|++++|.+++. .|..|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQN--------NDISELRKDDFKGL-QHL--YALVLVNNKISKI-HEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CGGGSTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCC--------CcCCccCHhHhhCC-CCC--cEEECCCCccCcc-CHhHhhC
Confidence 78999999632 24789999999 89986667789999 999 9999999999997 6889999
Q ss_pred CCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce-------ecCccccccCCCcCCCC----------cccccee
Q 038586 131 LSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQNGQQG----------AEAEAVC 191 (353)
Q Consensus 131 L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~~~l~----------~~l~~l~ 191 (353)
+++|++|++++ ...+|..+. ++|++|++++|.+.+ .++.+++|+++++.... ..++.++
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 99999999998 778888776 899999999998764 34566777877764421 0267888
Q ss_pred ccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 192 IQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|+++.+|......++.+ .+++..|..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 246 (332)
T 2ft3_A 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN----GSLS--------FLPTLREL 246 (332)
T ss_dssp CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----TGGG--------GCTTCCEE
T ss_pred CcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----hHhh--------CCCCCCEE
Confidence 99998888876554444444 4445556788889999999999999988777 6777 88999999
Q ss_pred ecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccccccc------CcccchhccccCC
Q 038586 267 LLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDV------REFLSELDQIAEP 317 (353)
Q Consensus 267 ~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~------l~~L~~Ld~~~~~ 317 (353)
++++ ..+|..+..+++|++|++++|+++.+|.. .|.. ...++.++...++
T Consensus 247 ~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp ECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSS
T ss_pred ECCCCcCeecChhhhcCccCCEEECCCCCCCccChh-HccccccccccccccceEeecCc
Confidence 9988 77888888899999999999999766652 3433 2456666655444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=190.67 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=156.4
Q ss_pred CccccceEecCC-----------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc
Q 038586 59 CCKWRGVCCNNT-----------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~ 127 (353)
+|.|.|+ |+-. ..+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .|..
T Consensus 29 ~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~ 95 (353)
T 2z80_A 29 SCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN--------NRITYISNSDLQRC-VNL--QALVLTSNGINTI-EEDS 95 (353)
T ss_dssp EECTTSE-EECCSTTCSSCCTTCCTTCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTSCCCEE-CTTT
T ss_pred CCCCCeE-eeCCCCCcccccccccccCcEEECCC--------CcCcccCHHHhccC-CCC--CEEECCCCccCcc-CHhh
Confidence 7899888 6421 23789999999 88875444578888 899 9999999999886 6677
Q ss_pred cCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccceecCc--cccccCCCcCCCCccccceeccCC-cCCCCC
Q 038586 128 VGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEK--DQHDEGSQNGQQGAEAEAVCIQHN-QANDIP 201 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~--~~~L~l~~~~~l~~~l~~l~l~~N-~l~~i~ 201 (353)
|.++++|++|++++ ...+|.. ++++++|++|++++|++++ +|. . +..+.. ++++++++| .+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~-------~~~l~~-L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSL-------FSHLTK-LQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCS-------CTTCTT-CCEEEEEESSSCCEEC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhh-------hccCCC-CcEEECCCCccccccC
Confidence 88899999999988 6667765 7888999999999988773 332 2 233333 444444444 233322
Q ss_pred CC---CCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---
Q 038586 202 CS---SNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--- 270 (353)
Q Consensus 202 ~~---~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--- 270 (353)
.. ....++.+ ++++..|..+..+++|++|++++|++....+ ..++ .+++|+.|++++
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~--------~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVD--------VTSSVECLELRDTDL 234 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHH--------HTTTEEEEEEESCBC
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhh--------hcccccEEECCCCcc
Confidence 11 11122221 3334445555555555555555555532211 1112 234444444443
Q ss_pred --------------------------------CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCC
Q 038586 271 --------------------------------QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 271 --------------------------------~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
..+|..+..+++|++|++++|++..+|+. .|+.++.|+.|+...++.
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH-HHhcCCCCCEEEeeCCCc
Confidence 13577788999999999999999999982 368999999999999999
Q ss_pred cccccccccc
Q 038586 319 DEECGKLQAV 328 (353)
Q Consensus 319 ~~~c~~l~~~ 328 (353)
.+.|..+..+
T Consensus 314 ~~~~~~l~~l 323 (353)
T 2z80_A 314 DCSCPRIDYL 323 (353)
T ss_dssp CCCHHHHHHH
T ss_pred cCcCCCcHHH
Confidence 8888766654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=179.27 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=172.4
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~ 148 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .+..|.++++|++|++++ ...+ |..
T Consensus 28 ~~l~~L~ls~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSF--------NPLRHLGSYSFFSF-PEL--QVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTT--------CCCCEECTTTTTTC-TTC--SEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCC--------CcccccCHhHhccc-cCC--cEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhh
Confidence 3689999999 89986666688899 999 9999999999986 556799999999999998 4444 467
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L 227 (353)
+.++++|++|++++|.+.+..+.. +..+.. ++++++++| .+++ .+|..++.+++|
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-------IGHLKT-LKELNVAHN----------------LIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGGCTTC
T ss_pred hcCCccccEEECCCCCccccCchh-------cccCCC-CCEEECcCC----------------ccceecCchhhccCCCC
Confidence 899999999999999998655544 566677 899999999 6655 368899999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccc----eeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE----EALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRL 300 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~----~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~ 300 (353)
++|++++|++++..+ ..+. .+..|+ .+++++ ..+|.......+|++|++++|++..+|+.
T Consensus 152 ~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~- 218 (276)
T 2z62_A 152 EHLDLSSNKIQSIYC----TDLR--------VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG- 218 (276)
T ss_dssp CEEECCSSCCCEECG----GGGH--------HHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT-
T ss_pred CEEECCCCCCCcCCH----HHhh--------hhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh-
Confidence 999999999998766 6666 566666 788888 55566666667999999999999777762
Q ss_pred ccccCcccchhccccCCCcccccccccc
Q 038586 301 VFDVREFLSELDQIAEPRDEECGKLQAV 328 (353)
Q Consensus 301 ~~~~l~~L~~Ld~~~~~~~~~c~~l~~~ 328 (353)
.|..++.|+.|+...++..+.|..+..+
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred HhcccccccEEEccCCcccccCCchHHH
Confidence 5789999999999999999999877765
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=197.89 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=105.5
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+++..|..|..+ ++| ++|+|++|.+++. .|..|+++++|++|+|++ ...+|+. ++++++|++|++++|.++
T Consensus 85 n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 85 LQIEEIDTYAFAYA-HTI--QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp SCCCEECTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCChHHhcCC-CCC--CEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 45554444455555 555 5555555555554 344455555555555555 4444443 355555555555555554
Q ss_pred eecC-------ccccccCCCcCCCC-------c------------------cccceeccCCcCCCCCCCCCCCcccccee
Q 038586 167 QILE-------KDQHDEGSQNGQQG-------A------------------EAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 167 g~lp-------~~~~L~l~~~~~l~-------~------------------~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
+..| .+++|+++++.... . .++.+++++|.+..++......++.+.+.
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 4322 23344444332111 0 01222222222222221111122222211
Q ss_pred e---eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEc
Q 038586 215 G---EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 215 g---~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~L 288 (353)
+ .-+..++.+++|++|++++|.+.+.+| ..++ .+++|+.|++++ ..+|..+..+++|+.|+|
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGT--------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCCH----HHhc--------CccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 1 013456677777777777777777766 6666 667777777766 445555556666777777
Q ss_pred cCCCCCCCCcccccccCcccchhcc
Q 038586 289 SEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 289 s~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++|.+..+|. .++.++.|+.|+.
T Consensus 309 s~N~l~~i~~--~~~~l~~L~~L~L 331 (597)
T 3oja_B 309 SHNHLLHVER--NQPQFDRLENLYL 331 (597)
T ss_dssp CSSCCCCCGG--GHHHHTTCSEEEC
T ss_pred CCCCCCccCc--ccccCCCCCEEEC
Confidence 7776666666 5555555555554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=176.88 Aligned_cols=203 Identities=15% Similarity=0.077 Sum_probs=161.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.+++++ ++++ .+|+.+ . +.+ ++|++++|.+++. .|..|..+++|++|+|++ ...+|.. +
T Consensus 11 ~l~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 74 (290)
T 1p9a_G 11 SHLEVNCDK--------RNLT-ALPPDL--P-KDT--TILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD-G 74 (290)
T ss_dssp TCCEEECTT--------SCCS-SCCSCC--C-TTC--CEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC-S
T ss_pred CccEEECCC--------CCCC-cCCCCC--C-CCC--CEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC-C
Confidence 678888888 7877 677544 2 677 8999999999886 677788999999999988 5566654 7
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
.+++|++|++++|+++ .+|.. +..+.. ++++++++| ++++..|..|..+++|++|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~-------~~~l~~-L~~L~l~~N----------------~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLL-------GQTLPA-LTVLDVSFN----------------RLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCC-------TTTCTT-CCEEECCSS----------------CCCCCCSSTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchh-------hccCCC-CCEEECCCC----------------cCcccCHHHHcCCCCCCEE
Confidence 8889999999999887 66665 566666 888999999 6665556778888899999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEEccCCCCCCCCcccccccCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIVESEVEIDSLPDRLVFDVRE 306 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~ 306 (353)
++++|++++..+ ..+. .+++|+.|++++ ..+|.. +..+++|++|++++|++..+|. .+...+
T Consensus 130 ~L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~~~ 195 (290)
T 1p9a_G 130 YLKGNELKTLPP----GLLT--------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSH 195 (290)
T ss_dssp ECTTSCCCCCCT----TTTT--------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred ECCCCCCCccCh----hhcc--------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh--hhcccc
Confidence 999999887666 5667 788899999988 566654 5678899999999999988988 777778
Q ss_pred ccchhccccCCCcccccccccccc
Q 038586 307 FLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 307 ~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.|+.++...++..+.|+..+...|
T Consensus 196 ~L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp CCSEEECCSCCBCCSGGGHHHHHH
T ss_pred cCCeEEeCCCCccCcCccHHHHHH
Confidence 888888888888888875554445
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=194.50 Aligned_cols=208 Identities=11% Similarity=0.010 Sum_probs=174.7
Q ss_pred cEEEEEcCCCCCccccccCCccc--ccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGT--ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEII- 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~--lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP- 146 (353)
+++.|++++ |.+++. +|..+..+ ++| ++|++++|.+++ +|..+..+++|++|++++ .+..|
T Consensus 351 ~L~~L~ls~--------n~l~~~~~~~~~~~~~-~~L--~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 351 SLSYLDLSR--------NALSFSGCCSYSDLGT-NSL--RHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp TCCEEECCS--------SCEEEEEECCHHHHCC-SCC--CEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred CCCEEECcC--------CccCCCcchhhhhccC-Ccc--cEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccCh
Confidence 556666666 777655 47778888 888 888888888887 677888888888888888 44444
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~ 225 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++| .+++ .+|..++.++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGI-------FLGLTS-LNTLKMAGN----------------SFKDNTLSNVFANTT 473 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhh-------hcCCCC-CCEEECCCC----------------cCCCcchHHhhccCC
Confidence 46788888888888888888777776 667777 888999998 8877 4788999999
Q ss_pred CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 226 DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 226 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
+|++|++++|++++..| ..++ .+++|+.|++++ +.+|..+..+++|++|++++|++..+|+ .
T Consensus 474 ~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~--~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISW----GVFD--------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG--I 539 (606)
T ss_dssp TCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES--C
T ss_pred CCCEEECCCCcCCccCh----hhhc--------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH--h
Confidence 99999999999999888 8888 999999999999 4458889999999999999999999999 7
Q ss_pred cccCc-ccchhccccCCCccccccccccccc
Q 038586 302 FDVRE-FLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 302 ~~~l~-~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
+..++ .|+.++...++..+.|...+...|-
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 88886 6999999999999999987766774
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=182.01 Aligned_cols=83 Identities=10% Similarity=-0.060 Sum_probs=60.8
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
..+..+++|++|++++|++.+..| ..++ .+++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMY----HPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEES----GGGT--------TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred HHHcCCCCccEEECCCCcCCCcCh----hHcc--------ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 456777888888888888877767 6777 778888888877 4456566667788888888888877
Q ss_pred CCcccccccCcccchhcccc
Q 038586 296 LPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~ 315 (353)
+|+ .++.++.|+.|+...
T Consensus 310 ~~~--~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 310 VER--NQPQFDRLENLYLDH 327 (390)
T ss_dssp CGG--GHHHHTTCSEEECCS
T ss_pred cCc--cccccCcCCEEECCC
Confidence 777 666677777776533
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=198.30 Aligned_cols=225 Identities=13% Similarity=0.065 Sum_probs=177.4
Q ss_pred ccCCcccccHHHHHhhccccccEEEeecCCCCCC----------------CCCcccC--CCCCCcEEeccC---CCCCCC
Q 038586 89 RKILKGTISSALLLCLNCMIYDIWTLVTINFGGI----------------PVPEFVG--SLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 89 ~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~----------------~~P~~~~--~L~~L~~L~Ls~---~~~lP~ 147 (353)
.|+++| +|++++++ ++| ++|+|++|.+++. .+|+.++ ++++|++|+|++ .+.+|.
T Consensus 192 ~n~l~~-ip~~l~~l-~~L--~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 192 SNNITF-VSKAVMRL-TKL--RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp SCEEEE-ECGGGGGC-TTC--CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred cCCCcc-CCHHHhcc-cCC--CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence 357777 99999999 999 9999999999981 0689988 999999999998 889999
Q ss_pred CCCCCCCCCEEEccCcc-cce-ecCccccccCCCcCCC------CccccceeccCCcCCCCCC--C--CCCC-----ccc
Q 038586 148 SVPEYPTLFDVEGYMAS-LVQ-ILEKDQHDEGSQNGQQ------GAEAEAVCIQHNQANDIPC--S--SNNN-----VQT 210 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~-l~g-~lp~~~~L~l~~~~~l------~~~l~~l~l~~N~l~~i~~--~--~~~~-----l~~ 210 (353)
.++++++|++|++++|+ ++| .+|.. ++.+ .. ++++++++|+++.+|. . .... +..
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~-------~~~L~~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDD-------WQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHH-------HHHHHHSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred HHhcCCCCCEEECcCCCCCccccchHH-------HHhhhccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 99999999999999998 888 77765 4333 44 7777777777777665 1 2222 334
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc-cceeecCC---CCCchhhcCCC--CCC
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV-EEEALLAQ---QNDPIELLCLD--NIL 284 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~-L~~L~L~~---~~iP~~l~~l~--~L~ 284 (353)
.+++|.+| .++.+++|++|++++|+++ .+| ..++ .+++ |+.|++++ ..+|..+..++ +|+
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp----~~l~--------~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP----ANFC--------GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECC----TTSE--------EECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-ccc----Hhhh--------hhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 47888999 9999999999999999998 688 7788 8999 99999999 77888877655 899
Q ss_pred EEEccCCCC-CCCCcccccc-------cCcccchhccccCCCc---c----cccccccccc--cccccCCChHHH
Q 038586 285 EIVESEVEI-DSLPDRLVFD-------VREFLSELDQIAEPRD---E----ECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 285 ~L~Ls~N~l-~~iP~~~~~~-------~l~~L~~Ld~~~~~~~---~----~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
+|++++|.+ +.+|. .+. .++.|+.|+...+... . .+.+++.+.. +.+. .+|...+
T Consensus 406 ~L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 406 AIDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp EEECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS
T ss_pred EEECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh
Confidence 999999999 88888 777 7778988886544321 1 2445555443 3444 6665443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=170.30 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=151.5
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEe
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
||.|.|.+|.. ..+.+++++ +.++ .+|..+. +.+ ++|++++|.+++. .|..|.++++|++|+
T Consensus 4 Cp~~~gC~C~~---~~~~l~~~~--------~~l~-~~p~~~~---~~l--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 65 (251)
T 3m19_A 4 CETVTGCTCNE---GKKEVDCQG--------KSLD-SVPSGIP---ADT--EKLDLQSTGLATL-SDATFRGLTKLTWLN 65 (251)
T ss_dssp CHHHHSSEEEG---GGTEEECTT--------CCCS-SCCSCCC---TTC--CEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCCCceEcCC---CCeEEecCC--------CCcc-ccCCCCC---CCC--CEEEccCCCcCcc-CHhHhcCcccCCEEE
Confidence 88999999953 345789999 8887 6776442 678 9999999999997 777899999999999
Q ss_pred ccC--CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 139 VDH--QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 139 Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
|++ ...+ |..+.++++|++|++++|++++..+.. +..+.. +++|++++| ++++
T Consensus 66 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~ 121 (251)
T 3m19_A 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-------FDHLTQ-LDKLYLGGN----------------QLKS 121 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCC
T ss_pred CCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-------hcccCC-CCEEEcCCC----------------cCCC
Confidence 999 4444 556899999999999999999665555 667777 999999999 6665
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhcCCCCCCEEEccCC
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELLCLDNILEIVESEV 291 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~~l~~L~~L~Ls~N 291 (353)
..+..+..+++|++|++++|++++..+ ..++ .+++|+.|++++ ..+| ..+..+++|++|++++|
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPA----GAFD--------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cChhHhccCCcccEEECcCCcCCccCH----HHcC--------cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555667899999999999999998766 6788 899999999998 4444 46888999999999999
Q ss_pred CCC
Q 038586 292 EID 294 (353)
Q Consensus 292 ~l~ 294 (353)
++.
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 993
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=186.11 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=157.4
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ..+++.|+|++ |.+++..|..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~n~i~~~-~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK--------NRIKTLNQDEFASF-PHL--EELELNENIVSAV-EPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS--------SCCCEECTTTTTTC-TTC--CEEECTTSCCCEE-CTTTTTTCT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC--------CccceECHhHccCC-CCC--CEEECCCCccCEe-ChhhhhCCc
Confidence 556777431 23567788888 66665555666666 777 7777777777665 566677777
Q ss_pred CCcEEeccC--CCCCCCC-CCCCCCCCEEEccCccccee-------cCccccccCCCcC----------CCCccccceec
Q 038586 133 KLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNG----------QQGAEAEAVCI 192 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~----------~l~~~l~~l~l 192 (353)
+|++|+|++ ...+|.. ++++++|++|++++|++.+. ++.+++|+++++. .+.. ++.+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l 159 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTL 159 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEEC
Confidence 777777766 4555543 56666777777766666543 2344555554432 2223 455555
Q ss_pred cCCcCCCCCC------------------------C---CCCCccccceee----------------------------eC
Q 038586 193 QHNQANDIPC------------------------S---SNNNVQTVEFEG----------------------------EM 217 (353)
Q Consensus 193 ~~N~l~~i~~------------------------~---~~~~l~~~~l~g----------------------------~~ 217 (353)
++|+++.++. . ....++.+.+.+ .+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 5555554431 0 011112111111 12
Q ss_pred C-cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCC
Q 038586 218 E-HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 218 p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
| ..+..+++|++|++++|++++..+ ..+. .+++|+.|++++ +..|..+..+++|++|++++|+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEG----SMLH--------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECT----TSCT--------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CHHHhcCccccCeeECCCCcCCccCh----hhcc--------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 2 346667777788888777776666 5666 888999999988 3346778899999999999999
Q ss_pred CCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 293 IDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 293 l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..+|+. .|..++.|+.|+...++..+.|...|...|
T Consensus 308 l~~~~~~-~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 308 LTTLEES-VFHSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp CSCCCGG-GBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred CceeCHh-HcCCCcccCEEEccCCCccCccchHhHHhh
Confidence 9777762 678899999999988998888887665554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=179.10 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=164.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|+|++ |.++ .+|..+..+ ++| ++|+|++|.++. +|..++++++|++|++++ .+.+|..
T Consensus 104 ~~L~~L~L~~--------n~l~-~lp~~~~~l-~~L--~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 104 SHLQHMTIDA--------AGLM-ELPDTMQQF-AGL--ETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp TTCSEEEEES--------SCCC-CCCSCGGGG-TTC--SEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred CCCCEEECCC--------CCcc-chhHHHhcc-CCC--CEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChh
Confidence 3789999999 8998 899999999 999 999999999994 899999999999999998 8889988
Q ss_pred CCC---------CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC--CCCCcc-----ccc
Q 038586 149 VPE---------YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQ-----TVE 212 (353)
Q Consensus 149 l~~---------L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~-----~~~ 212 (353)
++. +++|++|++++|+++ .+|.. ++.+.. ++++++++|+++.+|.. ....++ .+.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-------l~~l~~-L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-------IANLQN-LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-------GGGCTT-CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred HhhccchhhhccCCCCCEEECcCCCcC-cchHh-------hcCCCC-CCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 765 999999999999998 77766 666666 88888888888877642 223333 335
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~L 288 (353)
+.+.+|..++.+++|++|++++|++.+.+| ..++ .+++|+.|++++ +.+|..+..+++|+.+++
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~--------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIH--------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGG--------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhh--------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 667899999999999999999999999999 8888 999999999998 899999999999999999
Q ss_pred cCCCCCCCCc
Q 038586 289 SEVEIDSLPD 298 (353)
Q Consensus 289 s~N~l~~iP~ 298 (353)
..|.+..++.
T Consensus 309 ~~~~~~~l~~ 318 (328)
T 4fcg_A 309 PPHLQAQLDQ 318 (328)
T ss_dssp CGGGSCC---
T ss_pred CHHHHHHHhh
Confidence 9887765554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=167.21 Aligned_cols=169 Identities=8% Similarity=0.031 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l 149 (353)
+++.|++++ +.+. .++ .+..+ ++| ++|++++|.+++ ++ .+..+++|++|++++ ...+|+ .+
T Consensus 42 ~L~~L~l~~--------~~i~-~~~-~l~~l-~~L--~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 42 SIDQIIANN--------SDIK-SVQ-GIQYL-PNV--RYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ceeeeeeCC--------CCcc-ccc-ccccC-CCC--cEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 455566665 4443 222 24555 566 666666666655 22 455566666666665 333333 34
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+++++|++|++++|++++..+.. +..+.. ++++++++| .+++..+..++.+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGV-------FDKLTN-LTYLNLAHN----------------QLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHH-------hccCCC-CCEEECCCC----------------ccCccCHHHhccCccCCE
Confidence 55666666666666655444433 344444 555666665 444333444555556666
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+++|++|++++|.+
T Consensus 162 L~l~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 162 LDLSYNQLQSLPE----GVFD--------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCCcCccCH----HHhc--------CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 6666666555444 3344 555555555554 22222344555555555555555
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=176.49 Aligned_cols=223 Identities=14% Similarity=0.081 Sum_probs=141.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-C
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-V 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l 149 (353)
+++.|++++ +.+.+..+..+..+ ++| ++|++++|.+++. .|..|+++++|++|++++ ...+|.. +
T Consensus 70 ~L~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 137 (390)
T 3o6n_A 70 QVELLNLND--------LQIEEIDTYAFAYA-HTI--QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIF 137 (390)
T ss_dssp CCSEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcEEECCC--------CcccccChhhccCC-CCc--CEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHh
Confidence 566777777 55554334455555 566 6666666666554 444455566666666655 4445544 3
Q ss_pred CCCCCCCEEEccCccccee-------cCccccccCCCcCCCC--------------------------c-----------
Q 038586 150 PEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNGQQG--------------------------A----------- 185 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~~l~--------------------------~----------- 185 (353)
+++++|++|++++|.+.+. ++.+++|+++++.... .
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCee
Confidence 5555555555555554432 2233444444432111 1
Q ss_pred ---------cccceeccCCcCCCCCC-CCCCCc-----cccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccc
Q 038586 186 ---------EAEAVCIQHNQANDIPC-SSNNNV-----QTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHG 250 (353)
Q Consensus 186 ---------~l~~l~l~~N~l~~i~~-~~~~~l-----~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~ 250 (353)
.++.+++++|++++++. .....+ ....+++..|..+..+++|++|++++|++++ +| ..++
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~----~~~~ 292 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN----LYGQ 292 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EE----CSSS
T ss_pred eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cC----cccC
Confidence 13444444454444331 111223 3345566778999999999999999999987 45 4556
Q ss_pred hhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccc
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGK 324 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~ 324 (353)
.+++|+.|++++ ..+|..+..+++|++|++++|++..+| +..++.|+.|+...++..+.|..
T Consensus 293 --------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 293 --------PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp --------CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHH
T ss_pred --------CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCccchhHH
Confidence 789999999999 778888999999999999999997775 45678888888877777665543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=186.31 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=165.2
Q ss_pred cccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccC
Q 038586 86 NARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYM 162 (353)
Q Consensus 86 ~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~ 162 (353)
..+.|.+++..|..|..+ ++| ++|+|++|.+++. .|..|+++++|++|+|++ .+..|..++++++|++|++++
T Consensus 105 ~L~~n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 105 YMGFNAIRYLPPHVFQNV-PLL--TVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp ECCSSCCCCCCTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCCCCHHHHcCC-CCC--CEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 344588887777778899 999 9999999999984 334479999999999999 444456799999999999999
Q ss_pred cccce----ecCccc-------------------cccCCCcCCC------CccccceeccCCcCCCCCC-CCCC-----C
Q 038586 163 ASLVQ----ILEKDQ-------------------HDEGSQNGQQ------GAEAEAVCIQHNQANDIPC-SSNN-----N 207 (353)
Q Consensus 163 N~l~g----~lp~~~-------------------~L~l~~~~~l------~~~l~~l~l~~N~l~~i~~-~~~~-----~ 207 (353)
|.+++ .+|.++ +|+++++... ...++.+++++|++++++. .... +
T Consensus 181 N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 260 (597)
T ss_dssp SCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence 99874 344444 4444444221 1127888999998887642 2223 3
Q ss_pred ccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCC
Q 038586 208 VQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNIL 284 (353)
Q Consensus 208 l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~ 284 (353)
+....+++..|..|+.+++|++|+|++|++++ +| ..++ .+++|+.|++++ ..+|..+..+++|+
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~----~~~~--------~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN----LYGQ--------PIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE----CSSS--------CCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC----cccc--------cCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 34446777889999999999999999999987 45 4556 799999999999 77899999999999
Q ss_pred EEEccCCCCCCCCcccccccCcccchhccccCCCcccc
Q 038586 285 EIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEEC 322 (353)
Q Consensus 285 ~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c 322 (353)
.|++++|.+..+| ++.++.|+.|+...++..+.|
T Consensus 328 ~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 328 NLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred EEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 9999999997665 355677888877666554433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=182.86 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|++++ |.+++..|.+|.++ ++| ++|+|++|.+++. .|..|+++++|++|+|++ .+..|..
T Consensus 33 ~~l~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSF--------NVLPTIQNTTFSRL-INL--TFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp TTCCEEECTT--------CCCSEECTTTSTTC-TTC--SEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcCcEEEccC--------CccCcCChhHhccC-ccc--eEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhh
Confidence 4789999999 99997778899999 999 9999999999997 789999999999999998 4555788
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccc-----cceeeeCCcc
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQT-----VEFEGEMEHS 220 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~-----~~l~g~~p~~ 220 (353)
++++++|++|++++|.+++..|.. ++.+.. ++++++++|++..++.. ....++. ..+++..|..
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~-------~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIP-------LHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSC-------CTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred hcccccccEeeccccCcccCCcch-------hccCCc-ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 999999999999999998643444 455555 67777777776655311 1223332 2455566777
Q ss_pred hhccCCCC--EEEcccCcCcccCC
Q 038586 221 LSEVYDIF--DVERYSSSLDQILE 242 (353)
Q Consensus 221 l~~l~~L~--~L~Ls~N~l~g~~p 242 (353)
++.+++|+ .|++++|++.+..|
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECT
T ss_pred hhhhcccceeEEecCCCccCccCh
Confidence 88888888 88888888877666
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=187.70 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=176.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHH-HHHhhccccccEEEeecCCCCCCCC--CcccCCCCCCcEEeccC---CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSA-LLLCLNCMIYDIWTLVTINFGGIPV--PEFVGSLSKLSLNTVDH---QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~~--P~~~~~L~~L~~L~Ls~---~~~l 145 (353)
.+++.|++++ |.+.+.+|.. +..+ ++| ++|++++|.+++. . |..++.+++|++|++++ .+..
T Consensus 325 ~~L~~L~l~~--------n~~~~~~~~~~~~~l-~~L--~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 325 PSLTHLSIKG--------NTKRLELGTGCLENL-ENL--RELDLSHDDIETS-DCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp TTCSEEECCS--------CSSCCBCCSSTTTTC-TTC--CEEECCSSCCCEE-EESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred CcCCEEECCC--------CCcccccchhhhhcc-CcC--CEEECCCCccccc-cCcchhcccCCCCCEEECCCCcCCcCC
Confidence 4688999999 8888888764 7788 999 9999999999885 4 67789999999999998 4455
Q ss_pred CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCcccc-----ceee--
Q 038586 146 IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTV-----EFEG-- 215 (353)
Q Consensus 146 P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~-----~l~g-- 215 (353)
|..++++++|++|++++|++.+..|.. .+..+.. ++.+++++|++..++.. ....++.+ .+++
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQS------PFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCC------TTTTCTT-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred HHHhcCCccCCeEECCCCcCCCcccch------hhhCccc-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 778889999999999999988654421 0333444 66666666666543321 12333333 4443
Q ss_pred -eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccC
Q 038586 216 -EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESE 290 (353)
Q Consensus 216 -~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~ 290 (353)
..+..+..+++|++|++++|++++..| ..++ .+++|+.|++++ +..|..+..+++| +|++++
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFT--------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred cccchhhccCCCccEEECCCCccCccCh----hhhc--------cccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 233678999999999999999999888 8888 999999999999 5567789999999 999999
Q ss_pred CCC-CCCCcccccccCcccchhccccCCCccccccccccccc
Q 038586 291 VEI-DSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 291 N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
|++ +..|. .++.++.|+.++...++..+.|...+.+.|-
T Consensus 533 N~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 533 NHISIILPS--LLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp SCCCCCCGG--GHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CcccccCHh--hcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 999 54555 6889999999999999999999987777773
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=176.02 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=156.0
Q ss_pred ccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCC-CcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEc
Q 038586 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPV-PEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 85 ~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~-P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~L 160 (353)
.+.+.|.+++..|..+.++ ++| ++|++++|.+.+. + |..|.++++|++|+|++ .+..|..++++++|++|++
T Consensus 35 L~Ls~n~i~~~~~~~~~~l-~~L--~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRL-QDL--QFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp EECCSSCCCEECTTTTSSC-TTC--CEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred EEecCCccCcCChhHhccC-ccc--cEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 5667777877667788888 888 9999998888765 5 45688889999999988 3445778888999999999
Q ss_pred cCcccce---------ecCccccccCCCcCC-----------CCccccceeccCCcCCCCCCCCC---------------
Q 038586 161 YMASLVQ---------ILEKDQHDEGSQNGQ-----------QGAEAEAVCIQHNQANDIPCSSN--------------- 205 (353)
Q Consensus 161 s~N~l~g---------~lp~~~~L~l~~~~~-----------l~~~l~~l~l~~N~l~~i~~~~~--------------- 205 (353)
++|++++ .++.+++|+++++.. +.. ++++++++|++..++....
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9988865 245667777776532 223 5677888888776533211
Q ss_pred ----------------------CCcccc-----ceeeeCCcchhc-----------------------------------
Q 038586 206 ----------------------NNVQTV-----EFEGEMEHSLSE----------------------------------- 223 (353)
Q Consensus 206 ----------------------~~l~~~-----~l~g~~p~~l~~----------------------------------- 223 (353)
..++.+ .+++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 112222 222223332221
Q ss_pred ----cCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 224 ----VYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 224 ----l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
.++|++|++++|++.+.+| ..++ .+++|++|++++ +..|..+..+++|++|++++|.++.
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLK----SVFS--------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECT----TTTT--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccccccCceEEEecCccccccch----hhcc--------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 1579999999999998888 8888 999999999999 3346688999999999999999955
Q ss_pred C-CcccccccCcccchhccccC
Q 038586 296 L-PDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 296 i-P~~~~~~~l~~L~~Ld~~~~ 316 (353)
+ |. .|+.++.|+.|+...+
T Consensus 338 ~~~~--~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 338 IDSR--MFENLDKLEVLDLSYN 357 (455)
T ss_dssp ECGG--GGTTCTTCCEEECCSS
T ss_pred cChh--HhcCcccCCEEECCCC
Confidence 5 56 7899999999986443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=195.34 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=169.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCC-----------------CCCCcccC--CCCCCcEEeccC---CCCCCC
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGG-----------------IPVPEFVG--SLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~-----------------~~~P~~~~--~L~~L~~L~Ls~---~~~lP~ 147 (353)
|+++| +|++++++ ++| ++|+|++|.+++ . +|+.++ ++++|++|+|++ .+.+|.
T Consensus 435 N~L~~-IP~~l~~L-~~L--~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 435 NRITF-ISKAIQRL-TKL--QIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp CEEEE-ECGGGGGC-TTC--CEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred Ccccc-hhHHHhcC-CCC--CEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcCCCCCccChH
Confidence 45665 99999999 999 999999999999 4 799988 999999999998 889999
Q ss_pred CCCCCCCCCEEEccCcc-cce-ecCcc-ccccCCCcCCCCccccceeccCCcCCCCCC----CCCCCccc-----cceee
Q 038586 148 SVPEYPTLFDVEGYMAS-LVQ-ILEKD-QHDEGSQNGQQGAEAEAVCIQHNQANDIPC----SSNNNVQT-----VEFEG 215 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~-l~g-~lp~~-~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~----~~~~~l~~-----~~l~g 215 (353)
.++++++|++|++++|+ ++| .+|.. ..+. .....+.. ++.|++++|+++.+|. .....++. .+++
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-~~~~~l~~-L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLA-DDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-HCTTTTTT-CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhh-hcccccCC-ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence 99999999999999998 888 77754 0000 00112224 7777777777777665 22233333 3555
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc-cceeecCC---CCCchhhcCCCC--CCEEEcc
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV-EEEALLAQ---QNDPIELLCLDN--ILEIVES 289 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~-L~~L~L~~---~~iP~~l~~l~~--L~~L~Ls 289 (353)
.+| .++.+++|++|++++|++. .+| ..++ .+++ |+.|++++ ..+|..+..++. |+.|+++
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp----~~l~--------~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIP----EDFC--------AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCC----TTSC--------EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred cch-hhcCCCcceEEECcCCccc-cch----HHHh--------hccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 788 8999999999999999998 788 7788 8998 99999999 778887777654 9999999
Q ss_pred CCCC-CCCCccc-ccc--cCcccchhccccCCCc-------ccccccccccc--cccccCCChHHH
Q 038586 290 EVEI-DSLPDRL-VFD--VREFLSELDQIAEPRD-------EECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 290 ~N~l-~~iP~~~-~~~--~l~~L~~Ld~~~~~~~-------~~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
+|++ +.+|... .++ .++.|+.|+...+... ..|..++.+.. +.+. .+|...+
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHh
Confidence 9999 6666410 122 3347888876443221 13445555543 3333 6666543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-20 Score=179.41 Aligned_cols=212 Identities=11% Similarity=0.022 Sum_probs=152.1
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CC-CCCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QG-EIIHSVPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~-~lP~~l~~ 151 (353)
..++.++ ++++ .+|..+ . +++ ++|+|++|++++. .|..|.++++|++|+|++ .. ..|..|++
T Consensus 14 ~~v~c~~--------~~l~-~ip~~~--~-~~l--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHR--------KRFV-AVPEGI--P-TET--RLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCS--------CCCS-SCCSCC--C-TTC--SEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CEEEeCC--------CCcC-cCCCCC--C-CCC--cEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 3577787 7776 677644 3 688 9999999999997 678899999999999998 44 44788999
Q ss_pred CCCCCEEEccCccccee-------cCccccccCCCcCC----------CCccccceeccCCcCCCCCC---CCCCCcccc
Q 038586 152 YPTLFDVEGYMASLVQI-------LEKDQHDEGSQNGQ----------QGAEAEAVCIQHNQANDIPC---SSNNNVQTV 211 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~~----------l~~~l~~l~l~~N~l~~i~~---~~~~~l~~~ 211 (353)
+++|++|+|++|++++. ++.+++|+++++.. +.. ++++++++|++..++. .....++.+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEE
Confidence 99999999999998742 34556667665532 233 5667777776655432 122333333
Q ss_pred ceee-----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCC
Q 038586 212 EFEG-----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDN 282 (353)
Q Consensus 212 ~l~g-----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~ 282 (353)
.+.+ ..+..+..+++|+.|++++|++.+..+ ..+. .+++|+.|++++ +.+|.......+
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFK--------RLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT----TCSC--------SCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh----hhcc--------cCcccceeeCCCCccccccCcccccCcc
Confidence 3332 223446667777777777777766555 5666 788888888877 556666666678
Q ss_pred CCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 283 ILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 283 L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
|++|++++|++..+|.. .|..+++|+.|+...
T Consensus 226 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYL-AVRHLVYLRFLNLSY 257 (477)
T ss_dssp CSEEEEESSCCCSCCHH-HHTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHH-HhcCccccCeeECCC
Confidence 99999999999888842 688888999888644
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=174.87 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCCccccccCC-cccccHHHH-------HhhccccccEEEeecCCCCCCCCCccc--CCCCCCcEEeccC-
Q 038586 73 HFKVLNLRSSNDENARRKIL-KGTISSALL-------LCLNCMIYDIWTLVTINFGGIPVPEFV--GSLSKLSLNTVDH- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l-~g~lp~~l~-------~L~~~L~~~~L~Ls~N~l~~~~~P~~~--~~L~~L~~L~Ls~- 141 (353)
.++.|++++ |.+ .+.+|..+. .+ ++| ++|++++|.+++. +|..+ +.+++|++|+|++
T Consensus 64 ~L~~L~L~~--------n~l~~~~~~~~~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 64 IIKSLSLKR--------LTVRAARIPSRILFGALRVLGI-SGL--QELTLENLEVTGT-APPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp HHHHCCCCE--------EEEEEEECBHHHHHHHHHHHTT-SCC--CEEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESC
T ss_pred HHhhccccc--------ccccCCCcCHHHHHHHHHhcCc-CCc--cEEEccCCcccch-hHHHHHHhcCCCccEEEccCC
Confidence 367788888 777 567777665 67 888 9999999999887 88876 8899999999988
Q ss_pred -CCCCCCCCCCC-----CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC
Q 038586 142 -QGEIIHSVPEY-----PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 142 -~~~lP~~l~~L-----~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
...+|..++.+ ++|++|++++|++.+..|.. ++.+.. ++++++++|
T Consensus 132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-------~~~l~~-L~~L~Ls~N 183 (312)
T 1wwl_A 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-------VRVFPA-LSTLDLSDN 183 (312)
T ss_dssp BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-------CCCCSS-CCEEECCSC
T ss_pred CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-------hccCCC-CCEEECCCC
Confidence 44457766666 88999999999888665555 555555 667777777
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-20 Score=183.13 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=83.5
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..|..+..+ ++| ++|++++|++++. .|..|+++++|++|+|++ ...+|..
T Consensus 21 ~~L~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQ--------NYISELWTSDILSL-SKL--RILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCS--------SCCCCCCHHHHTTC-TTC--CEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCC--------CcccccChhhcccc-ccc--cEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCcc-
Confidence 4788888888 88887666788888 888 8888888888886 677888888888888888 6677776
Q ss_pred CCCCCCCEEEccCcccce-ec-------CccccccCCCcCCC-------Cccc--cceeccCCcC
Q 038586 150 PEYPTLFDVEGYMASLVQ-IL-------EKDQHDEGSQNGQQ-------GAEA--EAVCIQHNQA 197 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-~l-------p~~~~L~l~~~~~l-------~~~l--~~l~l~~N~l 197 (353)
.+++|++|++++|.+++ .+ +.+++|+++++... .. + +.+++++|++
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGET 150 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTT-SCEEEEEEEECTT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcccccc-ceeeEEEeecccc
Confidence 78888888888888765 23 34566777665432 22 3 6677777766
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=185.34 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=155.5
Q ss_pred CccccceEecCC-----------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc
Q 038586 59 CCKWRGVCCNNT-----------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~ 127 (353)
.|.|.|+ |+.. ..+++.|++++ |.+++..|.++..+ ++| ++|++++|++++. .|..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------NKITYIGHGDLRAC-ANL--QVLILKSSRINTI-EGDA 69 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------SCCCEECSSTTSSC-TTC--CEEECTTSCCCEE-CTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------CccCccChhhhhcC-Ccc--cEEECCCCCcCcc-Chhh
Confidence 5999998 8532 23789999999 88987778888999 999 9999999999986 6778
Q ss_pred cCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCC
Q 038586 128 VGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS 203 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~ 203 (353)
|+++++|++|++++ ...+|+ .++++++|++|++++|.+++ ..|.. ++.+.. ++++++++|
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~-L~~L~L~~n-------- 133 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTN-LQTLRIGNV-------- 133 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-------CTTCTT-CCEEEEEES--------
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-------hhccCC-ccEEECCCC--------
Confidence 99999999999998 555555 48999999999999999886 45555 667777 899999999
Q ss_pred CCCCccccceeeeCC-cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhh-c
Q 038586 204 SNNNVQTVEFEGEME-HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIEL-L 278 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l-~ 278 (353)
.+.+.+| ..++++++|++|++++|++++..| ..++ .+++|++|+++. +.+|..+ .
T Consensus 134 --------~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~--------~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 134 --------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQS----QSLK--------SIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp --------SSCCEECTTTTTTCCEEEEEEEEETTCCEECT----TTTT--------TCSEEEEEEEECSBSTTHHHHHHH
T ss_pred --------ccccccCHhhhhcccccCeeeccCCcccccCh----hhhh--------ccccCceEecccCcccccchhhHh
Confidence 6444554 678999999999999999999888 8888 899999999987 5566654 4
Q ss_pred CCCCCCEEEccCCCCCC
Q 038586 279 CLDNILEIVESEVEIDS 295 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~ 295 (353)
.+++|++|++++|++..
T Consensus 194 ~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 194 ILSSVRYLELRDTNLAR 210 (549)
T ss_dssp STTTBSEEEEESCBCTT
T ss_pred hcccccEEEccCCcccc
Confidence 68999999999999943
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=160.72 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=153.9
Q ss_pred cccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCC
Q 038586 61 KWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSL 131 (353)
Q Consensus 61 ~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L 131 (353)
.|..+.|... ...++.|++++ |.+++..+..+..+ ++| ++|++++|.++.. .+..|.++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~l~~i-~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQS--------NKLSSLPSKAFHRL-TKL--RLLYLNDNKLQTL-PAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCS--------SCCSCCCTTSSSSC-TTC--CEEECCSSCCSCC-CTTTTSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcC--------CCCCeeCHHHhcCC-CCC--CEEECCCCccCee-ChhhhcCC
Confidence 3677888531 23688999999 89886555678899 999 9999999999985 44457899
Q ss_pred CCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCc
Q 038586 132 SKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNV 208 (353)
Q Consensus 132 ~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l 208 (353)
++|++|++++ ...+|. .+.++++|++|++++|.+++..+.. +..+.. ++++++++|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~Ls~n------------- 143 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------FDSLTK-LTYLSLGYN------------- 143 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS-------------
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH-------hCcCcC-CCEEECCCC-------------
Confidence 9999999998 666665 4689999999999999999766666 677777 999999999
Q ss_pred cccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCC
Q 038586 209 QTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNIL 284 (353)
Q Consensus 209 ~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~ 284 (353)
.+++..+..+..+++|++|++++|++++..+ ..+. .+++|+.|++++ ..+|. .+..+++|+
T Consensus 144 ---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 144 ---ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFD--------KLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp ---CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---cCCccCHhHccCCcccceeEecCCcCcEeCh----hHhc--------cCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 6665555668899999999999999998766 6677 899999999998 55665 477899999
Q ss_pred EEEccCCCC
Q 038586 285 EIVESEVEI 293 (353)
Q Consensus 285 ~L~Ls~N~l 293 (353)
.|++++|.+
T Consensus 209 ~L~l~~N~~ 217 (270)
T 2o6q_A 209 MLQLQENPW 217 (270)
T ss_dssp EEECCSSCB
T ss_pred EEEecCCCe
Confidence 999999999
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=182.82 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|+|++ |.+++..|..|..+ ++| ++|+|++|.+++. .| ++.+++|++|+|++ ...+|.
T Consensus 35 ~L~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~--- 97 (487)
T 3oja_A 35 NVKELDLSG--------NPLSQISAADLAPF-TKL--ELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQELLV--- 97 (487)
T ss_dssp GCCEEECCS--------SCCCCCCGGGGTTC-TTC--CEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEEEEE---
T ss_pred CccEEEeeC--------CcCCCCCHHHHhCC-CCC--CEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCCCCC---
Confidence 567777777 67766556667777 777 7777777777663 33 66777777777776 333332
Q ss_pred CCCCCCEEEccCccccee----cCccccccCCCcCC----------CCccccceeccCCcCCCCCCCCCCCccccceeee
Q 038586 151 EYPTLFDVEGYMASLVQI----LEKDQHDEGSQNGQ----------QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE 216 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~----lp~~~~L~l~~~~~----------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~ 216 (353)
.++|++|++++|.+++. +|.+++|++++|.. +.. ++.|++++| .+++.
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N----------------~l~~~ 159 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLN----------------EIDTV 159 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTS----------------CCCEE
T ss_pred -CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCC----------------CCCCc
Confidence 25666666666666542 23334444444321 122 344555555 56666
Q ss_pred CCcchh-ccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCC
Q 038586 217 MEHSLS-EVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 217 ~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
.|..+. .+++|++|+|++|.+++..+ .. .+++|+.|++++ ..+|+.+..+++|+.|++++|.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~--------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG------QV--------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC------CC--------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ChHHHhhhCCcccEEecCCCccccccc------cc--------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 666665 57777777777777765422 22 466777777777 4456667777777777777777
Q ss_pred CCCCCcccccccCcccchhccccCCC
Q 038586 293 IDSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 293 l~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
+..+|. .++.++.|+.|+...++.
T Consensus 226 l~~lp~--~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 226 LVLIEK--ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEECT--TCCCCTTCCEEECTTCCB
T ss_pred Ccccch--hhccCCCCCEEEcCCCCC
Confidence 766777 666667777666544443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-19 Score=161.89 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=153.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCCCCCcEEeccC--CCCC-CC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSLSKLSLNTVDH--QGEI-IH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~ 147 (353)
.+++.|++++ |.+++..|..+..+ ++| ++|++++|. +... .|..+..+++|++|++++ ...+ |.
T Consensus 56 ~~L~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 123 (285)
T 1ozn_A 56 RNLTILWLHS--------NVLARIDAAAFTGL-ALL--EQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPG 123 (285)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCEEECCC--------CccceeCHhhcCCc-cCC--CEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHh
Confidence 4799999999 89987778889999 999 999999998 8775 588899999999999999 4444 67
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+.++++|++|++++|.+++..+.. +..+.. ++++++++| ++++..+..+..+++|
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDT-------FRDLGN-LTHLFLHGN----------------RISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCEECTTTTTTCTTC
T ss_pred HhhCCcCCCEEECCCCcccccCHhH-------hccCCC-ccEEECCCC----------------cccccCHHHhcCcccc
Confidence 7899999999999999998655555 666777 999999999 7776666679999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhcCCCCCCEEEccCCCC-CCCC
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
++|++++|++++..| ..++ .+++|+.|++++ ..+| ..+..+++|++|++++|++ ...+
T Consensus 180 ~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHP----HAFR--------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCcccccCH----hHcc--------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 999999999999888 8888 899999999999 4455 4588999999999999999 4433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=162.56 Aligned_cols=173 Identities=12% Similarity=0.035 Sum_probs=153.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++ +|.. +.+++|++|++++ ...+|..+
T Consensus 31 ~~l~~L~L~~--------N~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 31 KDTTILHLSE--------NLLYTFSLATLMPY-TRL--TQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp TTCCEEECTT--------SCCSEEEGGGGTTC-TTC--CEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCEEEcCC--------CcCCccCHHHhhcC-CCC--CEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhh
Confidence 4789999999 99987778889999 999 999999999998 5554 8999999999999 78899999
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
..+++|++|++++|++++..|.. +..+.. ++++++++| ++++..+..|..+++|++
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~-------~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGA-------LRGLGE-LQELYLKGN----------------ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST-------TTTCTT-CCEEECTTS----------------CCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCcccCHHH-------HcCCCC-CCEEECCCC----------------CCCccChhhcccccCCCE
Confidence 99999999999999999666666 777777 999999999 666555667889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
|++++|++++..+ ..+. .+++|+.|++++ ..+|..+..+.+|+.+++++|.+.
T Consensus 153 L~L~~N~l~~l~~----~~~~--------~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPA----GLLN--------GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCH----HHhc--------CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 9999999987655 5567 899999999999 889999999999999999999983
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=178.05 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=39.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l 165 (353)
|.+++..|..+.++ ++| ++|++++|.+++ +|+ .|+++++|++|++++ ...+| ..++++++|++|++++|.+
T Consensus 59 n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 59 NTISKLEPELCQKL-PML--KVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp SCCCCCCTTHHHHC-TTC--CEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CccCccCHHHHhcc-cCc--CEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 45554445555555 555 555555555555 333 355555566666555 33333 3455566666666666555
Q ss_pred ce
Q 038586 166 VQ 167 (353)
Q Consensus 166 ~g 167 (353)
++
T Consensus 134 ~~ 135 (680)
T 1ziw_A 134 SS 135 (680)
T ss_dssp SC
T ss_pred cc
Confidence 44
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=178.96 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=87.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..|.+|..+ ++| ++|++++|.+++. .|..|.++++|++|+|++ ...+|..
T Consensus 52 ~~L~~L~Ls~--------N~i~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQ--------NSISELRMPDISFL-SEL--RVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp TTCCEEECCS--------SCCCCCCGGGTTTC-TTC--CEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCcCEEECCC--------CCccccChhhhccC-CCc--cEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 4789999999 88887667788899 999 9999999999986 688899999999999998 6678877
Q ss_pred CCCCCCCEEEccCcccce-e-------cCccccccCCCcCCCC-------c-cccceeccCCcC
Q 038586 150 PEYPTLFDVEGYMASLVQ-I-------LEKDQHDEGSQNGQQG-------A-EAEAVCIQHNQA 197 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-~-------lp~~~~L~l~~~~~l~-------~-~l~~l~l~~N~l 197 (353)
.+++|++|++++|++++ . ++.+++|+++++.... . .++.+++++|++
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 79999999999998875 2 3455677776654321 2 026677777766
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=157.55 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=142.8
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
+..+ ++| +.|++++|.++. ++ .+..+++|++|++++ ...+ +.++++++|++|++++|.+++..+..
T Consensus 37 ~~~l-~~L--~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~----- 104 (272)
T 3rfs_A 37 QNEL-NSI--DQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGV----- 104 (272)
T ss_dssp HHHH-TTC--CEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTT-----
T ss_pred cccc-cce--eeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhH-----
Confidence 4566 778 888888888775 33 477788888888887 4344 36778888888888888887655555
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNK 257 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~ 257 (353)
+..+.. ++++++++| ++++..+..++.+++|++|++++|++++..+ ..++
T Consensus 105 --~~~l~~-L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~------- 154 (272)
T 3rfs_A 105 --FDKLTN-LKELVLVEN----------------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----GVFD------- 154 (272)
T ss_dssp --TTTCTT-CCEEECTTS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT-------
T ss_pred --hcCCcC-CCEEECCCC----------------cCCccCHHHhccCCCCCEEECCCCccCccCH----HHhc-------
Confidence 556666 788888888 6665556667788888888888888877666 5566
Q ss_pred cCCCccceeecCC---CCCch-hhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccccccccccc-c-c
Q 038586 258 QQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVA-W-E 331 (353)
Q Consensus 258 ~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~-~ 331 (353)
.+++|+.|++++ ..+|. .+..+++|++|++++|++..+|+. .++.++.|+.|+...++..+.|..++.+. | +
T Consensus 155 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 155 -KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp -TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred -cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 788888888887 34443 467788888888888888444431 57788888888887777777777776654 2 4
Q ss_pred ccccCCChHH
Q 038586 332 EEMGPLPVEF 341 (353)
Q Consensus 332 ~~~~~lp~~~ 341 (353)
.+.|.+|..+
T Consensus 233 ~~~g~ip~~~ 242 (272)
T 3rfs_A 233 KHSGVVRNSA 242 (272)
T ss_dssp HTGGGBBCTT
T ss_pred hCCCcccCcc
Confidence 5677777544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=169.74 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=102.1
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce--ecCccccccCCCcCC---
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ--ILEKDQHDEGSQNGQ--- 182 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g--~lp~~~~L~l~~~~~--- 182 (353)
++|++++|.+++. .|..|.++++|++|+|++ ...+++ +..+++|++|++++|++++ ..|.+++|+++++..
T Consensus 37 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 37 KELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (317)
T ss_dssp SEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred CEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence 4444444444443 333444444444444444 111221 4444444444444444443 223334444443321
Q ss_pred ----CCccccceeccCCcCCCCCCCC---CCCcc-----ccceeeeCCcchh-ccCCCCEEEcccCcCcccCCCCCcccc
Q 038586 183 ----QGAEAEAVCIQHNQANDIPCSS---NNNVQ-----TVEFEGEMEHSLS-EVYDIFDVERYSSSLDQILESERTEDH 249 (353)
Q Consensus 183 ----l~~~l~~l~l~~N~l~~i~~~~---~~~l~-----~~~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 249 (353)
... ++++++++|+++.++... ...++ ...+++..|..+. .+++|++|++++|++++. | ..
T Consensus 115 ~~~~~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-----~~ 187 (317)
T 3o53_A 115 SCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-----GQ 187 (317)
T ss_dssp EECCCSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-----CC
T ss_pred CccccCC-CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-----cc
Confidence 122 455566666555443211 11222 2245555555553 567777777777777654 2 12
Q ss_pred chhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCc
Q 038586 250 GDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRD 319 (353)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~ 319 (353)
. .+++|+.|++++ ..+|..+..+++|++|++++|++..+|+ .+..++.|+.|+...++..
T Consensus 188 ~--------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 V--------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C--------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred c--------ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCcc
Confidence 2 467777787777 4556667777788888888888777777 6777777777776655554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-20 Score=181.03 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=113.5
Q ss_pred CCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccce--ecCccccccCCCcCCCCccccceeccCCcCCCCCCC
Q 038586 129 GSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQ--ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS 203 (353)
Q Consensus 129 ~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g--~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~ 203 (353)
..+++|++|++++ .+.+|..++++++|++|++++|++++ .+|.. +..+.. ++++++++|
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------~~~l~~-L~~L~Ls~N-------- 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM-------TTQMKS-LQQLDISQN-------- 384 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-------HTTCTT-CCEEECCSS--------
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH-------HhhCCC-CCEEECCCC--------
Confidence 3445555555554 33344445555555555555555543 33333 333444 556666666
Q ss_pred CCCCccccceeeeCCcc-hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcC
Q 038586 204 SNNNVQTVEFEGEMEHS-LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLC 279 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~ 279 (353)
.+++.+|.. +..+++|++|++++|++++.+| ..+. ++|+.|++++ ..+|..+..
T Consensus 385 --------~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~----------~~L~~L~Ls~N~l~~ip~~~~~ 442 (520)
T 2z7x_B 385 --------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF----RCLP----------PRIKVLDLHSNKIKSIPKQVVK 442 (520)
T ss_dssp --------CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG----GSCC----------TTCCEEECCSSCCCCCCGGGGG
T ss_pred --------cCCcccccchhccCccCCEEECcCCCCCcchh----hhhc----------ccCCEEECCCCcccccchhhhc
Confidence 666555554 6778888889999888887666 3322 6899999998 789998889
Q ss_pred CCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccccccccc-ccc
Q 038586 280 LDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQA-VAW 330 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~-~~~ 330 (353)
+++|++|++++|++..+|.. .|..++.|+.|+...++..+.|...+. ..|
T Consensus 443 l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence 99999999999999889982 388999999999999999999986665 456
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=180.92 Aligned_cols=227 Identities=15% Similarity=0.079 Sum_probs=160.6
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCC-cccCCCCCCcEEeccC---CCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVP-EFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P-~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.++.+++++ |.+++..|..+..+ ++| ++|++++|.+++. +| ..+.++++|++|++++ .+..|..
T Consensus 382 ~L~~L~L~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 382 PLHILNLTK--------NKISKIESDAFSWL-GHL--EVLDLGLNEIGQE-LTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp CCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCEEE-CCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred cCceEECCC--------CCCCeEChhhhhCC-CCC--CEEeCCCCcCccc-cCcccccCcccccEEecCCCCcceeChhh
Confidence 678888888 77877777777777 888 8888888888765 55 5677788888888877 3334556
Q ss_pred CCCCCCCCEEEccCcccc--eecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccccce-----eee--
Q 038586 149 VPEYPTLFDVEGYMASLV--QILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTVEF-----EGE-- 216 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~--g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~~l-----~g~-- 216 (353)
+..+++|++|++++|.+. +.+|.. +..+.. ++.+++++|+++.++.. ....++.+.+ ++.
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~-------~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSP-------FQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCT-------TTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred hhcCcccccchhccccccccccCCcc-------cccCCC-CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch
Confidence 667777777777777665 344544 444444 55556666555554432 1222222222 211
Q ss_pred ------CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEE
Q 038586 217 ------MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEI 286 (353)
Q Consensus 217 ------~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L 286 (353)
.+..+.++++|++|++++|+++...+ ..++ ++++|+.|++++ ..+|.. +..+++|++|
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFK--------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCCCH----HHcc--------cccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 12347889999999999999986444 5677 899999999998 666665 6789999999
Q ss_pred EccCCCCCCCCcccccc-cCcccchhccccCCCcccccc-cccccccc
Q 038586 287 VESEVEIDSLPDRLVFD-VREFLSELDQIAEPRDEECGK-LQAVAWEE 332 (353)
Q Consensus 287 ~Ls~N~l~~iP~~~~~~-~l~~L~~Ld~~~~~~~~~c~~-l~~~~~~~ 332 (353)
++++|++..+|+. .|+ .++.|+.++...++..+.|.. .+...|.+
T Consensus 590 ~L~~N~l~~~~~~-~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 590 NLQKNLITSVEKK-VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp ECTTSCCCBCCHH-HHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred ECCCCcCCccChh-HhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 9999999666552 566 788999999999999999996 55566743
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=155.03 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=150.9
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
++++++++.++. +|..+. +++++|+|++ . +..|..++++++|++|++++|.+++..|.. +..+..
T Consensus 17 ~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~- 84 (251)
T 3m19_A 17 KEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-------FDDLTE- 84 (251)
T ss_dssp TEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-
T ss_pred eEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-------hccCCc-
Confidence 889999999998 788776 6999999999 4 444557999999999999999999877766 677777
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|++++| .+++..+..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 85 L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 136 (251)
T 3m19_A 85 LGTLGLANN----------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFD--------RLTKLKEL 136 (251)
T ss_dssp CCEEECTTS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred CCEEECCCC----------------cccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhc--------cCCcccEE
Confidence 999999999 6666666778899999999999999997666 6677 89999999
Q ss_pred ecCC---CCCch-hhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccc-ccccccccc
Q 038586 267 LLAQ---QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEE-CGKLQAVAW 330 (353)
Q Consensus 267 ~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~-c~~l~~~~~ 330 (353)
++++ ..+|. .+..+++|++|+|++|++..+|+. .|..++.|+.|+...++..+. |...+...|
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 9999 55665 688999999999999999555542 688999999999988888777 665444455
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=166.74 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=109.5
Q ss_pred cCCcccccHHH--HHhhccccccEEEeecCCCCCCCCC----cccCCCCCCcEEeccC--C-CCCCCCCCCCCCCCEEEc
Q 038586 90 KILKGTISSAL--LLCLNCMIYDIWTLVTINFGGIPVP----EFVGSLSKLSLNTVDH--Q-GEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 90 ~~l~g~lp~~l--~~L~~~L~~~~L~Ls~N~l~~~~~P----~~~~~L~~L~~L~Ls~--~-~~lP~~l~~L~~L~~L~L 160 (353)
|.+.+.+|..+ ..+ ++| ++|++++|.+++. .| ..+..+++|++|+|++ . +..|..++++++|++|++
T Consensus 101 n~l~~~~~~~~~~~~~-~~L--~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 176 (310)
T 4glp_A 101 LKITGTMPPLPLEATG-LAL--SSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDL 176 (310)
T ss_dssp CCCBSCCCCCSSSCCC-BCC--SSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEEC
T ss_pred CEeccchhhhhhhccC-CCC--CEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEEC
Confidence 55555555444 444 555 5555555555543 33 1233455555555555 2 222334555555555555
Q ss_pred cCccccee--cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee--eCCc-chhccCCCCEEEcccC
Q 038586 161 YMASLVQI--LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG--EMEH-SLSEVYDIFDVERYSS 235 (353)
Q Consensus 161 s~N~l~g~--lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g--~~p~-~l~~l~~L~~L~Ls~N 235 (353)
++|++.+. ++... ..+.+.. ++++++++| +++. ..+. .++.+++|++|++++|
T Consensus 177 s~N~l~~~~~~~~~~-----~~~~l~~-L~~L~Ls~N----------------~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 177 SDNPGLGERGLMAAL-----CPHKFPA-IQNLALRNT----------------GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CSCTTCHHHHHHTTS-----CTTSSCC-CCSCBCCSS----------------CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CCCCCccchhhhHHH-----hhhcCCC-CCEEECCCC----------------CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 55554331 11110 0122333 556666666 4431 1122 2467899999999999
Q ss_pred cCcccCCCCCccccchhhhhcccCC---CccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccc
Q 038586 236 SLDQILESERTEDHGDAAIQNKQQE---AVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLS 309 (353)
Q Consensus 236 ~l~g~~p~~~~~~~~~~~~~~~~~l---~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~ 309 (353)
++.+..| ..++ .+ ++|++|++++ ..+|..+. ++|++|++++|++..+|. +..++.|+
T Consensus 235 ~l~~~~p----~~~~--------~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~---~~~l~~L~ 297 (310)
T 4glp_A 235 SLRATVN----PSAP--------RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ---PDELPEVD 297 (310)
T ss_dssp CCCCCCC----SCCS--------SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC---TTSCCCCS
T ss_pred CCCccch----hhHH--------hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch---hhhCCCcc
Confidence 9988777 5666 44 6899999988 67777764 799999999999976655 56677888
Q ss_pred hhccccCC
Q 038586 310 ELDQIAEP 317 (353)
Q Consensus 310 ~Ld~~~~~ 317 (353)
.|+...++
T Consensus 298 ~L~L~~N~ 305 (310)
T 4glp_A 298 NLTLDGNP 305 (310)
T ss_dssp CEECSSTT
T ss_pred EEECcCCC
Confidence 87765554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-19 Score=178.79 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-----CCCCCcc-----ccceeeeCCc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-----SSNNNVQ-----TVEFEGEMEH 219 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-----~~~~~l~-----~~~l~g~~p~ 219 (353)
+.+++|++|++++|++++.+|.. +..+.. ++++++++|+++.++. .....++ ...+++.+|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-------CSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-------CCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cCCCCceEEECCCCccccchhhh-------hcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 45566666666666666555544 444444 5666666665554331 1112222 2255554554
Q ss_pred -chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 220 -SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 220 -~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
.+..+++|++|++++|++++.+| ..++ ++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~----~~l~----------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVF----RCLP----------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGG----SSCC----------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchh----hhhc----------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC
Confidence 36778888889998888877666 3221 6899999998 7899988899999999999999988
Q ss_pred CCcccccccCcccchhccccCCCccccccccccc-c
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQAVA-W 330 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~ 330 (353)
+|+. .|..++.|+.|+...++..+.|...+.+. |
T Consensus 488 l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 522 (562)
T 3a79_B 488 VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522 (562)
T ss_dssp CCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHHHH
T ss_pred CCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHHHH
Confidence 9982 38999999999999999999998766655 5
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=155.02 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=136.5
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEe
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
.|.|.+|.|.. ++++ .+|..+ . ++| ++|++++|.+++. .+..+..+++|++|+
T Consensus 6 ~C~~~~v~c~~--------------------~~l~-~~p~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 58 (208)
T 2o6s_A 6 SCSGTTVECYS--------------------QGRT-SVPTGI--P-AQT--TYLDLETNSLKSL-PNGVFDELTSLTQLY 58 (208)
T ss_dssp EEETTEEECCS--------------------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred EECCCEEEecC--------------------CCcc-CCCCCC--C-CCC--cEEEcCCCccCcC-ChhhhcccccCcEEE
Confidence 47899999964 3333 344322 3 677 8999999999875 455678899999999
Q ss_pred ccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 139 VDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 139 Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
+++ ...+|.. +.++++|++|++++|++++..+.. +..+.. ++++++++| ++++
T Consensus 59 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~ 114 (208)
T 2o6s_A 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-------FDKLTQ-LKELALNTN----------------QLQS 114 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCC
T ss_pred CCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH-------hcCccC-CCEEEcCCC----------------cCcc
Confidence 988 5566654 578899999999999888554444 556666 888999999 6665
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCC-C
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEI-D 294 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~ 294 (353)
..+..+..+++|++|++++|++++..+ ..++ .+++|+.|++++..+ ...+++|+.|+++.|++ |
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~--------~l~~L~~L~l~~N~~---~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFD--------RLTSLQYIWLHDNPW---DCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCT----TTTT--------TCTTCCEEECCSCCB---CCCTTTTHHHHHHHHHCTT
T ss_pred cCHhHhccCCcCCEEECCCCccceeCH----HHhc--------cCCCccEEEecCCCe---ecCCCCHHHHHHHHHhCCc
Confidence 555667889999999999999987666 5577 888999999988432 24567889999999999 8
Q ss_pred CCCcccccccCcc
Q 038586 295 SLPDRLVFDVREF 307 (353)
Q Consensus 295 ~iP~~~~~~~l~~ 307 (353)
.+|+ .++.++.
T Consensus 180 ~ip~--~~~~l~~ 190 (208)
T 2o6s_A 180 VVRN--SAGSVAP 190 (208)
T ss_dssp TBBC--TTSSBCT
T ss_pred eeec--cCccccC
Confidence 9998 6666543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-20 Score=170.23 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=123.7
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC-------CC
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-------SL 131 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-------~L 131 (353)
|+.+..+.......+++.+++++ |.+ .+|..+... | ++|++++|.++...+|..+. ++
T Consensus 30 c~~~~~~~~~~~~~~L~~l~l~~--------n~l--~~p~~~~~~---L--~~L~L~~n~l~~~~~~~~~~~~~~~~~~l 94 (312)
T 1wwl_A 30 CLGAADVELYGGGRSLEYLLKRV--------DTE--ADLGQFTDI---I--KSLSLKRLTVRAARIPSRILFGALRVLGI 94 (312)
T ss_dssp SSSCSEEEEEEEEEECTTHHHHC--------CTT--CCCHHHHHH---H--HHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred hhccccEEEEccCCCceeEeecc--------ccc--ccHHHHHHH---H--hhcccccccccCCCcCHHHHHHHHHhcCc
Confidence 44454443322223566677777 777 677765532 5 77788888874333676665 68
Q ss_pred CCCcEEeccC---CCCCCCCC--CCCCCCCEEEccCcccceecCccccccCCCcCCC-----CccccceeccCCcCCCCC
Q 038586 132 SKLSLNTVDH---QGEIIHSV--PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQ-----GAEAEAVCIQHNQANDIP 201 (353)
Q Consensus 132 ~~L~~L~Ls~---~~~lP~~l--~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l-----~~~l~~l~l~~N~l~~i~ 201 (353)
++|++|++++ .+.+|..+ +.+++|++|++++|++++. |.. ++.+ .. ++++++++|++..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-------~~~l~~~~~~~-L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-------LAELQQWLKPG-LKVLSIAQAHSLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-------HHHHHTTCCTT-CCEEEEESCSCCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-------HHHHHHhhcCC-CcEEEeeCCCCccch
Confidence 8888888888 55777765 7888888888888888765 544 3333 44 788888888665554
Q ss_pred CC---CCCCccccceeee-------CCcch--hccCCCCEEEcccCcCccc--CCCCCccccchhhhhcccCCCccceee
Q 038586 202 CS---SNNNVQTVEFEGE-------MEHSL--SEVYDIFDVERYSSSLDQI--LESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 202 ~~---~~~~l~~~~l~g~-------~p~~l--~~l~~L~~L~Ls~N~l~g~--~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
.. ....++.+.+.+. +|..+ ..+++|++|++++|++++. ++ ...+. .+++|+.|+
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~--------~l~~L~~L~ 234 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC---SALAA--------ARVQLQGLD 234 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH---HHHHH--------TTCCCSEEE
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH---HHHHh--------cCCCCCEEE
Confidence 22 1223333333221 12233 5555666666666655421 11 01112 455666666
Q ss_pred cCC----CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 268 LAQ----QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 268 L~~----~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++ +.+| ..+..+++|++|++++|+++.+|. .+. +.|+.||..
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLS 282 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECC
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECC
Confidence 666 2222 233445666666666666666666 333 555555543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=180.18 Aligned_cols=212 Identities=15% Similarity=0.143 Sum_probs=149.9
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC---CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE---IIH 147 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~---lP~ 147 (353)
+++.|++++ +.+. .+|. ..+ ++| ++|++++|.+.+. +|. ..+++|++|++++ ... +|.
T Consensus 305 ~L~~L~l~~--------n~~~-~l~~--~~l-~~L--~~L~l~~n~~~~~-~~~--~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 305 GWQHLELVN--------CKFG-QFPT--LKL-KSL--KRLTFTSNKGGNA-FSE--VDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp CCSEEEEES--------CBCS-SCCB--CBC-SSC--CEEEEESCBSCCB-CCC--CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred CccEEeecc--------Cccc-ccCc--ccc-ccc--CEEeCcCCccccc-ccc--ccCCCCCEEeCcCCccCccccccc
Confidence 566777777 6665 5554 345 666 7777777766654 333 5666677777666 221 244
Q ss_pred CCCCCCCCCEEEccCccccee------cCccccccCCCc-----------CCCCccccceeccCCcCCCCCCCCCCCccc
Q 038586 148 SVPEYPTLFDVEGYMASLVQI------LEKDQHDEGSQN-----------GQQGAEAEAVCIQHNQANDIPCSSNNNVQT 210 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~------lp~~~~L~l~~~-----------~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~ 210 (353)
.+..+++|++|++++|.+.+. ++.+++|+++++ ..+.. ++++++++|
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n--------------- 431 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHT--------------- 431 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT-CCEEECTTS---------------
T ss_pred cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC-CCEEeCcCC---------------
Confidence 556666666666666665532 122233333222 22233 455566666
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCc-ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCE
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLD-QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILE 285 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~-g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~ 285 (353)
.+.+..|..+..+++|++|++++|++. +.+| ..++ .+++|+.|++++ +..|..+..+++|++
T Consensus 432 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 432 -HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFT--------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp -CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCT--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -cccccchhhhhcCCcCcEEECcCCcCccccch----hhhh--------cccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 777888889999999999999999997 6788 7888 899999999998 444778999999999
Q ss_pred EEccCCCCCCCCcccccccCcccchhccccCCCcccccccccc-ccc
Q 038586 286 IVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAV-AWE 331 (353)
Q Consensus 286 L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~-~~~ 331 (353)
|++++|++..+|+. .|..++.|+.|+...++..+.|...+.+ .|-
T Consensus 499 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 499 LNMASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544 (570)
T ss_dssp EECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred EeCCCCcCCCCCHH-HhhcccCCcEEEecCCcccCCCcchHHHHHHH
Confidence 99999999544431 6899999999999999999999988877 773
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=182.11 Aligned_cols=191 Identities=13% Similarity=-0.018 Sum_probs=155.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~~ 148 (353)
.+++.|++++ |.+++..+..|.++ ++| ++|++++|.+++. .|..|+++++|++|+|++ . +..|..
T Consensus 32 ~~l~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSF--------NPLKILKSYSFSNF-SEL--QWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCC--------CCcCEeChhhccCC-ccC--cEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhh
Confidence 5799999999 99997777789999 999 9999999999997 688899999999999998 4 444888
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L 227 (353)
|+++++|++|++++|.+++..|.. ++.+.. ++++++++| .+++ .+|..++++++|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~n----------------~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFP-------IGQLIT-LKKLNVAHN----------------FIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGTCTTC
T ss_pred cCCcccCCEEEccCCccccccccc-------cCCCCC-CCEEeCCCC----------------cccceechHhHhhcCCC
Confidence 999999999999999998665566 677777 999999999 6664 578999999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccc----eeecCC---CCCchhhcCCCCCCEEEccCCCC--CCCCc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE----EALLAQ---QNDPIELLCLDNILEIVESEVEI--DSLPD 298 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~----~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l--~~iP~ 298 (353)
++|++++|++++..| ..++ .++.|+ .+++++ ..+|.......+|++|++++|.+ +.+|.
T Consensus 156 ~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 156 VHVDLSYNYIQTITV----NDLQ--------FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CEEECCSSCCCEECT----TTTH--------HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHH
T ss_pred CEEEccCCcceecCh----hhhh--------hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHH
Confidence 999999999998777 6666 555554 788888 45565555556899999999988 34555
Q ss_pred ccccccCcccchhc
Q 038586 299 RLVFDVREFLSELD 312 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld 312 (353)
.++.++.++.++
T Consensus 224 --~~~~l~~L~~l~ 235 (606)
T 3vq2_A 224 --CLQNLAGLHVHR 235 (606)
T ss_dssp --HHHTTTTCEEEE
T ss_pred --Hhcccccccccc
Confidence 556666555443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=161.24 Aligned_cols=211 Identities=10% Similarity=0.033 Sum_probs=158.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC-CCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE-IIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~-lP~~l 149 (353)
+++.+++++ ++++ .+|..+ . ++| ++|++++|.+++. .|..|.++++|++|++++ ... .|..+
T Consensus 34 ~l~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSD--------LGLK-AVPKEI--S-PDT--TLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCS--------SCCS-SCCSCC--C-TTC--CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCC--------CCcc-ccCCCC--C-CCC--eEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 467789999 8887 788654 3 788 9999999999986 577899999999999998 444 47789
Q ss_pred CCCCCCCEEEccCcccceecC-----ccccccCCCcC----------CCCccccceeccCCcCCC--CCCCC--CCCccc
Q 038586 150 PEYPTLFDVEGYMASLVQILE-----KDQHDEGSQNG----------QQGAEAEAVCIQHNQAND--IPCSS--NNNVQT 210 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp-----~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~--i~~~~--~~~l~~ 210 (353)
+++++|++|++++|+++ .+| .+++|+++++. .+.. ++.+++++|+++. +.... ...++.
T Consensus 99 ~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~L~~ 176 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNY 176 (332)
T ss_dssp TTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSCCCSC
T ss_pred hCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCCccCE
Confidence 99999999999999987 444 45677766542 2333 5677777777653 21111 113333
Q ss_pred cceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCC-chhhcCCCC
Q 038586 211 VEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND-PIELLCLDN 282 (353)
Q Consensus 211 ~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i-P~~l~~l~~ 282 (353)
+.+.+ .+|..+. ++|++|++++|++++..| ..++ .+++|+.|++++ ..+ |..+..+++
T Consensus 177 L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~----~~l~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL----EDLL--------RYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp CBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT----TSST--------TCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred EECcCCCCCccCcccc--CCCCEEECCCCcCCccCH----HHhc--------CCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 33222 2444443 678888888888887777 6777 899999999998 344 457889999
Q ss_pred CCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 283 ILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 283 L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
|++|++++|++..+|. .+..++.|+.|+...+
T Consensus 243 L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCEEECCSSCCCBCCT--TGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCeecCh--hhhcCccCCEEECCCC
Confidence 9999999999999999 8999999999986544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=185.66 Aligned_cols=218 Identities=13% Similarity=0.046 Sum_probs=127.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+++..|..+..+ ++| ++|+|++|.+++. .|..|..+++|++|++++ ...++ ..+.++++|++|++++|.++
T Consensus 300 n~i~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 300 NKINKIADEAFYGL-DNL--QVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCCCEECTTTTTTC-SSC--CEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CcCCCCChHHhcCC-CCC--CEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 66666666666667 777 7777777777765 566677777777777776 44443 34666777777777777765
Q ss_pred e--ecCccccccCCCcCC-------------------------------CCccccceeccCCcCCCCCCC----CCCCcc
Q 038586 167 Q--ILEKDQHDEGSQNGQ-------------------------------QGAEAEAVCIQHNQANDIPCS----SNNNVQ 209 (353)
Q Consensus 167 g--~lp~~~~L~l~~~~~-------------------------------l~~~l~~l~l~~N~l~~i~~~----~~~~l~ 209 (353)
+ .+|.++.++++++.. +.. ++.+++++|+++.++.. ....++
T Consensus 376 ~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 454 (844)
T 3j0a_A 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLE 454 (844)
T ss_dssp CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred cccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccc
Confidence 3 233444444443321 122 34455555554433211 112233
Q ss_pred cccee----------eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh
Q 038586 210 TVEFE----------GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE 276 (353)
Q Consensus 210 ~~~l~----------g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~ 276 (353)
.+.+. +..|..+..+++|++|+|++|++++..| ..++ .+++|+.|++++ ..+|+.
T Consensus 455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP----GVFS--------HLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT----TSSS--------SCCSCSEEEEESCCCSSCCCC
T ss_pred cccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh----hHcc--------chhhhheeECCCCCCCccChh
Confidence 32222 2233445666666667777666666665 5556 677777777776 334433
Q ss_pred hcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 277 LLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 277 l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
... ++|+.|++++|++ +..|. .|. .|+.++...++..+.|...+...|
T Consensus 523 ~~~-~~L~~L~Ls~N~l~~~~~~--~~~---~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 523 DLP-ANLEILDISRNQLLAPNPD--VFV---SLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp CCC-SCCCEEEEEEECCCCCCSC--CCS---SCCEEEEEEECCCCSSSCCSHHHH
T ss_pred hhh-ccccEEECCCCcCCCCChh--HhC---CcCEEEecCCCcccccccHHHHHH
Confidence 222 6677777777777 55555 443 566677777888888886555555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-19 Score=163.40 Aligned_cols=190 Identities=9% Similarity=0.009 Sum_probs=147.4
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccCcccce-----ecCccccccCCCcC
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNG 181 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~ 181 (353)
+..+++.+.+... .+..+..+++|++|+|++ ...+ |..++++++|++|++++|.+++ .++.+++|+++++.
T Consensus 13 ~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 5666667766553 344566788999999999 4444 4678999999999999999985 45678899998874
Q ss_pred CC-----CccccceeccCCcCCCCCCCCCCCccccc-----eeeeCCcchhccCCCCEEEcccCcCcccCCCCCcccc-c
Q 038586 182 QQ-----GAEAEAVCIQHNQANDIPCSSNNNVQTVE-----FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDH-G 250 (353)
Q Consensus 182 ~l-----~~~l~~l~l~~N~l~~i~~~~~~~l~~~~-----l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~-~ 250 (353)
.. .. ++++++++|+++.++......++.+. +++..|..++.+++|++|++++|++++..| ..+ +
T Consensus 92 l~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 166 (317)
T 3o53_A 92 VQELLVGPS-IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAA 166 (317)
T ss_dssp EEEEEECTT-CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG----GGGGG
T ss_pred cccccCCCC-cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH----HHHhh
Confidence 33 33 78899999999887665555555444 444556688889999999999999988666 444 3
Q ss_pred hhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.+++|+.|++++ ..+|. ...+++|++|++++|++..+|+ .+..++.|+.|+...+
T Consensus 167 --------~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 167 --------SSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN 224 (317)
T ss_dssp --------GTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS
T ss_pred --------ccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCC
Confidence 689999999999 33443 3358999999999999988998 7899999999987554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=159.68 Aligned_cols=190 Identities=9% Similarity=0.008 Sum_probs=143.6
Q ss_pred CcEEEEEcCCCCCccccccCCc--ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-
Q 038586 72 SHFKVLNLRSSNDENARRKILK--GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII- 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~--g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP- 146 (353)
.+++.|++++ |.++ |.+|..+..+ ++| ++|++++|.++. +|..+..+++|++|++++ ...++
T Consensus 52 ~~L~~L~L~~--------n~l~~~~~~~~~~~~~-~~L--~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~ 118 (306)
T 2z66_A 52 TQLTKLSLSS--------NGLSFKGCCSQSDFGT-TSL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSE 118 (306)
T ss_dssp TTCSEEECCS--------SCCCEEEEEEHHHHSC-SCC--CEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTT
T ss_pred ccCCEEECCC--------CccCcccCcccccccc-ccc--CEEECCCCcccc--ChhhcCCCCCCCEEECCCCccccccc
Confidence 4788899999 7776 4457778888 899 999999999886 788888899999999988 44444
Q ss_pred -CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCC--CCCC--CCCCc-----cccceeee
Q 038586 147 -HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND--IPCS--SNNNV-----QTVEFEGE 216 (353)
Q Consensus 147 -~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~--i~~~--~~~~l-----~~~~l~g~ 216 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++|++.+ +|.. ....+ ....+++.
T Consensus 119 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECSTTT-------TTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred chhhhhccCCCEEECCCCcCCccchhh-------cccCcC-CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 46788889999999998887665544 444444 5555555555443 2211 11122 22267777
Q ss_pred CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC-CCCCEEEccCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL-DNILEIVESEV 291 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l-~~L~~L~Ls~N 291 (353)
.|..+..+++|++|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+ ++|++|++++|
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK--------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCS----GGGT--------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCccCh----hhcc--------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 78899999999999999999998766 6677 899999999999 5567778888 49999999999
Q ss_pred CCC
Q 038586 292 EID 294 (353)
Q Consensus 292 ~l~ 294 (353)
.+.
T Consensus 259 ~~~ 261 (306)
T 2z66_A 259 DFA 261 (306)
T ss_dssp CEE
T ss_pred Cee
Confidence 993
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=179.50 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=133.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc--cCCCCCCcEEeccC--CCCC--C
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF--VGSLSKLSLNTVDH--QGEI--I 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~--~~~L~~L~~L~Ls~--~~~l--P 146 (353)
+++.|+|++ |.+.+..|..|..+ ++| ++|+|++|.+++. +|.. ++++++|++|+|++ ...+ +
T Consensus 74 ~L~~L~Ls~--------N~l~~~~p~~~~~l-~~L--~~L~Ls~n~l~~~-~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 74 NLRILDLGS--------SKIYFLHPDAFQGL-FHL--FELRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp TCCEEECTT--------CCCCEECTTSSCSC-SSC--CCEECTTCCCSSC-CSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred CCCEEECCC--------CcCcccCHhHccCC-ccc--CEeeCcCCCCCcc-cccCccccccCCCCEEECCCCcccccccc
Confidence 445555555 55555555555566 666 6666666666554 4443 55666666666665 2222 2
Q ss_pred CCCCCCCCCCEEEccCcccceec---------CccccccCCCcCCCCc---------------cccceeccCCcCCC-CC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQIL---------EKDQHDEGSQNGQQGA---------------EAEAVCIQHNQAND-IP 201 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~l---------p~~~~L~l~~~~~l~~---------------~l~~l~l~~N~l~~-i~ 201 (353)
..++++++|++|++++|.+++.. +.+++|+++.+..... .++.+++++|++.. ++
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 34566666666666666654422 2344445444422211 14566666665432 11
Q ss_pred CC----------------------------------------CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCc
Q 038586 202 CS----------------------------------------SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 202 ~~----------------------------------------~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~ 236 (353)
.. ....++ ...+.+..|..+..+++|+.|++++|+
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 00 001122 223445567778888888999999888
Q ss_pred CcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhc
Q 038586 237 LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELD 312 (353)
Q Consensus 237 l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld 312 (353)
+++..| ..++ .+++|+.|++++ +..|..+..+++|++|++++|.++.+|+. .|..++.|+.|+
T Consensus 302 i~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~ 368 (844)
T 3j0a_A 302 INKIAD----EAFY--------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLD 368 (844)
T ss_dssp CCEECT----TTTT--------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEE
T ss_pred CCCCCh----HHhc--------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEE
Confidence 888777 7777 888899999888 33466788888999999999988665542 678888888887
Q ss_pred cccC
Q 038586 313 QIAE 316 (353)
Q Consensus 313 ~~~~ 316 (353)
...+
T Consensus 369 Ls~N 372 (844)
T 3j0a_A 369 LRDN 372 (844)
T ss_dssp EETC
T ss_pred CCCC
Confidence 6443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=163.66 Aligned_cols=181 Identities=15% Similarity=0.032 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|+|++ |.+++..|..|..+ ++| ++|+|++|.+++. .+..|..+++|++|+|++ ...+|. .
T Consensus 99 ~~L~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 166 (452)
T 3zyi_A 99 HHLEVLQLGR--------NSIRQIEVGAFNGL-ASL--NTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYA 166 (452)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTT
T ss_pred CCCCEEECCC--------CccCCcChhhccCc-ccC--CEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhH
Confidence 4789999999 89987777888899 999 9999999999985 555689999999999998 666665 6
Q ss_pred CCCCCCCCEEEccCcccce--------ecCccccccCCCcCCC--------CccccceeccCCcCCCCCCCCCCCccccc
Q 038586 149 VPEYPTLFDVEGYMASLVQ--------ILEKDQHDEGSQNGQQ--------GAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g--------~lp~~~~L~l~~~~~l--------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
+.++++|++|++++|+..+ .++.+++|+++++... .. ++.|++++| .
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-L~~L~Ls~N----------------~ 229 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG-LEELEMSGN----------------H 229 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTT-CCEEECTTS----------------C
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccccccc-ccEEECcCC----------------c
Confidence 7889999999999855333 3456788888876433 34 788899999 8
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~L 288 (353)
+++..|..|.++++|++|++++|++++..| ..+. .+++|+.|++++ ..+|. .+..+++|+.|++
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFD--------GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECH----HHhc--------CCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 888889999999999999999999999888 7888 899999999999 55554 4678999999999
Q ss_pred cCCCC
Q 038586 289 SEVEI 293 (353)
Q Consensus 289 s~N~l 293 (353)
++|.+
T Consensus 298 ~~Np~ 302 (452)
T 3zyi_A 298 HHNPW 302 (452)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 99997
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=162.05 Aligned_cols=181 Identities=13% Similarity=0.005 Sum_probs=152.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|+|++ |.+++..+..|..+ ++| ++|+|++|++++. .+..|..+++|++|+|++ ...+|. .
T Consensus 88 ~~L~~L~Ls~--------n~i~~i~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 88 RHLEILQLSR--------NHIRTIEIGAFNGL-ANL--NTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp SSCCEEECCS--------SCCCEECGGGGTTC-SSC--CEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTT
T ss_pred CCCCEEECCC--------CcCCccChhhccCC-ccC--CEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHH
Confidence 4789999999 89987667788899 999 9999999999985 455799999999999998 566655 6
Q ss_pred CCCCCCCCEEEccCcccce--------ecCccccccCCCcCC--------CCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 149 VPEYPTLFDVEGYMASLVQ--------ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g--------~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
+.++++|++|++++|+..+ .++.+++|+++++.. +.. ++.|++++| .
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-L~~L~Ls~N----------------~ 218 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-LDELDLSGN----------------H 218 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSS-CCEEECTTS----------------C
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcc-cCEEECCCC----------------c
Confidence 7889999999999865333 345678888887643 334 788899999 8
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~L 288 (353)
+++..|..|.++++|++|++++|++++..+ ..+. .+++|+.|++++ ..+|. .+..+++|+.|+|
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIER----NAFD--------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECT----TSST--------TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred cCccChhhhccCccCCEEECCCCceeEECh----hhhc--------CCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 888889999999999999999999999888 7888 999999999999 55554 4678999999999
Q ss_pred cCCCC
Q 038586 289 SEVEI 293 (353)
Q Consensus 289 s~N~l 293 (353)
++|.+
T Consensus 287 ~~Np~ 291 (440)
T 3zyj_A 287 HHNPW 291 (440)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 99997
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=159.42 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+++ +| ++..+ ++| ++|++++|.+++ +| ++.+++|++|++++ ...+| ++
T Consensus 43 ~L~~L~Ls~--------n~l~~-~~-~l~~l-~~L--~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 43 TLTSLDCHN--------SSITD-MT-GIEKL-TGL--TKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp TCCEEECCS--------SCCCC-CT-TGGGC-TTC--SEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred CCCEEEccC--------CCccc-Ch-hhccc-CCC--CEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cC
Confidence 566667766 66654 34 46666 666 666666666666 34 56666666666666 33343 56
Q ss_pred CCCCCCEEEccCcccce
Q 038586 151 EYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g 167 (353)
++++|++|++++|++++
T Consensus 104 ~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TCTTCCEEECCSSCCSC
T ss_pred CCCcCCEEECCCCcCCe
Confidence 66666666666666653
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=168.10 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=147.5
Q ss_pred cccHHHHHhhc----cccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCccccee
Q 038586 95 TISSALLLCLN----CMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQI 168 (353)
Q Consensus 95 ~lp~~l~~L~~----~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~ 168 (353)
.+|..+..+ . +| ++|+|++|.+++. .|..|+.+++|++|+|++ ...+++ ++.+++|++|++++|.+++.
T Consensus 21 ~l~~~l~~l-~~~~~~L--~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 21 SLKQALASL-RQSAWNV--KELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp THHHHHHTT-STTGGGC--CEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE
T ss_pred hhHHHHHHh-cccCCCc--cEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC
Confidence 456666665 4 89 9999999999997 678899999999999999 333443 99999999999999999863
Q ss_pred --cCccccccCCCcCCC-------CccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 169 --LEKDQHDEGSQNGQQ-------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 169 --lp~~~~L~l~~~~~l-------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.|.+++|+++++... .. ++.+++++| .+++..|..++.+++|++|++++|.+++
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSCSRGQG-KKNIYLANN----------------KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEECCCSS-CEEEECCSS----------------CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CCCCCcCEEECcCCcCCCCCccccCC-CCEEECCCC----------------CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 345566666655332 22 455666666 7777778899999999999999999998
Q ss_pred cCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 240 ILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..| ..+. ..+++|+.|++++ ..+|. ...+++|+.|+|++|.+..+|+ .+..++.|+.|+...+
T Consensus 159 ~~~----~~l~-------~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 159 VNF----AELA-------ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEG----GGGG-------GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS
T ss_pred cCh----HHHh-------hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCC
Confidence 777 5553 1589999999999 33333 4458999999999999988888 7899999999987554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=151.00 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=138.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCCCCCcEEecc--C-CCCCC-
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSLSKLSLNTVD--H-QGEII- 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L~~L~~L~Ls--~-~~~lP- 146 (353)
..++.|++++ |++++..+..+..+ ++| ++|++++|. +++. .+..|.++++|++|+++ + ...+|
T Consensus 31 ~~l~~L~l~~--------n~l~~i~~~~~~~l-~~L--~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIE--------THLRTIPSHAFSNL-PNI--SRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEES--------CCCSEECTTTTTTC-TTC--CEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CcccEEEEeC--------CcceEECHHHccCC-CCC--cEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4688899999 88885555578888 999 999999997 8774 44578899999999997 3 55665
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC-cCCCCCCCCCCCccccceeeeCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN-QANDIPCSSNNNVQTVEFEGEMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N-~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~ 225 (353)
..+.++++|++|++++|.+++ +|.. +....+.. ++++++++| +++ +..+..|..++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~~-----~~l~~L~~-L~~L~l~~N~~l~----------------~i~~~~~~~l~ 155 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPDL-----TKVYSTDI-FFILEITDNPYMT----------------SIPVNAFQGLC 155 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCCC-----TTCCBCCS-EEEEEEESCTTCC----------------EECTTTTTTTB
T ss_pred HHhCCCCCCCEEeCCCCCCcc-cccc-----cccccccc-ccEEECCCCcchh----------------hcCcccccchh
Confidence 457889999999999999885 6642 22222222 348888888 443 33345688899
Q ss_pred CCC-EEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC----CCc-hhhcCC-CCCCEEEccCCCCCCCCc
Q 038586 226 DIF-DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ----NDP-IELLCL-DNILEIVESEVEIDSLPD 298 (353)
Q Consensus 226 ~L~-~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~----~iP-~~l~~l-~~L~~L~Ls~N~l~~iP~ 298 (353)
+|+ +|++++|+++. +| .... ..++|+.|++++. .+| ..+..+ ++|++|++++|++..+|+
T Consensus 156 ~L~~~L~l~~n~l~~-i~----~~~~--------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 156 NETLTLKLYNNGFTS-VQ----GYAF--------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp SSEEEEECCSCCCCE-EC----TTTT--------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred cceeEEEcCCCCCcc-cC----Hhhc--------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 999 99999999984 55 3322 2378999999883 344 457788 999999999999988888
Q ss_pred ccccccCcccchhc
Q 038586 299 RLVFDVREFLSELD 312 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld 312 (353)
. .++.|+.|+
T Consensus 223 --~--~~~~L~~L~ 232 (239)
T 2xwt_C 223 --K--GLEHLKELI 232 (239)
T ss_dssp --T--TCTTCSEEE
T ss_pred --h--HhccCceee
Confidence 2 344444444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=169.77 Aligned_cols=199 Identities=9% Similarity=0.083 Sum_probs=146.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHH-HhhccccccEEEeecCCCCCCCCC---cccCCCCCCcEEeccC--CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALL-LCLNCMIYDIWTLVTINFGGIPVP---EFVGSLSKLSLNTVDH--QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~-~L~~~L~~~~L~Ls~N~l~~~~~P---~~~~~L~~L~~L~Ls~--~~~l 145 (353)
++++.+++++ |.+. .+|..++ .+ ++| ++|++++|.+++. +| ..++.+++|++|++++ ...+
T Consensus 310 ~~L~~L~l~~--------n~l~-~ip~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 310 EKVKRITVEN--------SKVF-LVPCSFSQHL-KSL--EFLDLSENLMVEE-YLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp TTCCEEEEES--------SCCC-CCCHHHHHHC-TTC--CEEECCSSCCCHH-HHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred ccceEEEecc--------Cccc-cCCHHHHhcC-ccc--cEEEccCCccccc-cccchhhhhccccCcEEEccCCccccc
Confidence 3566777777 6665 6777664 57 788 8888888887775 53 2367778888888877 4444
Q ss_pred C---CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchh
Q 038586 146 I---HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLS 222 (353)
Q Consensus 146 P---~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~ 222 (353)
| ..++.+++|++|++++|+++ .+|.. +..+.. ++++++++|+++.++ ..+
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-------~~~~~~-L~~L~Ls~N~l~~l~-----------------~~~- 429 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDS-------CQWPEK-MRFLNLSSTGIRVVK-----------------TCI- 429 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCC-CCCSC-------CCCCTT-CCEEECTTSCCSCCC-----------------TTS-
T ss_pred ccchhhhhcCCCCCEEECCCCCCc-cCChh-------hccccc-ccEEECCCCCccccc-----------------chh-
Confidence 4 24677788888888888777 56655 555556 788888888444333 221
Q ss_pred ccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCc
Q 038586 223 EVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 223 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
.++|++|++++|++++.++ .+++|++|++++ ..+|. ...+++|++|++++|++ +..|.
T Consensus 430 -~~~L~~L~Ls~N~l~~~~~----------------~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFSL----------------FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp -CTTCSEEECCSSCCSCCCC----------------CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred -cCCceEEECCCCChhhhcc----------------cCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHH
Confidence 1479999999999987443 788999999999 67776 46789999999999999 55555
Q ss_pred ccccccCcccchhccccCCCccccccccccc-c
Q 038586 299 RLVFDVREFLSELDQIAEPRDEECGKLQAVA-W 330 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~ 330 (353)
.|+.++.|+.|+...++..+.|..+..+. |
T Consensus 492 --~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 492 --IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp --GGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred --HHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 68999999999999999988888665553 5
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=150.92 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=148.8
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .|..|.++++|++|++++ ...++. .
T Consensus 52 ~~L~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 119 (276)
T 2z62_A 52 PELQVLDLSR--------CEIQTIEDGAYQSL-SHL--STLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFP 119 (276)
T ss_dssp TTCSEEECTT--------CCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCC
T ss_pred cCCcEEECCC--------CcCCccCHHHccCC-cCC--CEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchh
Confidence 4799999999 89986666688899 999 9999999999996 667899999999999998 455544 6
Q ss_pred CCCCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
++++++|++|++++|.+++ .+|.. +..+.. ++++++++| ++++..+..+..+++|
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEY-------FSNLTN-LEHLDLSSN----------------KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGG-------GGGCTT-CCEEECCSS----------------CCCEECGGGGHHHHTC
T ss_pred cccCCCCCEEECcCCccceecCchh-------hccCCC-CCEEECCCC----------------CCCcCCHHHhhhhhhc
Confidence 8999999999999999986 46777 777777 999999999 7777667778777777
Q ss_pred C----EEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEEccCCCC-CCCCc
Q 038586 228 F----DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 228 ~----~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
+ +|++++|++++..+ ..+. ..+|+.|++++ ..+|.. +..+++|++|++++|++ ...|.
T Consensus 176 ~~l~l~L~ls~n~l~~~~~----~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQP----GAFK---------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TTCCEEEECCSSCCCEECT----TSSC---------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccceeeecCCCcccccCc----cccC---------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 7 89999999987666 4444 45899999998 566655 67899999999999999 55553
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=165.92 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=161.8
Q ss_pred cEEEEEcCCCCCccccccCCc--ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCC-C
Q 038586 73 HFKVLNLRSSNDENARRKILK--GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEI-I 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~--g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~l-P 146 (353)
.++.++++. |.+. +..+..+..+ ..| ++++++.|.+.. ++..+..+++|+.++++. .... +
T Consensus 372 ~L~~L~ls~--------n~l~~~~~~~~~~~~~-~~L--~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 372 SLEFLDLSR--------NGLSFKGCCSQSDFGT-ISL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp TCCEEECCS--------SCCBEEEECCHHHHSC-SCC--CEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccccchhhc--------cccccccccccchhhh-hhh--hhhhcccccccc--ccccccccccccchhhhhccccccccc
Confidence 345556655 5553 3455666667 777 788877777766 566677788888888876 2222 3
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l~ 225 (353)
..+..+++++.+++++|.+.+..|.. +..... ++.+++++| .+. +..|..+..++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~-------~~~~~~-L~~L~Ls~N----------------~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGN----------------SFQENFLPDIFTELR 494 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTCT
T ss_pred cccccccccccccccccccccccccc-------cccchh-hhhhhhhhc----------------ccccccCchhhhhcc
Confidence 44677888888888888888776666 666666 788888888 543 45788899999
Q ss_pred CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCccc
Q 038586 226 DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRL 300 (353)
Q Consensus 226 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~ 300 (353)
+|++|+|++|++++..| ..++ ++++|++|+|++ +..|..+..+++|++|+|++|+| +..|.
T Consensus 495 ~L~~L~Ls~N~L~~l~~----~~f~--------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 560 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-- 560 (635)
T ss_dssp TCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS--
T ss_pred ccCEEECCCCccCCcCh----HHHc--------CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH--
Confidence 99999999999999989 8888 999999999998 33456789999999999999999 55666
Q ss_pred ccccC-cccchhccccCCCccccccccccccc
Q 038586 301 VFDVR-EFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 301 ~~~~l-~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
.+..+ +.|+.|+...++..++|...+...|-
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 78777 68999999999999999977777774
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=168.21 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=143.1
Q ss_pred cccce-EecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEec
Q 038586 61 KWRGV-CCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTV 139 (353)
Q Consensus 61 ~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~L 139 (353)
.|.|+ .|.. ++++.|++++ |++++ +|..+ + ++| ++|+|++|.|+. +| ..+++|++|++
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~--------n~L~~-lp~~l--~-~~L--~~L~Ls~N~l~~--ip---~~l~~L~~L~L 107 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNR--------LNLSS-LPDNL--P-PQI--TVLEITQNALIS--LP---ELPASLEYLDA 107 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCS--------SCCSC-CCSCC--C-TTC--SEEECCSSCCSC--CC---CCCTTCCEEEC
T ss_pred hhhhcccccc--CCccEEEeCC--------CCCCc-cCHhH--c-CCC--CEEECcCCCCcc--cc---cccCCCCEEEc
Confidence 69999 7853 4799999999 89986 88755 4 789 999999999996 78 55899999999
Q ss_pred cC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccc-----c
Q 038586 140 DH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV-----E 212 (353)
Q Consensus 140 s~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~ 212 (353)
++ ...+|. +++ +|++|++++|++++ +|. .+.. ++.|++++|+++.+|. ....++.+ .
T Consensus 108 s~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~----------~l~~-L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 108 CDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE----------LPAL-LEYINADNNQLTMLPE-LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC----------CCTT-CCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred cCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC----------cCcc-ccEEeCCCCccCcCCC-cCCCcCEEECCCCC
Confidence 99 566888 765 99999999999986 554 1233 5666666666665554 22233222 4
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEcc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVES 289 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls 289 (353)
+++ +|. +. ++|++|+|++|+|+ .+| . +.. .-......|+.|++++ ..+|..+..+++|+.|+|+
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp----~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLE-SLP----A-VPV---RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCS-SCC----C-CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCC-chh----h-HHH---hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 444 666 55 88999999999998 577 4 550 0000122239999998 7899999889999999999
Q ss_pred CCCC-CCCCcccccccCc
Q 038586 290 EVEI-DSLPDRLVFDVRE 306 (353)
Q Consensus 290 ~N~l-~~iP~~~~~~~l~ 306 (353)
+|++ +.+|. .+..++
T Consensus 239 ~N~l~~~~p~--~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRE--SLSQQT 254 (571)
T ss_dssp SSSCCHHHHH--HHHHHH
T ss_pred CCcCCCcCHH--HHHHhh
Confidence 9999 77887 565544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=152.11 Aligned_cols=182 Identities=11% Similarity=0.116 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+. .+| .+..+ ++| ++|++++|.+++ +|. +..+++|++|++++ ...+| .++
T Consensus 42 ~L~~L~l~~--------~~i~-~l~-~~~~l-~~L--~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~ 104 (308)
T 1h6u_A 42 GITTLSAFG--------TGVT-TIE-GVQYL-NNL--IGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIA 104 (308)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGT
T ss_pred CcCEEEeeC--------CCcc-Cch-hhhcc-CCC--CEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhc
Confidence 577777777 6665 354 46667 777 888888887777 454 77777888888777 44444 577
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-CCCCCcccc-----ceeeeCCcchhcc
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-SSNNNVQTV-----EFEGEMEHSLSEV 224 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~-----~l~g~~p~~l~~l 224 (353)
++++|++|++++|++++ ++. +..+.. ++++++++|+++.++. .....++.+ ++++ ++. +..+
T Consensus 105 ~l~~L~~L~l~~n~l~~-~~~--------l~~l~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l 172 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD-VTP--------LAGLSN-LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-LANL 172 (308)
T ss_dssp TCTTCCEEECTTSCCCC-CGG--------GTTCTT-CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred CCCCCCEEECCCCCCCC-chh--------hcCCCC-CCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-hcCC
Confidence 77778888887777764 221 233344 5556666663333221 011111111 3332 222 5566
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++|++|++++|++++. + . +. .+++|++|++++ ..+| .+..+++|+.|++++|++...|.
T Consensus 173 ~~L~~L~l~~n~l~~~-~----~-l~--------~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 173 SKLTTLKADDNKISDI-S----P-LA--------SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCCEEECCSSCCCCC-G----G-GG--------GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCEEECCCCccCcC-h----h-hc--------CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 6666666666666542 2 1 34 566666666666 3333 25566666666666666644444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=149.72 Aligned_cols=195 Identities=7% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C---CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q---GEII 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~---~~lP 146 (353)
.+++.|++++ |.++ .+|..+ . ++| ++|++++|.+++. .+..+.++++|++|++++ . +..|
T Consensus 100 ~~L~~L~Ls~--------n~l~-~l~~~~--~-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 100 VKLERLYLSK--------NQLK-ELPEKM--P-KTL--QELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp TTCCEEECCS--------SCCS-BCCSSC--C-TTC--CEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCCCEEECCC--------CcCC-ccChhh--c-ccc--cEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcCh
Confidence 3677888888 5554 444432 1 455 6666666666553 333455566666666655 1 1334
Q ss_pred CCCCCCCCCCEEEccCcccceecCc-----cccccCCC----------cCCCCccccceeccCCcCCCCCCCCCCCcccc
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEK-----DQHDEGSQ----------NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV 211 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~-----~~~L~l~~----------~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~ 211 (353)
..+.++++|++|++++|.++. +|. +++|++++ +..+.. ++.+++++|
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n---------------- 226 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFN---------------- 226 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTT-CCEEECCSS----------------
T ss_pred hhccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCC----------------
Confidence 445555566666666555542 221 22222222 333334 556666666
Q ss_pred ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hc------CCC
Q 038586 212 EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LL------CLD 281 (353)
Q Consensus 212 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~------~l~ 281 (353)
.+++..+..+..+++|++|++++|+++ .+| ..+. .+++|+.|++++ ..+|.. +. ...
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp----~~l~--------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVP----GGLA--------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCC----TTTT--------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCC----hhhc--------cCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 777777778999999999999999998 577 6788 899999999998 555543 32 247
Q ss_pred CCCEEEccCCCCC--CCCcccccccCcccchhcc
Q 038586 282 NILEIVESEVEID--SLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 282 ~L~~L~Ls~N~l~--~iP~~~~~~~l~~L~~Ld~ 313 (353)
.++.+++++|.+. .+++. .|..+..++.++.
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L 326 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQL 326 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC
T ss_pred cccceEeecCcccccccCcc-ccccccceeEEEe
Confidence 8999999999993 34431 7888888887764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=164.68 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=152.8
Q ss_pred CcEEEEEcCCCCCccccccCCcccc--cHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTI--SSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEII 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~l--p~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP 146 (353)
.+++.|++++ |.+++.. |..+..+ ++| ++|++++|.+.+ +|..+..+++|++|++++ .+..|
T Consensus 347 ~~L~~L~l~~--------n~l~~~~~~~~~~~~~-~~L--~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 347 PSLEFLDLSR--------NGLSFKGCCSQSDFGT-TSL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp TTCCEEECCS--------SCCBEEEEEEHHHHTC-SCC--CEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred CCCCEEeCcC--------CccCcccccccccccc-Ccc--CEEECCCCcccc--ccccccccCCCCEEEccCCccccccc
Confidence 3677788888 7877543 7888899 999 999999999988 566699999999999998 33334
Q ss_pred -CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhcc
Q 038586 147 -HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEV 224 (353)
Q Consensus 147 -~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l 224 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++| .++ +.+|..+..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~p~~~~~l 469 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGN----------------SFQENFLPDIFTEL 469 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhh-------hhcCCc-CcEEECcCC----------------cCccccchhhhhcc
Confidence 46889999999999999999888877 777777 999999999 776 6789999999
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
++|++|++++|++++..| ..++ .+++|+.|++++ +..|..+..+++|++|++++|++ +..|.
T Consensus 470 ~~L~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEECCCCccccCCh----hhhh--------cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999888 8888 999999999998 33445688999999999999999 77776
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=145.15 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=117.8
Q ss_pred CCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC
Q 038586 50 WGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 50 W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
|.+.. .|.|.+|.|+. +.+. .+|..+ . ++| ++|+|++|.+++. .|..|.
T Consensus 13 ~~~~~----~Cs~~~v~c~~--------------------~~l~-~ip~~~--~-~~L--~~L~Ls~n~i~~~-~~~~~~ 61 (229)
T 3e6j_A 13 CPSQC----SCSGTTVDCRS--------------------KRHA-SVPAGI--P-TNA--QILYLHDNQITKL-EPGVFD 61 (229)
T ss_dssp CCTTC----EEETTEEECTT--------------------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTT
T ss_pred CCCCC----EEeCCEeEccC--------------------CCcC-ccCCCC--C-CCC--CEEEcCCCccCcc-CHHHhh
Confidence 45666 89999999964 3443 566532 2 678 9999999999997 788899
Q ss_pred CCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 130 SLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
.+++|++|+|++ .+.+|.. +..+++|++|+|++|++++..+.. +..+.. +++|++++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-------~~~l~~-L~~L~Ls~N----------- 122 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-------FDRLVH-LKELFMCCN----------- 122 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS-----------
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH-------hCcchh-hCeEeccCC-----------
Confidence 999999999998 7777754 688999999999999988555554 555666 788888888
Q ss_pred CccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEE
Q 038586 207 NVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEI 286 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L 286 (353)
+++ .+|..+..+++|++|++++|++++..+ . .+..+++|+.|
T Consensus 123 -----~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~----~----------------------------~~~~l~~L~~L 164 (229)
T 3e6j_A 123 -----KLT-ELPRGIERLTHLTHLALDQNQLKSIPH----G----------------------------AFDRLSSLTHA 164 (229)
T ss_dssp -----CCC-SCCTTGGGCTTCSEEECCSSCCCCCCT----T----------------------------TTTTCTTCCEE
T ss_pred -----ccc-ccCcccccCCCCCEEECCCCcCCccCH----H----------------------------HHhCCCCCCEE
Confidence 555 566777788888888888888775443 2 24456678888
Q ss_pred EccCCCC
Q 038586 287 VESEVEI 293 (353)
Q Consensus 287 ~Ls~N~l 293 (353)
++++|.+
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 8888887
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=155.86 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +|+ +..+ ++| ++|++++|.+++ +|+ ++++++|++|++++ ...+|+ +
T Consensus 68 ~~L~~L~Ls~--------n~l~~-~~~-~~~l-~~L--~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 68 NNLTQINFSN--------NQLTD-ITP-LKNL-TKL--VDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp TTCCEEECCS--------SCCCC-CGG-GTTC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred cCCCEEECCC--------CccCC-chh-hhcc-ccC--CEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCChH-H
Confidence 4788899988 77774 444 7777 888 888888888887 444 78888888888887 555554 7
Q ss_pred CCCCCCCEEEccCcccce
Q 038586 150 PEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g 167 (353)
+++++|++|++++|.+.+
T Consensus 131 ~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISD 148 (466)
T ss_dssp TTCTTCSEEEEEEEEECC
T ss_pred cCCCCCCEEECCCCccCC
Confidence 778888888888877653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=148.09 Aligned_cols=209 Identities=10% Similarity=0.035 Sum_probs=145.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.++ .+++ +..+ ++| ++|++++|.++. +| .+..+++|++|++++ ...+|. +
T Consensus 66 ~~L~~L~l~~--------n~i~-~~~~-~~~l-~~L--~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~-~ 128 (347)
T 4fmz_A 66 TNLEYLNLNG--------NQIT-DISP-LSNL-VKL--TNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP-L 128 (347)
T ss_dssp TTCCEEECCS--------SCCC-CCGG-GTTC-TTC--CEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG-G
T ss_pred CCccEEEccC--------Cccc-cchh-hhcC-CcC--CEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh-h
Confidence 4678888888 7776 4554 7777 888 888888888876 44 578888888888887 555655 7
Q ss_pred CCCCCCCEEEccCcccce------ecCccccccCCCcCC--------CCccccceeccCCcCCCCCC-CCCCCcccccee
Q 038586 150 PEYPTLFDVEGYMASLVQ------ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIPC-SSNNNVQTVEFE 214 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g------~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~~l~ 214 (353)
..+++|++|++++|.... .++.+++|+++++.. +.. ++.+++++|++.+++. .....++.+.+.
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD-LYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT-CSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCC-CCEEEccCCcccccccccCCCccceeecc
Confidence 788888888888885433 344566677666532 233 6778888887776653 223333333332
Q ss_pred ee----CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEE
Q 038586 215 GE----MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIV 287 (353)
Q Consensus 215 g~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~ 287 (353)
+. ++. +..+++|++|++++|++++ ++ . +. .+++|+.|++++ ..+ +.+..+++|++|+
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~----~-~~--------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNKITD-LS----P-LA--------NLSQLTWLEIGTNQISDI-NAVKDLTKLKMLN 271 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG----G-GT--------TCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCccCC-Cc----c-hh--------cCCCCCEEECCCCccCCC-hhHhcCCCcCEEE
Confidence 21 122 6778888888888888865 33 2 55 788889998888 444 4577888999999
Q ss_pred ccCCCCCCCCcccccccCcccchhccccCC
Q 038586 288 ESEVEIDSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 288 Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
+++|++..+|. +..++.|+.|+...+.
T Consensus 272 l~~n~l~~~~~---~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 272 VGSNQISDISV---LNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCSSCCCCCGG---GGGCTTCSEEECCSSC
T ss_pred ccCCccCCChh---hcCCCCCCEEECcCCc
Confidence 99998866644 7778888888765543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-18 Score=160.77 Aligned_cols=193 Identities=11% Similarity=0.020 Sum_probs=153.0
Q ss_pred ceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--
Q 038586 64 GVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-- 141 (353)
Q Consensus 64 gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-- 141 (353)
...|... .+ .+.++ ++++ .+|..+ . ++| ++|++++|.+++. .+..+.++++|++|++++
T Consensus 27 ~~~C~~~--~~--c~~~~--------~~l~-~iP~~~--~-~~L--~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 27 SLSCDRN--GI--CKGSS--------GSLN-SIPSGL--T-EAV--KSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp CCEECTT--SE--EECCS--------TTCS-SCCTTC--C-TTC--CEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCC--eE--eeCCC--------CCcc-cccccc--c-ccC--cEEECCCCcCccc-CHHHhccCCCCCEEECCCCc
Confidence 5667532 23 78888 8887 788754 2 688 9999999999985 445899999999999998
Q ss_pred CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-C---CCCCccccceee-
Q 038586 142 QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-S---SNNNVQTVEFEG- 215 (353)
Q Consensus 142 ~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~---~~~~l~~~~l~g- 215 (353)
...+ |..++++++|++|++++|++++..+.. +..+.. ++++++++|+++.++. . ....++.+.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW-------FKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH-------HTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH-------hCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 4444 567999999999999999998544443 455666 8999999999998876 2 345566555543
Q ss_pred -----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhh-cCCCCCCEE
Q 038586 216 -----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIEL-LCLDNILEI 286 (353)
Q Consensus 216 -----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l-~~l~~L~~L 286 (353)
..|..++++++|++|++++|++++..| ..++ .+++|++|++++ +.+|..+ ..+++|++|
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEP----KSLK--------SIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECT----TTTT--------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred ccccccCHHHccCCCCCCEEECCCCCcCccCH----HHHh--------ccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 346778999999999999999999888 8888 899999999998 5566654 458999999
Q ss_pred EccCCCCCC
Q 038586 287 VESEVEIDS 295 (353)
Q Consensus 287 ~Ls~N~l~~ 295 (353)
++++|.+..
T Consensus 228 ~L~~n~l~~ 236 (353)
T 2z80_A 228 ELRDTDLDT 236 (353)
T ss_dssp EEESCBCTT
T ss_pred ECCCCcccc
Confidence 999999944
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-16 Score=152.96 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=132.4
Q ss_pred CcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce--
Q 038586 92 LKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-- 167 (353)
Q Consensus 92 l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-- 167 (353)
..+..+.++.++ ++| ++|++++|.+++ +| .++.+++|++|++++ ...+| ++.+++|++|++++|.+++
T Consensus 30 ~~~~~~~~~~~l-~~L--~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 30 MQATDTISEEQL-ATL--TSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp CCTTSEEEHHHH-TTC--CEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cCcccccChhHc-CCC--CEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 344555678899 999 999999999998 66 689999999999999 55565 8999999999999999885
Q ss_pred --ecCccccccCCCcCC-------CCccccceeccCCcCCCCCCCCCCCcccccee-----eeCCcchhccCCCCEEEcc
Q 038586 168 --ILEKDQHDEGSQNGQ-------QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-----GEMEHSLSEVYDIFDVERY 233 (353)
Q Consensus 168 --~lp~~~~L~l~~~~~-------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-----g~~p~~l~~l~~L~~L~Ls 233 (353)
.++.+++|+++++.. +.. ++++++++|+++.++......++.+.+. +.+ .++.+++|++|+++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~-L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLDVSQNPL-LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTT-CCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCCCcCCEEECCCCcCCeecCCCCCc-CCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 456778888887743 344 7889999999988876665555555433 233 36677888888888
Q ss_pred cCcCcccCCCCCccccch-----hhh--hcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCC
Q 038586 234 SSSLDQILESERTEDHGD-----AAI--QNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLP 297 (353)
Q Consensus 234 ~N~l~g~~p~~~~~~~~~-----~~~--~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP 297 (353)
+|++++ +|-.....+.. ..+ .....+++|+.|++++ ..+| +..+++|+.|++++|++..+|
T Consensus 179 ~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 888776 33000000000 000 0112556666666666 3455 566677777777777774444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=155.04 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=111.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
|.+++ +| ++..+ ++| ++|++++|.+++ +|... ++|++|++++ ...+| .++.+++|++|++++|++++
T Consensus 183 n~l~~-l~-~~~~l-~~L--~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 183 NQLEE-LP-ELQNL-PFL--TAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCCSS-CC-CCTTC-TTC--CEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCc-Cc-cccCC-CCC--CEEECCCCcCCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 45543 44 35555 555 666666665555 34322 3566666666 44566 37777777778877777764
Q ss_pred ---ecCccccccCCCcCCCC-----ccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhcc-CCCCEEEcccCcCc
Q 038586 168 ---ILEKDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEV-YDIFDVERYSSSLD 238 (353)
Q Consensus 168 ---~lp~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l-~~L~~L~Ls~N~l~ 238 (353)
..+.+++|+++++...+ ..++.+++++|+++.++... ..++.+.+.+.-...+..+ ++|++|++++|+++
T Consensus 252 l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~-~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC-TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC-CcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence 22345666666654332 12566677777666543211 2333333332222223333 47888888888887
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-C--CCCcccccccC
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-D--SLPDRLVFDVR 305 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~--~iP~~~~~~~l 305 (353)
+ +| . .+++|+.|++++ ..+|. .+++|++|++++|++ + .+|. .++.+
T Consensus 331 ~-lp----~-----------~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~--~l~~L 382 (454)
T 1jl5_A 331 E-LP----A-----------LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPE--SVEDL 382 (454)
T ss_dssp C-CC----C-----------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCT--TCCEE
T ss_pred c-cc----c-----------cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChH--HHHhh
Confidence 6 55 2 357899999988 66776 478999999999999 5 6777 67666
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=148.44 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=153.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +| ++..+ ++| ++|++++|.+++ +|. +..+++|++|++++ ....++.+
T Consensus 88 ~~L~~L~L~~--------n~i~~-~~-~~~~l-~~L--~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 88 VKLTNLYIGT--------NKITD-IS-ALQNL-TNL--RELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp TTCCEEECCS--------SCCCC-CG-GGTTC-TTC--SEEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred CcCCEEEccC--------CcccC-ch-HHcCC-CcC--CEEECcCCcccC--chh-hccCCceeEEECCCCCCcccccch
Confidence 4789999999 88874 54 58888 999 999999999988 555 88999999999998 23334448
Q ss_pred CCCCCCCEEEccCcccce-----ecCccccccCCCcCC--------CCccccceeccCCcCCCCC-CCCCCCccccceee
Q 038586 150 PEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIP-CSSNNNVQTVEFEG 215 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~-~~~~~~l~~~~l~g 215 (353)
..+++|++|++++|.+.+ .++.+++|+++++.. +.. ++.+++++|++.+++ ......++.+.+.+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTT-CCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCc-cceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 889999999999988764 456778888877643 233 577888888887765 33334444444433
Q ss_pred ----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEc
Q 038586 216 ----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 216 ----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~L 288 (353)
.++. +..+++|++|++++|++++ ++ .+. .+++|+.|++++ ..+ +.+..+++|++|++
T Consensus 231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-----~~~--------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 231 NKITDLSP-LANLSQLTWLEIGTNQISD-IN-----AVK--------DLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFL 294 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-----GGT--------TCTTCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred CccCCCcc-hhcCCCCCEEECCCCccCC-Ch-----hHh--------cCCCcCEEEccCCccCCC-hhhcCCCCCCEEEC
Confidence 2333 7788889999999888875 23 455 788888888888 444 35777888888888
Q ss_pred cCCCC-CCCCcccccccCcccchhccccCC
Q 038586 289 SEVEI-DSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 289 s~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
++|++ +..|. .++.++.|+.|+...+.
T Consensus 295 ~~n~l~~~~~~--~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 295 NNNQLGNEDME--VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSCCCGGGHH--HHHTCTTCSEEECCSSS
T ss_pred cCCcCCCcChh--HhhccccCCEEEccCCc
Confidence 88888 44555 67778888888765543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=165.29 Aligned_cols=173 Identities=13% Similarity=0.032 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l 149 (353)
.++.|||++ |.+++..+.+|.++ ++| ++|||++|.|++. .|..|.++++|++|+|++ ...+|+ .|
T Consensus 53 ~~~~LdLs~--------N~i~~l~~~~f~~l-~~L--~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 53 STKNLDLSF--------NPLRHLGSYSFFSF-PEL--QVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp TCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCEEEeeC--------CCCCCCCHHHHhCC-CCC--CEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 567777777 77764444567777 777 7777777777774 445577777777777777 555554 36
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCCC
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDIF 228 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L~ 228 (353)
.++++|++|++++|++++..+.. ++.+.. +++|++++| .+++ .+|..++.+++|+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~-------~~~L~~-L~~L~Ls~N----------------~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFP-------IGHLKT-LKELNVAHN----------------LIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCCCChhh-------hhcCcc-cCeeccccC----------------ccccCCCchhhccchhhh
Confidence 77777777777777776544444 555666 777777777 4433 3566677777777
Q ss_pred EEEcccCcCcccCCCCCccccchhhhhcccCCCcc----ceeecCC---CCCchhhcCCCCCCEEEccCCCC
Q 038586 229 DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVE----EEALLAQ---QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 229 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L----~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
+|++++|++++..| ..+. .+..+ ..++++. ..++........+..+++++|..
T Consensus 177 ~L~L~~N~l~~~~~----~~l~--------~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 177 HLDLSSNKIQSIYC----TDLR--------VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp EEECCSSCCCEECG----GGGH--------HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred hhcccCcccccccc----cccc--------chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 77777777776666 4444 33322 2344444 33344444444556666666655
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=157.95 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
++|++|++++|++++ +| . .+++|+.|++++ ..+|. .+++|+.|+|++|+|..+|+ .
T Consensus 221 ~~L~~L~Ls~N~L~~-lp-------~--------~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~--~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP-------V--------LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPE--S 279 (622)
T ss_dssp TTCCEEECCSSCCSC-CC-------C--------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCG--G
T ss_pred CCCCEEEccCCccCc-CC-------C--------CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCH--H
Confidence 456666666666654 33 1 556788888888 55665 56788889999998888888 7
Q ss_pred cccCcccchhccccCC
Q 038586 302 FDVREFLSELDQIAEP 317 (353)
Q Consensus 302 ~~~l~~L~~Ld~~~~~ 317 (353)
+..+++|+.|+...++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 8888888888765543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=151.68 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=125.6
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCc-cc
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPE-FV 128 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~ 128 (353)
|.|..|.|+.. ..+++.|+|++ |+++ .+|+ +|.++ ++| ++|+|++|.+.+. +|. .|
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~--------N~i~-~i~~~~f~~l-~~L--~~L~Ls~N~i~~~-i~~~~f 75 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLR-VIQKGAFSGF-GDL--EKIEISQNDVLEV-IEADVF 75 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEES--------CCCS-EECTTSSTTC-TTC--CEEEEECCTTCCE-ECTTSB
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccC--------CcCC-CcCHHHHcCC-CCC--CEEECcCCCCCCc-cChhHh
Confidence 67888888631 13566677777 6666 4553 46666 777 7777777776554 443 45
Q ss_pred CCCCCCcEEec-cC--CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccC-CcCCCCCCC
Q 038586 129 GSLSKLSLNTV-DH--QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQH-NQANDIPCS 203 (353)
Q Consensus 129 ~~L~~L~~L~L-s~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~-N~l~~i~~~ 203 (353)
.++++++++.. +. ...+ |..+..+++|++|++++|++.+..+.. +..... +..+++.+ |
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-------~~~~~~-l~~l~l~~~~-------- 139 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-------KIHSLQ-KVLLDIQDNI-------- 139 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT-------TCCBSS-CEEEEEESCT--------
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh-------hcccch-hhhhhhcccc--------
Confidence 66666655333 32 4444 344566777777777777766332222 111122 33444433 3
Q ss_pred CCCCccccceeeeCCcchhccC-CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchh-h
Q 038586 204 SNNNVQTVEFEGEMEHSLSEVY-DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIE-L 277 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~-l 277 (353)
++....+..|..+. .++.|++++|+|+...+ ... ...+|+++++.+ +.+|.. +
T Consensus 140 --------~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f--------~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 140 --------NIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAF--------NGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp --------TCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSS--------TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred --------ccccccccchhhcchhhhhhccccccccCCCh-----hhc--------cccchhHHhhccCCcccCCCHHHh
Confidence 33333344555553 58889999999876443 333 456788888875 777764 6
Q ss_pred cCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 278 LCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
..+++|++|++++|+|..+|+. .|..++.|+.++.
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSY-GLENLKKLRARST 233 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTTC
T ss_pred ccCcccchhhcCCCCcCccChh-hhccchHhhhccC
Confidence 7889999999999999888873 4677776666553
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=138.19 Aligned_cols=150 Identities=7% Similarity=-0.006 Sum_probs=117.7
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
..+ ++| ++|++++|.++. +| .+..+++|++|++++ ....++.+..+++|++|++++|.+++..|..
T Consensus 41 ~~l-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------- 107 (197)
T 4ezg_A 41 AQM-NSL--TYITLANINVTD--LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN------- 107 (197)
T ss_dssp HHH-HTC--CEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-------
T ss_pred hhc-CCc--cEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-------
Confidence 566 888 999999999886 67 688889999999988 4444457888999999999999988766666
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ 259 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 259 (353)
+..+.. ++++++++| .+++..|..++.+++|++|++++|++.+.+| .++ .
T Consensus 108 l~~l~~-L~~L~Ls~n----------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~--------~ 157 (197)
T 4ezg_A 108 LSGLTS-LTLLDISHS----------------AHDDSILTKINTLPKVNSIDLSYNGAITDIM-----PLK--------T 157 (197)
T ss_dssp CTTCTT-CCEEECCSS----------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----GGG--------G
T ss_pred hcCCCC-CCEEEecCC----------------ccCcHhHHHHhhCCCCCEEEccCCCCccccH-----hhc--------C
Confidence 666777 888999999 7777778888899999999999998333344 356 7
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCC
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
+++|+.|++++ ..++ .+..+++|++|++++|+++
T Consensus 158 l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 88889998888 4455 6788899999999999884
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=163.01 Aligned_cols=204 Identities=11% Similarity=0.076 Sum_probs=119.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCC-------------cEEe
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL-------------SLNT 138 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L-------------~~L~ 138 (353)
.+++++++++ |.+ |.+|++++++ ++| ++|++++|.+.|. +|..++++++| ++|+
T Consensus 11 ~~L~~L~l~~--------n~l-~~iP~~i~~L-~~L--~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 11 TFLQEPLRHS--------SNL-TEMPVEAENV-KSK--TEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp ---------------------------------CCH--HHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred ccchhhhccc--------Cch-hhCChhHhcc-cch--hhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEE
Confidence 4789999999 899 8999999999 999 9999999999988 99999998875 9999
Q ss_pred ccC--CCCCCCCCCCCCCCCEEEccCcccceecC----ccccccCCCcCCCC-----ccccceeccCCcCCCCCC-CCCC
Q 038586 139 VDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE----KDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPC-SSNN 206 (353)
Q Consensus 139 Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp----~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~-~~~~ 206 (353)
+++ ...+|.. .++|++|++++|.+++ +| .+++|+++++...+ ..++++++++|+++.+|. ....
T Consensus 78 l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~ 153 (454)
T 1jl5_A 78 LNNLGLSSLPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS 153 (454)
T ss_dssp CTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred ecCCccccCCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCC
Confidence 999 5566663 3789999999999986 54 45666666654332 126677777776555542 1112
Q ss_pred Cccccceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcC
Q 038586 207 NVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLC 279 (353)
Q Consensus 207 ~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~ 279 (353)
.++.+.+.+ .+|.. ..+|++|++++|++++ +| .++ ++++|+.|++++ ..+|..
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-----~~~--------~l~~L~~L~l~~N~l~~l~~~--- 213 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-----ELQ--------NLPFLTAIYADNNSLKKLPDL--- 213 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-----CCT--------TCTTCCEEECCSSCCSSCCCC---
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-----ccc--------CCCCCCEEECCCCcCCcCCCC---
Confidence 222222221 12322 1355666666665554 33 245 677788888877 334432
Q ss_pred CCCCCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 280 LDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
.++|++|++++|.+..+|+ ++.++.|+.|+...
T Consensus 214 ~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPE---LQNLPFLTTIYADN 246 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCS
T ss_pred cCcccEEECcCCcCCcccc---cCCCCCCCEEECCC
Confidence 2478888888888877775 67777788777543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=152.33 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC--
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-- 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-- 147 (353)
.+++.|++++ |.+++. ++ +.++ ++| ++|++++|.+++ +|. +.++++|++|++++ ...+|.
T Consensus 90 ~~L~~L~l~~--------n~l~~~-~~-~~~l-~~L--~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 153 (466)
T 1o6v_A 90 TKLVDILMNN--------NQIADI-TP-LANL-TNL--TGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISALS 153 (466)
T ss_dssp TTCCEEECCS--------SCCCCC-GG-GTTC-TTC--CEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGGGT
T ss_pred ccCCEEECCC--------CccccC-hh-hcCC-CCC--CEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChhhc
Confidence 4678888888 676643 33 6677 777 777777777776 343 66677777777766 222221
Q ss_pred ------------------CCCCCCCCCEEEccCcccce-----ecCccccccCCCcCC--------CCccccceeccCCc
Q 038586 148 ------------------SVPEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQ 196 (353)
Q Consensus 148 ------------------~l~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~ 196 (353)
.++++++|++|++++|.+.+ .++.+++|+++++.. +.. ++.+++++|+
T Consensus 154 ~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~l~~n~ 232 (466)
T 1o6v_A 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQ 232 (466)
T ss_dssp TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT-CCEEECCSSC
T ss_pred cCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCC-CCEEECCCCC
Confidence 25566777777777776553 344556666655432 222 4566666666
Q ss_pred CCCCCC-CCCCCccccc-----eeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 197 ANDIPC-SSNNNVQTVE-----FEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 197 l~~i~~-~~~~~l~~~~-----l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
+++++. .....++.+. +++..| +..+++|++|++++|++++
T Consensus 233 l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred cccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 655432 1112222222 222111 4555555555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.1e-16 Score=146.51 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=126.1
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC--CCCCC-CCCCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH--QGEII-HSVPE 151 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~--~~~lP-~~l~~ 151 (353)
.+++++ ++++ .+|..+ . ..+ ++|+|++|++++. .+..+. ++++|++|+|++ ...+| ..|.+
T Consensus 22 ~l~c~~--------~~l~-~iP~~~--~-~~l--~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 22 ILSCSK--------QQLP-NVPQSL--P-SYT--ALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp EEECCS--------SCCS-SCCSSC--C-TTC--SEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEEeCC--------CCcC-ccCccC--C-CCC--CEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 588998 8887 578644 2 567 9999999999996 555576 899999999998 55555 46888
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
+++|++|+|++|++++..+.. +..+.. ++.|++++| ++++..|..|..+++|++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFL-------FSDLQA-LEVLLLYNN----------------HIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT-------TTTCTT-CCEEECCSS----------------CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHHH-------hCCCcC-CCEEECCCC----------------cccEECHHHhCCcccCCEEE
Confidence 999999999999988655555 566666 788888888 66666677788888888888
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcc--cc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREF--LS 309 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~--L~ 309 (353)
|++|+|++..+ ..+. .+..+++|+.|+|++|+|..+|.. .+..++. ++
T Consensus 143 L~~N~l~~l~~----~~~~-------------------------~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~~~l~ 192 (361)
T 2xot_A 143 LSQNQISRFPV----ELIK-------------------------DGNKLPKLMLLDLSSNKLKKLPLT-DLQKLPAWVKN 192 (361)
T ss_dssp CCSSCCCSCCG----GGTC-----------------------------CTTCCEEECCSSCCCCCCHH-HHHHSCHHHHT
T ss_pred CCCCcCCeeCH----HHhc-------------------------CcccCCcCCEEECCCCCCCccCHH-HhhhccHhhcc
Confidence 88888875332 2221 013456667777777777656531 4555554 35
Q ss_pred hhccccCCCcccccc
Q 038586 310 ELDQIAEPRDEECGK 324 (353)
Q Consensus 310 ~Ld~~~~~~~~~c~~ 324 (353)
.|+...++..++|..
T Consensus 193 ~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 193 GLYLHNNPLECDCKL 207 (361)
T ss_dssp TEECCSSCEECCHHH
T ss_pred eEEecCCCccCCcCc
Confidence 566666666666653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=147.43 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=146.6
Q ss_pred cEEEEEcCCCCCccccccCCccc-ccH--HHHHhhccccccEEEeecCCCCCCCCCccc--CCCCCCcEEeccC---CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGT-ISS--ALLLCLNCMIYDIWTLVTINFGGIPVPEFV--GSLSKLSLNTVDH---QGE 144 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~-lp~--~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~--~~L~~L~~L~Ls~---~~~ 144 (353)
+++.+.+.+ ..+... +.. .+..+ ++| ++|++++|.+.+. .|..+ ..+++|++|+|++ .+.
T Consensus 65 ~l~~l~l~~--------~~~~~~~~~~~~~~~~~-~~L--~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 65 RVRRLTVGA--------AQVPAQLLVGALRVLAY-SRL--KELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp CCCEEEECS--------CCCBHHHHHHHHHHHHH-SCC--CEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred ceeEEEEeC--------CcCCHHHHHHHHHhccc-Cce--eEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccch
Confidence 467777777 555422 111 23345 679 9999999999998 88887 8999999999999 333
Q ss_pred CC----CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeee--C-
Q 038586 145 II----HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE--M- 217 (353)
Q Consensus 145 lP----~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~--~- 217 (353)
.| ..+..+++|++|++++|.+.+..|.. +..+.. ++++++++| ++.+. +
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~ 188 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-------VRAFPA-LTSLDLSDN----------------PGLGERGLM 188 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-------CCCCTT-CCEEECCSC----------------TTCHHHHHH
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-------hccCCC-CCEEECCCC----------------CCccchhhh
Confidence 33 34567999999999999998777777 777777 999999999 55432 2
Q ss_pred -CcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC---CCCCEEEcc
Q 038586 218 -EHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL---DNILEIVES 289 (353)
Q Consensus 218 -p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l---~~L~~L~Ls 289 (353)
+..++.+++|++|++++|+++. +|......++ .+++|++|++++ +.+|..+..+ ++|++|+++
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~--------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNTGMET-PTGVCAALAA--------AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH--------HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh--------cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 2334688999999999999963 2200000234 789999999999 4447777776 699999999
Q ss_pred CCCCCCCCcccccccCcccchhccccC
Q 038586 290 EVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 290 ~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
+|++..+|. .+. ++|+.||...+
T Consensus 260 ~N~l~~lp~--~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 260 FAGLEQVPK--GLP--AKLRVLDLSSN 282 (310)
T ss_dssp SSCCCSCCS--CCC--SCCSCEECCSC
T ss_pred CCCCCchhh--hhc--CCCCEEECCCC
Confidence 999999999 554 78888886544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-18 Score=157.30 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=127.7
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHh-hccccccEEEeecCCCCCCCCCcccCCCCCCcEE
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLC-LNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLN 137 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L-~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L 137 (353)
|..|.++.|+. ..++.+++++ +.+. +..+..+ .+++ ++|++++|.+.+. .| .+..+++|++|
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~--------~~~~---~~~~~~~~~~~l--~~L~l~~n~l~~~-~~-~~~~~~~L~~L 98 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTG--------KNLH---PDVTGRLLSQGV--IAFRCPRSFMDQP-LA-EHFSPFRVQHM 98 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTT--------CBCC---HHHHHHHHHTTC--SEEECTTCEECSC-CC-SCCCCBCCCEE
T ss_pred HHHHHHHhcCc--hhheeecccc--------ccCC---HHHHHhhhhccc--eEEEcCCcccccc-ch-hhccCCCCCEE
Confidence 45699998753 3578999999 7765 3334332 1678 9999999999985 44 46689999999
Q ss_pred eccC---CCC-CCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC-cCCC--CCC--CCCCCc
Q 038586 138 TVDH---QGE-IIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN-QAND--IPC--SSNNNV 208 (353)
Q Consensus 138 ~Ls~---~~~-lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N-~l~~--i~~--~~~~~l 208 (353)
++++ .+. +|..+.++++|++|++++|.+++..+.. ++.+.. ++++++++| .+++ ++. .....+
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-------l~~~~~-L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-------LAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-------HTTCTT-CSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-------HhcCCC-CCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 9998 333 7777888999999999999887655443 334444 566666665 2221 110 001111
Q ss_pred cccc------eeee-CCcchhccC-CCCEEEcccC--cCc-ccCCCCCccccchhhhhcccCCCccceeecCCC-----C
Q 038586 209 QTVE------FEGE-MEHSLSEVY-DIFDVERYSS--SLD-QILESERTEDHGDAAIQNKQQEAVEEEALLAQQ-----N 272 (353)
Q Consensus 209 ~~~~------l~g~-~p~~l~~l~-~L~~L~Ls~N--~l~-g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-----~ 272 (353)
+.+. +++. ++..+..++ +|++|++++| .++ +.+| ..++ .+++|+.|++++. .
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~----~~~~--------~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----TLVR--------RCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----HHHH--------HCTTCSEEECTTCTTCCGG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH----HHHh--------hCCCCCEEeCCCCCcCCHH
Confidence 1111 1111 344455566 6666666666 333 2333 3344 5666666666651 2
Q ss_pred CchhhcCCCCCCEEEccCCCCCCCCcc-cccccCcccchhccc
Q 038586 273 DPIELLCLDNILEIVESEVEIDSLPDR-LVFDVREFLSELDQI 314 (353)
Q Consensus 273 iP~~l~~l~~L~~L~Ls~N~l~~iP~~-~~~~~l~~L~~Ld~~ 314 (353)
.+..+..+++|++|++++|. +..|.. ..++.+++|+.|+..
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECT
T ss_pred HHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEecc
Confidence 24455566666666666664 111110 024555556655543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-16 Score=155.62 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=132.8
Q ss_pred CCCC-CCCCCCCCccccceEec------CCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCC
Q 038586 48 SSWG-REDDKRNCCKWRGVCCN------NTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFG 120 (353)
Q Consensus 48 ~~W~-~~~~~~~~C~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~ 120 (353)
..|. +.+ ||.|.|..|. -....++.|++++ ++++ .+|..+. ++| ++|++++|.++
T Consensus 13 ~~W~~~~~----~~~~~~r~~~~~~~~~c~~~~l~~L~ls~--------n~L~-~lp~~l~---~~L--~~L~L~~N~l~ 74 (622)
T 3g06_A 13 SAWRRAAP----AEESRGRAAVVQKMRACLNNGNAVLNVGE--------SGLT-TLPDCLP---AHI--TTLVIPDNNLT 74 (622)
T ss_dssp HHHHHTCC----GGGHHHHHHHHHHHHHHHHHCCCEEECCS--------SCCS-CCCSCCC---TTC--SEEEECSCCCS
T ss_pred HHHHhcCC----cchhccccccCcccccccCCCCcEEEecC--------CCcC-ccChhhC---CCC--cEEEecCCCCC
Confidence 3463 455 8888664321 0112477888888 7776 6776442 567 88888888887
Q ss_pred CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce---ecCccccccCCCcCCCC-----ccccce
Q 038586 121 GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ---ILEKDQHDEGSQNGQQG-----AEAEAV 190 (353)
Q Consensus 121 ~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g---~lp~~~~L~l~~~~~l~-----~~l~~l 190 (353)
. +|. .+++|++|+|++ ...+|. .+++|++|++++|++++ .++.+++|++++|.... ..+++|
T Consensus 75 ~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L 146 (622)
T 3g06_A 75 S--LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQEL 146 (622)
T ss_dssp C--CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred C--CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEE
Confidence 6 566 467788888877 556666 56777778887777664 23345666666653321 126677
Q ss_pred eccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccch-----hhhhcc-cC
Q 038586 191 CIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGD-----AAIQNK-QQ 259 (353)
Q Consensus 191 ~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~-----~~~~~~-~~ 259 (353)
++++|+++.+|.. ...++.+ .++ .+| ..+++|+.|++++|++++ +|... ..+.. ..+... ..
T Consensus 147 ~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~~~-~~L~~L~L~~N~l~~l~~~ 219 (622)
T 3g06_A 147 SVSDNQLASLPAL-PSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPTLP-SELYKLWAYNNRLTSLPAL 219 (622)
T ss_dssp ECCSSCCSCCCCC-CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCSSCCCC
T ss_pred ECcCCcCCCcCCc-cCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCCcc-chhhEEECcCCcccccCCC
Confidence 7777777666532 1222222 222 133 234667777777777765 32000 01110 000000 02
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++|+.|++++ ..+| ..+++|+.|++++|+|..+|. . +++|+.|+..
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~---~~~L~~L~Ls 269 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--L---PSGLLSLSVY 269 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--C---CTTCCEEECC
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--c---cccCcEEeCC
Confidence 36788888887 4556 456788899999998888887 3 3556666543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=143.32 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=136.4
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+. .++ .+..+ ++| ++|++++|.+++ ++. +..+++|++|++++ ...+|. ++
T Consensus 47 ~L~~L~l~~--------~~i~-~~~-~~~~l-~~L--~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 47 SIDQIIANN--------SDIK-SVQ-GIQYL-PNV--TKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred cccEEEccC--------CCcc-cCh-hHhcC-CCC--CEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 688999999 7876 454 47888 999 999999999998 455 89999999999999 555554 89
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
.+++|++|++++|++.+ ++. +..+.. ++.+++++| ++++. ..++.+++|++|
T Consensus 110 ~l~~L~~L~L~~n~i~~-~~~--------l~~l~~-L~~L~l~~n----------------~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISD-ING--------LVHLPQ-LESLYLGNN----------------KITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCTTCCEEECTTSCCCC-CGG--------GGGCTT-CCEEECCSS----------------CCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCcCCC-Chh--------hcCCCC-CCEEEccCC----------------cCCcc--hhhccCCCCCEE
Confidence 99999999999999885 332 455666 899999999 55543 578899999999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++++|++++. + . ++ .+++|+.|++++ ..+| .+..+++|+.|++++|++...|.
T Consensus 162 ~L~~N~l~~~-~----~-l~--------~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 162 SLEDNQISDI-V----P-LA--------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ECCSSCCCCC-G----G-GT--------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred EccCCccccc-h----h-hc--------CCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccCCcc
Confidence 9999999864 3 2 66 899999999999 5565 48899999999999999955554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=135.30 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=100.8
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCC-cccCCCCCCcEEeccC--CCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVP-EFVGSLSKLSLNTVDH--QGEIIH-SVP 150 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P-~~~~~L~~L~~L~Ls~--~~~lP~-~l~ 150 (353)
+.+++++ +.++ .+|..+ . ..+ ++|+|++|.+++. .| ..|..+++|++|+|++ ...+++ .++
T Consensus 14 ~~l~~s~--------n~l~-~iP~~~--~-~~~--~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSN--------QKLN-KIPEHI--P-QYT--AELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCS--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCC--------CCcc-cCccCC--C-CCC--CEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 3788998 8886 577654 2 567 8999999999885 34 3477788888888877 444443 677
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|++|++++|++++..|.. +..+.. +++|++++| ++++..|..|..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKM-------FKGLES-LKTLMLRSN----------------RITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGG-------GTTCSS-CCEEECTTS----------------CCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCCEEECCCCccCccCHhH-------hcCCcC-CCEEECCCC----------------cCCeECHhHcCCCccCCEE
Confidence 7777777777777776554444 444555 666666666 5555555556666666666
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCC-CCC
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEI-DSL 296 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~~i 296 (353)
+|++|++++..| ..+..+++|++|++++|.+ ...
T Consensus 135 ~L~~N~l~~~~~--------------------------------~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 135 SLYDNQITTVAP--------------------------------GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ECTTSCCCCBCT--------------------------------TTTTTCTTCCEEECCSCCEECSG
T ss_pred ECCCCcCCEECH--------------------------------HHhcCCCCCCEEEecCcCCcCCC
Confidence 666666655444 3455567788888888888 443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-18 Score=173.94 Aligned_cols=195 Identities=11% Similarity=-0.009 Sum_probs=73.3
Q ss_pred ccccCcHHHHHHHHHHHhCCCCC-CCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHH
Q 038586 21 IIIRCIDEEKEALLTFEQSPVDE-YGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSA 99 (353)
Q Consensus 21 ~~~~~~~~e~~aLl~~k~~~~~~-~~~~~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~ 99 (353)
.+.+..+.++++|+++......+ +.....|.... ...+.|.++.++. ++++.++|.+ +.+.+ ++..
T Consensus 125 ~s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~--~~~~~l~L~~--------n~~~~-~~~~ 191 (727)
T 4b8c_D 125 ASKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDS--TPSGTATNSAVST--PLTPKIELFA--------NGKDE-ANQA 191 (727)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred hhhhccccchhhhhhhhhhcccccCcccCCCcCCC--CccccCCCceecC--CccceEEeeC--------CCCCc-chhh
Confidence 34446677889999998776422 22234563322 1257798888754 5788888877 55543 2322
Q ss_pred HHHhhccc---cccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCcccc
Q 038586 100 LLLCLNCM---IYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQH 174 (353)
Q Consensus 100 l~~L~~~L---~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~ 174 (353)
+... ..| .+..++++.|.+.. .|..+..+++|+.|+|++ ...+|..++++++|++|+|++|.++ .+|..
T Consensus 192 ~l~~-l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 265 (727)
T 4b8c_D 192 LLQH-KKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-- 265 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG--
T ss_pred Hhhc-CccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh--
Confidence 2111 111 00122222233331 345556666666666666 4456655556666666666666665 55555
Q ss_pred ccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhh
Q 038586 175 DEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAI 254 (353)
Q Consensus 175 L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~ 254 (353)
++.+.. |++|+|++| .++ .+|.+|+++++|++|+|++|.|+ .+| ..++
T Consensus 266 -----~~~l~~-L~~L~Ls~N----------------~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp----~~~~---- 313 (727)
T 4b8c_D 266 -----IKNLSN-LRVLDLSHN----------------RLT-SLPAELGSCFQLKYFYFFDNMVT-TLP----WEFG---- 313 (727)
T ss_dssp -----GGGGTT-CCEEECTTS----------------CCS-SCCSSGGGGTTCSEEECCSSCCC-CCC----SSTT----
T ss_pred -----hhCCCC-CCEEeCcCC----------------cCC-ccChhhcCCCCCCEEECCCCCCC-ccC----hhhh----
Confidence 455555 666666666 444 45555666666666666666664 345 4455
Q ss_pred hcccCCCccceeecCC
Q 038586 255 QNKQQEAVEEEALLAQ 270 (353)
Q Consensus 255 ~~~~~l~~L~~L~L~~ 270 (353)
.+++|+.|+|++
T Consensus 314 ----~l~~L~~L~L~~ 325 (727)
T 4b8c_D 314 ----NLCNLQFLGVEG 325 (727)
T ss_dssp ----SCTTCCCEECTT
T ss_pred ----cCCCccEEeCCC
Confidence 566666666665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=143.35 Aligned_cols=156 Identities=10% Similarity=0.110 Sum_probs=115.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +++ +..+ ++| ++|++++|.+++ +| .+..+++|++|++++ ...+|. +
T Consensus 63 ~~L~~L~L~~--------n~i~~-~~~-~~~l-~~L--~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l 125 (308)
T 1h6u_A 63 NNLIGLELKD--------NQITD-LAP-LKNL-TKI--TELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-L 125 (308)
T ss_dssp TTCCEEECCS--------SCCCC-CGG-GTTC-CSC--CEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-G
T ss_pred CCCCEEEccC--------CcCCC-Chh-HccC-CCC--CEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-h
Confidence 4799999999 88874 555 8888 999 999999999988 55 688999999999999 556665 8
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-CCCCCcccc-----ceeeeCCcchhc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-SSNNNVQTV-----EFEGEMEHSLSE 223 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~-----~l~g~~p~~l~~ 223 (353)
..+++|++|++++|.+++..+ +..+.. ++.+++++|++++++. .....++.+ .+++ ++. +..
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~---------l~~l~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~ 193 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP---------LAGLTN-LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP-LAS 193 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---------GGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGG
T ss_pred cCCCCCCEEECCCCccCcCcc---------ccCCCC-ccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh-hcC
Confidence 999999999999999875322 122333 5555555555555432 222233322 4443 232 888
Q ss_pred cCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 224 VYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
+++|++|++++|++++..| +. .+++|+.|++++
T Consensus 194 l~~L~~L~L~~N~l~~~~~------l~--------~l~~L~~L~l~~ 226 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP------LA--------NTSNLFIVTLTN 226 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG------GT--------TCTTCCEEEEEE
T ss_pred CCCCCEEEccCCccCcccc------cc--------CCCCCCEEEccC
Confidence 9999999999999986433 56 899999999998
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=133.12 Aligned_cols=144 Identities=7% Similarity=0.012 Sum_probs=114.0
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.++++++.++. +|..+. ++|++|++++ ...+|+ .+..+++|++|+|++|++++..|.. +..+..
T Consensus 14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-------~~~l~~- 81 (220)
T 2v9t_B 14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-------FQGLRS- 81 (220)
T ss_dssp TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-------TTTCSS-
T ss_pred CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-------hhCCcC-
Confidence 678999999987 787665 6899999998 555654 6888999999999999998777777 777777
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|++++| .+++..+..|..+++|++|+|++|++++..| ..++ .+++|+.|
T Consensus 82 L~~L~Ls~N----------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 133 (220)
T 2v9t_B 82 LNSLVLYGN----------------KITELPKSLFEGLFSLQLLLLNANKINCLRV----DAFQ--------DLHNLNLL 133 (220)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred CCEEECCCC----------------cCCccCHhHccCCCCCCEEECCCCCCCEeCH----HHcC--------CCCCCCEE
Confidence 888999999 5554334556788889999999999988777 6777 78888888
Q ss_pred ecCC---CCCch-hhcCCCCCCEEEccCCCC
Q 038586 267 LLAQ---QNDPI-ELLCLDNILEIVESEVEI 293 (353)
Q Consensus 267 ~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l 293 (353)
++++ ..+|. .+..+++|++|++++|.+
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8887 44443 477788888888888887
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=138.83 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=138.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+.+..+ +..+ ++| ++|++++|.++. +|. +..+++|++|++++ ...+++ +.++++|++|++++|.+++
T Consensus 34 ~~~~~~~~--~~~l-~~L--~~L~l~~~~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 34 KSVTDAVT--QNEL-NSI--DQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp SCTTSEEC--HHHH-HTC--CEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCcccccc--hhhc-Ccc--cEEEccCCCccc--Chh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 45544333 4567 899 999999999987 554 88999999999999 666666 9999999999999999885
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
+|. +..+.. ++++++++| ++++ + +.+..+++|++|++++|++++. +
T Consensus 105 -~~~--------l~~l~~-L~~L~L~~n----------------~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~----- 150 (291)
T 1h6t_A 105 -LSS--------LKDLKK-LKSLSLEHN----------------GISD-I-NGLVHLPQLESLYLGNNKITDI-T----- 150 (291)
T ss_dssp -GGG--------GTTCTT-CCEEECTTS----------------CCCC-C-GGGGGCTTCCEEECCSSCCCCC-G-----
T ss_pred -Chh--------hccCCC-CCEEECCCC----------------cCCC-C-hhhcCCCCCCEEEccCCcCCcc-h-----
Confidence 332 455666 899999999 5553 2 4688899999999999999864 3
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
.++ .+++|+.|++++ ..++. +..+++|++|++++|.+..+|. +..++.|+.|+..
T Consensus 151 ~l~--------~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 151 VLS--------RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELF 208 (291)
T ss_dssp GGG--------GCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEE
T ss_pred hhc--------cCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh---hccCCCCCEEECc
Confidence 566 899999999999 55555 8899999999999999988876 7888888888754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=132.61 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=121.9
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC-CCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE-IIHSVPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~-lP~~l~~ 151 (353)
..+++++ ++++ .+|..+ . +.| ++|++++|.+++. .|..|..+++|++|+|++ ... .|..|.+
T Consensus 14 ~~v~c~~--------~~l~-~iP~~l--~-~~l--~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRG--------KGLT-EIPTNL--P-ETI--TEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTT--------SCCS-SCCSSC--C-TTC--CEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCC--------CCcC-cCCCcc--C-cCC--CEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 3588888 8887 677643 2 678 9999999999985 555799999999999999 444 4788999
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
+++|++|+|++|++++..+.. +..+.. ++++++++| ++++..|..|..+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~-------f~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSL-------FEGLFS-LQLLLLNAN----------------KINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhH-------ccCCCC-CCEEECCCC----------------CCCEeCHHHcCCCCCCCEEE
Confidence 999999999999998544444 566777 999999999 77777788899999999999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
|++|++++..+ ..+. .+++|+.|++++
T Consensus 135 L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~ 161 (220)
T 2v9t_B 135 LYDNKLQTIAK----GTFS--------PLRAIQTMHLAQ 161 (220)
T ss_dssp CCSSCCSCCCT----TTTT--------TCTTCCEEECCS
T ss_pred CCCCcCCEECH----HHHh--------CCCCCCEEEeCC
Confidence 99999998777 6778 899999999998
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=138.12 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=136.7
Q ss_pred CcEEEEEcCCCCCccccccC-CcccccHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEeccC--CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKI-LKGTISSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~-l~g~lp~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~ 147 (353)
.+++.|++++ |. +++..+..|..+ ++| ++|++++ |.+++. .|..|.++++|++|++++ ...+|.
T Consensus 55 ~~L~~L~l~~--------n~~l~~i~~~~f~~l-~~L--~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 55 PNISRIYVSI--------DVTLQQLESHSFYNL-SKV--THIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp TTCCEEEEEC--------CSSCCEECTTTEESC-TTC--CEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred CCCcEEeCCC--------CCCcceeCHhHcCCC-cCC--cEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCccccc
Confidence 4799999999 86 764334478888 999 9999999 999985 456799999999999999 666887
Q ss_pred CCCCCCCCC---EEEccCc-ccceecCccccccCCCcCCCCcccc-ceeccCCcCCCCCCCCCCCccccceeeeCCcchh
Q 038586 148 SVPEYPTLF---DVEGYMA-SLVQILEKDQHDEGSQNGQQGAEAE-AVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLS 222 (353)
Q Consensus 148 ~l~~L~~L~---~L~Ls~N-~l~g~lp~~~~L~l~~~~~l~~~l~-~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~ 222 (353)
++.+++|+ +|++++| .+++..+.. +..+.. ++ .+++++| +++ .+|....
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~-------~~~l~~-L~~~L~l~~n----------------~l~-~i~~~~~ 176 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNA-------FQGLCN-ETLTLKLYNN----------------GFT-SVQGYAF 176 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTT-------TTTTBS-SEEEEECCSC----------------CCC-EECTTTT
T ss_pred -cccccccccccEEECCCCcchhhcCccc-------ccchhc-ceeEEEcCCC----------------CCc-ccCHhhc
Confidence 88889998 9999999 888655555 666777 88 9999999 666 4454443
Q ss_pred ccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCC-CccceeecCC---CCCchhhcCCCCCCEEEccCCC
Q 038586 223 EVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQE-AVEEEALLAQ---QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 223 ~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l-~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
..++|++|++++|+ +++..+ ..++ .+ ++|+.|++++ ..+|.. .+++|+.|+++++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~----~~~~--------~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDK----DAFG--------GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECT----TTTT--------TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCCEEEcCCCCCcccCCH----HHhh--------ccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 44789999999995 987666 6677 88 9999999998 666765 67899999998763
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=132.95 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
..|..+++|++|+|++|++++..+ ..++ .+++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~--------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPS----AVFD--------RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hhcccCCCcCEEECCCCcCCccCh----hHhC--------cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 345566677777777777766555 4455 667777777776 5667778888999999999999977
Q ss_pred CCcccccccCcccchhccccCCCccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
+|+. .|..++.|+.|+...++..+.|..+..
T Consensus 150 ~~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 180 (229)
T 3e6j_A 150 IPHG-AFDRLSSLTHAYLFGNPWDCECRDIMY 180 (229)
T ss_dssp CCTT-TTTTCTTCCEEECTTSCBCTTBGGGHH
T ss_pred cCHH-HHhCCCCCCEEEeeCCCccCCcchhHH
Confidence 7752 689999999999999999988864433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=146.35 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=126.9
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHH-HhhccccccEEEeecCCCCCCCCCcccC
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALL-LCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~-~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
|.+..+.|... ...++.|+|++ |.+++..+..+. .+ ++| ++|+|++|.|++. .|..|.
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~--------N~l~~l~~~~~~~~l-~~L--~~L~L~~N~i~~i-~~~~~~ 85 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSH--------NNLSRLRAEWTPTRL-TNL--HSLLLSHNHLNFI-SSEAFV 85 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCS--------SCCCEECTTSSSSCC-TTC--CEEECCSSCCCEE-CTTTTT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCC--------CCCCccChhhhhhcc-ccc--CEEECCCCcCCcc-Chhhcc
Confidence 67888888532 23578899999 999865555566 88 999 9999999999996 567799
Q ss_pred CCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 130 SLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
++++|++|+|++ ...+|+ .|.++++|++|+|++|++++..|.. +..+.. ++.|++++|+++.+|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------~~~l~~-L~~L~L~~N~l~~l~----- 152 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------FEDMAQ-LQKLYLSQNQISRFP----- 152 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTT-CCEEECCSSCCCSCC-----
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-------hCCccc-CCEEECCCCcCCeeC-----
Confidence 999999999999 666655 5889999999999999999877777 777888 999999999444333
Q ss_pred CccccceeeeCCcch---hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc--cceeecCC
Q 038586 207 NVQTVEFEGEMEHSL---SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV--EEEALLAQ 270 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l---~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~--L~~L~L~~ 270 (353)
+..+ ..+++|++|+|++|+|++..+ ..+. .++. ++.|++++
T Consensus 153 -----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~--------~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 153 -----------VELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQ--------KLPAWVKNGLYLHN 198 (361)
T ss_dssp -----------GGGTC----CTTCCEEECCSSCCCCCCH----HHHH--------HSCHHHHTTEECCS
T ss_pred -----------HHHhcCcccCCcCCEEECCCCCCCccCH----HHhh--------hccHhhcceEEecC
Confidence 2223 578999999999999986554 4555 4554 35666666
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=129.77 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=108.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.++.+++.++. +|..+ .++|++|++++ ...+|. .++++++|++|++++|++++..+.. +..+..
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~- 77 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------FNKLTS- 77 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------TTTCTT-
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh-------cCCCCC-
Confidence 678888898887 67655 46899999998 555655 4688999999999999888554444 556666
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
++++++++| ++++..+..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 78 L~~L~Ls~n----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 129 (208)
T 2o6s_A 78 LTYLNLSTN----------------QLQSLPNGVFDKLTQLKELALNTNQLQSLPD----GVFD--------KLTQLKDL 129 (208)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred cCEEECCCC----------------cCCccCHhHhcCccCCCEEEcCCCcCcccCH----hHhc--------cCCcCCEE
Confidence 888888888 6665445567888889999999888887655 5566 77777777
Q ss_pred ecCC---CCCchh-hcCCCCCCEEEccCCCC-CCCC
Q 038586 267 LLAQ---QNDPIE-LLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 267 ~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
++++ ..+|.. +..+++|++|++++|.+ +..|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 7777 344443 66677777777777766 4444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-17 Score=156.15 Aligned_cols=202 Identities=13% Similarity=0.002 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHH----HHHhhccccccEEEeecCC---CCCCCCCccc-------CCCCCCcEEe
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSA----LLLCLNCMIYDIWTLVTIN---FGGIPVPEFV-------GSLSKLSLNT 138 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~----l~~L~~~L~~~~L~Ls~N~---l~~~~~P~~~-------~~L~~L~~L~ 138 (353)
+++.|+|++ |.+++..+.. +..+ ++| ++|+|++|. +++. +|..+ ..+++|++|+
T Consensus 33 ~L~~L~L~~--------n~i~~~~~~~l~~~l~~~-~~L--~~L~Ls~~~~~~l~~~-~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 33 SVKEIVLSG--------NTIGTEAARWLSENIASK-KDL--EIAEFSDIFTGRVKDE-IPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp CCCEEECTT--------SEECHHHHHHHHHTTTTC-TTC--CEEECCSCCTTSCGGG-SHHHHHHHHHHHTTCTTCCEEE
T ss_pred CccEEECCC--------CCCCHHHHHHHHHHHHhC-CCc--cEEeCcccccCccccc-hhHHHHHHHHHHhhCCcccEEE
Confidence 578888888 7777654443 4467 788 888888854 3444 55544 6788888888
Q ss_pred ccC--CCC-----CCCCCCCCCCCCEEEccCccccee--------c------------CccccccCCCcCCC--------
Q 038586 139 VDH--QGE-----IIHSVPEYPTLFDVEGYMASLVQI--------L------------EKDQHDEGSQNGQQ-------- 183 (353)
Q Consensus 139 Ls~--~~~-----lP~~l~~L~~L~~L~Ls~N~l~g~--------l------------p~~~~L~l~~~~~l-------- 183 (353)
|++ .+. +|..+.++++|++|+|++|.+.+. + +.+++|++++|...
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 888 332 566777788888888888887531 1 55666666655332
Q ss_pred ------CccccceeccCCcCCCCCCCCCCCcccccee--e---eCCcchhccCCCCEEEcccCcCc----ccCCCCCccc
Q 038586 184 ------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFE--G---EMEHSLSEVYDIFDVERYSSSLD----QILESERTED 248 (353)
Q Consensus 184 ------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~--g---~~p~~l~~l~~L~~L~Ls~N~l~----g~~p~~~~~~ 248 (353)
.. ++++++++| .++ | .+|..+..+++|++|+|++|.++ +.+| ..
T Consensus 181 ~~l~~~~~-L~~L~L~~n----------------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~ 239 (386)
T 2ca6_A 181 KTFQSHRL-LHTVKMVQN----------------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IA 239 (386)
T ss_dssp HHHHHCTT-CCEEECCSS----------------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HH
T ss_pred HHHHhCCC-cCEEECcCC----------------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HH
Confidence 22 566666666 333 1 23335666677777777777764 3445 45
Q ss_pred cchhhhhcccCCCccceeecCCCC--------Cchhhc--CCCCCCEEEccCCCCCC-----CCccccc-ccCcccchhc
Q 038586 249 HGDAAIQNKQQEAVEEEALLAQQN--------DPIELL--CLDNILEIVESEVEIDS-----LPDRLVF-DVREFLSELD 312 (353)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~L~~~~--------iP~~l~--~l~~L~~L~Ls~N~l~~-----iP~~~~~-~~l~~L~~Ld 312 (353)
+. .+++|+.|++++.. +|..+. .+++|++|+|++|.++. +|. .+ .+++.|+.|+
T Consensus 240 l~--------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 240 LK--------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLE 309 (386)
T ss_dssp GG--------GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEE
T ss_pred Hc--------cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEE
Confidence 55 66677777776622 244442 26677777777777733 666 44 4456666666
Q ss_pred cccCC
Q 038586 313 QIAEP 317 (353)
Q Consensus 313 ~~~~~ 317 (353)
...+.
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 54443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=131.31 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
+++++++|.++. +|..+. ..+++|+|++ ...+ |. .+.++++|++|++++|++++..+.. +..+..
T Consensus 14 ~~l~~s~n~l~~--iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-------FEGASG 82 (220)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-------TTTCTT
T ss_pred CEeEeCCCCccc--CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-------hCCCCC
Confidence 677888888776 666543 2345666666 3333 21 2455666666666666655444433 444444
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccce
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEE 265 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~ 265 (353)
+++|++++| ++++..|..|..+++|++|++++|++++..|
T Consensus 83 -L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------- 122 (220)
T 2v70_A 83 -VNEILLTSN----------------RLENVQHKMFKGLESLKTLMLRSNRITCVGN----------------------- 122 (220)
T ss_dssp -CCEEECCSS----------------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-----------------------
T ss_pred -CCEEECCCC----------------ccCccCHhHhcCCcCCCEEECCCCcCCeECH-----------------------
Confidence 555555555 4443334445555555555555555544333
Q ss_pred eecCCCCCchhhcCCCCCCEEEccCCCCCCC-CcccccccCcccchhccccCCCcccccccccccc
Q 038586 266 ALLAQQNDPIELLCLDNILEIVESEVEIDSL-PDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 266 L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~i-P~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
..+..+++|++|+|++|++..+ |. .|..++.|+.|+...++..+.|...+...|
T Consensus 123 ---------~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~ 177 (220)
T 2v70_A 123 ---------DSFIGLSSVRLLSLYDNQITTVAPG--AFDTLHSLSTLNLLANPFNCNCYLAWLGEW 177 (220)
T ss_dssp ---------TSSTTCTTCSEEECTTSCCCCBCTT--TTTTCTTCCEEECCSCCEECSGGGHHHHHH
T ss_pred ---------hHcCCCccCCEEECCCCcCCEECHH--HhcCCCCCCEEEecCcCCcCCCchHHHHHH
Confidence 4566778999999999999544 77 899999999999999999888886555555
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=138.99 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.++++. +.++ .++ .+..+ ++| ++|++++|.++. +| .+..+++|++|++++ ...+|+ ++
T Consensus 20 ~l~~l~l~~--------~~i~-~~~-~~~~l-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~ 82 (263)
T 1xeu_A 20 NAVKQNLGK--------QSVT-DLV-SQKEL-SGV--QNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LK 82 (263)
T ss_dssp HHHHHHHTC--------SCTT-SEE-CHHHH-TTC--SEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred HHHHHHhcC--------CCcc-ccc-chhhc-CcC--cEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hc
Confidence 345566676 7776 455 57888 999 999999999987 67 688999999999999 666776 99
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|++|++++|++++ +|.. .. .. ++.+++++| ++++ + +.+..+++|++|
T Consensus 83 ~l~~L~~L~L~~N~l~~-l~~~-------~~--~~-L~~L~L~~N----------------~l~~-~-~~l~~l~~L~~L 133 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKN-LNGI-------PS--AC-LSRLFLDNN----------------ELRD-T-DSLIHLKNLEIL 133 (263)
T ss_dssp TCSSCCEEECCSSCCSC-CTTC-------CC--SS-CCEEECCSS----------------CCSB-S-GGGTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCC-cCcc-------cc--Cc-ccEEEccCC----------------ccCC-C-hhhcCcccccEE
Confidence 99999999999999985 5543 22 44 899999999 5554 2 358899999999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++++|++++. | .++ .+++|+.|++++ ..+ ..+..+++|+.|++++|++...|.
T Consensus 134 ~Ls~N~i~~~-~-----~l~--------~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 134 SIRNNKLKSI-V-----MLG--------FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ECTTSCCCBC-G-----GGG--------GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ECCCCcCCCC-h-----HHc--------cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 9999999863 4 466 899999999999 333 568889999999999999955564
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=153.06 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=113.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|+|++ |.++ .+| ..+ ++| ++|++++|.|++ +|. +.+ +|++|+|++ ...+|.
T Consensus 80 ~~L~~L~Ls~--------N~l~-~ip---~~l-~~L--~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 80 PQITVLEITQ--------NALI-SLP---ELP-ASL--EYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp TTCSEEECCS--------SCCS-CCC---CCC-TTC--CEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCCC--
T ss_pred CCCCEEECcC--------CCCc-ccc---ccc-CCC--CEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCCC--
Confidence 4789999999 8888 788 346 899 999999999998 788 665 999999999 566887
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhcc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEV 224 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l 224 (353)
.+++|++|++++|.+++ +|.. +.. ++.|++++|+++.+|. ....++.+ .++ .+|. +..
T Consensus 138 -~l~~L~~L~Ls~N~l~~-lp~~----------l~~-L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTM-LPEL----------PTS-LEVLSVRNNQLTFLPE-LPESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC----------CTT-CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-SCCC-CC--
T ss_pred -cCccccEEeCCCCccCc-CCCc----------CCC-cCEEECCCCCCCCcch-hhCCCCEEECcCCCCC-chhh-HHH-
Confidence 68999999999999985 5531 122 4555555555555544 11333322 333 3454 443
Q ss_pred CCC-------CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC
Q 038586 225 YDI-------FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL 280 (353)
Q Consensus 225 ~~L-------~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l 280 (353)
+| ++|++++|+|+. +| ..+. .+++|+.|++++ +.+|..+..+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~-lp----~~l~--------~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITH-IP----ENIL--------SLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------CCEEEECCSSCCCC-CC----GGGG--------GSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCccee-cC----HHHh--------cCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 56 999999999985 78 7788 899999999999 4556666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=150.66 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ +.+. .+| .+..+ ++| ++|+|++|.+++ +|+ +..+++|++|+|++ ...+| .+
T Consensus 43 ~~L~~L~l~~--------n~i~-~l~-~l~~l-~~L--~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-~l 105 (605)
T 1m9s_A 43 NSIDQIIANN--------SDIK-SVQ-GIQYL-PNV--TKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDLS-SL 105 (605)
T ss_dssp TTCCCCBCTT--------CCCC-CCT-TGGGC-TTC--CEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred CCCCEEECcC--------CCCC-CCh-HHccC-CCC--CEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCCh-hh
Confidence 3678889998 7776 455 58888 999 999999999998 455 89999999999999 55555 78
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+.+++|++|+|++|.+.+ ++. +..+.. |+.|++++| .+++. ..++.+++|+.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l~~--------l~~l~~-L~~L~Ls~N----------------~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-ING--------LVHLPQ-LESLYLGNN----------------KITDI--TVLSRLTKLDT 157 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-CGG--------GGGCTT-CSEEECCSS----------------CCCCC--GGGGSCTTCSE
T ss_pred ccCCCCCEEEecCCCCCC-Ccc--------ccCCCc-cCEEECCCC----------------ccCCc--hhhcccCCCCE
Confidence 999999999999999885 332 455666 899999999 55543 57889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLP 297 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP 297 (353)
|+|++|++.+..| ++ .+++|+.|+|++ ..+| .+..+++|+.|+|++|.+...|
T Consensus 158 L~Ls~N~l~~~~~------l~--------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 158 LSLEDNQISDIVP------LA--------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EECCSSCCCCCGG------GT--------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred EECcCCcCCCchh------hc--------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 9999999987443 66 899999999999 4454 6889999999999999994444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-16 Score=150.18 Aligned_cols=83 Identities=8% Similarity=-0.012 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCccccccCCccccc----HHHHHhhc-cccccEEEeecCCCCCCCCCcccCCC-----CCCcEEeccC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGTIS----SALLLCLN-CMIYDIWTLVTINFGGIPVPEFVGSL-----SKLSLNTVDH- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp----~~l~~L~~-~L~~~~L~Ls~N~l~~~~~P~~~~~L-----~~L~~L~Ls~- 141 (353)
+++.|+|++ |.+++.-+ ..+..+ + +| ++|+|++|.+++. .+..+..+ ++|++|+|++
T Consensus 23 ~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~-~~~L--~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 23 GVTSLDLSL--------NNLYSISTVELIQAFANT-PASV--TSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TCCEEECTT--------SCGGGSCHHHHHHHHHTC-CTTC--CEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CceEEEccC--------CCCChHHHHHHHHHHHhC-CCce--eEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCC
Confidence 578888888 77765555 455666 6 78 8888888888776 56556554 7888888887
Q ss_pred -CC-CCCCC----CCCC-CCCCEEEccCcccce
Q 038586 142 -QG-EIIHS----VPEY-PTLFDVEGYMASLVQ 167 (353)
Q Consensus 142 -~~-~lP~~----l~~L-~~L~~L~Ls~N~l~g 167 (353)
.+ ..+.. +..+ ++|++|++++|.+++
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 33 22322 3334 788888888888764
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=146.48 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=139.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+...++ +..+ ++| +.|++++|.+.. +| .+..+++|+.|+|++ ...+|+ +..+++|++|+|++|.+.+
T Consensus 31 ~~i~~~~~--~~~L-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 31 KSVTDAVT--QNEL-NSI--DQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp SCTTSEEC--HHHH-TTC--CCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CCcccccc--hhcC-CCC--CEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 55554443 5678 999 999999999987 55 589999999999999 566666 8999999999999999884
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
+| . +..+.. |+.|++++| .+.+ + +.+..+++|+.|+|++|++++. +
T Consensus 102 -l~-~-------l~~l~~-L~~L~Ls~N----------------~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~----- 147 (605)
T 1m9s_A 102 -LS-S-------LKDLKK-LKSLSLEHN----------------GISD-I-NGLVHLPQLESLYLGNNKITDI-T----- 147 (605)
T ss_dssp -CT-T-------STTCTT-CCEEECTTS----------------CCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-----
T ss_pred -Ch-h-------hccCCC-CCEEEecCC----------------CCCC-C-ccccCCCccCEEECCCCccCCc-h-----
Confidence 34 2 556667 899999999 5553 2 4588999999999999999864 3
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
.++ .+++|+.|+|++ ..+++ +..+++|+.|+|++|.|..+|. +..++.|+.|+..
T Consensus 148 ~l~--------~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 148 VLS--------RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELF 205 (605)
T ss_dssp GGG--------SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECC
T ss_pred hhc--------ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH---HccCCCCCEEEcc
Confidence 567 899999999999 44444 8899999999999999977755 7888899888754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=125.09 Aligned_cols=144 Identities=8% Similarity=0.025 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.|++++ +.++ .+| .+..+ ++| ++|++++|.++. ++.+..+++|++|++++ .+..|..+
T Consensus 45 ~L~~L~l~~--------n~i~-~l~-~l~~l-~~L--~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 45 SLTYITLAN--------INVT-DLT-GIEYA-HNI--KDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp TCCEEEEES--------SCCS-CCT-TGGGC-TTC--SEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred CccEEeccC--------CCcc-ChH-HHhcC-CCC--CEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhh
Confidence 688999999 8887 777 68889 999 999999997764 45789999999999999 44578889
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+.+++|++|++++|.+++..|.. +..+.. ++++++++| .+.+.+| .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~-------l~~l~~-L~~L~L~~n----------------~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTK-------INTLPK-VNSIDLSYN----------------GAITDIM-PLKTLPELKS 163 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHH-------HTTCSS-CCEEECCSC----------------TBCCCCG-GGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHH-------HhhCCC-CCEEEccCC----------------CCccccH-hhcCCCCCCE
Confidence 99999999999999999866666 667777 999999999 5333455 6889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ 271 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 271 (353)
|++++|++++ ++ .+. .+++|+.|++++.
T Consensus 164 L~l~~n~i~~-~~-----~l~--------~l~~L~~L~l~~N 191 (197)
T 4ezg_A 164 LNIQFDGVHD-YR-----GIE--------DFPKLNQLYAFSQ 191 (197)
T ss_dssp EECTTBCCCC-CT-----TGG--------GCSSCCEEEECBC
T ss_pred EECCCCCCcC-hH-----Hhc--------cCCCCCEEEeeCc
Confidence 9999999976 33 456 7899999999873
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-16 Score=150.72 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHh----hccccccEEEeecCCCCCCCCCcc----cCCC-CCCcEEeccC--
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLC----LNCMIYDIWTLVTINFGGIPVPEF----VGSL-SKLSLNTVDH-- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L----~~~L~~~~L~Ls~N~l~~~~~P~~----~~~L-~~L~~L~Ls~-- 141 (353)
+++.|+|++ |.+++..+..+..+ +++| ++|+|++|.+++. .+.. +..+ ++|++|+|++
T Consensus 52 ~L~~L~Ls~--------N~l~~~~~~~l~~~l~~~~~~L--~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 52 SVTSLNLSG--------NSLGFKNSDELVQILAAIPANV--TSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TCCEEECCS--------SCGGGSCHHHHHHHHHTSCTTC--CEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ceeEEECcC--------CCCCHHHHHHHHHHHhccCCCc--cEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCc
Confidence 566666666 66665555555442 1456 6667777666654 3432 2233 6667776666
Q ss_pred CCCCCC-C----CCC-CCCCCEEEccCcccc
Q 038586 142 QGEIIH-S----VPE-YPTLFDVEGYMASLV 166 (353)
Q Consensus 142 ~~~lP~-~----l~~-L~~L~~L~Ls~N~l~ 166 (353)
.+..+. . +.. .++|++|++++|.+.
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 222221 1 223 246666777666665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=124.40 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=102.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l 165 (353)
++++ .+|..+ . .++ ++|++++|.+++. .|. .|+.+++|++|+|++ .+..|..++++++|++|+|++|++
T Consensus 18 ~~l~-~ip~~~--~-~~l--~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 18 RGLK-EIPRDI--P-LHT--TELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp SCCS-SCCSCC--C-TTC--SEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CCcC-cCccCC--C-CCC--CEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 6774 777643 2 578 9999999999985 333 489999999999999 445578899999999999999999
Q ss_pred ceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 166 VQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 166 ~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
++..|.. +..+.. ++++++++| ++++..|..+..+++|++|++++|++.+..+
T Consensus 91 ~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKM-------FLGLHQ-LKTLNLYDN----------------QISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSS-------STTCTT-CCEEECCSS----------------CCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHH-------hcCCCC-CCEEECCCC----------------cCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9887776 677777 999999999 8888889999999999999999999987554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-15 Score=143.20 Aligned_cols=180 Identities=8% Similarity=0.027 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.+++++ +.+.+..+. +..+ ++| ++|++++|.+++..+|..+..+++|++|++++ .+..|..+
T Consensus 71 ~l~~L~l~~--------n~l~~~~~~-~~~~-~~L--~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 71 GVIAFRCPR--------SFMDQPLAE-HFSP-FRV--QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp TCSEEECTT--------CEECSCCCS-CCCC-BCC--CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred cceEEEcCC--------ccccccchh-hccC-CCC--CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 566677776 666554443 4455 666 77777766665322455566666777777666 33445556
Q ss_pred CCCCCCCEEEccCc-ccce--------ecCccccccCCCc-C-----------CCC-ccccceeccCCcCCCCCCCCCCC
Q 038586 150 PEYPTLFDVEGYMA-SLVQ--------ILEKDQHDEGSQN-G-----------QQG-AEAEAVCIQHNQANDIPCSSNNN 207 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N-~l~g--------~lp~~~~L~l~~~-~-----------~l~-~~l~~l~l~~N~l~~i~~~~~~~ 207 (353)
+++++|++|++++| .+++ .+|.+++|+++++ . .+. . ++++++++|.+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-L~~L~l~~~~~---------- 207 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET-ITQLNLSGYRK---------- 207 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT-CCEEECCSCGG----------
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC-CCEEEeCCCcc----------
Confidence 66666777777666 3442 2344455555444 1 122 3 66666766610
Q ss_pred cccccee-eeCCcchhccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCCCccceeecCC-CCC-ch---hhcCC
Q 038586 208 VQTVEFE-GEMEHSLSEVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ-QND-PI---ELLCL 280 (353)
Q Consensus 208 l~~~~l~-g~~p~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~i-P~---~l~~l 280 (353)
.++ +.+|..+..+++|++|++++|. +++..+ ..++ .+++|++|++++ ..+ |. .+..+
T Consensus 208 ----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~--------~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 208 ----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFF--------QLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp ----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----GGGG--------GCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----HHHh--------CCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 122 3466777889999999999998 666666 6777 889999999988 233 33 47788
Q ss_pred CCCCEEEccCC
Q 038586 281 DNILEIVESEV 291 (353)
Q Consensus 281 ~~L~~L~Ls~N 291 (353)
++|++|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 99999999988
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-17 Score=161.59 Aligned_cols=158 Identities=11% Similarity=0.005 Sum_probs=103.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCC-------------CCCCCCCcccCCCCCCcEEe-ccC--------------
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTIN-------------FGGIPVPEFVGSLSKLSLNT-VDH-------------- 141 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-------------l~~~~~P~~~~~L~~L~~L~-Ls~-------------- 141 (353)
|.++ .+|++++++ ++| +.|++++|. +.+. .|..++.+++|+.|+ ++.
T Consensus 359 n~L~-~Lp~~i~~l-~~L--~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 359 EKST-VLQSELESC-KEL--QELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp HHHH-HHHHHHHHH-HHH--HHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hhHH-hhHHHHHHH-HHH--HHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence 6665 778888887 888 888876654 4554 566677777777776 332
Q ss_pred -CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcc
Q 038586 142 -QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHS 220 (353)
Q Consensus 142 -~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~ 220 (353)
...+|. ..|++|++++|.+++ +|. ++.+.. ++.|++++| .++ .+|..
T Consensus 434 ~i~~l~~-----~~L~~L~Ls~n~l~~-lp~--------~~~l~~-L~~L~Ls~N----------------~l~-~lp~~ 481 (567)
T 1dce_A 434 SVLKMEY-----ADVRVLHLAHKDLTV-LCH--------LEQLLL-VTHLDLSHN----------------RLR-ALPPA 481 (567)
T ss_dssp HHHHHHH-----TTCSEEECTTSCCSS-CCC--------GGGGTT-CCEEECCSS----------------CCC-CCCGG
T ss_pred cccccCc-----cCceEEEecCCCCCC-CcC--------cccccc-CcEeecCcc----------------ccc-ccchh
Confidence 111121 146777777777764 442 334445 677777777 555 56777
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCC--chhhcCCCCCCEEEccCCCCCC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND--PIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i--P~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
++.+++|++|+|++|+|++ +| .++ .+++|+.|++++ ..+ |..+..+++|+.|+|++|.+..
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-----~l~--------~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-----GVA--------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-----GGT--------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-----ccC--------CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7777777777777777775 44 456 677777777777 333 6777777777777777777744
Q ss_pred CCc
Q 038586 296 LPD 298 (353)
Q Consensus 296 iP~ 298 (353)
+|+
T Consensus 548 ~~~ 550 (567)
T 1dce_A 548 EEG 550 (567)
T ss_dssp SSS
T ss_pred Ccc
Confidence 444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=121.33 Aligned_cols=137 Identities=10% Similarity=0.108 Sum_probs=73.9
Q ss_pred ccccccEEEeecCCCC-CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFG-GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~-~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
++| ++|++++|.++ +. +|..+..+++|++|++++ ...+ ..++.+++|++|++++|.+++.+|.. ..
T Consensus 24 ~~L--~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~ 92 (168)
T 2ell_A 24 AAV--RELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-------AE 92 (168)
T ss_dssp TSC--SEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-------HH
T ss_pred ccC--CEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-------Hh
Confidence 456 66666666666 33 566556666666666665 3333 45666666666666666665444433 22
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeee-CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCC
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE-MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.+.. ++++++++| .+++. .+..+..+++|++|++++|++++..+ . .
T Consensus 93 ~l~~-L~~L~Ls~N----------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~-~----------- 139 (168)
T 2ell_A 93 KLPN-LTHLNLSGN----------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----Y-R----------- 139 (168)
T ss_dssp HCTT-CCEEECBSS----------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----H-H-----------
T ss_pred hCCC-CCEEeccCC----------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----H-H-----------
Confidence 2333 444444444 22221 11344455555555555555543211 0 0
Q ss_pred CccceeecCCCCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 261 AVEEEALLAQQNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 261 ~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
...+..+++|++|++++|.+..+|+
T Consensus 140 -------------~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 140 -------------ESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp -------------HHHHTTCSSCCEETTEETTSCBCCS
T ss_pred -------------HHHHHhCccCcEecCCCCChhhccc
Confidence 0145667778888888887777766
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-14 Score=119.89 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=82.6
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC--CCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS--VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~--l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
+++++++|.++. +|..+.. +|++|++++ ...+|+. ++++++|++|++++|++++..|.. +..+..
T Consensus 11 ~~l~~s~~~l~~--ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------FEGASH 79 (192)
T ss_dssp TEEECTTSCCSS--CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-------TTTCTT
T ss_pred CEEEcCCCCcCc--CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-------cCCccc
Confidence 788999999976 7876654 888888888 6666653 788888888888888888777766 666777
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
++++++++| ++++..|..|..+++|++|++++|++++..|
T Consensus 80 -L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 80 -IQELQLGEN----------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -CCEEECCSC----------------CCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred -CCEEECCCC----------------cCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 788888888 7777667777788888888888888877666
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=150.42 Aligned_cols=156 Identities=10% Similarity=0.000 Sum_probs=101.5
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-------CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-------QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-------~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
+++ +.|+|.+|.+.. .|..+.....|..+.+.. ....|..+..+++|+.|+|++|.+. .+|..
T Consensus 173 ~~~--~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~----- 242 (727)
T 4b8c_D 173 PLT--PKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN----- 242 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-----
T ss_pred Ccc--ceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChh-----
Confidence 456 888999999887 566665556666665544 2344677899999999999999998 77765
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNK 257 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~ 257 (353)
...+.. +++|+|++| .++ .+|.+|+++++|++|+|++|+|+ .+| ..++
T Consensus 243 --~~~l~~-L~~L~Ls~N----------------~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp----~~~~------- 290 (727)
T 4b8c_D 243 --IFKYDF-LTRLYLNGN----------------SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP----AELG------- 290 (727)
T ss_dssp --GGGCCS-CSCCBCTTS----------------CCS-CCCGGGGGGTTCCEEECTTSCCS-SCC----SSGG-------
T ss_pred --hcCCCC-CCEEEeeCC----------------cCc-ccChhhhCCCCCCEEeCcCCcCC-ccC----hhhc-------
Confidence 456666 999999999 777 78999999999999999999998 678 7888
Q ss_pred cCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccC
Q 038586 258 QQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVR 305 (353)
Q Consensus 258 ~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l 305 (353)
.+++|+.|+|++ +.+|..++.+++|++|+|++|.| +.+|. .+..+
T Consensus 291 -~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~ 339 (727)
T 4b8c_D 291 -SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK--ILTEK 339 (727)
T ss_dssp -GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH--HHHHH
T ss_pred -CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH--HHhhc
Confidence 999999999998 88999999999999999999999 77777 55444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-16 Score=147.19 Aligned_cols=189 Identities=15% Similarity=0.128 Sum_probs=131.0
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHH-------HHhhccccccEEEeecCCCCC----CCCCcccCCCCCCcEEecc
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSAL-------LLCLNCMIYDIWTLVTINFGG----IPVPEFVGSLSKLSLNTVD 140 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l-------~~L~~~L~~~~L~Ls~N~l~~----~~~P~~~~~L~~L~~L~Ls 140 (353)
.+++.|+|+++.. +.+.|.+|..+ ..+ ++| ++|+|++|.+++ . +|..+..+++|++|+|+
T Consensus 60 ~~L~~L~Ls~~~~-----~~l~~~~~~~~~~l~~~l~~~-~~L--~~L~Ls~n~l~~~~~~~-l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 60 KDLEIAEFSDIFT-----GRVKDEIPEALRLLLQALLKC-PKL--HTVRLSDNAFGPTAQEP-LIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp TTCCEEECCSCCT-----TSCGGGSHHHHHHHHHHHTTC-TTC--CEEECCSCCCCTTTHHH-HHHHHHHCTTCCEEECC
T ss_pred CCccEEeCccccc-----CccccchhHHHHHHHHHHhhC-Ccc--cEEECCCCcCCHHHHHH-HHHHHHhCCCCCEEECc
Confidence 3677777777322 34556666544 466 777 777888777776 3 56667777777777777
Q ss_pred C--CC-----CCCCCCCCC---------CCCCEEEccCcccc-e----------ecCccccccCCCcCC-----------
Q 038586 141 H--QG-----EIIHSVPEY---------PTLFDVEGYMASLV-Q----------ILEKDQHDEGSQNGQ----------- 182 (353)
Q Consensus 141 ~--~~-----~lP~~l~~L---------~~L~~L~Ls~N~l~-g----------~lp~~~~L~l~~~~~----------- 182 (353)
+ .+ .++..+..+ ++|++|++++|++. + ..+.+++|+++++..
T Consensus 131 ~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 7 21 122223333 67777777777765 2 234567777776543
Q ss_pred ----CCccccceeccCCcCCCCCCCCCCCcccccee----eeCCcchhccCCCCEEEcccCcCccc----CCCCCccccc
Q 038586 183 ----QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE----GEMEHSLSEVYDIFDVERYSSSLDQI----LESERTEDHG 250 (353)
Q Consensus 183 ----l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~----g~~p~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~ 250 (353)
+.. ++.|++++| .++ +.+|..+..+++|++|+|++|++++. +| ..+.
T Consensus 211 ~l~~~~~-L~~L~Ls~n----------------~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~----~~l~ 269 (386)
T 2ca6_A 211 GLAYCQE-LKVLDLQDN----------------TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV----DAFS 269 (386)
T ss_dssp TGGGCTT-CCEEECCSS----------------CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH----HHHH
T ss_pred HhhcCCC-ccEEECcCC----------------CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH----HHHh
Confidence 234 788899999 665 56788899999999999999999765 34 3332
Q ss_pred hhhhhcccCCCccceeecCC---C-----CCchhh-cCCCCCCEEEccCCCCCCC
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---Q-----NDPIEL-LCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~-----~iP~~l-~~l~~L~~L~Ls~N~l~~i 296 (353)
...+++|+.|++++ + .+|..+ .++++|++|++++|.++..
T Consensus 270 ------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 ------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp ------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 00489999999999 2 267676 5689999999999999433
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=117.87 Aligned_cols=132 Identities=9% Similarity=0.096 Sum_probs=100.9
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEec
Q 038586 60 CKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTV 139 (353)
Q Consensus 60 C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~L 139 (353)
|.|.++.|+. ++++ .+|..+ . ++| ++|++++|.+++. .+..+..+++|++|++
T Consensus 7 C~~~~l~~~~--------------------~~l~-~~p~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 59 (177)
T 2o6r_A 7 CSGTEIRCNS--------------------KGLT-SVPTGI--P-SSA--TRLELESNKLQSL-PHGVFDKLTQLTKLSL 59 (177)
T ss_dssp EETTEEECCS--------------------SCCS-SCCTTC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEEC
T ss_pred eCCCEEEecC--------------------CCCc-cCCCCC--C-CCC--cEEEeCCCcccEe-CHHHhcCcccccEEEC
Confidence 6788888753 4554 455432 3 678 9999999999985 5556789999999999
Q ss_pred cC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeee
Q 038586 140 DH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE 216 (353)
Q Consensus 140 s~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~ 216 (353)
++ ...+|+. ++.+++|++|++++|++++..+.. +..+.. ++++++++| ++++.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~l~~-L~~L~l~~N----------------~l~~~ 115 (177)
T 2o6r_A 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV-------FDKLTQ-LKELALDTN----------------QLKSV 115 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCSCC
T ss_pred CCCcceEeChhHccCCCccCEEECCCCCccccCHHH-------hhCCcc-cCEEECcCC----------------cceEe
Confidence 98 5666654 688999999999999998665555 566667 889999999 66644
Q ss_pred CCcchhccCCCCEEEcccCcCcccCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
.+..+..+++|++|++++|++.+..|
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 116 PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhcCCcccCEEEecCCCeeccCc
Confidence 44556788999999999999887554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-14 Score=116.99 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred ccccccEEEeecCCCC-CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFG-GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~-~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
++| ++|++++|.++ +. +|..+..+++|++|++++ ...+ ..++++++|++|++++|.+++.+|.. ..
T Consensus 17 ~~l--~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-------~~ 85 (149)
T 2je0_A 17 SDV--KELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-------AE 85 (149)
T ss_dssp GGC--SEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-------HH
T ss_pred ccC--eEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-------hh
Confidence 677 99999999998 55 888888999999999988 4445 67888999999999999988767766 55
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeee-CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCC
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE-MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.+.. ++++++++| .+++. .|..++.+++|++|++++|++++..+ .....++ .+
T Consensus 86 ~l~~-L~~L~ls~N----------------~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~--------~l 139 (149)
T 2je0_A 86 KCPN-LTHLNLSGN----------------KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFK--------LL 139 (149)
T ss_dssp HCTT-CCEEECTTS----------------CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHH--------HC
T ss_pred hCCC-CCEEECCCC----------------cCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHH--------HC
Confidence 5666 888888888 55542 34678888889999999888876432 0001344 56
Q ss_pred CccceeecC
Q 038586 261 AVEEEALLA 269 (353)
Q Consensus 261 ~~L~~L~L~ 269 (353)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 666666654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=130.18 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=144.3
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC---CCCCCC-CCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH---QGEIIH-SVP 150 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~---~~~lP~-~l~ 150 (353)
.++.++ ++++ .+|..+ . +++ ++|+|++|+|+. +|+ .|.++++|++|+|++ .+.+|. .|.
T Consensus 13 ~v~C~~--------~~Lt-~iP~~l--~-~~l--~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 13 VFLCQE--------SKVT-EIPSDL--P-RNA--IELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp EEEEES--------TTCC-SCCTTC--C-TTC--SEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred EEEecC--------CCCC-ccCcCc--C-CCC--CEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 356677 7887 788755 3 678 999999999998 565 689999999999998 466765 468
Q ss_pred CCCCCCE-EEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 151 EYPTLFD-VEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 151 ~L~~L~~-L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
++++++. +.+++|++++..|.. +..+.. ++++++++| .+++..+..+....++..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~-------f~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEA-------FQNLPN-LQYLLISNT----------------GIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTS-------BCCCTT-CCEEEEEEE----------------CCSSCCCCTTCCBSSCEE
T ss_pred cchhhhhhhcccCCcccccCchh-------hhhccc-ccccccccc----------------ccccCCchhhcccchhhh
Confidence 8988775 667788998776777 777888 999999999 554444445566677889
Q ss_pred EEccc-CcCcccCCCCCccccchhhhhcccCC-CccceeecCC---CCCchhhcCCCCCCEEEccC-CCCCCCCcccccc
Q 038586 230 VERYS-SSLDQILESERTEDHGDAAIQNKQQE-AVEEEALLAQ---QNDPIELLCLDNILEIVESE-VEIDSLPDRLVFD 303 (353)
Q Consensus 230 L~Ls~-N~l~g~~p~~~~~~~~~~~~~~~~~l-~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~-N~l~~iP~~~~~~ 303 (353)
+++.+ +++....+ ..+. .+ ..++.|++++ ..+|.......+|+++++++ |.++.||+. .|.
T Consensus 133 l~l~~~~~i~~l~~----~~f~--------~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~ 199 (350)
T 4ay9_X 133 LDIQDNINIHTIER----NSFV--------GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFH 199 (350)
T ss_dssp EEEESCTTCCEECT----TSST--------TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTT
T ss_pred hhhccccccccccc----cchh--------hcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH-Hhc
Confidence 99976 45655444 4444 44 4688999998 66787777778999999985 666999873 689
Q ss_pred cCcccchhccccC
Q 038586 304 VREFLSELDQIAE 316 (353)
Q Consensus 304 ~l~~L~~Ld~~~~ 316 (353)
.+++|+.||...+
T Consensus 200 ~l~~L~~LdLs~N 212 (350)
T 4ay9_X 200 GASGPVILDISRT 212 (350)
T ss_dssp TEECCSEEECTTS
T ss_pred cCcccchhhcCCC
Confidence 9999999986543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=126.49 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=128.2
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
.+ .++ +.+++++|.+++ ++ .+..+++|++|++++ ...+| .+..+++|++|++++|++++..+
T Consensus 17 ~l-~~l--~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--------- 80 (263)
T 1xeu_A 17 GL-ANA--VKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--------- 80 (263)
T ss_dssp HH-HHH--HHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---------
T ss_pred HH-HHH--HHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---------
Confidence 34 566 888999999988 55 678999999999999 67777 68899999999999999985433
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ 259 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 259 (353)
+..+.. ++.+++++|++++++ . +.. ++|++|++++|++++ ++ .++ .
T Consensus 81 l~~l~~-L~~L~L~~N~l~~l~-----------------~-~~~-~~L~~L~L~~N~l~~-~~-----~l~--------~ 126 (263)
T 1xeu_A 81 LKDLTK-LEELSVNRNRLKNLN-----------------G-IPS-ACLSRLFLDNNELRD-TD-----SLI--------H 126 (263)
T ss_dssp GTTCSS-CCEEECCSSCCSCCT-----------------T-CCC-SSCCEEECCSSCCSB-SG-----GGT--------T
T ss_pred hccCCC-CCEEECCCCccCCcC-----------------c-ccc-CcccEEEccCCccCC-Ch-----hhc--------C
Confidence 344556 899999999554443 1 122 789999999999986 34 467 8
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++|+.|++++ ..+| .+..+++|++|++++|++..+ + .+..++.|+.|+..
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G--GLTRLKKVNWIDLT 180 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T--TSTTCCCCCEEEEE
T ss_pred cccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H--HhccCCCCCEEeCC
Confidence 99999999999 5555 688899999999999999666 4 58888899888754
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-14 Score=117.61 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~ 147 (353)
.+++.|++++ |.++ |.+|..+..+ ++| ++|++++|.+++ + ..+..+++|++|++++ . +.+|.
T Consensus 24 ~~L~~L~l~~--------n~l~~~~i~~~~~~l-~~L--~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDN--------CKSNDGKIEGLTAEF-VNL--EFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TSCSEEECCS--------CBCBTTBCSSCCGGG-GGC--CEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred ccCCEEECCC--------CCCChhhHHHHHHhC-CCC--CEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHH
Confidence 4799999999 8887 8899888899 999 999999999998 5 7789999999999999 3 34777
Q ss_pred CCCCCCCCCEEEccCcccceec-CccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCC---cchhc
Q 038586 148 SVPEYPTLFDVEGYMASLVQIL-EKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEME---HSLSE 223 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~l-p~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p---~~l~~ 223 (353)
.++++++|++|++++|.+++.- +.. +..+.. ++.+++++| .+++..+ ..+..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~-------l~~l~~-L~~L~l~~N----------------~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEP-------LKKLEC-LKSLDLFNC----------------EVTNLNDYRESVFKL 145 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGG-------GSSCSC-CCEEECCSS----------------GGGTSTTHHHHHHTT
T ss_pred HHhhCCCCCEEeccCCccCcchhHHH-------HhcCCC-CCEEEeeCC----------------cCcchHHHHHHHHHh
Confidence 7777999999999999998521 133 556667 899999999 6664433 47889
Q ss_pred cCCCCEEEcccCcCcc
Q 038586 224 VYDIFDVERYSSSLDQ 239 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g 239 (353)
+++|++|++++|.+..
T Consensus 146 l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 146 LPQLTYLDGYDREDQE 161 (168)
T ss_dssp CSSCCEETTEETTSCB
T ss_pred CccCcEecCCCCChhh
Confidence 9999999999999865
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-15 Score=146.67 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCCccceeecCCCCC----chhhc----C-CCCCCEEEccCCCCC-----CCCcccccccCcccchhccccCC
Q 038586 259 QEAVEEEALLAQQND----PIELL----C-LDNILEIVESEVEID-----SLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 259 ~l~~L~~L~L~~~~i----P~~l~----~-l~~L~~L~Ls~N~l~-----~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
.+++|++|++++..+ +..+. . .++|++|++++|.++ .+|. .+..++.|++||...+.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--HHHhCCCccEEECCCCC
Confidence 557777777776322 22222 1 567777777777774 5666 66667777777765443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-14 Score=141.97 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCCccccccCCccc----ccHHHHHhhccccccEEEeecCCCCCCCCCcccC-----CCCCCcEEeccC--
Q 038586 73 HFKVLNLRSSNDENARRKILKGT----ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-----SLSKLSLNTVDH-- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~----lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-----~L~~L~~L~Ls~-- 141 (353)
+++.|++++ |.+++. ++..+..+ ++| ++|++++|.++.. .+..+. ..++|++|++++
T Consensus 143 ~L~~L~L~~--------n~l~~~~~~~l~~~l~~~-~~L--~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 143 RLEKLQLEY--------CSLSAASCEPLASVLRAK-PDF--KELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp CCCEEECTT--------SCCBGGGHHHHHHHHHHC-TTC--CEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred cceEEECCC--------CCCCHHHHHHHHHHHhhC-CCC--CEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCCC
Confidence 578888888 666652 35556666 777 7777777776553 232222 245677777766
Q ss_pred CCC-----CCCCCCCCCCCCEEEccCcccce------------ecCccccccCCCcCCC--------------Cccccce
Q 038586 142 QGE-----IIHSVPEYPTLFDVEGYMASLVQ------------ILEKDQHDEGSQNGQQ--------------GAEAEAV 190 (353)
Q Consensus 142 ~~~-----lP~~l~~L~~L~~L~Ls~N~l~g------------~lp~~~~L~l~~~~~l--------------~~~l~~l 190 (353)
.+. ++..+..+++|++|++++|.+.+ ..+.+++|+++++... .. ++++
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L 289 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKEL 289 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceE
Confidence 222 34455566667777777766543 1355666666655322 22 5666
Q ss_pred eccCCcCCCCCC--------CCCCCcccc-----ceeee----CCcchhccCCCCEEEcccCcCcccCCCCCccccchhh
Q 038586 191 CIQHNQANDIPC--------SSNNNVQTV-----EFEGE----MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAA 253 (353)
Q Consensus 191 ~l~~N~l~~i~~--------~~~~~l~~~-----~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~ 253 (353)
++++|++.+... .....++.+ .+++. ++..+..+++|++|++++|++++..+ ..+...
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~----~~l~~~- 364 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV----RELCQG- 364 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH----HHHHHH-
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH----HHHHHH-
Confidence 666665542110 000122222 44432 56667788999999999999876443 333300
Q ss_pred hhcccCCCccceeecCC---C-----CCchhhcCCCCCCEEEccCCCCC
Q 038586 254 IQNKQQEAVEEEALLAQ---Q-----NDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 254 ~~~~~~l~~L~~L~L~~---~-----~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
+ ....++|+.|++++ + .+|..+..+++|++|++++|+++
T Consensus 365 l--~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 365 L--GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp H--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred H--cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 0 01267999999999 2 56777888999999999999994
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=115.82 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=93.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l~ 166 (353)
++++ .+|..+ . +.| ++|++++|.++. +|..|..+++|++|+|++ ...++ ..|.++++|++|+|++|+++
T Consensus 20 ~~l~-~ip~~~--~-~~l--~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 20 KGLK-VLPKGI--P-RDV--TELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp SCCS-SCCSCC--C-TTC--CEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCC-cCCCCC--C-CCC--CEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6776 677543 2 678 999999999986 788899999999999998 55554 56889999999999999998
Q ss_pred eecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 167 QILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 167 g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
+..|.. +..+.. ++.|++++| .+++..+..|..+++|++|++++|++..
T Consensus 92 ~i~~~~-------f~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRT-------FDGLKS-LRLLSLHGN----------------DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTT-------TTTCTT-CCEEECCSS----------------CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHH-------hCCCCC-CCEEECCCC----------------CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 766666 666777 888888888 6664445567788889999999988754
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-13 Score=114.19 Aligned_cols=124 Identities=6% Similarity=0.018 Sum_probs=85.1
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
+++++++|.++. +|..+. ++|++|++++ ...+|..+.++++|++|++++|.+++..+.. +..+.. +
T Consensus 13 ~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-------f~~l~~-L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-------FSNMTQ-L 80 (193)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTT-------TTTCTT-C
T ss_pred CEEEcCCCCCCc--CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhH-------ccCCCC-C
Confidence 678888888886 676653 5788888887 6677777777888888888888777554444 555555 6
Q ss_pred cceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceee
Q 038586 188 EAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
++|++++| ++++..|..|..+++|++|+|++|++++..+ .
T Consensus 81 ~~L~Ls~N----------------~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~----~-------------------- 120 (193)
T 2wfh_A 81 LTLILSYN----------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE----G-------------------- 120 (193)
T ss_dssp CEEECCSS----------------CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT----T--------------------
T ss_pred CEEECCCC----------------ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh----h--------------------
Confidence 66666666 5554445556666666666666666654333 1
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCCC
Q 038586 268 LAQQNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 268 L~~~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
.+..+++|+.|++++|.+
T Consensus 121 --------~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 121 --------AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp --------TTTTCTTCCEEECCSSCE
T ss_pred --------hhhcCccccEEEeCCCCe
Confidence 345567888888888888
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-14 Score=114.86 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~ 147 (353)
.+++.|++++ +.++ |.+|..+..+ ++| ++|++++|.+++ + ..++.+++|++|++++ . +.+|.
T Consensus 17 ~~l~~L~l~~--------n~l~~~~~~~~~~~l-~~L--~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDN--------SRSNEGKLEGLTDEF-EEL--EFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTT--------CBCBTTBCCSCCTTC-TTC--CEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccC--------CcCChhHHHHHHhhc-CCC--cEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHH
Confidence 4789999999 8998 8899988899 999 999999999998 5 7789999999999999 4 44787
Q ss_pred CCCCCCCCCEEEccCccccee-cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCC---cchhc
Q 038586 148 SVPEYPTLFDVEGYMASLVQI-LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEME---HSLSE 223 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~-lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p---~~l~~ 223 (353)
.++.+++|++|++++|.+++. .+.. +..+.. ++++++++| .+++..+ ..+..
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~-------~~~l~~-L~~L~l~~N----------------~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEP-------LKKLEN-LKSLDLFNC----------------EVTNLNDYRENVFKL 138 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGG-------GGGCTT-CCEEECTTC----------------GGGGSTTHHHHHHHH
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHH-------HhhCCC-CCEEeCcCC----------------cccchHHHHHHHHHH
Confidence 777899999999999999862 3344 566677 899999999 6665544 57889
Q ss_pred cCCCCEEEccc
Q 038586 224 VYDIFDVERYS 234 (353)
Q Consensus 224 l~~L~~L~Ls~ 234 (353)
+++|++|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 99999999874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=131.49 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=81.0
Q ss_pred CcccccHHHHHhhccccccEEE-eecCCCCCCCCCc------ccCC--CCCCcEEeccC--CCCCCCCCCCCCCCCEEEc
Q 038586 92 LKGTISSALLLCLNCMIYDIWT-LVTINFGGIPVPE------FVGS--LSKLSLNTVDH--QGEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 92 l~g~lp~~l~~L~~~L~~~~L~-Ls~N~l~~~~~P~------~~~~--L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~L 160 (353)
..|.+|..+..+ ++| +.|+ ++.|.+.. ++. .+.. ...|++|+|++ ...+|. ++++++|++|+|
T Consensus 397 ~~~~~~~~l~~l-~~L--~~L~~l~~n~~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 397 PLLYEKETLQYF-STL--KAVDPMRAAYLDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDL 470 (567)
T ss_dssp TGGGHHHHHHHH-HHH--HHHCGGGHHHHHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEEC
T ss_pred cccCCHHHHHHH-Hhc--ccCcchhhcccch--hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeec
Confidence 556677666666 666 5555 34332221 111 0000 01356666666 444554 666666666666
Q ss_pred cCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCccc
Q 038586 161 YMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 161 s~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
++|.++ .+|.. ++.+.. ++.|++++| .+++ +| .++.+++|++|+|++|+|++.
T Consensus 471 s~N~l~-~lp~~-------~~~l~~-L~~L~Ls~N----------------~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 471 SHNRLR-ALPPA-------LAALRC-LEVLQASDN----------------ALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp CSSCCC-CCCGG-------GGGCTT-CCEEECCSS----------------CCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred Cccccc-ccchh-------hhcCCC-CCEEECCCC----------------CCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 666665 55554 555555 666666666 4443 44 556666666666666666655
Q ss_pred C-CCCCccccchhhhhcccCCCccceeecCC---CCCchh----hcCCCCCCEEEc
Q 038586 241 L-ESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE----LLCLDNILEIVE 288 (353)
Q Consensus 241 ~-p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~----l~~l~~L~~L~L 288 (353)
. | ..++ .+++|+.|++++ ..+|+. +..+++|+.|++
T Consensus 524 ~~p----~~l~--------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAI----QPLV--------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STT----GGGG--------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc----HHHh--------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 5 5555 566666666665 222221 233566776653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-15 Score=130.20 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccH------HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISS------ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE 144 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~------~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~ 144 (353)
+++.++++. +.+.|.+|+ .+..+ ++| ++|++++|.+++ +| .+..+++|++|++++ ...
T Consensus 19 ~l~~l~l~~--------~~l~~~~~~l~~l~~~~~~l-~~L--~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 19 SVVATEAEK--------VELHGMIPPIEKMDATLSTL-KAC--KHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp CCCCTTCSE--------EECCBCCTTCCCCHHHHHHT-TTC--SEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECS
T ss_pred cccCcchhe--------eEeccccCcHhhhhHHHhcC-CCC--CEEECCCCCCcc--cc-ccccCCCCCEEECCCCCccc
Confidence 455555555 566666554 88888 999 999999999988 67 788889999999988 667
Q ss_pred CCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeC-Ccchhc
Q 038586 145 IIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEM-EHSLSE 223 (353)
Q Consensus 145 lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~-p~~l~~ 223 (353)
+|..+..+++|++|++++|++++ +|. +..+.. ++.+++++| ++++.. +..+..
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~-l~~--------~~~l~~-L~~L~l~~N----------------~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIAS-LSG--------IEKLVN-LRVLYMSNN----------------KITNWGEIDKLAA 138 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCC-HHH--------HHHHHH-SSEEEESEE----------------ECCCHHHHHHHTT
T ss_pred ccchhhcCCcCCEEECcCCcCCc-CCc--------cccCCC-CCEEECCCC----------------cCCchhHHHHHhc
Confidence 88777777889999999988874 442 334445 777888888 444311 146777
Q ss_pred cCCCCEEEcccCcCcccCC
Q 038586 224 VYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g~~p 242 (353)
+++|++|++++|++.+..|
T Consensus 139 l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp TTTCSEEEECSCHHHHHHH
T ss_pred CCCCCEEEecCCccccccc
Confidence 8888888888888876655
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=104.18 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=79.4
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.+++++|.++. +|..+. ++|++|++++ ...+|+ .++++++|++|++++|++++..+.. +..+..
T Consensus 10 ~~l~~~~~~l~~--~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~- 77 (177)
T 2o6r_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-------FDKLTK- 77 (177)
T ss_dssp TEEECCSSCCSS--CCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------TTTCTT-
T ss_pred CEEEecCCCCcc--CCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH-------ccCCCc-
Confidence 778888888887 665443 6778888877 445554 3567777777777777776433333 334444
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
++++++++| ++++..+..+..+++|++|++++|++++..+
T Consensus 78 L~~L~l~~N----------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------------------ 117 (177)
T 2o6r_A 78 LTILYLHEN----------------KLQSLPNGVFDKLTQLKELALDTNQLKSVPD------------------------ 117 (177)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------------------
T ss_pred cCEEECCCC----------------CccccCHHHhhCCcccCEEECcCCcceEeCH------------------------
Confidence 555555555 4443333444555555555555555543222
Q ss_pred ecCCCCCchhhcCCCCCCEEEccCCCC-CCCC
Q 038586 267 LLAQQNDPIELLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 267 ~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
..+..+++|++|++++|.+ +..|
T Consensus 118 --------~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 118 --------GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------HHhcCCcccCEEEecCCCeeccCc
Confidence 1245578899999999999 5544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=109.12 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=29.2
Q ss_pred CCCccceeecCC---CCCch--hhcCCCCCCEEEccCCCCCCCCcccc----cccCcccchhccc
Q 038586 259 QEAVEEEALLAQ---QNDPI--ELLCLDNILEIVESEVEIDSLPDRLV----FDVREFLSELDQI 314 (353)
Q Consensus 259 ~l~~L~~L~L~~---~~iP~--~l~~l~~L~~L~Ls~N~l~~iP~~~~----~~~l~~L~~Ld~~ 314 (353)
.+++|+.|++++ +.+|. .+..+++|+.|++++|.+..+|. . +..++.|+.||..
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH--YRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT--HHHHHHHHCTTCSEETTE
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh--HHHHHHHHCCccceeCCC
Confidence 344444444444 33333 45556666666666666655555 3 5556666666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=105.22 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGS 178 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~ 178 (353)
..+ .+| ++|++++|.++. +|......++|++|++++ ...+ ..++.+++|++|++++|.+++..|..
T Consensus 16 ~~~-~~L--~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~------ 83 (176)
T 1a9n_A 16 TNA-VRD--RELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL------ 83 (176)
T ss_dssp ECT-TSC--EEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH------
T ss_pred CCc-CCc--eEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch------
Confidence 445 677 888888888875 554333333777777777 4444 45666777777777777766432222
Q ss_pred CcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCc--chhccCCCCEEEcccCcCc
Q 038586 179 QNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEH--SLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 179 ~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~--~l~~l~~L~~L~Ls~N~l~ 238 (353)
+..+.. ++++++++| .++ .+|. .+..+++|++|++++|++.
T Consensus 84 -~~~l~~-L~~L~L~~N----------------~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 84 -DQALPD-LTELILTNN----------------SLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -HHHCTT-CCEEECCSC----------------CCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -hhcCCC-CCEEECCCC----------------cCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 234444 556666666 332 2333 4555566666666666554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-14 Score=123.65 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=85.7
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCc------ccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCc
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPE------FVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEK 171 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~------~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~ 171 (353)
+... ..+ +.++++.+.+.+. +|. .+..+++|++|++++ ...+| .+.++++|++|++++|.++ .+|.
T Consensus 14 ~~~~-~~l--~~l~l~~~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 14 FEER-KSV--VATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp HHHT-TCC--CCTTCSEEECCBC-CTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred HHhc-ccc--cCcchheeEeccc-cCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccc
Confidence 5666 778 8888888888887 666 566666666666666 44455 5666666666666666655 3443
Q ss_pred cccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccch
Q 038586 172 DQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGD 251 (353)
Q Consensus 172 ~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 251 (353)
. ...+.. ++++++++| ++++ +| .+..+++|++|++++|++++
T Consensus 88 ~-------~~~~~~-L~~L~L~~N----------------~l~~-l~-~~~~l~~L~~L~l~~N~i~~------------ 129 (198)
T 1ds9_A 88 L-------DAVADT-LEELWISYN----------------QIAS-LS-GIEKLVNLRVLYMSNNKITN------------ 129 (198)
T ss_dssp H-------HHHHHH-CSEEEEEEE----------------ECCC-HH-HHHHHHHSSEEEESEEECCC------------
T ss_pred h-------hhcCCc-CCEEECcCC----------------cCCc-CC-ccccCCCCCEEECCCCcCCc------------
Confidence 3 222233 455555555 3332 22 34445555555555555432
Q ss_pred hhhhcccCCCccceeecCCCCCch--hhcCCCCCCEEEccCCCC-CCCCcc--------cccccCcccchhc
Q 038586 252 AAIQNKQQEAVEEEALLAQQNDPI--ELLCLDNILEIVESEVEI-DSLPDR--------LVFDVREFLSELD 312 (353)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~~~iP~--~l~~l~~L~~L~Ls~N~l-~~iP~~--------~~~~~l~~L~~Ld 312 (353)
+|. .+..+++|++|++++|.+ +.+|.. ..+..++.|+.||
T Consensus 130 ---------------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 130 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ---------------------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ---------------------hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 222 456677777777777777 443330 0255566666665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=101.14 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=49.0
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~ 151 (353)
+.+++++ +.++ .+|..+ . +.| ++|+|++|.+++. .|..|.++++|++|+|++ ...+|+. +.+
T Consensus 12 ~~l~~s~--------n~l~-~ip~~~--~-~~l--~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 12 TTVDCSG--------KSLA-SVPTGI--P-TTT--QVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TEEECTT--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEeCC--------CCcC-ccCccC--C-CCC--cEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 4677777 7776 466543 3 667 8888888888775 566666666666666666 4444443 355
Q ss_pred CCCCCEEEccCcccc
Q 038586 152 YPTLFDVEGYMASLV 166 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~ 166 (353)
+++|++|+|++|+++
T Consensus 77 l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 77 LTQLTQLSLNDNQLK 91 (170)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCccC
Confidence 666666666666554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=114.49 Aligned_cols=190 Identities=8% Similarity=0.022 Sum_probs=109.7
Q ss_pred HHHH-hhccccccEEEeecCCCCC------C------------CCC-cccCC--------CCCCcEEeccC-CCCCCC-C
Q 038586 99 ALLL-CLNCMIYDIWTLVTINFGG------I------------PVP-EFVGS--------LSKLSLNTVDH-QGEIIH-S 148 (353)
Q Consensus 99 ~l~~-L~~~L~~~~L~Ls~N~l~~------~------------~~P-~~~~~--------L~~L~~L~Ls~-~~~lP~-~ 148 (353)
.+.. + ++| ++|||++|.+.. . .+| ..|.+ +++|+.|+|.. ...|+. .
T Consensus 43 ~l~~~l-~~L--~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~a 119 (329)
T 3sb4_A 43 HLRDEF-PSL--KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAA 119 (329)
T ss_dssp HHHHSC-TTC--CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTT
T ss_pred HHHHhh-ccC--eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCccccchhHHH
Confidence 3444 5 779 999999999881 1 022 24667 99999999998 666765 5
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc----CCCCC---CC------------------
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ----ANDIP---CS------------------ 203 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~----l~~i~---~~------------------ 203 (353)
|.++++|+.+++++|.+...-+.. +..... +..+....+. ...+. ..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~a-------F~~~~~-l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEA-------LADSVT-AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTS-------SCTTTC-EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred hhcCcccceEEcCCCCccccchhh-------hcCCCc-eEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 889999999999999876322222 221111 1122111100 00000 00
Q ss_pred --------CCCCccccceeeeCCc----ch-hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 204 --------SNNNVQTVEFEGEMEH----SL-SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 204 --------~~~~l~~~~l~g~~p~----~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
...++..+.+.|.+-. .+ ..+++|+.+++++|+++...+ ..|. ++.+|+.+++.+
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~--------~~~~L~~l~l~~ 259 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFA--------QKKYLLKIKLPH 259 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTT--------TCTTCCEEECCT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhh--------CCCCCCEEECCc
Confidence 0011112222232211 11 126778888888777765444 5566 777777777776
Q ss_pred --CCCch-hhcCCCCCC-EEEccCCCCCCCCcccccccCcccchhcc
Q 038586 271 --QNDPI-ELLCLDNIL-EIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 271 --~~iP~-~l~~l~~L~-~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
..|+. .|.++++|+ .+++.+ .+..|++. .|..++.|+.++.
T Consensus 260 ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~-aF~~c~~L~~l~l 304 (329)
T 3sb4_A 260 NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG-AFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEECTTTTTTCTTCCEEEEECT-TCCEECTT-TTTTCTTEEEEEE
T ss_pred ccceehHHHhhCChhccEEEEEcc-cceEEchh-hhhCCccCCEEEe
Confidence 44443 466777777 777777 66666542 6777777777763
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=99.30 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=57.1
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~ 151 (353)
+.+++++ ++++ .+|..+ . ++| ++|+|++|.+++. .|..|.++++|++|+|++ ...+|.. +.+
T Consensus 15 ~~l~~~~--------n~l~-~iP~~~--~-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQN--------IRLA-SVPAGI--P-TDK--QRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCS--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCC--------CCCC-ccCCCc--C-CCC--cEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 5688888 7775 777654 3 778 9999999999886 577777777787777777 5556654 467
Q ss_pred CCCCCEEEccCcccc
Q 038586 152 YPTLFDVEGYMASLV 166 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~ 166 (353)
+++|++|+|++|+++
T Consensus 80 l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLK 94 (174)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cchhhEEECCCCccc
Confidence 777777777777665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-12 Score=130.66 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=34.7
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCC--CCCcEEeccC-CC----CCCCCCCCCCCCCEEEccCcccc
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSL--SKLSLNTVDH-QG----EIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L--~~L~~L~Ls~-~~----~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
.+ ++| ++|+|++|.+++. .+..+... ++|++|+|++ .+ .++....++++|++|++++|.++
T Consensus 110 ~~-~~L--~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 110 NL-RQL--KSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp HC-TTC--CEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred hC-CCC--CeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence 55 677 7777777766654 44444442 3377777765 21 12222235667777777777654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-10 Score=96.08 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=47.2
Q ss_pred ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEE
Q 038586 212 EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIV 287 (353)
Q Consensus 212 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~ 287 (353)
++++..|..|.++++|++|+|++|+|++..+ ..++ .+++|+.|++++ ..+|.. +..+++|++|+
T Consensus 44 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~--------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 44 QITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----GVFD--------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CccccCHHHhcCCcCCCEEECCCCCCCccCh----hHhC--------CcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4444445556666666666666666665444 3344 556666666665 344443 66788899999
Q ss_pred ccCCCCCCCCc
Q 038586 288 ESEVEIDSLPD 298 (353)
Q Consensus 288 Ls~N~l~~iP~ 298 (353)
|++|.+...|.
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999866665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-10 Score=93.86 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=29.9
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccCcccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~ 166 (353)
+++++++|.++. +|..+. ++|++|+|++ ...+ |..++++++|++|+|++|+++
T Consensus 12 ~~l~~s~n~l~~--ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 12 TTVDCSGKSLAS--VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CEEEeCCCCcCc--cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 666777777766 565442 5556666655 2233 444555555555555555555
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=107.25 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=68.5
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEe
Q 038586 60 CKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 60 C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
|.|.+|.|.+. |+++ .+|. +..+ ++| ++|+|++ |.|++. .|..|+++++|++|+
T Consensus 8 C~~~~v~~~~~-------------------n~l~-~ip~-l~~~-~~L--~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~ 62 (347)
T 2ifg_A 8 HGSSGLRCTRD-------------------GALD-SLHH-LPGA-ENL--TELYIENQQHLQHL-ELRDLRGLGELRNLT 62 (347)
T ss_dssp SSSSCEECCSS-------------------CCCT-TTTT-SCSC-SCC--SEEECCSCSSCCEE-CGGGSCSCCCCSEEE
T ss_pred ccCCEEEcCCC-------------------CCCC-ccCC-CCCC-CCe--eEEEccCCCCCCCc-ChhHhccccCCCEEE
Confidence 78888887531 2565 4777 7777 777 8888875 777774 445677788888888
Q ss_pred ccC--CC-CCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCC
Q 038586 139 VDH--QG-EIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAN 198 (353)
Q Consensus 139 Ls~--~~-~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~ 198 (353)
|++ .. ..|..|++|++|++|+|++|+|++..+.. +..+. ++.|++.+|.+.
T Consensus 63 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~~~--L~~l~l~~N~~~ 116 (347)
T 2ifg_A 63 IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-------VQGLS--LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-------TCSCC--CCEEECCSSCCC
T ss_pred CCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH-------cccCC--ceEEEeeCCCcc
Confidence 877 33 33445677888888888888877433333 22222 566666666443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-11 Score=121.79 Aligned_cols=192 Identities=9% Similarity=-0.071 Sum_probs=102.8
Q ss_pred ccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC------CCCCCCCCCCCCCCCEEEccCcccceec
Q 038586 96 ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH------QGEIIHSVPEYPTLFDVEGYMASLVQIL 169 (353)
Q Consensus 96 lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~------~~~lP~~l~~L~~L~~L~Ls~N~l~g~l 169 (353)
++..+.++ ++| ++|++++|.+.+ +|..+..+++|++|+++. .+..+..+..+++|+.|+++++. .+.+
T Consensus 212 l~~~~~~~-~~L--~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l 285 (592)
T 3ogk_B 212 LETIARNC-RSL--VSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM 285 (592)
T ss_dssp HHHHHHHC-TTC--CEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG
T ss_pred HHHHHhhC-CCC--cEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH
Confidence 33334445 555 555555555554 455555555566555553 12333445556666666665532 1233
Q ss_pred CccccccCCCcCCCCccccceeccCCcCCCCC----CCCCCCccccceee-----eCCcchhccCCCCEEEccc------
Q 038586 170 EKDQHDEGSQNGQQGAEAEAVCIQHNQANDIP----CSSNNNVQTVEFEG-----EMEHSLSEVYDIFDVERYS------ 234 (353)
Q Consensus 170 p~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~----~~~~~~l~~~~l~g-----~~p~~l~~l~~L~~L~Ls~------ 234 (353)
|.. ...+.. ++++++++|.+++.. .....+++.+.+.. .++.....+++|++|++++
T Consensus 286 ~~~-------~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 286 PIL-------FPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GGG-------GGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred HHH-------HhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence 332 233344 677777777543211 12334444444432 2333345678888888883
Q ss_pred -----CcCccc-CCCCCccccchhhhhcccCCCccceeecCCCCC----chhhcC-CCCCCEEEcc----CCCCCCCCcc
Q 038586 235 -----SSLDQI-LESERTEDHGDAAIQNKQQEAVEEEALLAQQND----PIELLC-LDNILEIVES----EVEIDSLPDR 299 (353)
Q Consensus 235 -----N~l~g~-~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i----P~~l~~-l~~L~~L~Ls----~N~l~~iP~~ 299 (353)
|.+++. ++ .... .+++|++|+++...+ +..++. +++|++|+++ .|.++..|..
T Consensus 358 ~~~~~~~~~~~~~~----~l~~--------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 358 MEDEEGLVSQRGLI----ALAQ--------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp TSSTTCCCCHHHHH----HHHH--------HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred cccccCccCHHHHH----HHHh--------hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 444321 11 1122 578889998855333 334444 8889999996 6677554321
Q ss_pred ----cccccCcccchhcc
Q 038586 300 ----LVFDVREFLSELDQ 313 (353)
Q Consensus 300 ----~~~~~l~~L~~Ld~ 313 (353)
..+..++.|+.|+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEE
Confidence 03566777887775
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=101.04 Aligned_cols=102 Identities=6% Similarity=-0.015 Sum_probs=83.9
Q ss_pred cEEEeecC-CCCCCCCCcccCCCCCCcEEecc--C-CCCCC-CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCC
Q 038586 110 DIWTLVTI-NFGGIPVPEFVGSLSKLSLNTVD--H-QGEII-HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQG 184 (353)
Q Consensus 110 ~~L~Ls~N-~l~~~~~P~~~~~L~~L~~L~Ls--~-~~~lP-~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~ 184 (353)
..++++++ +++. +|. +..+++|++|+|+ + ...+| ..|++|++|++|+|++|++++..|.. +..+.
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-------FHFTP 80 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-------GGSCS
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-------hcCCc
Confidence 45688988 8988 899 9999999999997 3 66666 56999999999999999999988887 78888
Q ss_pred ccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 185 AEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 185 ~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
. |+.|+|++| +|++..+..+..++ |++|+|.+|++..
T Consensus 81 ~-L~~L~l~~N----------------~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 R-LSRLNLSFN----------------ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp C-CCEEECCSS----------------CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred C-CCEEeCCCC----------------ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8 999999999 55543344455555 9999999999864
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-11 Score=120.55 Aligned_cols=52 Identities=13% Similarity=-0.061 Sum_probs=32.2
Q ss_pred CCCccceeecCCCCCc-----hhhcCCCCCCEEEccCCCC--CCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQQNDP-----IELLCLDNILEIVESEVEI--DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~~~iP-----~~l~~l~~L~~L~Ls~N~l--~~iP~~~~~~~l~~L~~Ld~ 313 (353)
.+++|++|++++..+. ..+..+++|++|++++| + ..++. ....++.|++|+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~--l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV--LASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH--HHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH--HHHhCCCCCEEEE
Confidence 5677888888773332 22456788888888877 4 23333 3344666777754
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-10 Score=106.11 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.4
Q ss_pred CcchhccCCCCEEEcccCcCccc----CCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCCCCCCE
Q 038586 218 EHSLSEVYDIFDVERYSSSLDQI----LESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCLDNILE 285 (353)
Q Consensus 218 p~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l~~L~~ 285 (353)
+..+...++|++|+|++|.++.. ++ ..+. ..++|+.|+|++..+ +..+...++|++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~----~~L~--------~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~ 243 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLA----AQLD--------RNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHH----HHGG--------GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHH----HHHh--------cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCE
Confidence 33445556666666666665421 11 2222 445666666666222 234555678888
Q ss_pred EEccCCCCCC
Q 038586 286 IVESEVEIDS 295 (353)
Q Consensus 286 L~Ls~N~l~~ 295 (353)
|+|++|.|+.
T Consensus 244 L~Ls~N~i~~ 253 (372)
T 3un9_A 244 LHLYFNELSS 253 (372)
T ss_dssp EECTTSSCCH
T ss_pred EeccCCCCCH
Confidence 8888888843
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-09 Score=109.17 Aligned_cols=205 Identities=8% Similarity=0.010 Sum_probs=108.5
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC---CCC--CCCCCCCCCCCCEEEccCcccceecCcccc
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH---QGE--IIHSVPEYPTLFDVEGYMASLVQILEKDQH 174 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~---~~~--lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~ 174 (353)
..+ ++| ++|+|++|.+++. .+..+. .+++|++|+|++ .+. ++..+.++++|++|++++|.+++.-+..
T Consensus 102 ~~~-~~L--~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-- 175 (594)
T 2p1m_B 102 SSY-TWL--EEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-- 175 (594)
T ss_dssp HHC-TTC--CEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG--
T ss_pred HhC-CCC--CeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH--
Confidence 355 778 8888888887765 455554 578888888876 111 3333446788888888888765422111
Q ss_pred ccCCC-cCCCCccccceeccCCcCCCCCC-------CCCCCccccce-----eeeCCcchhccCCCCEEEcccCc-----
Q 038586 175 DEGSQ-NGQQGAEAEAVCIQHNQANDIPC-------SSNNNVQTVEF-----EGEMEHSLSEVYDIFDVERYSSS----- 236 (353)
Q Consensus 175 L~l~~-~~~l~~~l~~l~l~~N~l~~i~~-------~~~~~l~~~~l-----~g~~p~~l~~l~~L~~L~Ls~N~----- 236 (353)
+.. ...... ++.+++++|. ..+.. ...+.++.+.+ .+.+|..+..+++|++|+++.+.
T Consensus 176 --l~~~~~~~~~-L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 176 --LSHFPDTYTS-LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp --GGGSCTTCCC-CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred --HHHHhhcCCc-CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 000 112223 5555555552 00100 00011111111 11144445555555555544332
Q ss_pred --CcccCCCCCccccchhhhhcccCCCcccee-ecCC---CCCchhhcCCCCCCEEEccCCCCC--CCCcccccccCccc
Q 038586 237 --LDQILESERTEDHGDAAIQNKQQEAVEEEA-LLAQ---QNDPIELLCLDNILEIVESEVEID--SLPDRLVFDVREFL 308 (353)
Q Consensus 237 --l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L-~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~--~iP~~~~~~~l~~L 308 (353)
+.+ ++ ..++ ++++|+.+ .+.. ..+|..+..+++|++|++++|.++ .++. .+..+++|
T Consensus 252 ~~~~~-l~----~~l~--------~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~--~~~~~~~L 316 (594)
T 2p1m_B 252 DVYSG-LS----VALS--------GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK--LLCQCPKL 316 (594)
T ss_dssp HHHHH-HH----HHHH--------TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH--HHTTCTTC
T ss_pred hhHHH-HH----HHHh--------cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH--HHhcCCCc
Confidence 111 11 1233 56667766 3333 445655667899999999999983 2333 45677888
Q ss_pred chhccccCCC-------cccccccccccc
Q 038586 309 SELDQIAEPR-------DEECGKLQAVAW 330 (353)
Q Consensus 309 ~~Ld~~~~~~-------~~~c~~l~~~~~ 330 (353)
+.|+...... ...|.+++.+..
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 8887643311 123666666643
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.2e-08 Score=89.37 Aligned_cols=174 Identities=9% Similarity=-0.007 Sum_probs=125.1
Q ss_pred hhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccce---ecC------
Q 038586 103 CLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQ---ILE------ 170 (353)
Q Consensus 103 L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g---~lp------ 170 (353)
+ ++| +.++|.+ .++.. -+..|.++++|+.++++. ...+++ .|..+.++.++....+.... .+.
T Consensus 100 ~-~~L--~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 K-QTL--EKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp C-TTC--CC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred c-CCC--cEEECCc-cccch-hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 8 999 9999999 88874 455699999999999988 445554 56777777777765532100 000
Q ss_pred ----------------------------ccccccCCCcC----------CCCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 171 ----------------------------KDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 171 ----------------------------~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
..+.+.+.+.- .... ++.+++++| +
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~-L~~l~L~~n----------------~ 237 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPN-LVSLDISKT----------------N 237 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTT-CCEEECTTB----------------C
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCC-CeEEECCCC----------------C
Confidence 00111111100 1344 888999998 5
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccc-eeecCC--CCCc-hhhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE-EALLAQ--QNDP-IELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~-~L~L~~--~~iP-~~l~~l~~L~~L~L 288 (353)
++..-+..|.++++|+.+++.+| +...-+ ..|. ++.+|+ .+++.. ..|+ ..|.++++|+.+++
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~----~aF~--------~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ----RVFS--------NCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECT----TTTT--------TCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEE
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehH----HHhh--------CChhccEEEEEcccceEEchhhhhCCccCCEEEe
Confidence 65444567999999999999998 765555 6677 899999 999987 4554 56889999999999
Q ss_pred cCCCCCCCCcccccccCcccchhc
Q 038586 289 SEVEIDSLPDRLVFDVREFLSELD 312 (353)
Q Consensus 289 s~N~l~~iP~~~~~~~l~~L~~Ld 312 (353)
++|++..|++. .|.++++|+.+.
T Consensus 305 ~~n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTT-TTCTTCCCCEEE
T ss_pred CCCccCccchh-hhcCCcchhhhc
Confidence 99999888774 799999888764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-07 Score=87.15 Aligned_cols=186 Identities=10% Similarity=0.034 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCccccccCCccccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l 149 (353)
.++.+.+.. .+. .|+ .+|..+ .+| +.++++.|.++. +|...-..++|+.+.+.. ...|+. .|
T Consensus 158 ~L~~i~lp~---------~l~-~I~~~aF~~c-~~L--~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~l~~I~~~aF 222 (401)
T 4fdw_A 158 TVQEIVFPS---------TLE-QLKEDIFYYC-YNL--KKADLSKTKITK--LPASTFVYAGIEEVLLPVTLKEIGSQAF 222 (401)
T ss_dssp CCCEEECCT---------TCC-EECSSTTTTC-TTC--CEEECTTSCCSE--ECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred CceEEEeCC---------Ccc-EehHHHhhCc-ccC--CeeecCCCcceE--echhhEeecccCEEEeCCchheehhhHh
Confidence 467777765 444 444 467788 999 999999999988 555433368999999987 666654 57
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccccceee----------e
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTVEFEG----------E 216 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~~l~g----------~ 216 (353)
.++++|+.+++..| ++ .++.. .+.. .. ++.+.+..+ ++.|+.. .+..++.+.+.+ .
T Consensus 223 ~~~~~L~~l~l~~~-l~-~I~~~------aF~~-~~-L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VS-TIGQE------AFRE-SG-ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTCTTCCCEECCTT-CC-EECTT------TTTT-CC-CSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hCCCCCCEEecCCC-cc-Ccccc------cccc-CC-ccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 78999999999865 33 22211 1222 22 566666333 3333211 122233332222 1
Q ss_pred CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l 293 (353)
-+..|.++++|+.+++.+ .+...-. ..|. ++++|+.+++.. ..|+ ..|.++ +|+.+++++|.+
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~----~aF~--------~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQ----GLLG--------GNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECT----TTTT--------TCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhh----hhhc--------CCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 223455556666666652 3433223 3444 566666666654 3332 235555 666666666666
Q ss_pred CCCCc
Q 038586 294 DSLPD 298 (353)
Q Consensus 294 ~~iP~ 298 (353)
..+++
T Consensus 358 ~~l~~ 362 (401)
T 4fdw_A 358 PQVFE 362 (401)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 44443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=9e-09 Score=97.95 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhh----ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCL----NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~----~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l 145 (353)
.+++.|+|++ |.++..-...+...+ .+| ++|+|++|.++...+......+++|++|+|++ .+..
T Consensus 72 ~~L~~L~Ls~--------n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAG--------VRMTPVKCTVVAAVLGSGRHAL--DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTT--------SCCCHHHHHHHHHHHSSCSSCE--EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecC--------CCCCHHHHHHHHHHHhhCCCCc--eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 3678888888 777644333333321 367 88888888876531222233566788888887 2221
Q ss_pred -----CCCC-CCCCCCCEEEccCcccce----ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 146 -----IHSV-PEYPTLFDVEGYMASLVQ----ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 146 -----P~~l-~~L~~L~~L~Ls~N~l~g----~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
...+ ...++|++|+|++|.++. .++.. ...... +++|++++| .++.
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------L~~~~~-L~~L~Ls~N----------------~l~~ 197 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-------LAGNTS-VTHLSLLHT----------------GLGD 197 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-------HHTCSS-CCEEECTTS----------------SCHH
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-------HhcCCC-cCEEeCCCC----------------CCCc
Confidence 1112 245788889998888763 12222 223344 777888888 4432
Q ss_pred ----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC
Q 038586 216 ----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND 273 (353)
Q Consensus 216 ----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 273 (353)
.++..+...++|++|+|++|.++..-.......+. ..++|++|+|++..|
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--------~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--------EHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--------HCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--------hCCCCCEEeccCCCC
Confidence 23555667778888888888886421100002233 567788888888444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=83.32 Aligned_cols=202 Identities=11% Similarity=0.059 Sum_probs=138.9
Q ss_pred cEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
+++.+++.. + ++ .|+. +|.+ ..| +.+++.. .++.. -+..|.++++|+.+++.. ...+|...
T Consensus 136 ~L~~i~l~~--------~-i~-~I~~~aF~~--~~L--~~i~lp~-~l~~I-~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 136 QIAKVVLNE--------G-LK-SIGDMAFFN--STV--QEIVFPS-TLEQL-KEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCSEEECCT--------T-CC-EECTTTTTT--CCC--CEEECCT-TCCEE-CSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred CccEEEeCC--------C-cc-EECHHhcCC--CCc--eEEEeCC-CccEe-hHHHhhCcccCCeeecCCCcceEechhh
Confidence 467777776 3 54 5554 4444 468 9999986 67664 456799999999999986 77788766
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC--CCccccceee----eCCcchhc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN--NNVQTVEFEG----EMEHSLSE 223 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~--~~l~~~~l~g----~~p~~l~~ 223 (353)
...++|+.+.+..+ ++..-... +..+.. ++.+.+..| ++.|+.... ..++.+.+.. .-...|.+
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~a-------F~~~~~-L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~ 269 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQA-------FLKTSQ-LKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYY 269 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTT-------TTTCTT-CCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTT
T ss_pred EeecccCEEEeCCc-hheehhhH-------hhCCCC-CCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhC
Confidence 56799999999854 44222223 555566 778888765 554543322 3444444432 22567888
Q ss_pred cCCCCEEEcccCcCc-----ccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccCCCCCC
Q 038586 224 VYDIFDVERYSSSLD-----QILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~-----g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~N~l~~ 295 (353)
+++|+.+++.+|.+. ...+ ..|. ++++|+.+++.. ..|+. .|.++++|+.+++..| +..
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~----~aF~--------~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHP----YCLE--------GCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred CCCCCEEEeCCccccCCcccEECH----HHhh--------CCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 999999999988765 2223 4555 899999999987 44543 5778899999999655 766
Q ss_pred CCcccccccCcccchhcccc
Q 038586 296 LPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~ 315 (353)
|+.. .|..+ .|+.++...
T Consensus 337 I~~~-aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 337 INFS-AFNNT-GIKEVKVEG 354 (401)
T ss_dssp ECTT-SSSSS-CCCEEEECC
T ss_pred EcHH-hCCCC-CCCEEEEcC
Confidence 7653 78888 888887543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-07 Score=89.28 Aligned_cols=183 Identities=9% Similarity=-0.039 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCCCccccccCCcc-c-------ccHHHHHhhccccccEEEeecCCCCC---------CCCCcccCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKG-T-------ISSALLLCLNCMIYDIWTLVTINFGG---------IPVPEFVGSLSKL 134 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g-~-------lp~~l~~L~~~L~~~~L~Ls~N~l~~---------~~~P~~~~~L~~L 134 (353)
.+|++|.+.. ....| . +..++.++ ++| +.|.+..+.... . ++..+..+++|
T Consensus 107 ~~v~~L~lg~--------~~~~~~~~~~~~~~L~~s~~~l-~~L--~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L 174 (362)
T 2ra8_A 107 PSLKQITIGX--------WGYEGEDCSDIADGIVENKEKF-AHF--EGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLL 174 (362)
T ss_dssp GGCSEEEECC--------CCSSSCCSHHHHHHHHTTHHHH-TTC--SEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTC
T ss_pred hhcceEEEcc--------cccCCCcHHHHHHHHHHhhhhc-chh--hheeecCcchhhcccccccccC-HHHHHhcCCCC
Confidence 4788888887 34442 2 23456778 999 999997764421 1 44556788999
Q ss_pred cEEeccC-C-CCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccC--CcCCCCCCCCCCCccc
Q 038586 135 SLNTVDH-Q-GEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQH--NQANDIPCSSNNNVQT 210 (353)
Q Consensus 135 ~~L~Ls~-~-~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~--N~l~~i~~~~~~~l~~ 210 (353)
+.|+|++ . -.+|. + .+++|++|++..+.+....-.. +- ...+.. ++.|+|+. |.... . .
T Consensus 175 ~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~--l~---~~~lp~-L~~L~L~~~~~~~~~--~---~---- 237 (362)
T 2ra8_A 175 NNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED--IL---GSDLPN-LEKLVLYVGVEDYGF--D---G---- 237 (362)
T ss_dssp CEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH--HH---HSBCTT-CCEEEEECBCGGGTC--C---S----
T ss_pred cEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH--HH---HccCCC-CcEEEEecccccccc--c---h----
Confidence 9999987 2 34444 4 3889999999988765310000 00 001222 44444432 10000 0 0
Q ss_pred cceeeeCCcch--hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCC
Q 038586 211 VEFEGEMEHSL--SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCL 280 (353)
Q Consensus 211 ~~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l 280 (353)
.+. .+...+ ..+++|++|++++|.+....+ ..+. ....++.|+.|+|+...+ +..+..+
T Consensus 238 -~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~----~~la-----~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 238 -DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVV----EMFL-----ESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp -CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHH----HHHH-----HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred -hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHH----HHHH-----hCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 000 000111 246889999999998864322 1111 112578999999988443 3334557
Q ss_pred CCCCEEEccCCCCC
Q 038586 281 DNILEIVESEVEID 294 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~ 294 (353)
++|+.|++++|.++
T Consensus 307 ~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 307 KHLKFINMKYNYLS 320 (362)
T ss_dssp TTCSEEECCSBBCC
T ss_pred CcceEEECCCCcCC
Confidence 89999999999874
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-06 Score=78.54 Aligned_cols=20 Identities=0% Similarity=-0.127 Sum_probs=13.1
Q ss_pred CccccceEecCCCCcEEEEE
Q 038586 59 CCKWRGVCCNNTTSHFKVLN 78 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~ 78 (353)
.|.|.|+.|+....+|+.+.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v 96 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIII 96 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEE
T ss_pred HHhcCcEEECCCCCEEEEEE
Confidence 57899999975444554433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-06 Score=77.09 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=60.7
Q ss_pred hccCCCCEEEcccCcCcc--cCCCCCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCC--CCCEEEccCCCC-C
Q 038586 222 SEVYDIFDVERYSSSLDQ--ILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLD--NILEIVESEVEI-D 294 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g--~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~--~L~~L~Ls~N~l-~ 294 (353)
.++++|+.|+|++|+|++ .+| ..++ .+++|+.|+|++..+- ..+..++ +|++|+|++|.+ +
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~----~~~~--------~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS----SIVQ--------KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT----THHH--------HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccch----hHHh--------hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 467889999999999987 445 4556 7889999999883332 2344444 899999999999 7
Q ss_pred CCCcc-----cccccCcccchhccccC
Q 038586 295 SLPDR-----LVFDVREFLSELDQIAE 316 (353)
Q Consensus 295 ~iP~~-----~~~~~l~~L~~Ld~~~~ 316 (353)
.+|.. ..+..++.|+.||....
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ccCcchhHHHHHHHHCcccCeECCcCC
Confidence 78741 14677788888886443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.7e-06 Score=77.73 Aligned_cols=179 Identities=11% Similarity=-0.000 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCCccccccCC----cccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKIL----KGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDHQGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l----~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~~~~lP~ 147 (353)
.+++.|.+..... ....+ .+.+++.+..+ ++| +.|+|++|.-.. +|. + .+++|++|+|.. +.++.
T Consensus 139 ~~L~~L~l~~~~~---e~~~is~~~~~~L~~ll~~~-P~L--~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~-~~l~~ 207 (362)
T 2ra8_A 139 AHFEGLFWGDIDF---EEQEISWIEQVDLSPVLDAM-PLL--NNLKIKGTNNLS--IGK-K-PRPNLKSLEIIS-GGLPD 207 (362)
T ss_dssp TTCSEEEECCCCT---TTCCGGGCBCCBCHHHHHTC-TTC--CEEEEECCBTCB--CCS-C-BCTTCSEEEEEC-SBCCH
T ss_pred chhhheeecCcch---hhcccccccccCHHHHHhcC-CCC--cEEEEeCCCCce--ecc-c-cCCCCcEEEEec-CCCCh
Confidence 3788888866211 00111 23566777778 999 999999884222 455 4 389999999986 22332
Q ss_pred ----CC--CCCCCCCEEEccC--ccccee--cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeC
Q 038586 148 ----SV--PEYPTLFDVEGYM--ASLVQI--LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEM 217 (353)
Q Consensus 148 ----~l--~~L~~L~~L~Ls~--N~l~g~--lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~ 217 (353)
.+ ..+++|++|+|+. |...|. +.....+ +.. ..... ++.|.+.+| ++....
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~-~~~p~-Lr~L~L~~~----------------~i~~~~ 268 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSK-DRFPN-LKWLGIVDA----------------EEQNVV 268 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCT-TTCTT-CCEEEEESC----------------TTHHHH
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-Hhc-CCCCC-cCEEeCCCC----------------CCchHH
Confidence 12 3789999999864 222221 1111100 000 12344 788888888 444332
Q ss_pred Ccchh---ccCCCCEEEcccCcCccc----CCCCCccccchhhhhcccCCCccceeecCCCCCchh-hcCCCC--CCEEE
Q 038586 218 EHSLS---EVYDIFDVERYSSSLDQI----LESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIE-LLCLDN--ILEIV 287 (353)
Q Consensus 218 p~~l~---~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~-l~~l~~--L~~L~ 287 (353)
+..+. .+++|++|+|+.|.+.+. ++ ..+. .+++|+.|++++..+-.. ...+.. ...++
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~----~~L~--------~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~ 336 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLL----DHVD--------KIKHLKFINMKYNYLSDEMKKELQKSLPMKID 336 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH----TTHH--------HHTTCSEEECCSBBCCHHHHHHHHHHCCSEEE
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHH----hhcc--------cCCcceEEECCCCcCCHHHHHHHHHHcCCEEE
Confidence 22332 478899999999988652 22 2223 678999999988444432 222221 36788
Q ss_pred ccCCC
Q 038586 288 ESEVE 292 (353)
Q Consensus 288 Ls~N~ 292 (353)
+++++
T Consensus 337 ~~~~~ 341 (362)
T 2ra8_A 337 VSDSQ 341 (362)
T ss_dssp CCSBC
T ss_pred ecCCc
Confidence 88887
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-06 Score=71.62 Aligned_cols=113 Identities=10% Similarity=-0.092 Sum_probs=62.8
Q ss_pred CCCCCCCCEEEccCc-cccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee----eCCc
Q 038586 149 VPEYPTLFDVEGYMA-SLVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG----EMEH 219 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N-~l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g----~~p~ 219 (353)
+...++|++|+|++| .+... +... ...... +++|++++| .+.. .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-------L~~~~~-L~~L~Ls~n----------------~i~~~g~~~l~~ 87 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEA-------LKTNTY-VKKFSIVGT----------------RSNDPVAFALAE 87 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHH-------HTTCCS-CCEEECTTS----------------CCCHHHHHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHH-------HHhCCC-cCEEECcCC----------------CCChHHHHHHHH
Confidence 445677777777777 65421 1111 122233 666777777 3321 2334
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeec--CCCCC--------chhhcCCCCCCEEEcc
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALL--AQQND--------PIELLCLDNILEIVES 289 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L--~~~~i--------P~~l~~l~~L~~L~Ls 289 (353)
.+...+.|++|+|++|.|...--......+. ..++|++|++ ++..+ ...+...++|++|+|+
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~--------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQ--------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGG--------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHH--------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4555677888888888875321000002233 5566777777 44222 2344556788888888
Q ss_pred CCCC
Q 038586 290 EVEI 293 (353)
Q Consensus 290 ~N~l 293 (353)
+|.+
T Consensus 160 ~n~i 163 (185)
T 1io0_A 160 FTQQ 163 (185)
T ss_dssp CSSH
T ss_pred CCCC
Confidence 8877
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=1.9e-06 Score=73.52 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=54.9
Q ss_pred HHHHhhccccccEEEeecC-CCCCCC---CCcccCCCCCCcEEeccC--CC-----CCCCCCCCCCCCCEEEccCcccce
Q 038586 99 ALLLCLNCMIYDIWTLVTI-NFGGIP---VPEFVGSLSKLSLNTVDH--QG-----EIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 99 ~l~~L~~~L~~~~L~Ls~N-~l~~~~---~P~~~~~L~~L~~L~Ls~--~~-----~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
.+... +.| ++|+|++| .+.... +...+...++|++|+|++ .+ .+...+...++|++|+|++|.+..
T Consensus 31 ~l~~~-~~L--~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNND-PDL--EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTC-TTC--CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcC-CCC--CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34444 556 66666666 554210 112233444555555554 11 122233344567777777776653
Q ss_pred e----cCccccccCCCcCCCCccccceec--cCCcCCCCCCCCCCCccccceee----eCCcchhccCCCCEEEcccCcC
Q 038586 168 I----LEKDQHDEGSQNGQQGAEAEAVCI--QHNQANDIPCSSNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSL 237 (353)
Q Consensus 168 ~----lp~~~~L~l~~~~~l~~~l~~l~l--~~N~l~~i~~~~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l 237 (353)
. +... ...... ++++++ ++| .+.. .+...+...+.|++|++++|.+
T Consensus 108 ~g~~~l~~~-------L~~n~~-L~~L~L~~~~N----------------~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEA-------LQSNTS-LIELRIDNQSQ----------------PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHG-------GGGCSS-CCEEECCCCSS----------------CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHH-------HHhCCC-ceEEEecCCCC----------------CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1 1111 122223 566666 556 3322 1333445556777777777766
Q ss_pred c
Q 038586 238 D 238 (353)
Q Consensus 238 ~ 238 (353)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0072 Score=57.11 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=102.6
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CCCCCCCCCEEEccCcccc-e-------
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SVPEYPTLFDVEGYMASLV-Q------- 167 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l~~L~~L~~L~Ls~N~l~-g------- 167 (353)
.+|.++ ..| +.+.+..+. ... -...|.++++|+.+++.. ...++. .+.++..|+.+.+..+... |
T Consensus 156 ~aF~~c-~~L--~~i~l~~~~-~~I-~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATC-ESL--EYVSLPDSM-ETL-HNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp TTTTTC-TTC--CEEECCTTC-CEE-CTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred hhhccc-CCC--cEEecCCcc-cee-ccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 356777 888 888887553 332 344577888888888866 444433 4666777777766554321 0
Q ss_pred -----ecCcc-ccccCCCcCCCCccccceeccCCcCCCCCC---CCCCCccccceee-eC-CcchhccCCCCEEEcccCc
Q 038586 168 -----ILEKD-QHDEGSQNGQQGAEAEAVCIQHNQANDIPC---SSNNNVQTVEFEG-EM-EHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 168 -----~lp~~-~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~---~~~~~l~~~~l~g-~~-p~~l~~l~~L~~L~Ls~N~ 236 (353)
.+|.. +.+.-..+..... ++.+.+..+. ..+.. .....++.+.+.. .+ ...+....+|+.+.+..+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~-l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTD-LESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSS-CCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCCceeccccccccccc-ceeEEcCCCc-ceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 11111 1111111222222 3444444331 11111 1111111111110 11 234556677777777644
Q ss_pred CcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 237 LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 237 l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+..+-+ ..+. ++.+|+.+++.. ..|+ ..|.++++|+.+++..| +..|++. .|.++++|++++.
T Consensus 308 i~~I~~----~aF~--------~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~l 373 (394)
T 4fs7_A 308 VKFIGE----EAFE--------SCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVEL 373 (394)
T ss_dssp CCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEE
T ss_pred cceech----hhhc--------CCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEE
Confidence 433223 3455 777888887765 4443 35777788888888766 6666553 6777777777653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0057 Score=57.82 Aligned_cols=78 Identities=5% Similarity=-0.008 Sum_probs=55.0
Q ss_pred CcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCC
Q 038586 218 EHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEID 294 (353)
Q Consensus 218 p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~ 294 (353)
..+|.++.+|+.+++..+ ++..-. ..|. ++.+|+.+.+.. ..|+ ..|.++++|+.+++..+ +.
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~--------~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~ 378 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGK----RSFR--------GCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LE 378 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhH----Hhcc--------CCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC-CE
Confidence 456888999999999754 544334 5566 899999999976 4454 35888999999998654 43
Q ss_pred CCCcccccccCcccchh
Q 038586 295 SLPDRLVFDVREFLSEL 311 (353)
Q Consensus 295 ~iP~~~~~~~l~~L~~L 311 (353)
.+.. .|.+++.|+.+
T Consensus 379 ~~~~--~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRY--DFEDTTKFKWI 393 (394)
T ss_dssp GGGG--GBCTTCEEEEE
T ss_pred Ehhh--eecCCCCCcEE
Confidence 3444 56666666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0039 Score=49.62 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=38.4
Q ss_pred CCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 281 DNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
++|++|+|++|+|..||.. .|..++.|+.|+...+++.++|...+...|
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w 79 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG-LLDALPALRTAHLGANPWRCDCRLVPLRAW 79 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred cCCCEEECCCCcCCccChh-hhhhccccCEEEecCCCeeccCccHHHHHH
Confidence 3688888888888778763 577888888888888888888886666666
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.12 Score=48.03 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=31.2
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESE 290 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~ 290 (353)
.|.++++|+.+.+.++.+...-+ ..|. ++.+|+.+.+.. ..|+. .|.++++|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~----~aF~--------~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEP----RVFM--------DCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECT----TTTT--------TCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehh----hhhc--------CCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 45555666666666555543333 3444 566666666644 33332 355556666665543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0081 Score=50.42 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=38.2
Q ss_pred cchhccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCC----CccceeecCC-CCCch----hhcCCCCCCEEEc
Q 038586 219 HSLSEVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQE----AVEEEALLAQ-QNDPI----ELLCLDNILEIVE 288 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l----~~L~~L~L~~-~~iP~----~l~~l~~L~~L~L 288 (353)
..+..+++|++|+|++|. ++..- ...++ .+ ++|++|++++ ..|.. .+..+++|++|++
T Consensus 79 ~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~--------~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L 146 (176)
T 3e4g_A 79 DHMEGLQYVEKIRLCKCHYIEDGC----LERLS--------QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146 (176)
T ss_dssp GGGTTCSCCCEEEEESCTTCCHHH----HHHHH--------TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEE
T ss_pred HHhcCCCCCCEEEeCCCCccCHHH----HHHHH--------hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEEC
Confidence 345677888888888874 43210 01222 32 3688888877 44543 3566788888888
Q ss_pred cCCC
Q 038586 289 SEVE 292 (353)
Q Consensus 289 s~N~ 292 (353)
+++.
T Consensus 147 ~~c~ 150 (176)
T 3e4g_A 147 SDLP 150 (176)
T ss_dssp ESCT
T ss_pred CCCC
Confidence 8775
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.23 Score=46.60 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=30.9
Q ss_pred CCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++.+|+.+.+.. ..|. ..|.++.+|+.+.+..+ +..|++. .|.++++|+.++.
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~-aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPES-AFSNCTALNNIEY 364 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGG-GGTTCTTCCEEEE
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHh-HhhCCCCCCEEEE
Confidence 566666666654 3333 24556667777776433 5555543 5666666666653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.28 Score=45.57 Aligned_cols=61 Identities=20% Similarity=0.019 Sum_probs=29.3
Q ss_pred cccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCCCCCCCCCCCEEEcc
Q 038586 95 TISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIHSVPEYPTLFDVEGY 161 (353)
Q Consensus 95 ~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~~l~~L~~L~~L~Ls 161 (353)
.|+. +|.++ .+| +.+++..+ ++.. -...|.+. +|+.+.+.. ...++.......+|+.+.+.
T Consensus 59 ~Ig~~aF~~C-~~L--~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 59 SIGEANFNSC-YNM--TKVTVAST-VTSI-GDGAFADT-KLQSYTGMERVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp EECTTTTTTC-TTC--CEEEECTT-CCEE-CTTTTTTC-CCCEEEECTTCCEECTTTTTTCCCSEEECC
T ss_pred ChHHHHhhCC-CCC--CEEEeCCc-ceEe-chhhhcCC-CCceEECCceeeEeccceeccCCcccccCC
Confidence 3443 56666 777 77777543 4432 22334444 455555444 33333332223355555553
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0021 Score=54.08 Aligned_cols=80 Identities=6% Similarity=-0.032 Sum_probs=49.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCC----CCCcEEeccCCCCCC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSL----SKLSLNTVDHQGEII- 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L----~~L~~L~Ls~~~~lP- 146 (353)
++++||+++ +.++..==..+..+ ++| ++|+|+++. ++.. --..+..+ ++|++|+|++-..|.
T Consensus 62 ~L~~LDLs~--------~~Itd~GL~~L~~~-~~L--~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATD--------SCIMSIGFDHMEGL-QYV--EKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEES--------CCCCGGGGGGGTTC-SCC--CEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcC--------CCccHHHHHHhcCC-CCC--CEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 688888888 55543222345667 888 888888875 5432 12234444 368888888711121
Q ss_pred ---CCCCCCCCCCEEEccCcc
Q 038586 147 ---HSVPEYPTLFDVEGYMAS 164 (353)
Q Consensus 147 ---~~l~~L~~L~~L~Ls~N~ 164 (353)
..+.++++|++|+++++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 135567888888887764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.15 Score=47.91 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=67.0
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.|.++.+|+.+.+..+... +.. ..+..... ++.+.+..+ ++.--...|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~--I~~------~aF~~c~~-L~~i~l~~~-----------------i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS--IGT------GAFMNCPA-LQDIEFSSR-----------------ITELPESVFAGCISL 313 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE--ECT------TTTTTCTT-CCEEECCTT-----------------CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce--ecC------cccccccc-cccccCCCc-----------------ccccCceeecCCCCc
Confidence 4667788888877554321 111 11333334 555555432 222223467777888
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccCCCCCCCCccccccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDV 304 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~ 304 (353)
+.+++..+ ++.+-. ..|. ++.+|+.+.+.. ..|.. .|.++++|+.+++.++.... . .|..
T Consensus 314 ~~i~lp~~-v~~I~~----~aF~--------~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~--~~~~ 376 (394)
T 4gt6_A 314 KSIDIPEG-ITQILD----DAFA--------GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--N--AIST 376 (394)
T ss_dssp CEEECCTT-CCEECT----TTTT--------TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--H--TCBC
T ss_pred CEEEeCCc-ccEehH----hHhh--------CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--h--hhhc
Confidence 88888654 433333 4455 788888888865 45543 57778888888888775411 1 2334
Q ss_pred Ccccchhc
Q 038586 305 REFLSELD 312 (353)
Q Consensus 305 l~~L~~Ld 312 (353)
...|+.++
T Consensus 377 ~~~L~~i~ 384 (394)
T 4gt6_A 377 DSGLQNLP 384 (394)
T ss_dssp CCCC----
T ss_pred cCCCCEEE
Confidence 45555544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.061 Score=42.54 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=31.9
Q ss_pred EEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccCCCCCCCCCCCCCC
Q 038586 76 VLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDHQGEIIHSVPEYPT 154 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~~~~lP~~l~~L~~ 154 (353)
.++.++ ++++ ..+|..+ ...| ++|+|++|+|+. +|.. .|..+++
T Consensus 12 ~v~Cs~--------~~L~~~~vP~~l---p~~l--~~L~Ls~N~l~~--l~~~--------------------~f~~l~~ 56 (130)
T 3rfe_A 12 LVDCGR--------RGLTWASLPTAF---PVDT--TELVLTGNNLTA--LPPG--------------------LLDALPA 56 (130)
T ss_dssp EEECCS--------SCCCTTTSCSCC---CTTC--SEEECTTSCCSS--CCTT--------------------TGGGCTT
T ss_pred EEEeCC--------CCCccccCCCCC---CcCC--CEEECCCCcCCc--cChh--------------------hhhhccc
Confidence 566666 6664 3455432 1456 777777777776 3332 1344556
Q ss_pred CCEEEccCcccc
Q 038586 155 LFDVEGYMASLV 166 (353)
Q Consensus 155 L~~L~Ls~N~l~ 166 (353)
|++|+|++|.+.
T Consensus 57 L~~L~L~~NP~~ 68 (130)
T 3rfe_A 57 LRTAHLGANPWR 68 (130)
T ss_dssp CCEEECCSSCCB
T ss_pred cCEEEecCCCee
Confidence 666667666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.03 Score=47.82 Aligned_cols=67 Identities=10% Similarity=-0.094 Sum_probs=34.1
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--C-CCc--------hhhcCCCCCCEEE
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--Q-NDP--------IELLCLDNILEIV 287 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~-~iP--------~~l~~l~~L~~L~ 287 (353)
+.+..-+.|++|+|++|.|...-- ..+. +..+.-+.|++|+|++ . .+- ..+..-+.|+.|+
T Consensus 92 ~aL~~N~tL~~L~L~~N~Ig~~Ga----~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~ 163 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFLTPELL----ARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVG 163 (197)
T ss_dssp HHHHHCSSCCEEECCSSBCCHHHH----HHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHhcCCccCeEecCCCcCCHHHH----HHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEe
Confidence 344445678888888887753110 1111 0011334566676653 1 222 2333446677777
Q ss_pred ccCCCC
Q 038586 288 ESEVEI 293 (353)
Q Consensus 288 Ls~N~l 293 (353)
++.|.+
T Consensus 164 l~~~~~ 169 (197)
T 1pgv_A 164 ISFASM 169 (197)
T ss_dssp CCCCCH
T ss_pred ccCCCc
Confidence 776655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 353 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-08 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.3 bits (121), Expect = 6e-08
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 25 CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCC--KWRGVCCNNTTSHFKVLNLRSS 82
C ++K+ALL ++ + LSSW D CC W GV C+ T ++V NL S
Sbjct: 3 CNPQDKQALLQIKKD-LGNPTTLSSWLPTTD---CCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 83 N 83
Sbjct: 59 G 59
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.81 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.78 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.77 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.63 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.5 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.48 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.36 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.3 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.25 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.23 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.21 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.17 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.95 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 98.94 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.92 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 98.9 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.87 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.82 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.77 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.43 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.41 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.82 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.54 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 97.48 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.46 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.43 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.9 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.76 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 88.45 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=5e-35 Score=271.05 Aligned_cols=149 Identities=24% Similarity=0.382 Sum_probs=122.1
Q ss_pred cCcHHHHHHHHHHHhCCCCCCCCCCCC-CCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCccccccCCcc--cc
Q 038586 24 RCIDEEKEALLTFEQSPVDEYGALSSW-GREDDKRNCCK--WRGVCCNNTT--SHFKVLNLRSSNDENARRKILKG--TI 96 (353)
Q Consensus 24 ~~~~~e~~aLl~~k~~~~~~~~~~~~W-~~~~~~~~~C~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~l 96 (353)
-|.++|++||++||+++.+|. .+++| .++| ||. |.||+|+..+ +||++|+|++ ++++| .+
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d----~C~~~w~gv~C~~~~~~~~v~~L~L~~--------~~l~g~~~l 68 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTD----CCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSC----TTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCC----CCCCcCCCeEEeCCCCcEEEEEEECCC--------CCCCCCCCC
Confidence 399999999999999999875 68899 4677 994 9999998643 4899999999 88887 58
Q ss_pred cHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 97 SSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 97 p~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
|+++++| ++| ++|+|++ |+++|. +|+.|+++++|++|+|++ .+..|..+..+++|+++++++|.+.+.+|..
T Consensus 69 p~~l~~L-~~L--~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~ 144 (313)
T d1ogqa_ 69 PSSLANL-PYL--NFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGC-TTC--SEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChHHhcC-ccc--cccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence 8999999 999 9999986 899988 999999999999999998 4555666778888888888888887776655
Q ss_pred ccccCCCcCCCCccccceeccCCcC
Q 038586 173 QHDEGSQNGQQGAEAEAVCIQHNQA 197 (353)
Q Consensus 173 ~~L~l~~~~~l~~~l~~l~l~~N~l 197 (353)
+..+.. ++.+++++|++
T Consensus 145 -------l~~l~~-L~~l~l~~n~l 161 (313)
T d1ogqa_ 145 -------ISSLPN-LVGITFDGNRI 161 (313)
T ss_dssp -------GGGCTT-CCEEECCSSCC
T ss_pred -------hccCcc-cceeecccccc
Confidence 444444 45555555533
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-20 Score=170.10 Aligned_cols=203 Identities=15% Similarity=0.066 Sum_probs=157.5
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
...++|.++ ++++ .+|+.+. +.+ ++|+|++|.|++. .+..|.++++|++|+|++ ...+|. ++
T Consensus 11 ~~~~v~C~~--------~~L~-~iP~~lp---~~l--~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~~l~~-~~ 74 (266)
T d1p9ag_ 11 SHLEVNCDK--------RNLT-ALPPDLP---KDT--TILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQV-DG 74 (266)
T ss_dssp TCCEEECTT--------SCCS-SCCSCCC---TTC--CEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEEC-CS
T ss_pred CCeEEEccC--------CCCC-eeCcCcC---cCC--CEEECcCCcCCCc-CHHHhhcccccccccccccccccccc-cc
Confidence 344567777 7887 6776542 567 9999999999884 345688999999999998 666664 57
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
.+++|++|++++|++++ .+.. +..+.. ++.+++++| .+.+..+..+..+.++++|
T Consensus 75 ~l~~L~~L~Ls~N~l~~-~~~~-------~~~l~~-L~~L~l~~~----------------~~~~~~~~~~~~l~~l~~L 129 (266)
T d1p9ag_ 75 TLPVLGTLDLSHNQLQS-LPLL-------GQTLPA-LTVLDVSFN----------------RLTSLPLGALRGLGELQEL 129 (266)
T ss_dssp CCTTCCEEECCSSCCSS-CCCC-------TTTCTT-CCEEECCSS----------------CCCCCCSSTTTTCTTCCEE
T ss_pred ccccccccccccccccc-cccc-------cccccc-ccccccccc----------------ccceeeccccccccccccc
Confidence 88999999999998874 3444 455666 888889888 5555556677788889999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVRE 306 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~ 306 (353)
++++|.+.+..+ ..+. .++.++.+++++ ..+| ..+..+++|++|+|++|+|..||+ .+..++
T Consensus 130 ~l~~n~l~~l~~----~~~~--------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~--~~~~~~ 195 (266)
T d1p9ag_ 130 YLKGNELKTLPP----GLLT--------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSH 195 (266)
T ss_dssp ECTTSCCCCCCT----TTTT--------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred cccccccceecc----cccc--------ccccchhcccccccccccCccccccccccceeecccCCCcccCh--hHCCCC
Confidence 999998887666 5666 788899999988 3444 457788999999999999999998 777888
Q ss_pred ccchhccccCCCcccccccccccc
Q 038586 307 FLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 307 ~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.|+.|+...+++.++|...+-..|
T Consensus 196 ~L~~L~L~~Np~~CdC~~~~l~~w 219 (266)
T d1p9ag_ 196 LLPFAFLHGNPWLCNCEILYFRRW 219 (266)
T ss_dssp CCSEEECCSCCBCCSGGGHHHHHH
T ss_pred CCCEEEecCCCCCCCcchHHHHHH
Confidence 899999888999888876554455
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.3e-20 Score=166.94 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=172.1
Q ss_pred cEEEEEcCCCCCccccccCCccccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEI-IH 147 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~l-P~ 147 (353)
.++.|+|++ |+++ .+| .+|.++ +.| ++|++++|.+.+. .+..+..++.++.++... ...+ |.
T Consensus 33 ~~~~L~Ls~--------N~i~-~i~~~~f~~l-~~L--~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 99 (284)
T d1ozna_ 33 ASQRIFLHG--------NRIS-HVPAASFRAC-RNL--TILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (284)
T ss_dssp TCSEEECTT--------SCCC-EECTTTTTTC-TTC--CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCEEECcC--------CcCC-CCCHHHhhcc-ccc--ccccccccccccc-ccccccccccccccccccccccccccch
Confidence 578899999 8998 555 478889 999 9999999999987 666788899999998776 4445 56
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+.++++|++|++++|.+.+..+.. ...... ++.+++++| ++++..+..|..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~~~-L~~l~l~~N----------------~l~~i~~~~f~~~~~L 155 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCGLQELGPGL-------FRGLAA-LQYLYLQDN----------------ALQALPDDTFRDLGNL 155 (284)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTC
T ss_pred hhcccccCCEEecCCcccccccccc-------cchhcc-cchhhhccc----------------cccccChhHhccccch
Confidence 7899999999999999987544444 555555 889999999 6665556778889999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLVFD 303 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~ 303 (353)
++|++++|++++..+ ..+. ++++|+.+++++ +..|..+..+++|++|++++|++..+|+. .|+
T Consensus 156 ~~L~l~~N~l~~l~~----~~f~--------~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-~~~ 222 (284)
T d1ozna_ 156 THLFLHGNRISSVPE----RAFR--------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALA 222 (284)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHT
T ss_pred hhcccccCcccccch----hhhc--------cccccchhhhhhccccccChhHhhhhhhccccccccccccccccc-ccc
Confidence 999999999998777 7777 899999999998 44578899999999999999999555542 789
Q ss_pred cCcccchhccccCCCcccccccccccc
Q 038586 304 VREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 304 ~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.++.|+.++.-.++..+.|...+...|
T Consensus 223 ~~~~L~~L~l~~N~l~C~C~~~~l~~~ 249 (284)
T d1ozna_ 223 PLRALQYLRLNDNPWVCDCRARPLWAW 249 (284)
T ss_dssp TCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred cccccCEEEecCCCCCCCccchHHHHH
Confidence 999999999999999999987666555
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.80 E-value=4.2e-20 Score=169.71 Aligned_cols=209 Identities=14% Similarity=0.115 Sum_probs=165.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|+|+++ |+++|.+|++++++ ++| ++|+|++|++.+. .|..+..+.+|++++++. .+.+|..
T Consensus 76 ~~L~~L~Ls~~-------N~l~g~iP~~i~~L-~~L--~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~ 144 (313)
T d1ogqa_ 76 PYLNFLYIGGI-------NNLVGPIPPAIAKL-TQL--HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp TTCSEEEEEEE-------TTEESCCCGGGGGC-TTC--SEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ccccccccccc-------cccccccccccccc-ccc--chhhhcccccccc-ccccccchhhhcccccccccccccCchh
Confidence 36788899752 68999999999999 999 9999999999997 788899999999999998 7889999
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC-------CCccccceeeeCCcch
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN-------NNVQTVEFEGEMEHSL 221 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~-------~~l~~~~l~g~~p~~l 221 (353)
++++++|+++++++|.+.|.+|.. ...+....+.+.+++|+++....... ..+....+.|.+|..+
T Consensus 145 l~~l~~L~~l~l~~n~l~~~ip~~-------~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~ 217 (313)
T d1ogqa_ 145 ISSLPNLVGITFDGNRISGAIPDS-------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGG-------GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred hccCcccceeeccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999987 55555545778888886654321111 1222345667778888
Q ss_pred hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCC
Q 038586 222 SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSL 296 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~i 296 (353)
..+++++.+++++|.+.+.+| .++ .+++|+.|++++ |.+|.+++++++|++|+|++|+| |.|
T Consensus 218 ~~~~~l~~l~~~~~~l~~~~~-----~~~--------~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i 284 (313)
T d1ogqa_ 218 GSDKNTQKIHLAKNSLAFDLG-----KVG--------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGG-----GCC--------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred ccccccccccccccccccccc-----ccc--------cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence 888888888888888877655 466 678888888887 67888888888888888888888 788
Q ss_pred CcccccccCcccchhccc
Q 038586 297 PDRLVFDVREFLSELDQI 314 (353)
Q Consensus 297 P~~~~~~~l~~L~~Ld~~ 314 (353)
|+ ++++++|+.++..
T Consensus 285 P~---~~~L~~L~~l~l~ 299 (313)
T d1ogqa_ 285 PQ---GGNLQRFDVSAYA 299 (313)
T ss_dssp CC---STTGGGSCGGGTC
T ss_pred CC---cccCCCCCHHHhC
Confidence 77 4666666665543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=8.4e-18 Score=153.45 Aligned_cols=230 Identities=15% Similarity=0.151 Sum_probs=175.6
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCcccC
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
|.|.+|.|++. ...++.|+|++ |+++ .+|+ +|.++ ++| ++|++++|.+... .|..|.
T Consensus 10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~--------N~i~-~l~~~~f~~l-~~L--~~L~l~~n~~~~i-~~~~f~ 76 (305)
T d1xkua_ 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKIT-EIKDGDFKNL-KNL--HTLILINNKISKI-SPGAFA 76 (305)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCC-CBCTTTTTTC-TTC--CEEECCSSCCCCB-CTTTTT
T ss_pred ecCCEEEecCCCCCccCCCCCCCCCEEECcC--------CcCC-CcChhHhhcc-ccc--ccccccccccccc-chhhhh
Confidence 78999999642 24688899999 8887 5664 68888 999 9999999999986 577899
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceec-------CccccccCCCc------------CCCCcccc
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQIL-------EKDQHDEGSQN------------GQQGAEAE 188 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~l-------p~~~~L~l~~~------------~~l~~~l~ 188 (353)
++++|++|++++ ...+|..+. ..++.|++.+|.+.+.. +..+.++...+ ..+.. ++
T Consensus 77 ~l~~L~~L~l~~n~l~~l~~~~~--~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~-L~ 153 (305)
T d1xkua_ 77 PLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LS 153 (305)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CC
T ss_pred CCCccCEecccCCccCcCccchh--hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc-cC
Confidence 999999999998 777887654 57889999988877421 12223333222 22333 67
Q ss_pred ceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcc
Q 038586 189 AVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVE 263 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L 263 (353)
.+.+++|++..++......++.+ ..++..+..+.+++.+++|++++|++.+..+ ..+. ++++|
T Consensus 154 ~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~----~~~~--------~l~~L 221 (305)
T d1xkua_ 154 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLA--------NTPHL 221 (305)
T ss_dssp EEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGG--------GSTTC
T ss_pred ccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc----cccc--------ccccc
Confidence 78899999888876665555544 4456778889999999999999999998777 7778 89999
Q ss_pred ceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccccc------ccCcccchhccccCCC
Q 038586 264 EEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVF------DVREFLSELDQIAEPR 318 (353)
Q Consensus 264 ~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~------~~l~~L~~Ld~~~~~~ 318 (353)
++|+|++ ..+|.++..+++|++|+|++|+|..|+.. +| ..+..|+.|+...++.
T Consensus 222 ~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~-~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 222 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSSS
T ss_pred eeeecccccccccccccccccCCCEEECCCCccCccChh-hccCcchhcccCCCCEEECCCCcC
Confidence 9999998 78899999999999999999999888752 33 3345565565544443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.4e-18 Score=154.55 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=148.8
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|+|++ |.+++..+.+|.++ ++| ++|+|++|+|+. +|. ++.+++|++|+|++ ...+|..+
T Consensus 31 ~~l~~L~Ls~--------N~i~~l~~~~f~~l-~~L--~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 96 (266)
T d1p9ag_ 31 KDTTILHLSE--------NLLYTFSLATLMPY-TRL--TQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG 96 (266)
T ss_dssp TTCCEEECTT--------SCCSEEEGGGGTTC-TTC--CEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred cCCCEEECcC--------CcCCCcCHHHhhcc-ccc--cccccccccccc--ccc-cccccccccccccccccccccccc
Confidence 4689999999 99985445678899 999 999999999987 664 57899999999999 66778889
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
.++++|++|++++|.+.+..+.. ...+.. ++.+.+++| .+++..+..+..+++++.
T Consensus 97 ~~l~~L~~L~l~~~~~~~~~~~~-------~~~l~~-l~~L~l~~n----------------~l~~l~~~~~~~l~~l~~ 152 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRLTSLPLGA-------LRGLGE-LQELYLKGN----------------ELKTLPPGLLTPTPKLEK 152 (266)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST-------TTTCTT-CCEEECTTS----------------CCCCCCTTTTTTCTTCCE
T ss_pred ccccccccccccccccceeeccc-------cccccc-ccccccccc----------------ccceeccccccccccchh
Confidence 99999999999999988655554 555666 889999999 666555667788999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
+++++|++++..+ ..++ .+++|++|+|++ ..+|+.+..+++|+.|+|++|++
T Consensus 153 l~l~~N~l~~~~~----~~~~--------~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 153 LSLANNNLTELPA----GLLN--------GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp EECTTSCCSCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cccccccccccCc----cccc--------cccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence 9999999998777 7788 899999999998 88999999999999999999998
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-15 Score=135.49 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=146.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEee-cCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLV-TINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls-~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~ 147 (353)
..++.+++++ +.+.+..+..+..+ ..+ +.++.. .|.++.. .|..|.++++|++|++++ ...+ +.
T Consensus 56 ~~L~~L~ls~--------n~l~~i~~~~~~~~-~~~--~~l~~~~~~~~~~l-~~~~~~~l~~L~~L~l~~n~~~~~~~~ 123 (284)
T d1ozna_ 56 RNLTILWLHS--------NVLARIDAAAFTGL-ALL--EQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPG 123 (284)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred cccccccccc--------cccccccccccccc-ccc--cccccccccccccc-cchhhcccccCCEEecCCccccccccc
Confidence 3689999999 89886666677777 888 888775 5667765 577899999999999999 4444 44
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+...++|+.+++++|++++..+.. +..... ++.+++++| ++++..+..|.++++|
T Consensus 124 ~~~~~~~L~~l~l~~N~l~~i~~~~-------f~~~~~-L~~L~l~~N----------------~l~~l~~~~f~~l~~L 179 (284)
T d1ozna_ 124 LFRGLAALQYLYLQDNALQALPDDT-------FRDLGN-LTHLFLHGN----------------RISSVPERAFRGLHSL 179 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCEECTTTTTTCTTC
T ss_pred ccchhcccchhhhccccccccChhH-------hccccc-hhhcccccC----------------cccccchhhhcccccc
Confidence 5778999999999999998655565 666666 899999999 7887778889999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
+++++++|++++..| ..++ .+++|++|++++ +..|..+..+++|++|++++|++
T Consensus 180 ~~l~l~~N~l~~i~~----~~f~--------~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 180 DRLLLHQNRVAHVHP----HAFR--------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred chhhhhhccccccCh----hHhh--------hhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence 999999999999889 8888 999999999999 44456788999999999999999
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=2.9e-15 Score=136.35 Aligned_cols=209 Identities=9% Similarity=0.002 Sum_probs=136.8
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC--CCCC-CCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH--QGEI-IHSVP 150 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~--~~~l-P~~l~ 150 (353)
+.+|-++ ++++ .+|+.+ . +.+ ++|+|++|+++. +|+ .|.++++|++|++++ ...+ |..|.
T Consensus 13 ~~~~C~~--------~~L~-~lP~~l--~-~~l--~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~ 76 (305)
T d1xkua_ 13 RVVQCSD--------LGLE-KVPKDL--P-PDT--ALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFA 76 (305)
T ss_dssp TEEECTT--------SCCC-SCCCSC--C-TTC--CEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEecC--------CCCC-ccCCCC--C-CCC--CEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhh
Confidence 4578777 7887 788754 3 778 999999999998 564 799999999999998 5555 56799
Q ss_pred CCCCCCEEEccCcccceecCcc-----ccccCCCcCCCCc---------cccceeccCCcCCCCCC-----CCCCCcccc
Q 038586 151 EYPTLFDVEGYMASLVQILEKD-----QHDEGSQNGQQGA---------EAEAVCIQHNQANDIPC-----SSNNNVQTV 211 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~-----~~L~l~~~~~l~~---------~l~~l~l~~N~l~~i~~-----~~~~~l~~~ 211 (353)
++++|++|++++|+++ .+|.. +.|++..+..... ....+....|....... .....++.+
T Consensus 77 ~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l 155 (305)
T d1xkua_ 77 PLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155 (305)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCccCEecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence 9999999999999987 44432 3333333221111 01112222221111000 001111111
Q ss_pred ceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCC-chhhcCCCCC
Q 038586 212 EFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND-PIELLCLDNI 283 (353)
Q Consensus 212 ~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i-P~~l~~l~~L 283 (353)
.+.+ .+|.. ..++|++|++++|...+..+ ..+. .++.++.|++++ ..+ |..+..+++|
T Consensus 156 ~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~----~~~~--------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L 221 (305)
T d1xkua_ 156 RIADTNITTIPQG--LPPSLTELHLDGNKITKVDA----ASLK--------GLNNLAKLGLSFNSISAVDNGSLANTPHL 221 (305)
T ss_dssp ECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECT----GGGT--------TCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred ccccCCccccCcc--cCCccCEEECCCCcCCCCCh----hHhh--------ccccccccccccccccccccccccccccc
Confidence 1111 12222 23456666666666655555 5555 888999999988 333 5567889999
Q ss_pred CEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 284 LEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 284 ~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
++|+|++|+|..+|+ .|..+++|+.|+...+
T Consensus 222 ~~L~L~~N~L~~lp~--~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 222 RELHLNNNKLVKVPG--GLADHKYIQVVYLHNN 252 (305)
T ss_dssp CEEECCSSCCSSCCT--TTTTCSSCCEEECCSS
T ss_pred eeeeccccccccccc--ccccccCCCEEECCCC
Confidence 999999999999999 8999999999986544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.4e-15 Score=128.98 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=120.7
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCc-cc
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPE-FV 128 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~ 128 (353)
|....|.|... ...+++|++++ |.++ .+|+ .|.++ ++| ++|++++|.+... +|. .|
T Consensus 8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~--------n~i~-~l~~~~f~~l-~~L--~~L~ls~n~~~~~-i~~~~f 74 (242)
T d1xwdc1 8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLR-VIQKGAFSGF-GDL--EKIEISQNDVLEV-IEADVF 74 (242)
T ss_dssp ECSSEEEEESCSCSSCCSCSCSCCSEEEEES--------CCCC-EECTTTTTTC-TTC--CEEEEESCTTCCE-ECSSSE
T ss_pred CcCCEEEEeCCCCCCcCCCCCCCCCEEECcC--------CcCC-ccChhHhhcc-chh--hhhhhccccccce-eecccc
Confidence 56677777531 12466666666 6665 3443 45566 666 6666666666553 332 35
Q ss_pred CCCCCCcEEeccC---CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCC
Q 038586 129 GSLSKLSLNTVDH---QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSS 204 (353)
Q Consensus 129 ~~L~~L~~L~Ls~---~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~ 204 (353)
..+++++++.+.. ...+ +..+.++++|+++++++|.+.. .+... ....+.. +.....+++
T Consensus 75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~~-----~~~~l~~-l~~~~~~n~--------- 138 (242)
T d1xwdc1 75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVH-----KIHSLQK-VLLDIQDNI--------- 138 (242)
T ss_dssp ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS-CCCCT-----TTCBSSC-EEEEEESCT---------
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhcc-ccccc-----ccccccc-ccccccccc---------
Confidence 6666666666543 2222 3345666666666666666552 22110 0111122 233333343
Q ss_pred CCCccccceeeeCCcchhcc-CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee-ecCC---CCCchh-hc
Q 038586 205 NNNVQTVEFEGEMEHSLSEV-YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA-LLAQ---QNDPIE-LL 278 (353)
Q Consensus 205 ~~~l~~~~l~g~~p~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L-~L~~---~~iP~~-l~ 278 (353)
.+...-+..+..+ ..++.|++++|+++...+ ..+ ....+.++ .+++ ..+|.. +.
T Consensus 139 -------~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~----~~~---------~~~~l~~~~~l~~n~l~~l~~~~f~ 198 (242)
T d1xwdc1 139 -------NIHTIERNSFVGLSFESVILWLNKNGIQEIHN----CAF---------NGTQLDELNLSDNNNLEELPNDVFH 198 (242)
T ss_dssp -------TCCEECTTSSTTSBSSCEEEECCSSCCCEECT----TTT---------TTCCEEEEECTTCTTCCCCCTTTTT
T ss_pred -------ccccccccccccccccceeeeccccccccccc----ccc---------cchhhhccccccccccccccHHHhc
Confidence 3333334455555 378899999999986444 333 34455444 4454 667765 78
Q ss_pred CCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 279 CLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
.+++|++|++++|++..+|+. .|..++.|+.++.
T Consensus 199 ~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 199 GASGPVILDISRTRIHSLPSY-GLENLKKLRARST 232 (242)
T ss_dssp TSCCCSEEECTTSCCCCCCSS-SCTTCCEEESSSE
T ss_pred CCCCCCEEECCCCcCCccCHH-HHcCCcccccCcC
Confidence 899999999999999888873 6888888887765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.5e-14 Score=126.07 Aligned_cols=178 Identities=8% Similarity=0.063 Sum_probs=129.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.|++.+ ++++ .++ .+.++ ++| ++|++++|.+++. + .+..+++|+++++++ ...++ .++
T Consensus 42 ~L~~L~l~~--------~~i~-~l~-~l~~l-~~L--~~L~ls~n~i~~~--~-~l~~l~~l~~l~~~~n~~~~i~-~l~ 104 (227)
T d1h6ua2 42 GITTLSAFG--------TGVT-TIE-GVQYL-NNL--IGLELKDNQITDL--A-PLKNLTKITELELSGNPLKNVS-AIA 104 (227)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCCC--G-GGTTCCSCCEEECCSCCCSCCG-GGT
T ss_pred CcCEEECCC--------CCCC-cch-hHhcC-CCC--cEeecCCceeecc--c-cccccccccccccccccccccc-ccc
Confidence 577888888 7776 454 47777 888 8888888888773 3 277888888888887 44444 467
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|++++++++...+..+ ...... ...+.++.+ .+.. ...+...++|++|
T Consensus 105 ~l~~L~~l~l~~~~~~~~~~---------~~~~~~-~~~l~~~~~----------------~~~~--~~~~~~~~~L~~L 156 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITDVTP---------LAGLSN-LQVLYLDLN----------------QITN--ISPLAGLTNLQYL 156 (227)
T ss_dssp TCTTCCEEECTTSCCCCCGG---------GTTCTT-CCEEECCSS----------------CCCC--CGGGGGCTTCCEE
T ss_pred ccccccccccccccccccch---------hccccc-hhhhhchhh----------------hhch--hhhhccccccccc
Confidence 78888888888877653222 112222 455566666 3332 2346788899999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREF 307 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~ 307 (353)
++++|.+.+. ..++ ++++|++|++++ ..+| .+..+++|++|++++|++..+|+ ++++++
T Consensus 157 ~l~~n~~~~~------~~l~--------~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~---l~~l~~ 218 (227)
T d1h6ua2 157 SIGNAQVSDL------TPLA--------NLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP---LANTSN 218 (227)
T ss_dssp ECCSSCCCCC------GGGT--------TCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGG---GTTCTT
T ss_pred cccccccccc------hhhc--------ccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCcc---cccCCC
Confidence 9999988642 2366 899999999998 4454 48889999999999999988887 778888
Q ss_pred cchhcc
Q 038586 308 LSELDQ 313 (353)
Q Consensus 308 L~~Ld~ 313 (353)
|+.|+.
T Consensus 219 L~~L~l 224 (227)
T d1h6ua2 219 LFIVTL 224 (227)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 888764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=2.2e-14 Score=123.81 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=117.6
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+++.++. ..+ ..| ++|++++|.++. ++ .+..+++|++|++++ ...+++ ++++++|++|++++|++++
T Consensus 34 ~~~~~~~~~--~~L-~~L--~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~ 104 (210)
T d1h6ta2 34 KSVTDAVTQ--NEL-NSI--DQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (210)
T ss_dssp SCTTSEECH--HHH-HTC--CEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CccCCccCH--HHh-cCc--cEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc
Confidence 555555553 345 677 888888888876 33 367788888888888 555553 6778888888888888763
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
+|. +..+.. ++.+++++| .+. -...+..+++++.+++++|.+++. .
T Consensus 105 -l~~--------l~~l~~-L~~L~l~~~----------------~~~--~~~~l~~l~~l~~l~~~~n~l~~~------~ 150 (210)
T d1h6ta2 105 -LSS--------LKDLKK-LKSLSLEHN----------------GIS--DINGLVHLPQLESLYLGNNKITDI------T 150 (210)
T ss_dssp -GGG--------GTTCTT-CCEEECTTS----------------CCC--CCGGGGGCTTCCEEECCSSCCCCC------G
T ss_pred -ccc--------cccccc-ccccccccc----------------ccc--cccccccccccccccccccccccc------c
Confidence 332 334455 777777777 332 123567778888888888887642 2
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
.++ .+++|+.+++++ ..++ .+.++++|++|++++|++..+|. +..+++|+.|+.
T Consensus 151 ~~~--------~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~L 207 (210)
T d1h6ta2 151 VLS--------RLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLEL 207 (210)
T ss_dssp GGG--------GCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEE
T ss_pred ccc--------ccccccccccccccccccc-cccCCCCCCEEECCCCCCCCChh---hcCCCCCCEEEc
Confidence 345 677888888887 3444 37788889999999998877765 777788877764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.57 E-value=1.9e-15 Score=128.75 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=98.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
++++ .+|+.+ . +++ ++|+|++|.|++...+..|.++++|++|+|++ .+..+..+..+++|++|++++|+++
T Consensus 18 ~~L~-~iP~~l--p-~~l--~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~ 91 (192)
T d1w8aa_ 18 RGLK-EIPRDI--P-LHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp SCCS-SCCSCC--C-TTC--SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred CCcC-ccCCCC--C-CCC--CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence 7777 778654 2 678 99999999998741355688999999999988 4445667888999999999999999
Q ss_pred eecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCccc
Q 038586 167 QILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 167 g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
+..|.. +..+.. +++|+|++| ++++..|..|..+++|++|+|++|.+...
T Consensus 92 ~l~~~~-------F~~l~~-L~~L~L~~N----------------~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 92 EISNKM-------FLGLHQ-LKTLNLYDN----------------QISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECSSS-------STTCTT-CCEEECCSS----------------CCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ccCHHH-------HhCCCc-ccccccCCc----------------cccccCHHHhcCCcccccccccccccccc
Confidence 766766 777787 899999999 77776777888999999999999988653
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=2.5e-14 Score=122.31 Aligned_cols=167 Identities=10% Similarity=0.076 Sum_probs=111.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+++.++ ...+ .++ ++|++++|.++. ++ .+..+++|++|++++ ...+++ ++++++|++|++++|.+.
T Consensus 28 ~~~~~~~~--~~~l-~~l--~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~- 97 (199)
T d2omxa2 28 TNVTDTVS--QTDL-DQV--TTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA- 97 (199)
T ss_dssp SSTTSEEC--HHHH-TTC--CEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCccC--HHHh-cCC--CEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccc-
Confidence 45554443 2355 677 777777777765 33 466777777777777 444443 677777888888777665
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
.++. +..+.. ++.+++++| .... ...+..+++|+.|++++|++.. ++
T Consensus 98 ~~~~--------l~~l~~-L~~L~l~~~----------------~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~----- 144 (199)
T d2omxa2 98 DITP--------LANLTN-LTGLTLFNN----------------QITD--IDPLKNLTNLNRLELSSNTISD-IS----- 144 (199)
T ss_dssp CCGG--------GTTCTT-CSEEECCSS----------------CCCC--CGGGTTCTTCSEEECCSSCCCC-CG-----
T ss_pred cccc--------cccccc-ccccccccc----------------cccc--ccccchhhhhHHhhhhhhhhcc-cc-----
Confidence 2222 233444 667777776 3332 2346677888888888888753 33
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchh
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSEL 311 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~L 311 (353)
.+. .+++|+.|++.+ ..++ .+..+++|++|++++|++..+|. ++.+++|++|
T Consensus 145 ~l~--------~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 145 ALS--------GLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDISV---LAKLTNLESL 199 (199)
T ss_dssp GGT--------TCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEE
T ss_pred ccc--------ccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCcc---ccCCCCCCcC
Confidence 355 778888888887 3443 47889999999999999977865 6677777654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=5.2e-14 Score=121.43 Aligned_cols=158 Identities=9% Similarity=0.050 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.+++++ +.++ .+++ +..+ ++| ++|++++|.+++ ++ .++.+++|++|++++ ...+| .+.
T Consensus 47 ~L~~L~l~~--------~~i~-~l~~-l~~l-~~L--~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~l~-~l~ 109 (210)
T d1h6ta2 47 SIDQIIANN--------SDIK-SVQG-IQYL-PNV--TKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKDLS-SLK 109 (210)
T ss_dssp TCCEEECTT--------SCCC-CCTT-GGGC-TTC--CEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCGG-GGT
T ss_pred CccEEECcC--------CCCC-Cchh-HhhC-CCC--CEEeCCCccccC--cc-ccccCccccccccccccccccc-ccc
Confidence 578899999 7776 3443 7778 999 999999999998 55 368999999999998 66676 588
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|+.|++++|.+. .++. +..+.. ++.+++++| .+++ +..+..+++|+++
T Consensus 110 ~l~~L~~L~l~~~~~~-~~~~--------l~~l~~-l~~l~~~~n----------------~l~~--~~~~~~l~~L~~l 161 (210)
T d1h6ta2 110 DLKKLKSLSLEHNGIS-DING--------LVHLPQ-LESLYLGNN----------------KITD--ITVLSRLTKLDTL 161 (210)
T ss_dssp TCTTCCEEECTTSCCC-CCGG--------GGGCTT-CCEEECCSS----------------CCCC--CGGGGGCTTCSEE
T ss_pred cccccccccccccccc-cccc--------cccccc-ccccccccc----------------cccc--ccccccccccccc
Confidence 9999999999999876 3332 344455 788888888 4442 3356788999999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccC
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESE 290 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~ 290 (353)
++++|++++ ++ .++ ++++|++|++++ ..+| .+..+++|++|+|++
T Consensus 162 ~l~~n~l~~-i~-----~l~--------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 162 SLEDNQISD-IV-----PLA--------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ECCSSCCCC-CG-----GGT--------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred ccccccccc-cc-----ccc--------CCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 999999976 33 366 899999999998 5566 588999999999874
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.50 E-value=1.1e-13 Score=128.67 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=63.7
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
..+..++++++|++++|++++..| +. .+++|++|++++ ..+| .+..+++|++|++++|++..
T Consensus 301 ~~~~~~~~l~~L~ls~n~l~~l~~------l~--------~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~ 365 (384)
T d2omza2 301 SPISNLKNLTYLTLYFNNISDISP------VS--------SLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISD 365 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG------GG--------GCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCB
T ss_pred cccchhcccCeEECCCCCCCCCcc------cc--------cCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCC
Confidence 457788999999999999986432 56 789999999998 4455 68899999999999999977
Q ss_pred CCcccccccCcccchhccc
Q 038586 296 LPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~ 314 (353)
+|+ +..++.|+.|+..
T Consensus 366 l~~---l~~l~~L~~L~L~ 381 (384)
T d2omza2 366 LTP---LANLTRITQLGLN 381 (384)
T ss_dssp CGG---GTTCTTCSEEECC
T ss_pred Chh---hccCCCCCEeeCC
Confidence 776 6778888887753
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=3.6e-13 Score=125.19 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.++++|++++ ++++ .+. .+..+ ++| ++|++++|++++ +|+ ++++++|++|++++ ...+++ +
T Consensus 44 ~~l~~L~l~~--------~~I~-~l~-gl~~L-~nL--~~L~Ls~N~l~~--l~~-l~~L~~L~~L~L~~n~i~~i~~-l 106 (384)
T d2omza2 44 DQVTTLQADR--------LGIK-SID-GVEYL-NNL--TQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP-L 106 (384)
T ss_dssp TTCCEEECCS--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCEEECCC--------CCCC-Ccc-ccccC-CCC--CEEeCcCCcCCC--Ccc-ccCCcccccccccccccccccc-c
Confidence 3688899988 6765 343 46778 888 999999999888 553 88899999999988 545553 7
Q ss_pred CCCCCCCEEEccCcccce
Q 038586 150 PEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g 167 (353)
+++++|+.|++++|.+++
T Consensus 107 ~~l~~L~~L~~~~~~~~~ 124 (384)
T d2omza2 107 ANLTNLTGLTLFNNQITD 124 (384)
T ss_dssp TTCTTCCEEECCSSCCCC
T ss_pred cccccccccccccccccc
Confidence 888899999988777653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.48 E-value=5.6e-14 Score=119.45 Aligned_cols=121 Identities=8% Similarity=0.020 Sum_probs=95.9
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCC-CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEII-HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP-~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
++++.++++++. +|+.+. +++++|+|++ . +.++ ..|+++++|++|++++|++.+..+.. +..+..
T Consensus 11 ~~v~Cs~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-------~~~~~~ 79 (192)
T d1w8aa_ 11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------FEGASH 79 (192)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-------TTTCTT
T ss_pred CEEEEeCCCcCc--cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc-------cccccc
Confidence 778999999987 788764 6899999998 4 3343 45678999999999999988777766 777777
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccce
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEE 265 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~ 265 (353)
++++++++| ++++..|..|.++++|++|+|++|+|++..| ..+. .+++|++
T Consensus 80 -L~~L~Ls~N----------------~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~----~~f~--------~l~~L~~ 130 (192)
T d1w8aa_ 80 -IQELQLGEN----------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMP----GSFE--------HLNSLTS 130 (192)
T ss_dssp -CCEEECCSC----------------CCCEECSSSSTTCTTCCEEECCSSCCCEECT----TSST--------TCTTCCE
T ss_pred -cceeeeccc----------------cccccCHHHHhCCCcccccccCCccccccCH----HHhc--------CCccccc
Confidence 888999999 7776667788889999999999999988777 5666 6666666
Q ss_pred eecCC
Q 038586 266 ALLAQ 270 (353)
Q Consensus 266 L~L~~ 270 (353)
++|++
T Consensus 131 l~L~~ 135 (192)
T d1w8aa_ 131 LNLAS 135 (192)
T ss_dssp EECTT
T ss_pred ccccc
Confidence 66665
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=3.2e-13 Score=115.26 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=120.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ ++++ .++ .+..+ ++| ++|++++|++++ +++ ++++++|++|++++ ...+| .+
T Consensus 40 ~~l~~L~l~~--------~~i~-~l~-~l~~l-~nL--~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~-~l 102 (199)
T d2omxa2 40 DQVTTLQADR--------LGIK-SID-GVEYL-NNL--TQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT-PL 102 (199)
T ss_dssp TTCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cCCCEEECCC--------CCCC-Ccc-ccccC-CCc--CcCccccccccC--ccc-ccCCccccccccccccccccc-cc
Confidence 3688999999 7776 454 36778 999 999999999998 454 89999999999999 55555 48
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
.++++|++|++++|.+... +. ...+.. ++.+++++| ++.. + +.+..+++|++
T Consensus 103 ~~l~~L~~L~l~~~~~~~~-~~--------~~~l~~-L~~L~l~~n----------------~l~~-~-~~l~~~~~L~~ 154 (199)
T d2omxa2 103 ANLTNLTGLTLFNNQITDI-DP--------LKNLTN-LNRLELSSN----------------TISD-I-SALSGLTSLQQ 154 (199)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG--------GTTCTT-CSEEECCSS----------------CCCC-C-GGGTTCTTCSE
T ss_pred ccccccccccccccccccc-cc--------cchhhh-hHHhhhhhh----------------hhcc-c-ccccccccccc
Confidence 8999999999999987642 21 334555 888999999 5442 2 35778899999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEE
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEI 286 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L 286 (353)
|++++|++++ ++ .++ ++++|++|++++ ..+| .+..+++|++|
T Consensus 155 L~l~~n~l~~-l~-----~l~--------~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 155 LNFSSNQVTD-LK-----PLA--------NLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp EECCSSCCCC-CG-----GGT--------TCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred cccccccccC-Cc-----ccc--------CCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 9999999876 33 366 899999999998 4454 57888888876
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.36 E-value=2.3e-12 Score=111.89 Aligned_cols=173 Identities=8% Similarity=0.007 Sum_probs=132.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+++.+ .+..+ ..| ++|++++|.++. ++ .+..+++|++|++++ ...+++ +..+++|+++++++|.++
T Consensus 29 ~~~~d~~--~~~~l-~~L--~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~- 98 (227)
T d1h6ua2 29 SNVTDTV--TQADL-DGI--TTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK- 98 (227)
T ss_dssp SSTTSEE--CHHHH-HTC--CEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-
T ss_pred CCcCCcC--CHHHc-CCc--CEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccccc-
Confidence 6666554 35677 888 999999999987 64 589999999999999 444443 889999999999999876
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
.++. +..+.. ++.+.++.+ +..+ ...+...+.++.+.++.+.+....
T Consensus 99 ~i~~--------l~~l~~-L~~l~l~~~----------------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~------ 145 (227)
T d1h6ua2 99 NVSA--------IAGLQS-IKTLDLTST----------------QITD--VTPLAGLSNLQVLYLDLNQITNIS------ 145 (227)
T ss_dssp CCGG--------GTTCTT-CCEEECTTS----------------CCCC--CGGGTTCTTCCEEECCSSCCCCCG------
T ss_pred cccc--------cccccc-ccccccccc----------------cccc--cchhccccchhhhhchhhhhchhh------
Confidence 3332 344555 788888888 3332 234566788999999999886432
Q ss_pred ccchhhhhcccCCCccceeecCCCCC--chhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQQND--PIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~~~i--P~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.+. .+++|+.|++++..+ ...+..+++|++|++++|++..+|+ ++.+++|++|+...+
T Consensus 146 ~~~--------~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N 205 (227)
T d1h6ua2 146 PLA--------GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN 205 (227)
T ss_dssp GGG--------GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTS
T ss_pred hhc--------cccccccccccccccccchhhcccccceecccCCCccCCChh---hcCCCCCCEEECcCC
Confidence 345 788999999998222 3458899999999999999987876 788899999986544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3.4e-12 Score=100.63 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=52.1
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcccc
Q 038586 111 IWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAE 188 (353)
Q Consensus 111 ~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~ 188 (353)
+|||++|+++. +| .++++++|++|++++ ...+|+.++.+++|++|++++|.++ .+|. +..+.. ++
T Consensus 2 ~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~~--------~~~l~~-L~ 68 (124)
T d1dcea3 2 VLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG--------VANLPR-LQ 68 (124)
T ss_dssp EEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGG--------GTTCSS-CC
T ss_pred EEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc-ccCc--------cccccc-cC
Confidence 44555555543 33 244555555555555 4444444555555555555555554 2221 223333 55
Q ss_pred ceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 189 AVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.+++++|++++++ .+..+..+++|++|++++|++.+
T Consensus 69 ~L~l~~N~i~~~~---------------~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 69 ELLLCNNRLQQSA---------------AIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp EEECCSSCCCSSS---------------TTGGGGGCTTCCEEECTTSGGGG
T ss_pred eEECCCCccCCCC---------------CchhhcCCCCCCEEECCCCcCCc
Confidence 5555555222211 12356677888888888888864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.25 E-value=1.6e-10 Score=105.20 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=49.3
Q ss_pred CCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceec---CccccccCCC--------cCCCCccccceeccCCcCCC
Q 038586 133 KLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQIL---EKDQHDEGSQ--------NGQQGAEAEAVCIQHNQAND 199 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~l---p~~~~L~l~~--------~~~l~~~l~~l~l~~N~l~~ 199 (353)
+|++|++++ ...+|. ++++++|++|++++|.+.+.. +....+.+.. ...+.. ++.+.+++|+...
T Consensus 99 ~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~-l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 99 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPF-LTAIYADNNSLKK 176 (353)
T ss_dssp TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTT-CCEEECCSSCCSS
T ss_pred ccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhcccccccccccccccc-ceecccccccccc
Confidence 456666665 445553 456666666666666654321 1122222211 122222 4556666666555
Q ss_pred CCCCCCCC--ccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 200 IPCSSNNN--VQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 200 i~~~~~~~--l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
++...... +............+..++.|+.+++++|....
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (353)
T d1jl5a_ 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218 (353)
T ss_dssp CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 44322110 00000000122335667788888888776543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.6e-12 Score=105.24 Aligned_cols=126 Identities=10% Similarity=-0.084 Sum_probs=69.5
Q ss_pred CCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 129 GSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 129 ~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
.+..++++|+|++ ...+|..+..+++|++|++++|.++ .++. +..+.. ++++++++|
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~--------~~~l~~-L~~L~ls~N----------- 73 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG--------FPLLRR-LKTLLVNNN----------- 73 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECC--------CCCCSS-CCEEECCSS-----------
T ss_pred cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCC--------cccCcc-hhhhhcccc-----------
Confidence 3555566666666 5555544445566666666666555 2221 222333 455555555
Q ss_pred CccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCCCCC
Q 038586 207 NVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLDNIL 284 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~~L~ 284 (353)
+++...+..+..+++|++|++++|++. .++ ..+..+++|+
T Consensus 74 -----~i~~l~~~~~~~l~~L~~L~L~~N~i~---------------------------------~~~~l~~l~~l~~L~ 115 (162)
T d1a9na_ 74 -----RICRIGEGLDQALPDLTELILTNNSLV---------------------------------ELGDLDPLASLKSLT 115 (162)
T ss_dssp -----CCCEECSCHHHHCTTCCEEECCSCCCC---------------------------------CGGGGGGGGGCTTCC
T ss_pred -----cccCCCccccccccccccceecccccc---------------------------------ccccccccccccccc
Confidence 333322233344555555555555543 222 2456678889
Q ss_pred EEEccCCCCCCCCc--ccccccCcccchhcc
Q 038586 285 EIVESEVEIDSLPD--RLVFDVREFLSELDQ 313 (353)
Q Consensus 285 ~L~Ls~N~l~~iP~--~~~~~~l~~L~~Ld~ 313 (353)
+|++++|.+..+|. ...+..++.|+.||.
T Consensus 116 ~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 99999998866664 114666777777774
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=7.9e-12 Score=103.14 Aligned_cols=110 Identities=7% Similarity=-0.005 Sum_probs=80.3
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGS 178 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~ 178 (353)
.+. ..+ ++|||++|+|+. +|..+..+++|++|+|++ ...++ .+..+++|++|++++|+++...+..
T Consensus 15 ~n~-~~l--r~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~------ 82 (162)
T d1a9na_ 15 TNA-VRD--RELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL------ 82 (162)
T ss_dssp ECT-TSC--EEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCH------
T ss_pred cCc-CcC--cEEECCCCCCCc--cCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccc------
Confidence 345 567 888888888887 676667788888888888 55664 4788888999999999888544443
Q ss_pred CcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 179 QNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 179 ~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
...+.. ++.+++++|++++++ . ...+..+++|++|++++|+++.
T Consensus 83 -~~~l~~-L~~L~L~~N~i~~~~--------------~-l~~l~~l~~L~~L~l~~N~i~~ 126 (162)
T d1a9na_ 83 -DQALPD-LTELILTNNSLVELG--------------D-LDPLASLKSLTYLCILRNPVTN 126 (162)
T ss_dssp -HHHCTT-CCEEECCSCCCCCGG--------------G-GGGGGGCTTCCEEECCSSGGGG
T ss_pred -cccccc-cccceeccccccccc--------------c-ccccccccccchhhcCCCcccc
Confidence 344555 788888888443322 1 1357788999999999998864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=2.4e-11 Score=95.57 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=82.2
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYP 153 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~ 153 (353)
.|+|++ |+++ .++. +..+ ++| ++|++++|.++. +|+.++.+++|++|++++ ...+| .+++++
T Consensus 2 ~L~Ls~--------n~l~-~l~~-l~~l-~~L--~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~ 65 (124)
T d1dcea3 2 VLHLAH--------KDLT-VLCH-LEQL-LLV--THLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLP 65 (124)
T ss_dssp EEECTT--------SCCS-SCCC-GGGG-TTC--CEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred EEEcCC--------CCCC-CCcc-cccC-CCC--CEEECCCCccCc--chhhhhhhhcccccccccccccccC-cccccc
Confidence 478888 8887 6664 8889 999 999999999987 898899999999999999 66776 489999
Q ss_pred CCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCC
Q 038586 154 TLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND 199 (353)
Q Consensus 154 ~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~ 199 (353)
+|++|++++|++.. +|.. .....+.. ++.+++++|++++
T Consensus 66 ~L~~L~l~~N~i~~-~~~~-----~~l~~~~~-L~~L~l~~N~i~~ 104 (124)
T d1dcea3 66 RLQELLLCNNRLQQ-SAAI-----QPLVSCPR-LVLLNLQGNSLCQ 104 (124)
T ss_dssp SCCEEECCSSCCCS-SSTT-----GGGGGCTT-CCEEECTTSGGGG
T ss_pred ccCeEECCCCccCC-CCCc-----hhhcCCCC-CCEEECCCCcCCc
Confidence 99999999999883 3321 11445556 8899999995543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6e-11 Score=103.39 Aligned_cols=189 Identities=13% Similarity=0.070 Sum_probs=133.6
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC---CCCCCC-CCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH---QGEIIH-SVP 150 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~---~~~lP~-~l~ 150 (353)
.++.++ .+++ .+|+.+ . +.+ ++|++++|+++. +|. .|.++++|++|++++ ...+|. .+.
T Consensus 12 ~i~c~~--------~~l~-~iP~~l--~-~~l--~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~ 75 (242)
T d1xwdc1 12 VFLCQE--------SKVT-EIPSDL--P-RNA--IELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75 (242)
T ss_dssp EEEEES--------CSCS-SCCSCS--C-SCC--SEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred EEEEeC--------CCCC-CcCCCC--C-CCC--CEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeeccccc
Confidence 466667 6777 788654 2 678 999999999988 555 689999999999998 344544 567
Q ss_pred CCCCCCEEEccC-cccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 151 EYPTLFDVEGYM-ASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 151 ~L~~L~~L~Ls~-N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
++++++++++.. |++....+.. +..+.. ++.+++++|++..++ ....+..+..+..
T Consensus 76 ~l~~l~~l~~~~~n~l~~~~~~~-------~~~l~~-L~~l~l~~~~l~~~~---------------~~~~~~~l~~l~~ 132 (242)
T d1xwdc1 76 NLPKLHEIRIEKANNLLYINPEA-------FQNLPN-LQYLLISNTGIKHLP---------------DVHKIHSLQKVLL 132 (242)
T ss_dssp SCTTCCEEEEECCTTCCEECTTS-------EECCTT-CCEEEEESCCCCSCC---------------CCTTTCBSSCEEE
T ss_pred ccccccccccccccccccccccc-------cccccc-ccccccchhhhcccc---------------ccccccccccccc
Confidence 899999998764 6666555555 666777 899999999443322 1123345566666
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCC-CccceeecCC---CCCchhhcCCCCCCEE-EccCCCCCCCCccccccc
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQE-AVEEEALLAQ---QNDPIELLCLDNILEI-VESEVEIDSLPDRLVFDV 304 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l-~~L~~L~L~~---~~iP~~l~~l~~L~~L-~Ls~N~l~~iP~~~~~~~ 304 (353)
+...++++....+ ..+. .+ ..++.+++++ ..++.......+++++ ++++|++..+|+. .|..
T Consensus 133 ~~~~n~~l~~i~~----~~~~--------~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~-~f~~ 199 (242)
T d1xwdc1 133 DIQDNINIHTIER----NSFV--------GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND-VFHG 199 (242)
T ss_dssp EEESCTTCCEECT----TSST--------TSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTT-TTTT
T ss_pred ccccccccccccc----cccc--------cccccceeeecccccccccccccccchhhhccccccccccccccHH-HhcC
Confidence 7777777765444 3443 44 3688888877 5566666666776666 5678889999873 5899
Q ss_pred CcccchhccccC
Q 038586 305 REFLSELDQIAE 316 (353)
Q Consensus 305 l~~L~~Ld~~~~ 316 (353)
+++|+.||...+
T Consensus 200 l~~L~~L~Ls~N 211 (242)
T d1xwdc1 200 ASGPVILDISRT 211 (242)
T ss_dssp SCCCSEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 999999987544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.95 E-value=4.9e-12 Score=107.93 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=86.2
Q ss_pred cccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 95 TISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 95 ~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
.+|.++..+ ++| ++|+|++|+|+. ++ .+.++++|++|+|++ ...+|.....+++|++|++++|+++. ++.
T Consensus 39 ~l~~sl~~L-~~L--~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~~- 110 (198)
T d1m9la_ 39 KMDATLSTL-KAC--KHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LSG- 110 (198)
T ss_dssp CCHHHHHHT-TTC--CEEECSEEEESC--CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HHH-
T ss_pred hhhhHHhcc-ccc--ceeECcccCCCC--cc-cccCCccccChhhcccccccccccccccccccccccccccccc-ccc-
Confidence 677889999 999 999999999987 55 588899999999998 66777655556789999999998773 222
Q ss_pred ccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeC-CcchhccCCCCEEEcccCcCcccCC
Q 038586 173 QHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEM-EHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 173 ~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~-p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
+..+.. ++.+++++| +++... ...+..+++|++|++++|++....+
T Consensus 111 -------~~~l~~-L~~L~L~~N----------------~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 157 (198)
T d1m9la_ 111 -------IEKLVN-LRVLYMSNN----------------KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp -------HHHHHH-SSEEEESEE----------------ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred -------cccccc-ccccccccc----------------hhccccccccccCCCccceeecCCCccccCcc
Confidence 233444 778888888 443211 1357788888888888888765444
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.1e-10 Score=104.80 Aligned_cols=174 Identities=8% Similarity=0.086 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCCccccccCCccc-ccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCC----CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGT-ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGE----II 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~-lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~----lP 146 (353)
+++.+|+++ +.+.+. +..-+.++ ++| ++|+++++.++.. .+..++++++|++|++++ .+. +.
T Consensus 47 ~L~~LdLs~--------~~i~~~~l~~l~~~c-~~L--~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~ 114 (284)
T d2astb2 47 RVQHMDLSN--------SVIEVSTLHGILSQC-SKL--QNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQ 114 (284)
T ss_dssp CCCEEECTT--------CEECHHHHHHHHTTB-CCC--SEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred CCCEEECCC--------CccCHHHHHHHHHhC-CCc--ccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccc
Confidence 688999998 776644 34445677 999 9999999998876 778888999999999987 221 11
Q ss_pred CCCCCCCCCCEEEccCcc-cce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhc
Q 038586 147 HSVPEYPTLFDVEGYMAS-LVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSE 223 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~-l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~ 223 (353)
.-...+++|++|+++++. ++. .++.. .......++.+.+++... .++. .+..-..+
T Consensus 115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~--------------~i~~~~l~~l~~~ 173 (284)
T d2astb2 115 TLLSSCSRLDELNLSWCFDFTEKHVQVA-------VAHVSETITQLNLSGYRK--------------NLQKSDLSTLVRR 173 (284)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHH-------HHHSCTTCCEEECCSCGG--------------GSCHHHHHHHHHH
T ss_pred hhhHHHHhccccccccccccccccchhh-------hcccccccchhhhccccc--------------ccccccccccccc
Confidence 223468899999999853 331 11111 111111156666654300 1111 12233456
Q ss_pred cCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCCCccceeecCC-CCCc----hhhcCCCCCCEEEccCC
Q 038586 224 VYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ-QNDP----IELLCLDNILEIVESEV 291 (353)
Q Consensus 224 l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~iP----~~l~~l~~L~~L~Ls~N 291 (353)
+++|++|++++|. +++... ..++ ++++|++|++++ ..+. ..++.+++|++|+++++
T Consensus 174 ~~~L~~L~L~~~~~itd~~~----~~l~--------~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 174 CPNLVHLDLSDSVMLKNDCF----QEFF--------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCSEEECTTCTTCCGGGG----GGGG--------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccCCCchhh----hhhc--------ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 7889999998864 554444 5666 788999999988 3443 35677889999999887
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.92 E-value=1.5e-08 Score=91.86 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|||++ ++++ .+|+. + ++| ++|++++|+|+. +|+.+ .+|+.|++++ ...++. +
T Consensus 39 ~l~~LdLs~--------~~L~-~lp~~---~-~~L--~~L~Ls~N~l~~--lp~~~---~~L~~L~l~~n~l~~l~~-l- 96 (353)
T d1jl5a_ 39 QAHELELNN--------LGLS-SLPEL---P-PHL--ESLVASCNSLTE--LPELP---QSLKSLLVDNNNLKALSD-L- 96 (353)
T ss_dssp TCSEEECTT--------SCCS-CCCSC---C-TTC--SEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSCCCS-C-
T ss_pred CCCEEEeCC--------CCCC-CCCCC---C-CCC--CEEECCCCCCcc--cccch---hhhhhhhhhhcccchhhh-h-
Confidence 578999999 8987 68863 4 788 999999999996 78764 5789999998 445543 1
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC--CCccccceeeeCCcchhccCCCC
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN--NNVQTVEFEGEMEHSLSEVYDIF 228 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~--~~l~~~~l~g~~p~~l~~l~~L~ 228 (353)
.+.|++|++++|.+. .+|. .+.+.. ++.+++++|.+...+.... ..+.........+..+..++.++
T Consensus 97 -p~~L~~L~L~~n~l~-~lp~--------~~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~ 165 (353)
T d1jl5a_ 97 -PPLLEYLGVSNNQLE-KLPE--------LQNSSF-LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT 165 (353)
T ss_dssp -CTTCCEEECCSSCCS-SCCC--------CTTCTT-CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred -ccccccccccccccc-cccc--------hhhhcc-ceeeccccccccccccccccccchhhccccccccccccccccce
Confidence 146999999999987 5553 344555 8888888887776554321 11111222233445677888899
Q ss_pred EEEcccCcCcc
Q 038586 229 DVERYSSSLDQ 239 (353)
Q Consensus 229 ~L~Ls~N~l~g 239 (353)
.+++++|.+..
T Consensus 166 ~L~l~~n~~~~ 176 (353)
T d1jl5a_ 166 AIYADNNSLKK 176 (353)
T ss_dssp EEECCSSCCSS
T ss_pred ecccccccccc
Confidence 99999988764
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=9.1e-11 Score=105.37 Aligned_cols=171 Identities=11% Similarity=0.045 Sum_probs=98.1
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCc-ccce-ecCccccccCCC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMA-SLVQ-ILEKDQHDEGSQ 179 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N-~l~g-~lp~~~~L~l~~ 179 (353)
..| ++||++++.+++..++..+..+++|++|++++ ....+..++++++|++|+++++ .++. .+...
T Consensus 46 ~~L--~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l------- 116 (284)
T d2astb2 46 FRV--QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL------- 116 (284)
T ss_dssp BCC--CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-------
T ss_pred CCC--CEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchh-------
Confidence 455 66666666655431334455666666666666 2233444556666666666663 2321 01110
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhcc-CCCCEEEcccCc--Cccc-CCCCCccccchhhh
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEV-YDIFDVERYSSS--LDQI-LESERTEDHGDAAI 254 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l-~~L~~L~Ls~N~--l~g~-~p~~~~~~~~~~~~ 254 (353)
...... +++++++++. .++. .+...+... ++|+.|+++++. ++.. +. ....
T Consensus 117 ~~~~~~-L~~L~ls~c~---------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~----~l~~---- 172 (284)
T d2astb2 117 LSSCSR-LDELNLSWCF---------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----TLVR---- 172 (284)
T ss_dssp HHHCTT-CCEEECCCCT---------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----HHHH----
T ss_pred hHHHHh-cccccccccc---------------ccccccchhhhcccccccchhhhccccccccccccc----cccc----
Confidence 111223 5566665530 1211 122233333 689999998753 3211 11 1122
Q ss_pred hcccCCCccceeecCC-C----CCchhhcCCCCCCEEEccCC-CC-CCCCcccccccCcccchhccc
Q 038586 255 QNKQQEAVEEEALLAQ-Q----NDPIELLCLDNILEIVESEV-EI-DSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 255 ~~~~~l~~L~~L~L~~-~----~iP~~l~~l~~L~~L~Ls~N-~l-~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
.+++|++|++++ . ..+..+..+++|++|+++++ .+ +.-.. .+++++.|+.|+..
T Consensus 173 ----~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~--~L~~~~~L~~L~l~ 233 (284)
T d2astb2 173 ----RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL--ELGEIPTLKTLQVF 233 (284)
T ss_dssp ----HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG--GGGGCTTCCEEECT
T ss_pred ----ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH--HHhcCCCCCEEeee
Confidence 688999999987 2 34567888999999999995 56 44444 57788888888864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.87 E-value=1.4e-11 Score=105.08 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=74.6
Q ss_pred cEEEeecCC--CCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTIN--FGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~--l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
+.++++++. +.. +|..+..+++|++|+|++ ...++ .+..+++|++|++++|.++ .+|.. ......
T Consensus 26 ~~~~l~~~~~~i~~--l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~-------~~~~~~ 94 (198)
T d1m9la_ 26 EKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENL-------DAVADT 94 (198)
T ss_dssp SCEECCBCCTTCCC--CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC-SCSSH-------HHHHHH
T ss_pred ceeeeecccCchhh--hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccc-ccccc-------cccccc
Confidence 455555432 222 455566666666666666 44453 3566666666666666655 33333 222222
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccce
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEE 265 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~ 265 (353)
++.+++++| +++. + +.+..+++|++|++++|+++.
T Consensus 95 -L~~L~l~~N----------------~i~~-l-~~~~~l~~L~~L~L~~N~i~~-------------------------- 129 (198)
T d1m9la_ 95 -LEELWISYN----------------QIAS-L-SGIEKLVNLRVLYMSNNKITN-------------------------- 129 (198)
T ss_dssp -CCEEECSEE----------------ECCC-H-HHHHHHHHSSEEEESEEECCC--------------------------
T ss_pred -ccccccccc----------------cccc-c-ccccccccccccccccchhcc--------------------------
Confidence 455555555 3321 1 234455555555555555532
Q ss_pred eecCCCCCc--hhhcCCCCCCEEEccCCCC-CCCCcc--------cccccCcccchhcc
Q 038586 266 ALLAQQNDP--IELLCLDNILEIVESEVEI-DSLPDR--------LVFDVREFLSELDQ 313 (353)
Q Consensus 266 L~L~~~~iP--~~l~~l~~L~~L~Ls~N~l-~~iP~~--------~~~~~l~~L~~Ld~ 313 (353)
++ ..+..+++|+.|++++|++ ...+.. ..+..+++|+.||.
T Consensus 130 -------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~ 181 (198)
T d1m9la_ 130 -------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp -------HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred -------ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence 22 2466678888888888877 322220 01445666666664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=4.2e-09 Score=85.73 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=82.1
Q ss_pred eCCcchhccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCCCccceeecCC---CCC-chhhcCCCCCCEEEccC
Q 038586 216 EMEHSLSEVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND-PIELLCLDNILEIVESE 290 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i-P~~l~~l~~L~~L~Ls~ 290 (353)
..|..+..+++|++|++++|+ ++...+ ..|. ++++|+.|++++ ..| |..|..+++|++|+|++
T Consensus 22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~----~~f~--------~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 22 DSLHHLPGAENLTELYIENQQHLQHLEL----RDLR--------GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp TTTTTSCSCSCCSEEECCSCSSCCEECG----GGSC--------SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred cCcccccCccccCeeecCCCccccccCc----hhhc--------cccccCcceeeccccCCcccccccccccccceeccC
Confidence 456677788999999998764 876656 6777 899999999998 445 45688999999999999
Q ss_pred CCCCCCCcccccccCcccchhccccCCCccccccccccccc
Q 038586 291 VEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
|+|..+|. ..-....|+.|+...++..+.|+..+-..|.
T Consensus 90 N~l~~l~~--~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~ 128 (156)
T d2ifga3 90 NALESLSW--KTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128 (156)
T ss_dssp SCCSCCCS--TTTCSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred CCCcccCh--hhhccccccccccCCCcccCCchHHHHHHHH
Confidence 99999988 4333446889999999999999876666663
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.4e-08 Score=81.17 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=56.9
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcc-cceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMAS-LVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~-l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
.....+.++.++ ...+|..+..+++|+.|++++|+ ++..-+.. +..+.. ++.|++++|
T Consensus 6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-------f~~l~~-L~~L~Ls~N----------- 66 (156)
T d2ifga3 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD-------LRGLGE-LRNLTIVKS----------- 66 (156)
T ss_dssp CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG-------SCSCCC-CSEEECCSS-----------
T ss_pred CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchh-------hccccc-cCcceeecc-----------
Confidence 334455677766 56678888888888888887664 55333333 555556 777777777
Q ss_pred CccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 207 NVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
+++...|..|..+++|++|+|++|+|+.
T Consensus 67 -----~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 94 (156)
T d2ifga3 67 -----GLRFVAPDAFHFTPRLSRLNLSFNALES 94 (156)
T ss_dssp -----CCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred -----ccCCcccccccccccccceeccCCCCcc
Confidence 5555556667777777777777777763
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.43 E-value=7.9e-08 Score=87.69 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCCccccccCCccc----ccHHHHHhhccccccEEEeecCCCCCCC--CC-------cccCCCCCCcEEec
Q 038586 73 HFKVLNLRSSNDENARRKILKGT----ISSALLLCLNCMIYDIWTLVTINFGGIP--VP-------EFVGSLSKLSLNTV 139 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~----lp~~l~~L~~~L~~~~L~Ls~N~l~~~~--~P-------~~~~~L~~L~~L~L 139 (353)
.++.|+|++ |.+... +...+... +.| +.++++++...... .| ..+...++|+.|+|
T Consensus 32 ~l~~L~Ls~--------n~i~~~~~~~l~~~l~~~-~~L--~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 32 SVKEIVLSG--------NTIGTEAARWLSENIASK-KDL--EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp CCCEEECTT--------SEECHHHHHHHHHTTTTC-TTC--CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred CCCEEECcC--------CcCCHHHHHHHHHHHHhC-CCC--CEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 567777777 555322 22234445 667 77777766543210 11 12445677777777
Q ss_pred cC--CCC-----CCCCCCCCCCCCEEEccCcccc
Q 038586 140 DH--QGE-----IIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 140 s~--~~~-----lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
++ .+. +...+...++|++|++++|.+.
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 134 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred cccccccccccchhhhhcccccchheeccccccc
Confidence 76 222 2223345667777777777653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.41 E-value=5.8e-09 Score=95.50 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHhhccccccEEEeecCCCCCCC---CCcccCCCCCCcEEeccC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIP---VPEFVGSLSKLSLNTVDH 141 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~---~P~~~~~L~~L~~L~Ls~ 141 (353)
... ++| ++|+|++|.+.... +...+...++|++|++++
T Consensus 90 ~~~-~~L--~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 130 (344)
T d2ca6a1 90 LKC-PKL--HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130 (344)
T ss_dssp TTC-TTC--CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred hhC-CCc--ccccccccccccccccchhhhhcccccchheeccc
Confidence 334 567 77777777765531 122334566777777765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=3.2e-07 Score=85.46 Aligned_cols=104 Identities=10% Similarity=0.079 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCCccccccCCccc-ccHHHHHhhccccccEEEeecCCCCCC---CCCcccCCCCCCcEEeccC--CC---
Q 038586 73 HFKVLNLRSSNDENARRKILKGT-ISSALLLCLNCMIYDIWTLVTINFGGI---PVPEFVGSLSKLSLNTVDH--QG--- 143 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~-lp~~l~~L~~~L~~~~L~Ls~N~l~~~---~~P~~~~~L~~L~~L~Ls~--~~--- 143 (353)
+++.||+++ +++++. +..-+..+ +++ ++|+|++|.++.. .+...+..+++|++|+|++ .+
T Consensus 3 ~l~~ld~~~--------~~i~~~~~~~l~~~l-~~l--~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~ 71 (460)
T d1z7xw1 3 DIQSLDIQC--------EELSDARWAELLPLL-QQC--QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 71 (460)
T ss_dssp EEEEEEEES--------CCCCHHHHHHHHHHH-TTC--SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH
T ss_pred CCCEEEeeC--------CcCChHHHHHHHHhC-CCC--CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH
Confidence 688999999 888642 23445667 888 9999999988632 0344566788888888877 21
Q ss_pred --CCCCCCC-CCCCCCEEEccCccccee----cCccccccCCCcCCCCccccceeccCC
Q 038586 144 --EIIHSVP-EYPTLFDVEGYMASLVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 144 --~lP~~l~-~L~~L~~L~Ls~N~l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
.+...+. ..++|++|++++|.++.. ++.. +..... ++++++++|
T Consensus 72 ~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~-------l~~~~~-L~~L~L~~N 122 (460)
T d1z7xw1 72 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-------LRTLPT-LQELHLSDN 122 (460)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-------TTSCTT-CCEEECCSS
T ss_pred HHHHHHHHhcCCCCCCEEECCCCCccccccccccch-------hhcccc-ccccccccc
Confidence 1222332 234688888888877632 2222 333444 677777777
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.4e-06 Score=70.77 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=11.1
Q ss_pred CCCCCCCEEEccCcccc
Q 038586 150 PEYPTLFDVEGYMASLV 166 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~ 166 (353)
.++++|++|+|++|+++
T Consensus 62 ~~~~~L~~L~Ls~N~i~ 78 (162)
T d1koha1 62 ENIPELLSLNLSNNRLY 78 (162)
T ss_dssp HHCTTCCCCCCCSSCCC
T ss_pred HhCCCCCEeeCCCcccc
Confidence 34566777777777665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=2e-06 Score=79.97 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=42.3
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCCCCCCEEEccCCC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCLDNILEIVESEVE 292 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l~~L~~L~Ls~N~ 292 (353)
+...++|++|+|++|+++..-.......+. ...+.|+.|++++..+ +..+..+++|++|++++|+
T Consensus 336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~-------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 336 LAQNRFLLELQISNNRLEDAGVRELCQGLG-------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408 (460)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHT-------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cccccchhhhheeeecccCcccchhhhhhh-------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence 345568999999999885321100001111 1356688899988444 3345667889999999998
Q ss_pred CC
Q 038586 293 ID 294 (353)
Q Consensus 293 l~ 294 (353)
++
T Consensus 409 i~ 410 (460)
T d1z7xw1 409 LG 410 (460)
T ss_dssp CC
T ss_pred CC
Confidence 84
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=9e-06 Score=65.73 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=58.8
Q ss_pred CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEccCCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESEVE 292 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~N~ 292 (353)
++.....+++|++|+|++|+++..-+ ....+. .+++|+.|++++ ..+++ ......+|+.|++++|+
T Consensus 57 l~~~~~~~~~L~~L~Ls~N~i~~l~~--~~~~~~--------~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNNRLYRLDD--MSSIVQ--------KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSSCCCCCSG--GGTHHH--------HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred hHHHHHhCCCCCEeeCCCccccCCch--hHHHHh--------hCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence 34444578889999999999875322 002344 688899999998 44443 23344579999999999
Q ss_pred C-CCCCcc-----cccccCcccchhcccc
Q 038586 293 I-DSLPDR-----LVFDVREFLSELDQIA 315 (353)
Q Consensus 293 l-~~iP~~-----~~~~~l~~L~~Ld~~~ 315 (353)
+ ...... ..+..++.|+.||...
T Consensus 127 l~~~~~~~~~y~~~i~~~~P~L~~LDg~~ 155 (162)
T d1koha1 127 LSDTFRDQSTYISAIRERFPKLLRLDGHE 155 (162)
T ss_dssp TSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred cCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence 9 444431 1356677888887643
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.43 E-value=0.00069 Score=54.36 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=10.1
Q ss_pred hhccCCCCEEEcccCcCc
Q 038586 221 LSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~ 238 (353)
+...+.|++|++++|.++
T Consensus 68 L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 68 IETSPSLRVLNVESNFLT 85 (167)
T ss_dssp HHHCSSCCEEECCSSBCC
T ss_pred hhhcccccceeeehhhcc
Confidence 334455666666666554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.90 E-value=0.0047 Score=49.23 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=47.1
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCc--------hhhcCCCCCCEEEccC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--------IELLCLDNILEIVESE 290 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--------~~l~~l~~L~~L~Ls~ 290 (353)
..+...+.|++|++++|.+...........+. ..+.|++|++++..+. ..+...++|++|++++
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~--------~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIELIE--------TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 109 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--------HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHhhCCccceeeccccccchhHHHHHhhhhh--------hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence 34556678999999999885321100002223 5678999999983332 2455668899999999
Q ss_pred CCCCCCC
Q 038586 291 VEIDSLP 297 (353)
Q Consensus 291 N~l~~iP 297 (353)
|.+..+.
T Consensus 110 n~~~~~g 116 (167)
T d1pgva_ 110 QRQSVLG 116 (167)
T ss_dssp CSSCCCC
T ss_pred CcCCCcc
Confidence 9876554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.76 E-value=0.0028 Score=50.42 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=9.4
Q ss_pred hccCCCCEEEcccCcCc
Q 038586 222 SEVYDIFDVERYSSSLD 238 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~ 238 (353)
...+.++.+++++|.+.
T Consensus 71 ~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 71 KVNNTLKSLNVESNFIS 87 (166)
T ss_dssp HHCSSCCEEECCSSCCC
T ss_pred hhcccchhhhhcccccc
Confidence 34455666666666553
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=88.45 E-value=0.0055 Score=48.59 Aligned_cols=85 Identities=5% Similarity=-0.010 Sum_probs=49.9
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCC--------CchhhcCCCCCCEEEc--
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQN--------DPIELLCLDNILEIVE-- 288 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--------iP~~l~~l~~L~~L~L-- 288 (353)
..+...++|++|++++|.++...- ..++ ......++++.+++++.. +-..+...++|+.++|
T Consensus 40 ~al~~n~~L~~L~Ls~n~l~~~~~----~~L~----~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGTRSNDPVA----FALA----EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN 111 (166)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHH----HHHH----HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred HHHhcCCccCeeeccCCcccHHHH----HHHH----HHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence 445567889999999998753211 1121 111256788888888722 2234566788887655
Q ss_pred cCCCCCC-----CCcccccccCcccchhcc
Q 038586 289 SEVEIDS-----LPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 289 s~N~l~~-----iP~~~~~~~l~~L~~Ld~ 313 (353)
++|.++. +.+ .+...+.|+.|+.
T Consensus 112 ~~n~i~~~~~~~La~--~L~~n~~L~~L~l 139 (166)
T d1io0a_ 112 QSQPLGNNVEMEIAN--MLEKNTTLLKFGY 139 (166)
T ss_dssp CSSCCCHHHHHHHHH--HHHHCSSCCEEEC
T ss_pred CCCcCcHHHHHHHHH--HHHhCCCcCEEeC
Confidence 4666633 333 3445555666554
|