Citrus Sinensis ID: 038668

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MDNACRSSLVESPMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYDY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEcccc
Coil and Loop (DISEMBL)
mdnacrsslvespmgprsppaaaldlygkrrQMVKVQVLEREIGLLQEELKsvedvqpasicckevddfvgakpdplvamydy
Flexible Loop (DISEMBL)
mdnacrsslvespmgprsppAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCkevddfvgakpdplvamydy
Low Complexity Region (SEG)
MDNACRSSLVESPMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYDY
Disordered region (IsUnstruct)
***********************LDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAK**********
Disordered Region (DISOPRED)
******************************RQMVKVQVLEREIGLLQEELK**EDVQPASICCKEVDDFVGAKPDPLVAM***
Disordered Region (DISEMBL)
*******************PAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYDY
Disordered Region (DISPRO)
*****************SPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNACRSSLVESPMGPRSPPAAALDLYGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQPASICCKEVDDFVGAKPDPLVAMYDY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q6AWT8	251	Guanine nucleotide-bindin	yes	no	0.650	0.215	0.648	3e-12

>sp|Q6AWT8|GG3_ARATH Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana GN=GG3 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 42/54 (77%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          DLYGKRR+  +VQ+LEREIG L+ E+K +E VQPAS C KEV DFV A  DPL+
Sbjct: 43 DLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLI 96

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
356532778	217	PREDICTED: uncharacterized protein LOC10	0.771	0.294	0.609	2e-15
255550429	336	hypothetical protein RCOM_0711500 [Ricin	0.650	0.160	0.722	3e-15
357450039	250	hypothetical protein MTR_2g042200 [Medic	0.855	0.284	0.589	4e-15
356519808	158	PREDICTED: uncharacterized protein LOC10	0.855	0.449	0.597	6e-15
224069152	142	predicted protein [Populus trichocarpa]	0.650	0.380	0.722	6e-15
224141571	149	predicted protein [Populus trichocarpa]	0.746	0.416	0.636	8e-15
357479419	184	hypothetical protein MTR_4g125190 [Medic	0.650	0.293	0.703	1e-14
357514077	127	hypothetical protein MTR_8g021170 [Medic	0.819	0.535	0.594	2e-14
449488205	230	PREDICTED: guanine nucleotide-binding pr	0.686	0.247	0.649	5e-14
449446839	169	PREDICTED: guanine nucleotide-binding pr	0.686	0.337	0.649	6e-14

>gi|356532778|ref|XP_003534947.1| PREDICTED: uncharacterized protein LOC100817458 [Glycine max]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 49/64 (76%)

Query: 15 GPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP 74
           P++ P +  DLYGKRR+M K+Q+LEREI  L+EELKS E +QPAS CCKE+ DFV A  
Sbjct: 19 SPKAAPPSCPDLYGKRREMAKIQMLEREISFLEEELKSSEGLQPASRCCKEIADFVMANS 78

Query: 75 DPLV 78
          DPL+
Sbjct: 79 DPLL 82

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550429|ref|XP_002516265.1| hypothetical protein RCOM_0711500 [Ricinus communis] gi|223544751|gb|EEF46267.1| hypothetical protein RCOM_0711500 [Ricinus communis]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          DLYGKRR+M KVQ+LEREIG L+EELKSV+ +QPA+ CCKEV DFV A  DPL+
Sbjct: 31 DLYGKRREMAKVQMLEREIGFLEEELKSVQGLQPATRCCKEVSDFVVANSDPLI 84

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450039|ref|XP_003595296.1| hypothetical protein MTR_2g042200 [Medicago truncatula] gi|355484344|gb|AES65547.1| hypothetical protein MTR_2g042200 [Medicago truncatula]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 7  SSLVESPM-GPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKE 65
          S+++  P+  P++PP    DLYGKRR+M KVQ+LEREI  L+EELKS E  QPAS CCKE
Sbjct: 11 SNVMSLPLPSPKAPPEYP-DLYGKRREMAKVQMLEREISFLEEELKSSEGFQPASKCCKE 69

Query: 66 VDDFVGAKPDPLV 78
          + DFV A  DPL+
Sbjct: 70 IADFVMANSDPLL 82

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519808|ref|XP_003528561.1| PREDICTED: uncharacterized protein LOC100798914 [Glycine max]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 7  SSLVESPMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEV 66
          SS +E  M P+SP    +D +GKR+QMVK+QVLEREIGLLQ ELKS+E + PAS CCKE+
Sbjct: 14 SSSMEQVMRPKSPLPGLVDFHGKRKQMVKIQVLEREIGLLQ-ELKSLEGLNPASRCCKEL 72

Query: 67 DDFVGAKPDPLV 78
          D FV +  DP  
Sbjct: 73 DAFVDSVSDPFT 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069152|ref|XP_002326287.1| predicted protein [Populus trichocarpa] gi|222833480|gb|EEE71957.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          DLYGKRR+M KVQ+LEREIG L+EELKS++ +QPAS CCKEV DFV A  DPL+
Sbjct: 28 DLYGKRREMAKVQMLEREIGFLEEELKSLQGLQPASRCCKEVTDFVVANSDPLI 81

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141571|ref|XP_002324141.1| predicted protein [Populus trichocarpa] gi|222865575|gb|EEF02706.1| predicted protein [Populus trichocarpa]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 49/66 (74%), Gaps = 4/66 (6%)

Query: 13 PMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA 72
          P  PR  P    DLYGKRR+M KVQ+LEREIG L+EELKS++ +QPAS  CKEV DFV A
Sbjct: 16 PKSPREYP----DLYGKRREMAKVQMLEREIGFLEEELKSIQGLQPASTSCKEVTDFVMA 71

Query: 73 KPDPLV 78
            DPL+
Sbjct: 72 NSDPLI 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479419|ref|XP_003609995.1| hypothetical protein MTR_4g125190 [Medicago truncatula] gi|355511050|gb|AES92192.1| hypothetical protein MTR_4g125190 [Medicago truncatula]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          DLYGKRR+M KVQ+LEREIG L+EELKS+E +QPAS CCKE+ D+V A  DPL+
Sbjct: 29 DLYGKRREMAKVQMLEREIGFLEEELKSMEGLQPASKCCKEIADYVVANSDPLL 82

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514077|ref|XP_003627327.1| hypothetical protein MTR_8g021170 [Medicago truncatula] gi|355521349|gb|AET01803.1| hypothetical protein MTR_8g021170 [Medicago truncatula]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 3  NACRSSLVESP-MGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASI 61
          N+   SL   P M P+SP    +D +GKR+QMVK+QVLE+EIGLLQEELKS+E + PAS 
Sbjct: 6  NSSTVSLTSKPLMCPKSPLPGFVDFHGKRKQMVKIQVLEKEIGLLQEELKSLEGLHPASR 65

Query: 62 CCKEVDDFV 70
          CC E+D FV
Sbjct: 66 CCIELDAFV 74

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488205|ref|XP_004157967.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Cucumis sativus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81
          DLYGKRRQ  K+Q+L+REIG L+EELKS E +QPAS CCKEV D+V A  DP++  Y
Sbjct: 31 DLYGKRRQAAKLQMLDREIGFLEEELKSTEGLQPASKCCKEVADYVIANSDPMIPTY 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446839|ref|XP_004141178.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Cucumis sativus]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81
          DLYGKRRQ  K+Q+L+REIG L+EELKS E +QPAS CCKEV D+V A  DP++  Y
Sbjct: 29 DLYGKRRQAAKLQMLDREIGFLEEELKSTEGLQPASKCCKEVADYVIANSDPMIPTY 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:504954807	251	AGG3 "AT5G20635" [Arabidopsis	0.855	0.282	0.586	6e-16
TAIR|locus:1005471648	100	AGG2 "G-protein gamma subunit	0.662	0.55	0.436	1e-06
TAIR|locus:2087398	98	GG1 "Ggamma-subunit 1" [Arabid	0.638	0.540	0.339	0.0001
UNIPROTKB|Q6YXX9	150	OSJNBa0026E05.11-1 "Os02g01378	0.614	0.34	0.372	0.00027

TAIR|locus:504954807 AGG3 "AT5G20635" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 44/75 (58%), Positives = 52/75 (69%)

Query:     7 SSLVES---PMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICC 63
             SSL  S   P  P+SPP    DLYGKRR+  +VQ+LEREIG L+ E+K +E VQPAS C 
Sbjct:    23 SSLAPSSLPPPRPKSPPEYP-DLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCI 81

Query:    64 KEVDDFVGAKPDPLV 78
             KEV DFV A  DPL+
Sbjct:    82 KEVSDFVVANSDPLI 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0045095 "keratin filament" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:1005471648 AGG2 "G-protein gamma subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query:    24 LDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
             +D  GK R   +++ LE+E   L+EEL+ +E +  AS  CKE  D V +KPDPL+
Sbjct:    17 VDTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLL 71

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0018342 "protein prenylation" evidence=IMP

GO:0018345 "protein palmitoylation" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2087398 GG1 "Ggamma-subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query:    28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAM 80
             GK R + ++  +E+E+  L++ELK VE+    S  C+E+   +   PDPL+ +
Sbjct:    19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPL 71

GO:0005737 "cytoplasm" evidence=ISM

GO:0005525 "GTP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

UNIPROTKB|Q6YXX9 OSJNBa0026E05.11-1 "Os02g0137800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query:    28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
             GK R    +  L++E+  LQ+EL  +E ++PAS  C+ V      K DPL+
Sbjct:    65 GKHRLSAAIARLDQELQSLQDELNELETMEPASAACQGVITSTEGKSDPLL 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        83   0.00091  102 3  11 22  0.45    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  479 (51 KB)
  Total size of DFA:  90 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.14u 0.11s 12.25t   Elapsed:  00:00:01
  Total cpu time:  12.14u 0.11s 12.25t   Elapsed:  00:00:01
  Start:  Mon May 20 20:23:31 2013   End:  Mon May 20 20:23:32 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam00631	69	pfam00631, G-gamma, GGL domain	0.004

>gnl|CDD|216034 pfam00631, G-gamma, GGL domain

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 35 KVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFV--GAKPDPLV 78
              L+REI  L+EEL+   +    S  CKE+ D+    +  DPL+
Sbjct: 4  LKLRLKREIEQLKEELE--RERIKVSKACKELIDYCEQRSTKDPLL 47

G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta. All organisms that posses a G-beta possess a G-gamma. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PF00631	68	G-gamma: GGL domain; InterPro: IPR015898 This entr	99.32
cd00068	57	GGL G protein gamma subunit-like motifs, the alpha	97.56
smart00224	63	GGL G protein gamma subunit-like motifs.	96.81
KOG4119	71	consensus G protein gamma subunit [Signal transduc	95.82
PRK14011	144	prefoldin subunit alpha; Provisional	94.55
PRK01203	130	prefoldin subunit alpha; Provisional	91.88
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	90.62
PRK03947	140	prefoldin subunit alpha; Reviewed	88.59
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	88.54
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	87.76
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.55
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	86.76
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	83.62
PRK13130	56	H/ACA RNA-protein complex component Nop10p; Review	82.48
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	81.64
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	81.6
PF14389	88	Lzipper-MIP1: Leucine-zipper of ternary complex fa	80.29

>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide

Probab=99.32  E-value=8e-13  Score=82.24  Aligned_cols=47  Identities=34%  Similarity=0.549  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668           33 MVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY   81 (83)
Q Consensus        33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t   81 (83)
                      ++++.+|.+||.+|++||+. +++ ++|.||++|++|+++.+|||||..
T Consensus         1 ~~~~~~l~~ei~~L~~el~~-~r~-~vS~a~~~li~y~~~~~DPll~~~   47 (68)
T PF00631_consen    1 KQEKDQLKREIEQLRQELER-ERI-KVSKACKELIEYCESTPDPLLPGP   47 (68)
T ss_dssp             -THHHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHGTC-HHHHT-
T ss_pred             ChHHHHHHHHHHHHHHHHcc-cce-eHHHHHHHHHHHhcCCCCceeCCC
Confidence            35788999999999999999 999 999999999999999999999975

The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....

>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors

Probab=97.56  E-value=0.00013  Score=44.61  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccC--CCCCCcc
Q 038668           37 QVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAK--PDPLVAM   80 (83)
Q Consensus        37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~   80 (83)
                      +.+.+++.+|+.||.- + --++|.+|.+++.|++..  .||||+-
T Consensus         2 ~~~~~~veqLr~el~~-~-RikvS~a~~~l~~y~e~~~~~Dpll~g   45 (57)
T cd00068           2 DQLKKEVEQLRKELSR-E-RLKVSKAAAELLKYCEQNAENDPLLTG   45 (57)
T ss_pred             HHHHHHHHHHHHHHCC-c-hhhHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            4677888899988874 3 568999999999999999  9999974

>smart00224 GGL G protein gamma subunit-like motifs

Probab=96.81  E-value=0.0022  Score=39.87  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCCc
Q 038668           37 QVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLVA   79 (83)
Q Consensus        37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP   79 (83)
                      +.+.+++.+|+.||+- + --++|.+|.+++.|++  ..-||||.
T Consensus         2 ~~~~~~ve~Lr~el~~-~-RikvS~a~~~li~y~e~~~~~DP~l~   44 (63)
T smart00224        2 DQLRKEVEQLRKELSR-E-RIKVSKAAEELLAYCEQHAEEDPLLT   44 (63)
T ss_pred             hHHHHHHHHHHHHHCC-c-eehHHHHHHHHHHHHHcCCCCCCCcC
Confidence            5678899999999875 3 5689999999999999  66788884

>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]

Probab=95.82  E-value=0.016  Score=37.96  Aligned_cols=44  Identities=23%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCC--CCCCc
Q 038668           34 VKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP--DPLVA   79 (83)
Q Consensus        34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP   79 (83)
                      .++.++..++..|..|+. +| -.++|.+|+|+.+|+|...  |||+-
T Consensus         7 ~~~~q~k~~VeqLk~e~~-~~-R~~vS~a~~el~~y~E~~~~~DpLl~   52 (71)
T KOG4119|consen    7 SKKPQMKKEVEQLKLEAN-IE-RIKVSKAAAELLEYCETHATEDPLLE   52 (71)
T ss_pred             cchHHHHHHHHHHHHHHH-hh-HhhHHHHHHHHHHHHHhcCccCcccc
Confidence            345667777777777775 33 6789999999999999988  99973

>PRK14011 prefoldin subunit alpha; Provisional

Probab=94.55  E-value=0.065  Score=38.29  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCcccC
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYD   82 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~   82 (83)
                      ..++.+|+.+.+||..|+.+|..|.....=-..|+|.+..+....+=|+|.+-
T Consensus         6 q~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~   58 (144)
T PRK14011          6 QNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGP   58 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCC
Confidence            35778999999999999999999998877778899999988888888888763

>PRK01203 prefoldin subunit alpha; Provisional

Probab=91.88  E-value=0.29  Score=34.87  Aligned_cols=51  Identities=8%  Similarity=0.033  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCCccc
Q 038668           31 RQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLVAMY   81 (83)
Q Consensus        31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t   81 (83)
                      -.-++++.|++||..|+++|+.|.....=-..|+|.+....  ...+=|+|.|
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg   56 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIG   56 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEcc
Confidence            45689999999999999999999887776677888887764  4556677765

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=90.62  E-value=0.53  Score=31.19  Aligned_cols=50  Identities=14%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccC--CCCCCccc
Q 038668           32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAK--PDPLVAMY   81 (83)
Q Consensus        32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~t   81 (83)
                      +++.+++|.+++..|+..+.+|+..-+--..+++++.++..+  .+=|+|.+
T Consensus         4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg   55 (126)
T TIGR00293         4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVG   55 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcC
Confidence            567788888888888888888888888778889999999876  22355553

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=88.59  E-value=1.2  Score=30.20  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccC
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAK   73 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~   73 (83)
                      ..+++.++.|.++|..|+..+..|+..-+--..+++.+.++...
T Consensus         9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~   52 (140)
T PRK03947          9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK   52 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            35677888999999999999999998888888899999998853

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=88.54  E-value=0.92  Score=32.72  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCC---CCCCcc
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP---DPLVAM   80 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p---DPLLP~   80 (83)
                      .++.++++.|+++|..|+-++..|+-.-.-=+.|++-++++.+..   -=|+|+
T Consensus         9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpv   62 (145)
T COG1730           9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPV   62 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence            468899999999999999999999988888888999999988766   345554

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=87.76  E-value=2.1  Score=28.02  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668           28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP   76 (83)
Q Consensus        28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP   76 (83)
                      -+....++|..|..+|..|+.+...++..=.-...|++++..|-...+-
T Consensus        75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~e  123 (126)
T PF13863_consen   75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPE  123 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            3455677888888888888888888887777777899999888766654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.55  E-value=1.2  Score=31.10  Aligned_cols=39  Identities=26%  Similarity=0.269  Sum_probs=33.4

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 038668           21 AAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPA   59 (83)
Q Consensus        21 ~g~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~a   59 (83)
                      .+.+..----|+++.|.++|-|+..|++||..|+.....
T Consensus        10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~   48 (120)
T PF12325_consen   10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDE   48 (120)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677778899999999999999999999999876543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=86.76  E-value=1.3  Score=26.33  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668           28 GKRRQMVKVQVLEREIGLLQEELKSV   53 (83)
Q Consensus        28 GkhR~~ael~~LeqEi~fLeeEL~~L   53 (83)
                      ...|...+++++++++.-+|.|+++|
T Consensus        42 ~~~~~r~~~~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   42 SRLRLRRRIRRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34677788999999999999998875

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=83.62  E-value=1.8  Score=26.52  Aligned_cols=24  Identities=25%  Similarity=0.482  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668           32 QMVKVQVLEREIGLLQEELKSVED   55 (83)
Q Consensus        32 ~~ael~~LeqEi~fLeeEL~~LE~   55 (83)
                      +.+++.+|+.++.-++.++..+++
T Consensus         2 ~~~E~~rL~Kel~kl~~~i~~~~~   25 (66)
T PF10458_consen    2 VEAEIERLEKELEKLEKEIERLEK   25 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357888999999999988888775

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed

Probab=82.48  E-value=1.5  Score=27.38  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=17.4

Q ss_pred             cccCCCCCCCCCCCCCCCCCcchhHHHHHHHH
Q 038668            5 CRSSLVESPMGPRSPPAAALDLYGKRRQMVKV   36 (83)
Q Consensus         5 ~~sS~~~~~p~pksPp~g~~D~~GkhR~~ael   36 (83)
                      ||+...-+.|.+=|    +-|.+||+|+..+-
T Consensus        23 CG~~t~~~~P~rfS----p~D~y~~yR~~~kk   50 (56)
T PRK13130         23 CGGKTKNPHPPRFS----PEDKYGKYRRALKK   50 (56)
T ss_pred             CCCCCCCCCCCCCC----CCCccHHHHHHHHH
Confidence            55544444444333    34999999997763

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=81.64  E-value=4  Score=24.01  Aligned_cols=28  Identities=25%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668           27 YGKRRQMVKVQVLEREIGLLQEELKSVE   54 (83)
Q Consensus        27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE   54 (83)
                      +.|.|....+..|++++.+|+.|...|.
T Consensus        18 r~R~rkk~~~~~le~~~~~L~~en~~L~   45 (54)
T PF07716_consen   18 RSRQRKKQREEELEQEVQELEEENEQLR   45 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777788888888887777774

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=81.60  E-value=2.6  Score=27.89  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVE   54 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE   54 (83)
                      |-++-+-.+|.+||+-||.||+++-
T Consensus         3 ~ei~eEn~~Lk~eiqkle~ELq~~~   27 (76)
T PF07334_consen    3 HEIQEENARLKEEIQKLEAELQQNK   27 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999998753

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1

Probab=80.29  E-value=4.3  Score=26.57  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668           29 KRRQMVKVQVLEREIGLLQEELKSVE   54 (83)
Q Consensus        29 khR~~ael~~LeqEi~fLeeEL~~LE   54 (83)
                      -.-+.++|..||-||..||..+.+|-
T Consensus        56 ~keLL~EIA~lE~eV~~LE~~v~~L~   81 (88)
T PF14389_consen   56 AKELLEEIALLEAEVAKLEQKVLSLY   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
1got_G	73	GT-gamma; complex (GTP-binding/transducer), G prot	96.41
3v5w_G	77	G gamma-I, guanine nucleotide-binding protein G(I)	91.19
4dac_A	28	Computationally designed crystal forming protein;	88.77
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	88.0
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	87.83
2wg5_A	109	General control protein GCN4, proteasome-activatin	87.13
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	82.67
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	82.36
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	81.43
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	81.02
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	80.15

>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*

Probab=96.41  E-value=0.0012  Score=41.98  Aligned_cols=52  Identities=29%  Similarity=0.474  Sum_probs=39.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCCcc
Q 038668           27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLVAM   80 (83)
Q Consensus        27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~   80 (83)
                      .---+-++.+.+|.+++.+|+.||. ++. -++|.+|.+++.|++  +.-||||+-
T Consensus        10 ~~~~~~~~~~~~lr~~veqLr~el~-~~R-ikVS~aa~~L~~Yce~~~~~DpLl~g   63 (73)
T 1got_G           10 VINIEDLTEKDKLKMEVDQLKKEVT-LER-MLVSKCCEEFRDYVEERSGEDPLVKG   63 (73)
T ss_dssp             ------CTHHHHHHHHHHHHHHHTT-CCC-CCHHHHHHHHHHHHHHHGGGCHHHHC
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHC-Cch-hhHHHHHHHHHHHHHhcCCCCCCcCC
Confidence            3334556789999999999999994 454 479999999999999  569999863

>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*

Probab=91.19  E-value=0.26  Score=31.81  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhcc--CCCCCCc
Q 038668           36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA--KPDPLVA   79 (83)
Q Consensus        36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP   79 (83)
                      |.+..+.+.-|.-|.. ++.+ ++|.+|+|+..|++.  ..||||-
T Consensus        15 i~q~rk~VeQLr~Ea~-i~Ri-kVSqaaadL~~yc~~~~~~DpLl~   58 (77)
T 3v5w_G           15 IAQARKLVEQLKMEAN-IDRI-KVSKAAADLMAYCEAHAKEDPLLT   58 (77)
T ss_dssp             HHHHHHHHHHHHHHHS-SCCC-CHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred             HHHHHHHHHHHHHHhc-cchh-hHHHHHHHHHHHHHhcCCCCCCcC
Confidence            4555555555555543 4443 699999999999987  7899984

>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}

Probab=88.77  E-value=0.46  Score=25.65  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 038668           31 RQMVKVQVLEREIGLLQEELKSV   53 (83)
Q Consensus        31 R~~ael~~LeqEi~fLeeEL~~L   53 (83)
                      ++-|.+++||.|++-||.|...|
T Consensus         5 kldanvkrlekevgklegevarl   27 (28)
T 4dac_A            5 KLDANVKRLEKEVGKLEGEVARL   27 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             eccccHHHHHHHHhhhhhhhhhc
Confidence            56788999999999999887544

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=88.00  E-value=0.61  Score=30.26  Aligned_cols=43  Identities=7%  Similarity=0.171  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhcc
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA   72 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves   72 (83)
                      .++++.+++|++++..|+..+..|+...+--.-|+|.+..+..
T Consensus         4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~   46 (133)
T 1fxk_C            4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG   46 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4678889999999999999999999988888889999998874

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=87.83  E-value=0.63  Score=25.10  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVE   54 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE   54 (83)
                      +|+..+-.+|.|||.-||=|+.-||
T Consensus         3 rrlkqknarlkqeiaaleyeiaale   27 (28)
T 3ra3_B            3 RRLKQKNARLKQEIAALEYEIAALE   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            5777778899999999999988776

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A

Probab=87.13  E-value=0.67  Score=30.25  Aligned_cols=35  Identities=14%  Similarity=0.025  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHH
Q 038668           32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEV   66 (83)
Q Consensus        32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv   66 (83)
                      ++++++.|++|+..|++||+.|.+..-.-.-|-|+
T Consensus        12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~   46 (109)
T 2wg5_A           12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI   46 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence            67899999999999999999998865443334333

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=82.67  E-value=0.77  Score=26.57  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhc
Q 038668           33 MVKVQVLEREIGLLQEELKSVED   55 (83)
Q Consensus        33 ~ael~~LeqEi~fLeeEL~~LE~   55 (83)
                      ...|+.||++|..|+..|+.|+.
T Consensus        48 ~~~~~~Le~ri~~Le~~l~~l~~   70 (72)
T 2er8_A           48 RARNEAIEKRFKELTRTLTNLTS   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            36789999999999999998864

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=82.36  E-value=0.6  Score=36.93  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCC--CCCC
Q 038668           36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP--DPLV   78 (83)
Q Consensus        36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLL   78 (83)
                      +..+.+||.+|+-|| ..+.+ ++|.||.+++.+++...  ||||
T Consensus       221 ~~~~r~~veqLk~~l-~~~ri-kvS~~~e~l~~y~e~~~~~DPll  263 (424)
T 2pbi_A          221 VTAVRKEIMYYQQAL-MRSTV-KSSVSLGGIVKYSEQFSSNDAIM  263 (424)
T ss_dssp             HHHHHHHHHHHHHHH-HSCCC-CHHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHHHHHHHh-cccce-eHHHHHHHHHHHHHhhccCCCcc
Confidence            456788888999888 44444 69999999999998765  8886

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=81.43  E-value=2  Score=25.04  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDV   56 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~   56 (83)
                      -|+-+||..-+++|.-||.-|++||..
T Consensus        12 ~kVdrEI~Kte~kI~~lqkKlkeLee~   38 (42)
T 2l5g_B           12 DRVDREITMVEQQISKLKKKQQQLEEE   38 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467788888889999999988888753

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=81.02  E-value=1.5  Score=28.68  Aligned_cols=33  Identities=9%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 038668           27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPA   59 (83)
Q Consensus        27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~a   59 (83)
                      .-|.+++++|..|+++|.-....-+.|++|..|
T Consensus        15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v   47 (98)
T 2ke4_A           15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDV   47 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999898888888776

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=80.15  E-value=2.9  Score=24.53  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=23.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668           27 YGKRRQMVKVQVLEREIGLLQEELKSVE   54 (83)
Q Consensus        27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE   54 (83)
                      +.+.|.++-+..||.++..|+.|-..|.
T Consensus        15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~   42 (55)
T 1dh3_A           15 ESRRKKKEYVKSLENRVAVLENQNKTLI   42 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888889999999999998877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1gg2g_	54	Transducin (heterotrimeric G protein), gamma chain	95.78
d1tbge_	68	Transducin (heterotrimeric G protein), gamma chain	94.09
d1uk5a_	111	BAG-family molecular chaperone regulator-3 {Mouse	91.65
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	90.74
d1ivsa1	66	Valyl-tRNA synthetase (ValRS) C-terminal domain {T	80.93

>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.78  E-value=0.0067  Score=35.12  Aligned_cols=41  Identities=20%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCC
Q 038668           36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLV   78 (83)
Q Consensus        36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLL   78 (83)
                      |.++.++|..|+-|+. ++. -++|.+|.|++.|++  +.-||||
T Consensus         2 i~q~rk~VeqLr~e~~-~~R-ikvS~aa~~l~~y~e~~~~~Dpll   44 (54)
T d1gg2g_           2 IAQARKLVEQLKMEAN-IDR-IKVSKAAADLMAYCEAHAKEDPLL   44 (54)
T ss_dssp             HHHHHHHHHHHHHHHS-SCC-CCHHHHHHHHHHHHHHHGGGCTTT
T ss_pred             HHHHHHHHHHHHHHhC-Cch-hhHHHHHHHHHHHHHhcCcCCCCc
Confidence            5677788888888875 333 379999999999999  8899998

>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.09  E-value=0.0079  Score=36.56  Aligned_cols=40  Identities=38%  Similarity=0.699  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCC
Q 038668           37 QVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLV   78 (83)
Q Consensus        37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLL   78 (83)
                      .+|..++..|+-|+. ++.+ ++|.+|.|+..|++  +..||||
T Consensus        13 ~~lk~~VeQLr~Ea~-i~R~-~VS~aa~dl~~yce~~~~~DpLl   54 (68)
T d1tbge_          13 DKLKMEVDQLKKEVT-LERM-LVSKCCEEFRDYVEERSGEDPLV   54 (68)
T ss_dssp             HHHHHHHHHHHHHHT-CCCC-CHHHHHHHHHHHHHTTTTSCHHH
T ss_pred             HHHHHHHHHHHHHhc-Cchh-hHHHHHHHHHHHHHhcCCCCCcc
Confidence            334444444444432 4443 79999999999999  6789987

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.65  E-value=0.38  Score=30.73  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668           12 SPMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDV   56 (83)
Q Consensus        12 ~~p~pksPp~g~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~   56 (83)
                      .|+.+..|+....+.-.+|--..+|+.+..++..|+.+.+...|.
T Consensus         8 ~p~~~~~p~~~~~~~p~~~P~~~ki~~i~~~v~~L~~~V~~f~g~   52 (111)
T d1uk5a_           8 APAEPAAPKSGEAETPPKHPGVLKVEAILEKVQGLEQAVDSFEGK   52 (111)
T ss_dssp             CCCCCCCCCCCSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             CCCCCCCCCCcCcCCCCCCccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            333344444445566677777788888888888888888887763

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.74  E-value=0.27  Score=30.24  Aligned_cols=45  Identities=9%  Similarity=0.182  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCC
Q 038668           30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP   74 (83)
Q Consensus        30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p   74 (83)
                      +++.+.++.|+++|..|+.+++.|+..-.--..+++.+..+..+.
T Consensus         4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~   48 (133)
T d1fxkc_           4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKD   48 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            468899999999999999999999887777777788877776543

>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Valyl-tRNA synthetase (ValRS) C-terminal domain
domain: Valyl-tRNA synthetase (ValRS) C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.93  E-value=0.79  Score=25.72  Aligned_cols=23  Identities=9%  Similarity=-0.085  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhc
Q 038668           33 MVKVQVLEREIGLLQEELKSVED   55 (83)
Q Consensus        33 ~ael~~LeqEi~fLeeEL~~LE~   55 (83)
                      .+|+.+|+.++..|+.+++.+++
T Consensus         3 ~~E~~RL~K~l~kl~~~i~~~~~   25 (66)
T d1ivsa1           3 EEWRRRQEKRLKELLALAERSQR   25 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888877764