Citrus Sinensis ID: 038674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MAAHKNNDDATGSGQPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccEcHHHHHHccccc
Coil and Loop (DISEMBL)
maahknnddatgsgqpllsskpvdysnlnepmeqndkksllPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHqikgektngvlDSIYFCIVTMttvgygdlvphSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYenasagsvsAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCstittlgygdmsfstrggRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQltfsdleaadldhdklVSVAEFVIYKLKEMGKINEEDISVLMERFRtldadqsgnltTADIMLLQQSS
Flexible Loop (DISEMBL)
maahknnddatgsgqpllsskPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLeaadldhdklVSVAEFVIYKLkemgkineEDISVLMERFRtldadqsgnlttADIMLLQQSS
Low Complexity Region (SEG)
MAAHKNNDDATGSGQPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQvllllvgylgvgalCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQSS
Disordered region (IsUnstruct)
***************************************************EIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLD*******************
Disordered Region (DISOPRED)
***************************************************EIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYN*************VLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFS************VSVAEFVI***************VLMERFRTLDADQSGNLTTAD*ML*****
Disordered Region (DISEMBL)
**************QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQSS
Disordered Region (DISPRO)
*********************************************ALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAHKNNDDATGSGQPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q8LBL1	363	Two-pore potassium channe	yes	no	0.883	0.834	0.548	2e-98
Q850M0	347	Two pore potassium channe	yes	no	0.897	0.887	0.520	1e-82
Q8LIN5	349	Two pore potassium channe	no	no	0.895	0.879	0.489	1e-79
Q69TN4	456	Two pore potassium channe	no	no	0.827	0.622	0.348	5e-48
Q9S6Z8	408	Two-pore potassium channe	no	no	0.822	0.691	0.344	2e-46
Q9SVV6	436	Two-pore potassium channe	no	no	0.874	0.688	0.326	3e-46
Q9FL25	443	Two-pore potassium channe	no	no	0.912	0.706	0.308	5e-42
Q9FWX6	284	Two-pore potassium channe	no	no	0.696	0.841	0.315	3e-32
Q9XFR0	260	Potassium inward rectifie	no	no	0.463	0.611	0.347	1e-20
P40310	691	Outward-rectifier potassi	yes	no	0.551	0.273	0.242	6e-10

>sp|Q8LBL1|TPK1_ARATH Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 230/308 (74%), Gaps = 5/308 (1%)

Query: 36  DKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFC 95
           D+    P +  + S      R+V++ L  YL +G LCF+L+R QI G KT+GV+D++YFC
Sbjct: 57  DEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFC 116

Query: 96  IVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNY 155
           IVTMTTVGYGDLVP+S+ ++LLAC +VFSGM LVG +L +AADYLVEKQ+ LLV+A +  
Sbjct: 117 IVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLR 176

Query: 156 ENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVC 215
           +     S    ++LK++ T+K++YK      +L+VL I G +FL +VE +  + A YCVC
Sbjct: 177 Q-----SFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVC 231

Query: 216 STITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQ 275
           ST+TTLGYGD SF++  GR FAVFWIL+ +ICLAQFFLY+ EL T+++Q + VKWVLTR+
Sbjct: 232 STVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRR 291

Query: 276 LTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTAD 335
           +T +DLEAADLD D +V  AEF++YKLKEMGKI+E+DIS +M+ F  LD D+SG LTT+D
Sbjct: 292 ITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSD 351

Query: 336 IMLLQQSS 343
           I+L Q +S
Sbjct: 352 IVLAQTTS 359

Voltage-independent, large conductance and potassium-selective tonoplast ion channel. Regulated by cytoplasmic calcium and pH. Does not mediate slow-vacuolar (SV) ionic currents, but essential to establish VK currents. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+), Cs(+) or Li(+). Involved in intracellular K(+) redistribution and/or K(+) retranslocation between different tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q850M0|KCO1_ORYSJ Two pore potassium channel a OS=Oryza sativa subsp. japonica GN=TPKA PE=1 SV=1

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/313 (52%), Positives = 217/313 (69%), Gaps = 5/313 (1%)

Query: 30  EPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVL 89
           +P++   +K        L  +    FR V LLL  YL VG L F+ +  +I G++TN VL
Sbjct: 39  DPLQGPPEKGSSVKAKELFKEMRPSFRLVGLLLFIYLLVGVLAFYAVMDEISGKRTNRVL 98

Query: 90  DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLV 149
           D++YFC+VTMTTVGYGDLVP++   KLLAC +VF GMA+V L + K ADYLVEKQ++L  
Sbjct: 99  DALYFCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFF 158

Query: 150 KAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVD 209
           KA++   N   G     ++L+ +ET+++KYK  T   +L++ II+G VFL  VE L  VD
Sbjct: 159 KALHT--NLKGGE---TKMLRAIETNRIKYKFYTNALLLVLSIISGTVFLWKVEKLSLVD 213

Query: 210 ALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVK 269
           + YCVC+TITTLGYGD SFS++ GR FAVFWI++ TI +AQFF+YL E+YT+ RQ     
Sbjct: 214 SFYCVCATITTLGYGDKSFSSKLGRVFAVFWIITSTIIMAQFFMYLAEIYTERRQKMLAN 273

Query: 270 WVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSG 329
           WVLTR++T  DLEAADLD D+ V  AEFV+YKLKE+GKIN+E+IS  +E F  LD D SG
Sbjct: 274 WVLTRKMTKMDLEAADLDDDRQVGAAEFVVYKLKELGKINQEEISSFLEEFEKLDVDHSG 333

Query: 330 NLTTADIMLLQQS 342
            L+  D+ L Q +
Sbjct: 334 TLSPYDLTLAQSA 346

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LIN5|KCO2_ORYSJ Two pore potassium channel b OS=Oryza sativa subsp. japonica GN=TPKB PE=1 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/319 (48%), Positives = 210/319 (65%), Gaps = 12/319 (3%)

Query: 26  SNLNEPMEQ-NDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEK 84
           S+   P ++ N   +  P ++         FR V LLLV YL +G + F+L    + G +
Sbjct: 35  SSEPPPTDKDNSSAADAPPKTLFTGGGRPSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTR 94

Query: 85  TNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ 144
           T   LD++YFC+VTMTTVGYGDLVP S  AKLLAC +VF+G+A+VG  L KAADYLVEKQ
Sbjct: 95  TTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVGTFLSKAADYLVEKQ 154

Query: 145 QLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVED 204
           + LL +A++++            +++ +E +KV+YKL TA  +L+  + +G V L  VE 
Sbjct: 155 EALLFRALHSHT-----------MVRAMEMNKVRYKLYTAGLLLVAAVASGTVVLWKVEG 203

Query: 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264
           ++ VDA YCVC+T+TTLGYGD SFS+ GGR FAV WI   T+ +A FFLY  ELYT+ RQ
Sbjct: 204 MRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFLYAAELYTERRQ 263

Query: 265 NSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLD 324
               +WVL R+ T  DLEAADLD D  V  A+FV+YKLKE+GKI++EDIS  ++ F  LD
Sbjct: 264 RELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQEDISEFLDEFDNLD 323

Query: 325 ADQSGNLTTADIMLLQQSS 343
           AD SG L+ AD+   Q + 
Sbjct: 324 ADHSGTLSPADLAAAQPTP 342

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of protein storage vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69TN4|KCO3_ORYSJ Two pore potassium channel c OS=Oryza sativa subsp. japonica GN=TPKC PE=3 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 166/287 (57%), Gaps = 3/287 (1%)

Query: 57  QVLLLLVGYLGVGALCFFLIRHQIKGE--KTNGVLDSIYFCIVTMTTVGYGDLVPHSTLA 114
              L L+ YL +G   +  +          T+ V D++YFCIVT+ T+GYGD+ P +  A
Sbjct: 157 HAFLFLLAYLAMGVTFYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPATPAA 216

Query: 115 KLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVET 174
           KL +  +V  G   V ++L     Y+++ Q+ LL+ A+ N  +      +    LK    
Sbjct: 217 KLFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLITALKNPRSVRKHRHNYIFDLKKGRM 276

Query: 175 HKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGR 234
            +V+ K+  A  ++ + +  G   L  VE+L ++DA+Y    ++TT+GYGD +F T  GR
Sbjct: 277 -RVRMKVALALTVVAICVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLAGR 335

Query: 235 FFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSV 294
            FA  W+L  T+ +A+ FLYL E+    R  +   WVL+R +T S+  AAD+D++  V+ 
Sbjct: 336 LFASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANWVLSRDMTVSEFLAADIDNNGYVTK 395

Query: 295 AEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQ 341
           +EFV+YKLKEMGKI+E+DI ++ ++F+ +D+   G +T +D++   Q
Sbjct: 396 SEFVVYKLKEMGKISEKDIMMICDQFQRMDSGNCGKITLSDLLESHQ 442

Inward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S6Z8|TPK5_ARATH Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 167/287 (58%), Gaps = 5/287 (1%)

Query: 56  RQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAK 115
           RQ + LL+ YL +G   +   R    G +T+ V+D++YFCIVTM T+GYGD+ P +   K
Sbjct: 118 RQAIFLLIVYLTLGVSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTK 177

Query: 116 LLACVYVFSGMALVGLILGKAADYLVEKQQLLL---VKAMYNYENASAGSVSAAEVLKDV 172
           + A V+V  G   + ++L    +Y+++ Q+ ++   ++   ++++      SA + + D 
Sbjct: 178 IFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDF 237

Query: 173 ET--HKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFST 230
           E    +++ K+  A  ++++ I  G + L  VE+L FVD++Y    ++TT+GYGD +F T
Sbjct: 238 EKGRMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKT 297

Query: 231 RGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDK 290
             GR FA  W+L  T+ +A+ FLYL E     R    VK  L R++T  DL  AD     
Sbjct: 298 LQGRLFAAVWLLVSTLAVARAFLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHG 357

Query: 291 LVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
            +S +E+++ KLKEMGKI ++DI  ++ +F  LD +Q G +T  D++
Sbjct: 358 FISKSEYIVLKLKEMGKITQKDIDQVVIQFEKLDPNQIGKITLPDLL 404

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVV6|TPK3_ARATH Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 173/312 (55%), Gaps = 12/312 (3%)

Query: 26  SNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKT 85
           ++L+ P+ Q D     P E++         RQ   LLV YL +G L ++L R      +T
Sbjct: 131 NDLHHPIRQKD-----PTETS-----RSVVRQAFALLVVYLSLGVLIYWLNRDHYVVNQT 180

Query: 86  NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           + V+D +YFCIVTM T+GYGD+ P+S + KL + ++V  G   + ++L     Y+++ Q+
Sbjct: 181 HPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQE 240

Query: 146 LLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDL 205
             ++ +    +          +V K     +++ K+  A  ++++ I  G+  +  +E++
Sbjct: 241 SYMLDSAKRRDEPEKRRSYIIDVKKG--RMRIRLKVALALGVVVLCIAVGVGIMHFIEEI 298

Query: 206 KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
            ++D+ Y    ++TT+GYGD +F T  GR FA  W+L  T+ +A+ FLYL E     R  
Sbjct: 299 GWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEARVDKRNR 358

Query: 266 SFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDA 325
              K VL   ++ S   AAD+D++  VS AE+VIYKLKEM KI ++DI  + ++F  LD 
Sbjct: 359 ERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPISKQFDKLDR 418

Query: 326 DQSGNLTTADIM 337
             +G +T  D++
Sbjct: 419 CSNGKITLLDLL 430

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL25|TPK2_ARATH Two-pore potassium channel 2 OS=Arabidopsis thaliana GN=TPK2 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 180/347 (51%), Gaps = 34/347 (9%)

Query: 11  TGSGQPLLSSKPV----------------DYSNLNEPM--EQNDKKSLLPLESALMSQEE 52
           T   +P+  SKP                 + S+ N+P   +Q+D K+++           
Sbjct: 98  TEPNKPVRKSKPTINFHRSKTAPAMAAINNISHPNDPKTDQQSDSKTIV----------- 146

Query: 53  IRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHST 112
               Q + LLV YL +G L ++L R     ++T+ V+D++YFCIVTM T+GYGD+ P S 
Sbjct: 147 ---NQAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSV 203

Query: 113 LAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDV 172
           + KL +  +V  G   + ++L     Y+++ Q+  +++   N              + DV
Sbjct: 204 VTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDV 263

Query: 173 ETHKVKYKL-VTATFILLVLIIA-GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFST 230
           +  +++ +L V     ++VL +  G++ +  VE + ++D+ Y    ++TT+GYGD +F+T
Sbjct: 264 KKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNT 323

Query: 231 RGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDK 290
             GR  A  W+L  T+ +A+  L+L E     R     K VL   ++ S    AD+D + 
Sbjct: 324 LAGRLLAAMWLLVSTLAVARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADIDCNG 383

Query: 291 LVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
            VS AEFVIYKLK+M KI E+DI+ +  +F  LD   SG +T  D++
Sbjct: 384 CVSKAEFVIYKLKKMDKITEKDINPIGFQFDKLDRTNSGRITLLDLL 430

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX6|TPK4_ARATH Two-pore potassium channel 4 OS=Arabidopsis thaliana GN=TPK4 PE=2 SV=2

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 144/266 (54%), Gaps = 27/266 (10%)

Query: 59  LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLA 118
           ++LL+ YL  G   +   R Q  G +TN  +D+ YF IVT +TVGYGD+VP ++  K+L 
Sbjct: 39  MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILT 98

Query: 119 CVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVK 178
            V V +G+  +  +L +   +++  Q+     A+ +  N +        + +D +  ++K
Sbjct: 99  IVLVSTGVVFLDYLLNRVVSHVLSLQE----NAILDRINKTRNRAIRDHIAEDGKI-RLK 153

Query: 179 YKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
           +KL  A   + + + +G +FL V E L ++D++Y    ++TT+GYGD +F T  GR FAV
Sbjct: 154 WKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAV 213

Query: 239 FWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV 298
           FW+L  TI +A  FLYL E+                + T   L  ++         +EF+
Sbjct: 214 FWLLLSTIAMATLFLYLAEMRID-------------RTTVMKLPPSE---------SEFI 251

Query: 299 IYKLKEMGKINEEDISVLMERFRTLD 324
           ++KL+E G+I+E+DI  ++  F  L+
Sbjct: 252 VFKLRESGRISEDDIKQIVREFENLE 277

Voltage-independent, instantaneously activating, potassium-selective plasma membrane ion channel. Open rectifier. Regulated by cytoplasmic pH and extra-cellular calcium. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+) or Li(+).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFR0|KCO3_ARATH Potassium inward rectifier (Kir)-like channel 3 OS=Arabidopsis thaliana GN=KCO3 PE=1 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 173 ETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRG 232
           +TH V   L        V+   G + +  V  + ++D+       +TT+G+GD +F+T  
Sbjct: 96  QTHPVAVALY-----FFVVTFCGFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWL 150

Query: 233 GRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLV 292
           G F A  W+L  T+ +A+ FL+L +     R     K VL   ++ S   AAD+D+D  +
Sbjct: 151 GTFLAAVWLLVSTLAVARAFLFLADARADKRNRERAKKVLGESISISQFFAADIDNDGRL 210

Query: 293 SVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
           S+AEF IYKLK+M KI +ED   +  +F  LD  QSG +T  D+
Sbjct: 211 SLAEFAIYKLKQMEKITQEDFIQICNQFDKLDRTQSGRITLVDL 254

Probable calcium-activated potassium channel.

Arabidopsis thaliana (taxid: 3702)

>sp|P40310|TOK1_YEAST Outward-rectifier potassium channel TOK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOK1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 30/219 (13%)

Query: 39  SLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVT 98
           +LLP E ++M+          +LL  +L  GA  F  + H   G       +++YFC V+
Sbjct: 240 NLLPNERSIMAYT--------VLLSLWLIWGAGMFSGLLHITYG-------NALYFCTVS 284

Query: 99  MTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL---------GKAADYLVEKQQLLLV 149
           + TVG GD++P S  AK++  ++  SG+ L+GLI+              +   + +    
Sbjct: 285 LLTVGLGDILPKSVGAKIMVLIFSLSGVVLMGLIVFMTRSIIQKSSGPIFFFHRVEKGRS 344

Query: 150 KAMYNYENASAG-----SVSAAEVLKDVETHKVKYKLVTATF-ILLVLIIAGIVFLSVVE 203
           K+  +Y ++S       +    + ++   + K  +  ++ T  I +   + G +     E
Sbjct: 345 KSWKHYMDSSKNLSEREAFDLMKCIRQTASRKQHWFSLSVTIAIFMAFWLLGALVFKFAE 404

Query: 204 DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWIL 242
           +  + + +Y     + T+GYGD +  T  GR F V W L
Sbjct: 405 NWSYFNCIYFCFLCLLTIGYGDYAPRTGAGRAFFVIWAL 443

Outwardly rectifying potassium channel.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
449492865	342	PREDICTED: two-pore potassium channel 1-	0.921	0.923	0.596	1e-110
449443674	342	PREDICTED: two-pore potassium channel 1-	0.921	0.923	0.596	1e-110
359495641	347	PREDICTED: calcium-activated outward-rec	0.947	0.936	0.607	1e-109
359495639	347	PREDICTED: calcium-activated outward-rec	0.944	0.933	0.614	1e-108
9739011	348	outward-rectifying potassium channel KCO	0.935	0.922	0.569	1e-108
388512299	353	unknown [Medicago truncatula]	0.892	0.866	0.626	1e-105
356501636	349	PREDICTED: calcium-activated outward-rec	0.935	0.919	0.588	1e-104
224139468	318	outward rectifying potassium channel [Po	0.915	0.987	0.582	1e-104
255563784	402	Calcium-activated outward-rectifying pot	0.947	0.808	0.583	1e-103
154425489	349	potassium channel [Nicotiana tabacum]	0.895	0.879	0.585	1e-103

>gi|449492865|ref|XP_004159125.1| PREDICTED: two-pore potassium channel 1-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/330 (59%), Positives = 249/330 (75%), Gaps = 14/330 (4%)

Query: 15  QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQE-----EIRFRQVLLLLVGYLGVG 69
             LL  K   + + +  +E N++    P    ++S +     ++ FR+V +LL  YLG G
Sbjct: 21  NSLLRRKSNRHGSFSHSVENNNQ----PQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGG 76

Query: 70  ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
             CFFL+R QI G+KTNGV+DSIYFC+VTMTTVGYGDLVP S +AKLLACVYVF+GM L 
Sbjct: 77  TFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLG 136

Query: 130 GLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILL 189
           G+IL KAADY+VEKQ++LLVKAM          +S++E+L++ E +K+KYK +    +L 
Sbjct: 137 GMILSKAADYIVEKQEILLVKAM-----CMRKKISSSEILQESEANKLKYKFIMTGILLW 191

Query: 190 VLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLA 249
            LI+ GI+FL+VVE+L+F DA YCVCSTITTLGYGD SFST  GR FAV WI+SGTICLA
Sbjct: 192 ALIVVGILFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLA 251

Query: 250 QFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKIN 309
           QFFLYL ELYT+ RQ S V WVL+R LT+SDLE ADLDHDK+VS AEFVIYKLKEMGKIN
Sbjct: 252 QFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKIN 311

Query: 310 EEDISVLMERFRTLDADQSGNLTTADIMLL 339
           +ED+S +++ F+ LD DQSG LT ADI+++
Sbjct: 312 QEDVSPILDTFKKLDIDQSGCLTEADIVVI 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443674|ref|XP_004139602.1| PREDICTED: two-pore potassium channel 1-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/330 (59%), Positives = 249/330 (75%), Gaps = 14/330 (4%)

Query: 15  QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQE-----EIRFRQVLLLLVGYLGVG 69
             LL  K   + + +  +E N++    P    ++S +     ++ FR+V +LL  YLG G
Sbjct: 21  NSLLRRKSNRHGSFSHSVENNNQ----PQNYDVVSHQRIAVSQVSFRKVFVLLATYLGGG 76

Query: 70  ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
             CFFL+R QI G+KTNGV+DSIYFC+VTMTTVGYGDLVP S +AKLLACVYVF+GM L 
Sbjct: 77  TFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPDSMVAKLLACVYVFTGMTLG 136

Query: 130 GLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILL 189
           G+IL KAADY+VEKQ++LLVKAM          +S++E+L++ E +K+KYK +    +L 
Sbjct: 137 GMILSKAADYIVEKQEILLVKAM-----CMRKKISSSEILQESEANKLKYKFIMTGILLW 191

Query: 190 VLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLA 249
            LI+ GI+FL+VVE+L+F DA YCVCSTITTLGYGD SFST  GR FAV WI+SGTICLA
Sbjct: 192 ALIVVGILFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLA 251

Query: 250 QFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKIN 309
           QFFLYL ELYT+ RQ S V WVL+R LT+SDLE ADLDHDK+VS AEFVIYKLKEMGKIN
Sbjct: 252 QFFLYLAELYTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKIN 311

Query: 310 EEDISVLMERFRTLDADQSGNLTTADIMLL 339
           +ED+S +++ F+ LD DQSG LT ADI+++
Sbjct: 312 QEDVSPILDTFKKLDIDQSGCLTEADIVVI 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495641|ref|XP_003635044.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Vitis vinifera] gi|297736715|emb|CBI25751.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/354 (60%), Positives = 256/354 (72%), Gaps = 29/354 (8%)

Query: 7   NDDATGSGQPLLSSKPVDYSNLNEPMEQNDKK--------------------SLLPLESA 46
           +D+A  S    L S+ VD S+LNE      +K                      LP   +
Sbjct: 3   DDNAKQS----LLSETVDPSHLNESNALKRRKIRRCGSAPLSVMNCSGHNGIGSLPHLKS 58

Query: 47  LMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGD 106
           +  + E  F+QV +LL  YL VG LCF+LIR QIKG KTNGVLD++YFC+VTMTTVGYGD
Sbjct: 59  MFVKLEPSFKQVFILLAAYLAVGTLCFYLIRDQIKGRKTNGVLDAVYFCVVTMTTVGYGD 118

Query: 107 LVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAA 166
           LVP + LAKLLACV+VFSGMAL GLIL +AADY+VEKQ++LLVKAM+ +E A       A
Sbjct: 119 LVPDTILAKLLACVFVFSGMALGGLILSRAADYIVEKQEVLLVKAMHRHEKAGP-----A 173

Query: 167 EVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDM 226
           E+LKDVET+KVKYK   A  +LLVLII G + LS+VE L F+DA YCVC T+TTLGYGD 
Sbjct: 174 EILKDVETNKVKYKFFLALILLLVLIIVGTLLLSLVEKLSFIDAFYCVCVTVTTLGYGDE 233

Query: 227 SFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADL 286
           SFST  GR FAVFWILS TICLAQFFLYL ELYT+ RQ S VKWVLTR++TFSDLE ADL
Sbjct: 234 SFSTGVGRAFAVFWILSSTICLAQFFLYLAELYTEGRQRSLVKWVLTRKMTFSDLEGADL 293

Query: 287 DHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQ 340
           DHD+ V  AEF++YKLKEMGKI++EDI + MERF+ LD D SG LT A++ML Q
Sbjct: 294 DHDQAVCAAEFILYKLKEMGKISQEDILLWMERFKDLDVDGSGTLTRANLMLSQ 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495639|ref|XP_003635043.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Vitis vinifera] gi|297736711|emb|CBI25747.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/355 (61%), Positives = 258/355 (72%), Gaps = 31/355 (8%)

Query: 7   NDDATGSGQPLLSSKPVDYSNLNE---------------PME------QNDKKSLLPLES 45
           +DDA  S    L S+ VD S+LNE               P+       +N   SL  LES
Sbjct: 3   DDDAKQS----LLSETVDSSHLNEINALKRRKIYRCGSAPLSVMNCSGRNGIGSLPHLES 58

Query: 46  ALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYG 105
             +  E   F+QV +LL  YL VG LCF+LIR QIKG KTNGVLD++YFC+VTMTTVGYG
Sbjct: 59  MFVKLEP-SFKQVFILLAAYLAVGTLCFYLIRDQIKGRKTNGVLDAVYFCVVTMTTVGYG 117

Query: 106 DLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSA 165
           DLVP + LAKLLAC++VFSGM L GLIL +AADY+VEKQ++LLVKAM+ +E      V  
Sbjct: 118 DLVPDTILAKLLACLFVFSGMTLGGLILSRAADYIVEKQEVLLVKAMHRHEK-----VGP 172

Query: 166 AEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGD 225
           AE+LKDVET+KVKYK   A  +LLVLII G + LS+VE L F+DA YCVC T+TTLGYGD
Sbjct: 173 AEILKDVETNKVKYKFFLALTLLLVLIIVGTLLLSLVEKLSFIDAFYCVCVTVTTLGYGD 232

Query: 226 MSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAAD 285
            SFST  GR FAVFWILS TICLAQFFLYL ELYT+ RQ S VKWVLTR++TFSDLE AD
Sbjct: 233 ESFSTGVGRAFAVFWILSSTICLAQFFLYLAELYTEGRQRSLVKWVLTRKMTFSDLEGAD 292

Query: 286 LDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQ 340
           LDHD+ V  AEF++YKLKEMGKI++EDI + MERF+ LD D SG LT A++ML Q
Sbjct: 293 LDHDQAVCAAEFILYKLKEMGKISQEDILLWMERFKDLDVDGSGTLTRANLMLSQ 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9739011|gb|AAF97863.1| outward-rectifying potassium channel KCO1 [Eucalyptus camaldulensis]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/360 (56%), Positives = 257/360 (71%), Gaps = 39/360 (10%)

Query: 9   DATGSGQPLLSSKPVDYSNLNEPMEQNDKKSL----------LPLESALMSQEEIR---- 54
           DA G  QPLLS KP     LN P  Q DKK L           PL  A+  +  +     
Sbjct: 2   DANGVKQPLLS-KP-----LNSP--QTDKKELKRNRLRRCKSAPLAEAVPQEANLNGPVQ 53

Query: 55  ------------FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
                       F++V ++LV YLG+G +CF+L+R++I GEKTN + D++YFCIVTMTTV
Sbjct: 54  PSNSILRNLHPSFKRVAIILVFYLGIGTMCFYLVRNEIDGEKTNDLFDAVYFCIVTMTTV 113

Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGS 162
           GYGDLVP S L KLLAC +VFSGMA+VGLIL +AADYLVEKQ++LLVKA++         
Sbjct: 114 GYGDLVPGSALTKLLACAFVFSGMAIVGLILSRAADYLVEKQEILLVKALH-----LRNK 168

Query: 163 VSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLG 222
           V   E+LK++ET+ V+YK VTA  +LL+LI+AG  FL+++E+L  VDA YCVCSTITTLG
Sbjct: 169 VGPTEMLKEIETNGVRYKCVTAFILLLLLIVAGTTFLALIENLDIVDAFYCVCSTITTLG 228

Query: 223 YGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLE 282
           YGD SFST GGR FAVFWIL+ TICLAQFFLY+ EL T++RQ + VKWV +R++T  DLE
Sbjct: 229 YGDKSFSTEGGRIFAVFWILTSTICLAQFFLYIAELNTENRQRALVKWVPSRRMTNFDLE 288

Query: 283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
           AADLD+D +V  AEF+IYKLKEMGKIN+EDIS+++E F  LD DQSG L+ +DI L Q S
Sbjct: 289 AADLDNDGVVGAAEFIIYKLKEMGKINQEDISLILEEFDDLDVDQSGTLSGSDITLAQSS 348

Source: Eucalyptus camaldulensis

Species: Eucalyptus camaldulensis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512299|gb|AFK44211.1| unknown [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/313 (62%), Positives = 229/313 (73%), Gaps = 7/313 (2%)

Query: 26  SNLNEPMEQND--KKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGE 83
           +++N   EQN   +  L P       + E +FR V L L  YLG G LCF+L  +QI+G 
Sbjct: 40  TDINLQQEQNGVLQSPLSPQCITEKQEAEFKFRLVFLCLAAYLGTGTLCFYLTSYQIEGI 99

Query: 84  KTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK 143
           KTNG LD++YFC+VTMTTVGYGDLVP+ST+AKLLAC+YVF+GMAL GLIL KAADY+VEK
Sbjct: 100 KTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACIYVFTGMALGGLILSKAADYIVEK 159

Query: 144 QQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVE 203
           Q++ L ++M   EN         EV K++ T K KYK V A     VL+IAG VFL  +E
Sbjct: 160 QEIFLAESMCKAEN-----FGLQEVAKELGTKKSKYKFVLAVATFFVLMIAGTVFLYFIE 214

Query: 204 DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263
           +L FVDALYCVCST+TTLGYGD SFST  GR FAV WILS TICLAQ F YL ELYT+ R
Sbjct: 215 NLDFVDALYCVCSTVTTLGYGDKSFSTAAGRIFAVVWILSSTICLAQSFAYLAELYTEDR 274

Query: 264 QNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTL 323
           Q S  K VLTR+L+ SDLEAADLD DK VS AEFV+YKLKEMGKIN+EDIS +ME FR L
Sbjct: 275 QRSLAKMVLTRKLSLSDLEAADLDGDKAVSAAEFVVYKLKEMGKINQEDISAVMESFRKL 334

Query: 324 DADQSGNLTTADI 336
           D DQSG LT ADI
Sbjct: 335 DCDQSGTLTEADI 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501636|ref|XP_003519630.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/328 (58%), Positives = 246/328 (75%), Gaps = 7/328 (2%)

Query: 15  QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFF 74
           + LL S+   ++ L  P E N  +S+ P  +++       F+++ + L  YLGVGAL F+
Sbjct: 29  RRLLRSRSAPHAEL-VPTETNCNESI-PRTASIFQNLHPSFKRMAIYLAVYLGVGALIFY 86

Query: 75  LIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
           L+R+QIKG+KT+G+LD++YF IVTMTTVGYGDLVP+S LAKLLAC +VFSGMAL+GLI+ 
Sbjct: 87  LVRNQIKGQKTDGILDALYFTIVTMTTVGYGDLVPNSHLAKLLACAFVFSGMALIGLIVS 146

Query: 135 KAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIA 194
           KAADYLVEKQ+LLLVKAM  ++      + + E+L++VET+K +YKL     +LL+LII 
Sbjct: 147 KAADYLVEKQELLLVKAMRMHQK-----IGSTEILREVETNKTRYKLFLVFSLLLILIIV 201

Query: 195 GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY 254
           G +FL  VE L  +DA YCVCSTITTLGYGD SFST+ GR FAVFWIL+GTI LAQ F+Y
Sbjct: 202 GTIFLVTVEKLDVIDAFYCVCSTITTLGYGDQSFSTQAGRIFAVFWILTGTITLAQLFVY 261

Query: 255 LTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDIS 314
           + EL T+ RQ   VKWVLTR++T  DLEAADLD D  V  AEFVIYKLKEMGKI++EDIS
Sbjct: 262 IAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDIS 321

Query: 315 VLMERFRTLDADQSGNLTTADIMLLQQS 342
           ++M+ F  LD D SG L+T+DI L Q S
Sbjct: 322 LVMQEFEQLDVDDSGTLSTSDITLAQSS 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139468|ref|XP_002323126.1| outward rectifying potassium channel [Populus trichocarpa] gi|222867756|gb|EEF04887.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/338 (58%), Positives = 248/338 (73%), Gaps = 24/338 (7%)

Query: 7   NDDATGSGQPLLSSK--PVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVG 64
           +DDAT   Q LL  +   +      +PM  N+              ++  F++V L+L  
Sbjct: 3   SDDAT---QSLLRDEKNALQRRRFRQPMNVNN--------------QDCSFKKVFLVLAI 45

Query: 65  YLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFS 124
           YLGVG LC  L+ +QI+G+KTNG++D++YF +VTMTTVGYGDLVPH+TLAKLL+CVYVF+
Sbjct: 46  YLGVGTLCLSLVMNQIEGKKTNGIVDAVYFSVVTMTTVGYGDLVPHTTLAKLLSCVYVFA 105

Query: 125 GMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTA 184
           GMAL G+IL KAADY+VEKQ++LLV+AM+  E         +E+L++VETHKVKYK + A
Sbjct: 106 GMALGGIILSKAADYIVEKQEILLVRAMHMNEKTGL-----SEILEEVETHKVKYKFLLA 160

Query: 185 TFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
             +L +L+I G +FL +VE  +FVDA YCVCS+ITTLGYGD SFSTR GR FAVFWIL  
Sbjct: 161 LILLFLLMIVGTIFLYLVESFEFVDAFYCVCSSITTLGYGDDSFSTRAGRVFAVFWILCS 220

Query: 245 TICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKE 304
           TICLAQFFLYL ELYT+ RQ   VK VL R +T SDLE AD+DHDK VS AEF++Y LKE
Sbjct: 221 TICLAQFFLYLAELYTEKRQRLLVKRVLARNVTASDLEEADIDHDKTVSAAEFIVYTLKE 280

Query: 305 MGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
           MGKI++EDIS++MERFR LD DQSG LT +DI+  Q S
Sbjct: 281 MGKISQEDISLVMERFRKLDVDQSGTLTESDIIPSQSS 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563784|ref|XP_002522893.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis] gi|223537878|gb|EEF39493.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/353 (58%), Positives = 249/353 (70%), Gaps = 28/353 (7%)

Query: 12  GSGQPLLS------SKPVDYSNLNE----------------PMEQNDKKSLLPLESALMS 49
           GSG PLLS      S   D   L                  P + N  +SL   ES L+ 
Sbjct: 56  GSGDPLLSDMKDLSSNAYDKKTLQRRRFRQSINPHVLDVRYPEQDNSIQSLQWFES-LLE 114

Query: 50  QEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP 109
           +++  F+QV +    YLGVG LCFF + HQI G+KT G LD++YF +VTMTTVGYGDLVP
Sbjct: 115 KQKFSFKQVFISFAVYLGVGTLCFFFVMHQIDGKKTYGPLDAMYFSVVTMTTVGYGDLVP 174

Query: 110 HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVL 169
           HSTLAKLLACVYVF GMA VG+IL KAADYLVEKQ++LLV+ ++  E      + +AE+L
Sbjct: 175 HSTLAKLLACVYVFIGMAFVGIILSKAADYLVEKQEILLVRVIHMREK-----IGSAEIL 229

Query: 170 KDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFS 229
            + ETHKVKYK + AT +LLVLI+ G  FL VVE+   VDA YCV STI+TLGYGD SFS
Sbjct: 230 NEAETHKVKYKFLFATTLLLVLILVGTAFLCVVENFGLVDAFYCVFSTISTLGYGDESFS 289

Query: 230 TRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHD 289
           TR GR FAVFWILS TICLAQFFLYLTELYT++RQ   V+ VLTR +T SD+E+ADLDHD
Sbjct: 290 TRSGRLFAVFWILSSTICLAQFFLYLTELYTETRQRMLVRRVLTRTMTSSDIESADLDHD 349

Query: 290 KLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
           K+V+ AEF++Y LKEMGKI  EDI ++MERF+ LD D SG LT AD++  Q S
Sbjct: 350 KVVTPAEFILYTLKEMGKIEPEDILLVMERFKKLDVDHSGTLTEADLVQSQSS 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154425489|dbj|BAF74750.1| potassium channel [Nicotiana tabacum]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/314 (58%), Positives = 238/314 (75%), Gaps = 7/314 (2%)

Query: 31  PMEQNDKK--SLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGV 88
           P E ND K    LP   +++ +    FR+V+  LV YL +G +CF+ +++QI+G+K NGV
Sbjct: 41  PGEINDTKDNQSLPRSDSILDKLHPSFRKVMFYLVIYLAIGTMCFYFVQNQIEGKKVNGV 100

Query: 89  LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLL 148
           LDS+YFC+VTMTTVGYGDLVP ST +KLLA V+VFSGMALVGL+L + ADYLVEKQ+ LL
Sbjct: 101 LDSVYFCVVTMTTVGYGDLVPDSTTSKLLASVFVFSGMALVGLVLSEGADYLVEKQETLL 160

Query: 149 VKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFV 208
           +KAM+         VS +E+LK++ET+K++YK +  T  L+VL++ G VFL+ VE L  +
Sbjct: 161 IKAMHVRRK-----VSPSEILKEIETNKLRYKCLVTTVSLVVLMVVGTVFLAKVEKLSTI 215

Query: 209 DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFV 268
           DA YCVCSTITTLGYGD SFSTR GR FAVFWIL+ TICLAQFFLY+ E+ T+ R+   V
Sbjct: 216 DAFYCVCSTITTLGYGDKSFSTRAGRIFAVFWILTSTICLAQFFLYVAEVNTEKRRKELV 275

Query: 269 KWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQS 328
           + VLTR++T  DLE ADLD+D LV  AEFV+YKLKEMGKIN++D+S+L++ F  LD DQS
Sbjct: 276 QLVLTRRMTNVDLEEADLDNDGLVGAAEFVVYKLKEMGKINQDDVSLLLDEFENLDVDQS 335

Query: 329 GNLTTADIMLLQQS 342
           G L+T D+ L Q S
Sbjct: 336 GTLSTTDLTLAQSS 349

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2162162	363	KCO1 "CA2+ ACTIVATED OUTWARD R	0.778	0.735	0.584	1.8e-85
UNIPROTKB|Q850M0	347	TPKA "Two pore potassium chann	0.772	0.763	0.551	3e-78
UNIPROTKB|Q8LIN5	349	TPKB "Two pore potassium chann	0.749	0.736	0.529	6.1e-71
TAIR|locus:2141375	408	KCO5 "Ca2+ activated outward r	0.760	0.639	0.345	5.7e-43
TAIR|locus:2117681	436	KCO6 "Ca2+ activated outward r	0.874	0.688	0.307	3.6e-41
TAIR|locus:2170423	443	KCO2 "Ca2+ activated outward r	0.772	0.598	0.325	3.4e-38
TAIR|locus:2196155	284	TPK4 [Arabidopsis thaliana (ta	0.521	0.630	0.360	7.1e-34
TAIR|locus:2170413	260	KCO3 "AT5G46360" [Arabidopsis	0.451	0.596	0.348	2.1e-22
CGD|CAL0005819	741	TOK1 [Candida albicans (taxid:	0.653	0.302	0.254	3.9e-09
UNIPROTKB|Q59SJ7	741	TOK1 "Putative uncharacterized	0.653	0.302	0.254	3.9e-09

TAIR|locus:2162162 KCO1 "CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 159/272 (58%), Positives = 213/272 (78%)

Query:    72 CFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGL 131
             CF+L+R QI G KT+GV+D++YFCIVTMTTVGYGDLVP+S+ ++LLAC +VFSGM LVG 
Sbjct:    93 CFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGH 152

Query:   132 ILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVL 191
             +L +AADYLVEKQ+ LLV+A +  +     S    ++LK++ T+K++YK      +L+VL
Sbjct:   153 LLSRAADYLVEKQEALLVRAFHLRQ-----SFGPTDILKELHTNKLRYKCYATCLVLVVL 207

Query:   192 IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQF 251
              I G +FL +VE +  + A YCVCST+TTLGYGD SF++  GR FAVFWIL+ +ICLAQF
Sbjct:   208 FIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQF 267

Query:   252 FLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEE 311
             FLY+ EL T+++Q + VKWVLTR++T +DLEAADLD D +V  AEF++YKLKEMGKI+E+
Sbjct:   268 FLYVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEK 327

Query:   312 DISVLMERFRTLDADQSGNLTTADIMLLQQSS 343
             DIS +M+ F  LD D+SG LTT+DI+L Q +S
Sbjct:   328 DISGIMDEFEQLDYDESGTLTTSDIVLAQTTS 359

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005216 "ion channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

UNIPROTKB|Q850M0 TPKA "Two pore potassium channel a" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 149/270 (55%), Positives = 198/270 (73%)

Query:    73 FFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI 132
             F+ +  +I G++TN VLD++YFC+VTMTTVGYGDLVP++   KLLAC +VF GMA+V L 
Sbjct:    82 FYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALF 141

Query:   133 LGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLI 192
             + K ADYLVEKQ++L  KA++   N   G     ++L+ +ET+++KYK  T   +L++ I
Sbjct:   142 VSKVADYLVEKQEVLFFKALHT--NLKGGET---KMLRAIETNRIKYKFYTNALLLVLSI 196

Query:   193 IAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF 252
             I+G VFL  VE L  VD+ YCVC+TITTLGYGD SFS++ GR FAVFWI++ TI +AQFF
Sbjct:   197 ISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFAVFWIITSTIIMAQFF 256

Query:   253 LYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEED 312
             +YL E+YT+ RQ     WVLTR++T  DLEAADLD D+ V  AEFV+YKLKE+GKIN+E+
Sbjct:   257 MYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAEFVVYKLKELGKINQEE 316

Query:   313 ISVLMERFRTLDADQSGNLTTADIMLLQQS 342
             IS  +E F  LD D SG L+  D+ L Q +
Sbjct:   317 ISSFLEEFEKLDVDHSGTLSPYDLTLAQSA 346

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0031004 "potassium ion-transporting ATPase complex" evidence=IDA

UNIPROTKB|Q8LIN5 TPKB "Two pore potassium channel b" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 142/268 (52%), Positives = 187/268 (69%)

Query:    73 FFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI 132
             F+L    + G +T   LD++YFC+VTMTTVGYGDLVP S  AKLLAC +VF+G+A+VG  
Sbjct:    83 FYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDAAKLLACAFVFAGVAVVGTF 142

Query:   133 LGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLI 192
             L KAADYLVEKQ+ LL +A++++            +++ +E +KV+YKL TA  +L+  +
Sbjct:   143 LSKAADYLVEKQEALLFRALHSHT-----------MVRAMEMNKVRYKLYTAGLLLVAAV 191

Query:   193 IAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF 252
              +G V L  VE ++ VDA YCVC+T+TTLGYGD SFS+ GGR FAV WI   T+ +A FF
Sbjct:   192 ASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFF 251

Query:   253 LYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEED 312
             LY  ELYT+ RQ    +WVL R+ T  DLEAADLD D  V  A+FV+YKLKE+GKI++ED
Sbjct:   252 LYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYKLKELGKISQED 311

Query:   313 ISVLMERFRTLDADQSGNLTTADIMLLQ 340
             IS  ++ F  LDAD SG L+ AD+   Q
Sbjct:   312 ISEFLDEFDNLDADHSGTLSPADLAAAQ 339

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2141375 KCO5 "Ca2+ activated outward rectifying K+ channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 92/266 (34%), Positives = 156/266 (58%)

Query:    77 RHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKA 136
             R    G +T+ V+D++YFCIVTM T+GYGD+ P +   K+ A V+V  G   + ++L   
Sbjct:   139 RDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGV 198

Query:   137 ADYLVEKQQLLL---VKAMYNYENASAGSVSAAEVLKDVETHK--VKYKLVTATFILLVL 191
              +Y+++ Q+ ++   ++   ++++      SA + + D E  +  ++ K+  A  ++++ 
Sbjct:   199 VNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLC 258

Query:   192 IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQF 251
             I  G + L  VE+L FVD++Y    ++TT+GYGD +F T  GR FA  W+L  T+ +A+ 
Sbjct:   259 IGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLAVARA 318

Query:   252 FLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEE 311
             FLYL E     R    VK  L R++T  DL  AD      +S +E+++ KLKEMGKI ++
Sbjct:   319 FLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHGFISKSEYIVLKLKEMGKITQK 378

Query:   312 DISVLMERFRTLDADQSGNLTTADIM 337
             DI  ++ +F  LD +Q G +T  D++
Sbjct:   379 DIDQVVIQFEKLDPNQIGKITLPDLL 404

GO:0005267 "potassium channel activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2117681 KCO6 "Ca2+ activated outward rectifying K+ channel 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 96/312 (30%), Positives = 167/312 (53%)

Query:    26 SNLNEPMEQNDKKSLLPLESALMSQEEIRFRQXXXXXXXXXXXXXXCFFLIRHQIKGEKT 85
             ++L+ P+ Q D     P E+   S+  +R  Q               ++L R      +T
Sbjct:   131 NDLHHPIRQKD-----PTET---SRSVVR--QAFALLVVYLSLGVLIYWLNRDHYVVNQT 180

Query:    86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
             + V+D +YFCIVTM T+GYGD+ P+S + KL + ++V  G   + ++L     Y+++ Q+
Sbjct:   181 HPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQE 240

Query:   146 LLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDL 205
               ++ +    +          +V K     +++ K+  A  ++++ I  G+  +  +E++
Sbjct:   241 SYMLDSAKRRDEPEKRRSYIIDVKKG--RMRIRLKVALALGVVVLCIAVGVGIMHFIEEI 298

Query:   206 KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
              ++D+ Y    ++TT+GYGD +F T  GR FA  W+L  T+ +A+ FLYL E     R  
Sbjct:   299 GWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEARVDKRNR 358

Query:   266 SFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDA 325
                K VL   ++ S   AAD+D++  VS AE+VIYKLKEM KI ++DI  + ++F  LD 
Sbjct:   359 ERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPISKQFDKLDR 418

Query:   326 DQSGNLTTADIM 337
               +G +T  D++
Sbjct:   419 CSNGKITLLDLL 430

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2170423 KCO2 "Ca2+ activated outward rectifying K+ channel 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 87/267 (32%), Positives = 149/267 (55%)

Query:    73 FFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI 132
             ++L R     ++T+ V+D++YFCIVTM T+GYGD+ P S + KL +  +V  G   + ++
Sbjct:   164 YWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDIL 223

Query:   133 LGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFI-LLVL 191
             L     Y+++ Q+  +++   N              + DV+  +++ +L     + ++VL
Sbjct:   224 LSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGLALGVVVL 283

Query:   192 IIA-GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQ 250
              +  G++ +  VE + ++D+ Y    ++TT+GYGD +F+T  GR  A  W+L  T+ +A+
Sbjct:   284 CLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLVSTLAVAR 343

Query:   251 FFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINE 310
               L+L E     R     K VL   ++ S    AD+D +  VS AEFVIYKLK+M KI E
Sbjct:   344 AILFLAESRVDKRNRERAKKVLGESMSISQFLDADIDCNGCVSKAEFVIYKLKKMDKITE 403

Query:   311 EDISVLMERFRTLDADQSGNLTTADIM 337
             +DI+ +  +F  LD   SG +T  D++
Sbjct:   404 KDINPIGFQFDKLDRTNSGRITLLDLL 430

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196155 TPK4 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 67/186 (36%), Positives = 109/186 (58%)

Query:    73 FFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI 132
             FF  R Q  G +TN  +D+ YF IVT +TVGYGD+VP ++  K+L  V V +G+  +  +
Sbjct:    55 FF--RDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYL 112

Query:   133 LGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLI 192
             L +   +++  Q+     A+ +  N +        + +D +  ++K+KL  A   + + +
Sbjct:   113 LNRVVSHVLSLQE----NAILDRINKTRNRAIRDHIAEDGKI-RLKWKLCLAFCAVGLCV 167

Query:   193 IAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF 252
              +G +FL V E L ++D++Y    ++TT+GYGD +F T  GR FAVFW+L  TI +A  F
Sbjct:   168 GSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWLLLSTIAMATLF 227

Query:   253 LYLTEL 258
             LYL E+
Sbjct:   228 LYLAEM 233

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

TAIR|locus:2170413 KCO3 "AT5G46360" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/155 (34%), Positives = 84/155 (54%)

Query:   182 VTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWI 241
             V       V+   G + +  V  + ++D+       +TT+G+GD +F+T  G F A  W+
Sbjct:   100 VAVALYFFVVTFCGFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAAVWL 159

Query:   242 LSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYK 301
             L  T+ +A+ FL+L +     R     K VL   ++ S   AAD+D+D  +S+AEF IYK
Sbjct:   160 LVSTLAVARAFLFLADARADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFAIYK 219

Query:   302 LKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
             LK+M KI +ED   +  +F  LD  QSG +T  D+
Sbjct:   220 LKQMEKITQEDFIQICNQFDKLDRTQSGRITLVDL 254

GO:0005509 "calcium ion binding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0006863 "purine nucleobase transport" evidence=RCA

CGD|CAL0005819 TOK1 [Candida albicans (taxid:5476)]

 Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 66/259 (25%), Positives = 116/259 (44%)

Query:    91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI--------LGKAADYL-- 140
             ++Y+CIV+  T+G GD++P ++ AK+   V+   G+ ++GLI        L  AA  +  
Sbjct:   303 ALYYCIVSFLTIGLGDILPETSGAKVAVLVFSLGGVLIMGLIVATLRSVILSSAAPAIFW 362

Query:   141 --VEKQQLLLVKAMYNYEN---ASAGSVSAAEVLK-DVETHKVKYKLVTATFILLVLIIA 194
               VEK ++ L+ A  + EN    S  S     VL+  V++   K  L     + ++  + 
Sbjct:   363 NDVEKTRIALL-AQLDKENRHLTSEESFHEMRVLRRKVKSRHKKVSLALTIAVFMIFWLI 421

Query:   195 GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY 254
             G +    +E   + +A+Y     + T+ YGD +  T  GR F V W + G + L    + 
Sbjct:   422 GALIFQKIEKWSYFNAMYFCFLCLITIVYGDYAPKTSLGRVFFVSWAV-GAVPLMTILVS 480

Query:   255 LT--ELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEED 312
                  LY  S  N    W  T   +  + E  DL             +K K++ +  E+ 
Sbjct:   481 NVGDTLYEIS--NDISAWFSTWMFSTKE-EYRDLK------------WKKKKLQEDQEDQ 525

Query:   313 ISVLMERFRTLDADQSGNL 331
             ++V  E  R+ + D+  +L
Sbjct:   526 LTVNSEAVRSSELDEDLDL 544

GO:0005267 "potassium channel activity" evidence=ISS;IMP;IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0030007 "cellular potassium ion homeostasis" evidence=ISS;IMP;IDA

GO:0006813 "potassium ion transport" evidence=IMP

UNIPROTKB|Q59SJ7 TOK1 "Putative uncharacterized protein TOK1" [Candida albicans SC5314 (taxid:237561)]

 Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 66/259 (25%), Positives = 116/259 (44%)

Query:    91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI--------LGKAADYL-- 140
             ++Y+CIV+  T+G GD++P ++ AK+   V+   G+ ++GLI        L  AA  +  
Sbjct:   303 ALYYCIVSFLTIGLGDILPETSGAKVAVLVFSLGGVLIMGLIVATLRSVILSSAAPAIFW 362

Query:   141 --VEKQQLLLVKAMYNYEN---ASAGSVSAAEVLK-DVETHKVKYKLVTATFILLVLIIA 194
               VEK ++ L+ A  + EN    S  S     VL+  V++   K  L     + ++  + 
Sbjct:   363 NDVEKTRIALL-AQLDKENRHLTSEESFHEMRVLRRKVKSRHKKVSLALTIAVFMIFWLI 421

Query:   195 GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY 254
             G +    +E   + +A+Y     + T+ YGD +  T  GR F V W + G + L    + 
Sbjct:   422 GALIFQKIEKWSYFNAMYFCFLCLITIVYGDYAPKTSLGRVFFVSWAV-GAVPLMTILVS 480

Query:   255 LT--ELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEED 312
                  LY  S  N    W  T   +  + E  DL             +K K++ +  E+ 
Sbjct:   481 NVGDTLYEIS--NDISAWFSTWMFSTKE-EYRDLK------------WKKKKLQEDQEDQ 525

Query:   313 ISVLMERFRTLDADQSGNL 331
             ++V  E  R+ + D+  +L
Sbjct:   526 LTVNSEAVRSSELDEDLDL 544

GO:0005267 "potassium channel activity" evidence=ISS;IMP;IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0006813 "potassium ion transport" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=ISS;IDA

GO:0071805 "potassium ion transmembrane transport" evidence=ISS;IMP;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q850M0	KCO1_ORYSJ	No assigned EC number	0.5207	0.8979	0.8876	yes	no
Q8LBL1	TPK1_ARATH	No assigned EC number	0.5487	0.8833	0.8347	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	5e-14
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	2e-13
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-05
TIGR00933	390	TIGR00933, 2a38, potassium uptake protein, TrkH fa	0.003

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 60  LLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLAC 119
           +LL+  L  G + + L       +     LD++YF  VT+TT+GYGD+VP +   +L   
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWD----FLDALYFSFVTLTTIGYGDIVPLTDAGRLFTI 56

Query: 120 VYVFSGMALVGLILGKAA 137
           +Y+  G+ L  L L    
Sbjct: 57  IYILIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 186 FILLVLIIAGIVFLSVVEDLK---FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWIL 242
            +LL+++I G V+ S+ E+     F+DALY    T+TT+GYGD+   T  GR F + +IL
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYIL 60

Query: 243 SGTICLAQFFLYLT 256
            G      F   L 
Sbjct: 61  IGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 92  IYFCIVTMTTVGYGDLVPHSTLAKL 116
            YF IVTM+TVGYGD+VP S  A+L
Sbjct: 173 FYFSIVTMSTVGYGDIVPVSESARL 197

Length = 393

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142
           +IY+ I TMTTVGYGDL   +T+  +    Y+   + L   ++G   + +VE
Sbjct: 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305

Length = 823

>gnl|CDD|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNG-VLDSIYFCIVTMTTVGYG--DLVPHSTLA 114
            LLL +G++        L R       + G +L S +F   T+ T G+   D     T  
Sbjct: 205 FLLLAIGFILF----LLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTAT 260

Query: 115 KLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVET 174
            +L  + +F G        G  A  +      +L+K +Y                  + +
Sbjct: 261 LVLLLLLMFIGGC-----SGSTAGGIKTTTFAILLKQVYREIRRGIHPRI-------IFS 308

Query: 175 HKVKYKLVT--------ATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYG 224
            ++  K +         + F++  LI    +   +     F+ +L+ V S   T+G  
Sbjct: 309 RRIGGKTIDKAILISVWSFFLVFALIFLLSILELISSGYDFLTSLFEVVSAFGTVGLS 366

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.97
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	99.92
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.58
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.57
PRK10537	393	voltage-gated potassium channel; Provisional	99.56
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.53
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.46
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.37
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.34
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.31
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.26
PRK10537	393	voltage-gated potassium channel; Provisional	99.26
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.18
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.15
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	99.06
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.05
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.02
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.97
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	98.93
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.86
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.64
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.61
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	98.49
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.42
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.31
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	98.27
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.27
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	97.78
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	97.74
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.74
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	97.12
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	97.07
PF00520	200	Ion_trans: Ion transport protein calcium channel s	97.06
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	96.82
PRK05482	559	potassium-transporting ATPase subunit A; Provision	96.75
PRK10750	483	potassium transporter; Provisional	96.46
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.43
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	96.24
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	95.87
KOG1053	1258	consensus Glutamate-gated NMDA-type ion channel re	95.82
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	95.79
PRK10750	483	potassium transporter; Provisional	95.71
KOG4440	993	consensus NMDA selective glutamate-gated ion chann	95.45
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	95.38
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	95.25
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	95.21
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	95.16
PF00520	200	Ion_trans: Ion transport protein calcium channel s	95.01
KOG1052	656	consensus Glutamate-gated kainate-type ion channel	94.73
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	92.93
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	92.2
KOG1054	897	consensus Glutamate-gated AMPA-type ion channel re	91.08
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	90.76
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	90.74
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	90.4
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	89.83
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	86.55
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	85.21
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	84.68
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	84.29
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	82.79
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	82.4
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	82.16
KOG0031	171	consensus Myosin regulatory light chain, EF-Hand p	81.85
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	81.81

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.9e-30  Score=232.72  Aligned_cols=195  Identities=22%  Similarity=0.323  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc---------------------------------------ccCCCCCCchhhhhh
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQ---------------------------------------IKGEKTNGVLDSIYF   94 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~---------------------------------------~~~~~~~~~~~a~y~   94 (343)
                      +...+.+..+.|+++|+.+|-..|..                                       ....+.|.|..||||
T Consensus         8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYF   87 (350)
T KOG4404|consen    8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYF   87 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEE
Confidence            45556677888999999999777631                                       012334999999999


Q ss_pred             hhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhh
Q 038674           95 CIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVET  174 (343)
Q Consensus        95 ~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~  174 (343)
                      +.+.+||||||.-+|.|..||+||++|+++|+++..+.+..+++.+..-. ..+.++.+++...+..  .+         
T Consensus        88 a~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~~--~~---------  155 (350)
T KOG4404|consen   88 ATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRRW--DV---------  155 (350)
T ss_pred             EEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccC--CC---------
Confidence            99999999999999999999999999999999999999999998775532 2334444443222111  11         


Q ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCC--------ccchhHHHHHHHHHH
Q 038674          175 HKVKYK-LVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFST--------RGGRFFAVFWILSGT  245 (343)
Q Consensus       175 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t--------~~gr~~~~~~~~~g~  245 (343)
                        .... +...+...+++++.|+.+|...|+|+|+||+||||||+|||||||+++..        +.++.+..++|++|+
T Consensus       156 --S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl  233 (350)
T KOG4404|consen  156 --SVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGL  233 (350)
T ss_pred             --cHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHH
Confidence              1122 23344556677889999999999999999999999999999999999864        467899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 038674          246 ICLAQFFLYLTELYTQS  262 (343)
Q Consensus       246 ~~~~~~~~~~~~~~~~~  262 (343)
                      .+++.+++.+.-.+...
T Consensus       234 ~vi~a~~NllvLrf~t~  250 (350)
T KOG4404|consen  234 CVIYALLNLLVLRFMTM  250 (350)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999998877555433

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1e-25  Score=219.74  Aligned_cols=171  Identities=26%  Similarity=0.453  Sum_probs=133.0

Q ss_pred             cCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhh
Q 038674           81 KGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK------AMYN  154 (343)
Q Consensus        81 ~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  154 (343)
                      .....|+|.+|+||+++++||||||+++|.|..||++|++|+++|+|++.++++.+++++.+.......+      ....
T Consensus       109 ~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~  188 (433)
T KOG1418|consen  109 PDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRI  188 (433)
T ss_pred             CCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            3455699999999999999999999999999999999999999999999999999999998766554421      0001


Q ss_pred             hccccCCCcchhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCc
Q 038674          155 YENASAGSVSAAEVLKDVETHK---VKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTR  231 (343)
Q Consensus       155 ~~~~~~~~~~~~e~lr~le~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~  231 (343)
                      ..+. ...........+.....   .+.++..++.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+.
T Consensus       189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~  267 (433)
T KOG1418|consen  189 RSNL-RRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTL  267 (433)
T ss_pred             hhhh-hccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCC
Confidence            1111 00000111111111111   2566777777888888999999999999999999999999999999999999998


Q ss_pred             cch--------hHHHHHHHHHHHHHHHHH
Q 038674          232 GGR--------FFAVFWILSGTICLAQFF  252 (343)
Q Consensus       232 ~gr--------~~~~~~~~~g~~~~~~~~  252 (343)
                      .++        .+..+++++|...++...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  268 LGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             cceeeccccccchhHHHHHhhhhHHHHHh
Confidence            866        688999999999888887

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.58  E-value=7e-16  Score=115.80  Aligned_cols=74  Identities=39%  Similarity=0.709  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHh---hcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          187 ILLVLIIAGIVFLSV---VEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT  260 (343)
Q Consensus       187 ~~~~~~~~g~~~~~~---~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~  260 (343)
                      +++.+++.|++++..   .|+|++.||+||+++|+|||||||+.|.++.||++++++++.|+.+++..++.+++.+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    2 ILLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566677777777   56799999999999999999999999999999999999999999999999999998765

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.57  E-value=1.4e-14  Score=108.68  Aligned_cols=76  Identities=34%  Similarity=0.691  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           62 LVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV  141 (343)
Q Consensus        62 l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~  141 (343)
                      +++++..++..++. ++.   .+.|++.||+||+++|+||+||||+.|.++.||+++++++++|++++++.++.+++.+.
T Consensus         3 ~~~~l~~~~~~~~~-~~~---~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    3 LLLVLAFGAIFFYI-SEG---SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHH-TTS---SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHH-HHh---cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555566666665 221   23499999999999999999999999999999999999999999999999999988764

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.56  E-value=1.3e-14  Score=140.20  Aligned_cols=116  Identities=19%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674          182 VTATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL  255 (343)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~  255 (343)
                      ..++..+..++..|+++++..|+      +++.||+||+++|+|||||||+.|.+..||+|++++++.|++++++.++.+
T Consensus       138 l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i  217 (393)
T PRK10537        138 LFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI  217 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566667776665554      799999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccchhhhhccCCCccee----hHHHHHHHHHHcC
Q 038674          256 TELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVS----VAEFVIYKLKEMG  306 (343)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~----~~e~v~~~L~~~~  306 (343)
                      ...+.+.+.++..+.   ++      +....++|.+||    .++.+.++|.+.+
T Consensus       218 ~~p~i~~~l~~~~~~---~~------~~~~~k~HvII~G~g~lg~~v~~~L~~~g  263 (393)
T PRK10537        218 FGPVIRGNLKRLVKG---RI------SHMHRKDHFIICGHSPLAINTYLGLRQRG  263 (393)
T ss_pred             HHHHHHHHHHHHHHh---hh------hhcccCCeEEEECCChHHHHHHHHHHHCC
Confidence            876665554433221   11      112236888887    4556777777665

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.53  E-value=2.9e-13  Score=129.78  Aligned_cols=87  Identities=22%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674          182 VTATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL  255 (343)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~  255 (343)
                      ++.+++.+.+.++++++|....+      .|..-++||+++|||||||||++|.|..||+++..+++.|+.++|..+..+
T Consensus       347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI  426 (477)
T KOG3713|consen  347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII  426 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence            34445555666677777655322      567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 038674          256 TELYTQSRQNSFV  268 (343)
Q Consensus       256 ~~~~~~~~~~~~~  268 (343)
                      .+-+.....+...
T Consensus       427 v~nF~~~y~~~k~  439 (477)
T KOG3713|consen  427 VNNFSMYYSELKA  439 (477)
T ss_pred             hhhHHHHHHHHHH
Confidence            8887765544433

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.46  E-value=3.4e-13  Score=129.36  Aligned_cols=74  Identities=26%  Similarity=0.480  Sum_probs=65.0

Q ss_pred             HHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           72 CFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ  145 (343)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~  145 (343)
                      +.|+.|++.++.++.|...++|||++|||||||||++|+|..||+++...++.|+.++|+.+..+.+.+.+-..
T Consensus       362 lvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~  435 (477)
T KOG3713|consen  362 LVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYS  435 (477)
T ss_pred             HHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence            34666777777779999999999999999999999999999999999999999999999998888877765443

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.37  E-value=1e-12  Score=126.73  Aligned_cols=99  Identities=25%  Similarity=0.312  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcc-----------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHH
Q 038674          178 KYKLVTATFILLVLIIAGIVFLSVVED-----------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTI  246 (343)
Q Consensus       178 ~~~~~~~~~~~~~~~~~g~~~~~~~e~-----------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~  246 (343)
                      +..++....+-++.+++.+.+-++.|.           -+|.||+||.++|+|||||||.+|.|+.||+++..+.++|+.
T Consensus       230 ~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiS  309 (654)
T KOG1419|consen  230 SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGIS  309 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHH
Confidence            344555555544444455555555553           579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038674          247 CLAQFFLYLTELYTQSRQNSFVKWVLTRQL  276 (343)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  276 (343)
                      +++...+.+.+-+..+-+++...+..+|++
T Consensus       310 FFALPAGILGSGfALKVQeq~RQKHf~rrr  339 (654)
T KOG1419|consen  310 FFALPAGILGSGFALKVQEQHRQKHFNRRR  339 (654)
T ss_pred             HHhcccccccchhhhhhHHHHHHHHHHhhc
Confidence            999999999887765544444444444443

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.1e-12  Score=120.79  Aligned_cols=83  Identities=22%  Similarity=0.339  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038674          183 TATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLT  256 (343)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~  256 (343)
                      +++++++.++++++.+|....+      .+..|||||+++|||||||||++|.|..||++..++.+.|+..++..+..+.
T Consensus       364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV  443 (507)
T KOG1545|consen  364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV  443 (507)
T ss_pred             HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence            3444555555555555543222      5789999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHH
Q 038674          257 ELYTQSRQN  265 (343)
Q Consensus       257 ~~~~~~~~~  265 (343)
                      +-+.--+.|
T Consensus       444 sNFnyFYhr  452 (507)
T KOG1545|consen  444 SNFNYFYHR  452 (507)
T ss_pred             ecccceeec
Confidence            766544333

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.31  E-value=3.5e-12  Score=123.03  Aligned_cols=80  Identities=23%  Similarity=0.408  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhhhc----ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038674           62 LVGYLGVGALCFFLIRHQ----IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA  137 (343)
Q Consensus        62 l~~~l~~g~~~~~~~~~~----~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~  137 (343)
                      -++.++.++.+.|+.|.+    ..+..+.+|.||+||..+|+|||||||.+|+|+.||+++..+.++|+.+|++..+.++
T Consensus       240 GFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILG  319 (654)
T KOG1419|consen  240 GFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILG  319 (654)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccccc
Confidence            344445566666677764    2445678999999999999999999999999999999999999999999999999888


Q ss_pred             HHHH
Q 038674          138 DYLV  141 (343)
Q Consensus       138 ~~~~  141 (343)
                      +-+.
T Consensus       320 SGfA  323 (654)
T KOG1419|consen  320 SGFA  323 (654)
T ss_pred             chhh
Confidence            7654

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.26  E-value=1.8e-11  Score=118.56  Aligned_cols=106  Identities=25%  Similarity=0.447  Sum_probs=86.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhcc-------------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHH
Q 038674          176 KVKYKLVTATFILLVLIIAGIVFLSVVED-------------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWIL  242 (343)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~g~~~~~~~e~-------------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~  242 (343)
                      +...++...+.+++..++.++.++++.|+             .+|++++||-++||+||||||++-.|..||+|.+++++
T Consensus       245 sssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil  324 (1103)
T KOG1420|consen  245 SSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFIL  324 (1103)
T ss_pred             cchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHH
Confidence            34456777788889999999998888875             67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCccee
Q 038674          243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVS  293 (343)
Q Consensus       243 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~  293 (343)
                      .|+++++..+..+.+++-.+            +...-+...+..+.|.+||
T Consensus       325 ~glamfasyvpeiielignr------------~kyggeyk~ehgkkhivvc  363 (1103)
T KOG1420|consen  325 GGLAMFASYVPEIIELIGNR------------KKYGGEYKAEHGKKHIVVC  363 (1103)
T ss_pred             HHHHHHHhhhHHHHHHHccc------------cccCceeehhcCCeeEEEe
Confidence            99999998888888766533            2233444556667787777

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.26  E-value=6.1e-11  Score=114.71  Aligned_cols=83  Identities=23%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           64 GYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus        64 ~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      ..++.+.+.+++.++.+. +..+++.+|+||+++|+||+||||+.|.|+.||++++++++.|++++++.++.+...+.++
T Consensus       146 ~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~  224 (393)
T PRK10537        146 SLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG  224 (393)
T ss_pred             HHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555665665444 3458999999999999999999999999999999999999999999999998887766554


Q ss_pred             HHHH
Q 038674          144 QQLL  147 (343)
Q Consensus       144 ~~~~  147 (343)
                      +.+.
T Consensus       225 ~l~~  228 (393)
T PRK10537        225 NLKR  228 (393)
T ss_pred             HHHH
Confidence            4433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.18  E-value=1.9e-10  Score=121.92  Aligned_cols=56  Identities=34%  Similarity=0.663  Sum_probs=52.6

Q ss_pred             chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus        88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      |..|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.+++.+.+.
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~  306 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG  306 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66689999999999999999999999999999999999999999999999987653

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.15  E-value=6.2e-12  Score=115.78  Aligned_cols=84  Identities=26%  Similarity=0.513  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV  129 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~----~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~  129 (343)
                      +++.+.+ ++.++++|.+.|    |+.|.+.+++.+.+..|||||+++|||||||||.+|.|..||++..++++.|+..+
T Consensus       357 SmrElgL-LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTi  435 (507)
T KOG1545|consen  357 SMRELGL-LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTI  435 (507)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEe
Confidence            4444433 444555666655    55566667788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          130 GLILGKAAD  138 (343)
Q Consensus       130 ~~~~~~~~~  138 (343)
                      ++.+..+.+
T Consensus       436 ALPVPVIVs  444 (507)
T KOG1545|consen  436 ALPVPVIVS  444 (507)
T ss_pred             cccccEEEe
Confidence            887766654

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=99.06  E-value=1.2e-10  Score=108.22  Aligned_cols=87  Identities=24%  Similarity=0.413  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL  133 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~  133 (343)
                      .+..+++.+...+++.+.+.++.|+..+..++.+...||||+++||||.||||.+|.|..||+|..++.+.|+.++++.+
T Consensus       323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV  402 (632)
T KOG4390|consen  323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV  402 (632)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence            45556666666777777777778888888888999999999999999999999999999999999999999999988866


Q ss_pred             HHHHHHH
Q 038674          134 GKAADYL  140 (343)
Q Consensus       134 ~~~~~~~  140 (343)
                      ..+.+.+
T Consensus       403 PvIVSNF  409 (632)
T KOG4390|consen  403 PVIVSNF  409 (632)
T ss_pred             cEEEech
Confidence            5554433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.05  E-value=7.2e-09  Score=109.99  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=52.3

Q ss_pred             ccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          207 FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       207 ~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      |..|+||+++|+|||||||++|.+..+++|+++++++|++++++.++.+++++.+..
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~  307 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  307 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344799999999999999999999999999999999999999999999999876543

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.02  E-value=2.2e-09  Score=98.00  Aligned_cols=85  Identities=26%  Similarity=0.461  Sum_probs=73.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------ccCccce
Q 038674          177 VKYKLVTATFILLVLIIAGIVFLSVVE----------------------------------------------DLKFVDA  210 (343)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~da  210 (343)
                      ...+...++.+.+.++++|+.+|...|                                              .|.|.-|
T Consensus         5 qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~Ga   84 (350)
T KOG4404|consen    5 QNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGA   84 (350)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcc
Confidence            345556667788899999999998765                                              1899999


Q ss_pred             eeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          211 LYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQ  261 (343)
Q Consensus       211 ~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~  261 (343)
                      |||+.+.+||||||-..|.|.+||+|+++|.++|+.+--.++..+.+-+..
T Consensus        85 FYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt  135 (350)
T KOG4404|consen   85 FYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT  135 (350)
T ss_pred             eEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988888888775543

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.97  E-value=7e-11  Score=109.84  Aligned_cols=78  Identities=27%  Similarity=0.382  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038674          183 TATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLT  256 (343)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~  256 (343)
                      +.+.+...++++++++|+...+      .+...||||+++||||.||||++|.|..||+|..++.+.|+.+++..+..+.
T Consensus       327 LlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIV  406 (632)
T KOG4390|consen  327 LLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIV  406 (632)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEE
Confidence            3444556667778888776554      4678899999999999999999999999999999999999999998887766


Q ss_pred             HHHH
Q 038674          257 ELYT  260 (343)
Q Consensus       257 ~~~~  260 (343)
                      +-+.
T Consensus       407 SNFS  410 (632)
T KOG4390|consen  407 SNFS  410 (632)
T ss_pred             echh
Confidence            6554

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=98.93  E-value=3e-09  Score=103.65  Aligned_cols=60  Identities=27%  Similarity=0.497  Sum_probs=56.1

Q ss_pred             cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ  264 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  264 (343)
                      |+|.+|+||+++++||||||+++|.|..||+++++|.++|+.++...++.+...+.....
T Consensus       114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~  173 (433)
T KOG1418|consen  114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR  173 (433)
T ss_pred             eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887765543

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.86  E-value=2.1e-09  Score=104.35  Aligned_cols=101  Identities=22%  Similarity=0.433  Sum_probs=82.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhH
Q 038674           43 LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQ------IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKL  116 (343)
Q Consensus        43 ~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~------~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~  116 (343)
                      .-.+++....+++..++.+++..++.++...++.|+.      +.+++-.+|+++.||-++||+||||||++..|..||.
T Consensus       238 ylnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrl  317 (1103)
T KOG1420|consen  238 YLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRL  317 (1103)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHH
Confidence            3344555555567777777777888888888888763      3445557899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          117 LACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus       117 ~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      |.+++++.|+++++-.+..+.+.+.++
T Consensus       318 fmvffil~glamfasyvpeiielignr  344 (1103)
T KOG1420|consen  318 FMVFFILGGLAMFASYVPEIIELIGNR  344 (1103)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence            999999999999999999888877553

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.64  E-value=1.9e-07  Score=95.62  Aligned_cols=55  Identities=22%  Similarity=0.463  Sum_probs=52.5

Q ss_pred             chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      |..|+||+++|+||+|||+.+|.++..++|++++|++|+.++|++|+++..++.+
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs  349 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS  349 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence            6679999999999999999999999999999999999999999999999988865

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.61  E-value=2.4e-08  Score=102.13  Aligned_cols=55  Identities=33%  Similarity=0.495  Sum_probs=50.8

Q ss_pred             cceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          208 VDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       208 ~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      .-|+||++.|+||+||||..|.+..-++|+++++++|++++|+++|.++.++...
T Consensus       296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~  350 (727)
T KOG0498|consen  296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL  350 (727)
T ss_pred             HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence            3479999999999999999999999999999999999999999999999887643

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=98.49  E-value=2.4e-06  Score=83.11  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-----ccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVE-----DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL  255 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e-----~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~  255 (343)
                      +.+.+..++++++.|...+...+     ..+.+.++||.++|++||||||.+|.-++..+..++.|.++++++-.-+..+
T Consensus       187 l~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l  266 (1087)
T KOG3193|consen  187 LLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDEL  266 (1087)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHH
Confidence            33344444455555554444333     2789999999999999999999999999999999999888887777666666


Q ss_pred             HHHHHHH
Q 038674          256 TELYTQS  262 (343)
Q Consensus       256 ~~~~~~~  262 (343)
                      +..+.++
T Consensus       267 ~~tw~er  273 (1087)
T KOG3193|consen  267 GQTWSER  273 (1087)
T ss_pred             HHHHHHH
Confidence            6555543

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.42  E-value=8e-06  Score=78.25  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc--------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF  252 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e~--------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~  252 (343)
                      ........+.++++.+.++...|.        .+|.+++|+..+|+.+|||||++|.|..||.+++...++|.++.+.++
T Consensus       254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv  333 (489)
T KOG3684|consen  254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV  333 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence            344445556677777777777664        358999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 038674          253 LYLTELYTQSR  263 (343)
Q Consensus       253 ~~~~~~~~~~~  263 (343)
                      +.++.-+...+
T Consensus       334 AvisRKLeLt~  344 (489)
T KOG3684|consen  334 AVIARKLELTK  344 (489)
T ss_pred             HHHHHHHHHHH
Confidence            98887665443

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.31  E-value=2.9e-06  Score=81.26  Aligned_cols=85  Identities=19%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674           57 QVLLLLVGYLGVGALCFFLIRHQ-IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGK  135 (343)
Q Consensus        57 ~~~~~l~~~l~~g~~~~~~~~~~-~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~  135 (343)
                      .+++..+.++++.+..+..-|.+ ...+...+|.++.|+..+|+.++||||++|.|..||.++++..++|..+.+++++.
T Consensus       256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAv  335 (489)
T KOG3684|consen  256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAV  335 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHH
Confidence            33444444555555555444542 23334467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 038674          136 AADYLV  141 (343)
Q Consensus       136 ~~~~~~  141 (343)
                      ++.-+.
T Consensus       336 isRKLe  341 (489)
T KOG3684|consen  336 IARKLE  341 (489)
T ss_pred             HHHHHH
Confidence            886553

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.27  E-value=2.6e-06  Score=83.56  Aligned_cols=57  Identities=26%  Similarity=0.588  Sum_probs=52.4

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      .-|..|+||+++.+||||||++.|.|...|+|.+..|++|-.+.+.+++.+...+.+
T Consensus       422 S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ  478 (971)
T KOG0501|consen  422 SAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ  478 (971)
T ss_pred             ceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            458899999999999999999999999999999999999999999999988876643

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.27  E-value=3.3e-06  Score=80.10  Aligned_cols=57  Identities=25%  Similarity=0.427  Sum_probs=48.0

Q ss_pred             CCchhhhhhhhhhhcccccCc--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGD--LVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd--~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      .+|.+||+|++.|.||||||.  +.|..+.+-++..+-+++|+.+.+++++.+-..+.+
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr  141 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR  141 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999998  678889999999999999999999999988776654

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=97.78  E-value=1.8e-05  Score=77.82  Aligned_cols=56  Identities=25%  Similarity=0.533  Sum_probs=51.5

Q ss_pred             ccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          207 FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       207 ~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      |..++||++.++||||||.+.|.|+.-|+|++..+++|-.+.+.+++-++..+.+.
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM  479 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM  479 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999888776644

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=97.74  E-value=8.7e-05  Score=72.55  Aligned_cols=63  Identities=29%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             CCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           82 GEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus        82 ~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                      ++...+.+.++||.++|++||||||.+|.-+..++..++.+.+.+.++.--+..++.--.+++
T Consensus       212 ~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erq  274 (1087)
T KOG3193|consen  212 RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQ  274 (1087)
T ss_pred             cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            334478999999999999999999999999999998888877777777666666665444443

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.74  E-value=1.5e-05  Score=75.67  Aligned_cols=59  Identities=20%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             cCccceeeEEEeEeeecccCC--cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGD--MSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD--~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      -+|.+||+||+-|.||||||.  +.|..+.+-++..+-.++|+.+.+.++|.+..-+...+
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~  143 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK  143 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            478999999999999999999  55777788888999999999999999988887665443

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.12  E-value=0.0025  Score=62.07  Aligned_cols=56  Identities=21%  Similarity=0.382  Sum_probs=50.2

Q ss_pred             chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus        88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                      |.-|+|||.-|+||+| --..|.|.....|.++=.++|+.+||.+++.+++.+.+..
T Consensus       184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn  239 (536)
T KOG0500|consen  184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN  239 (536)
T ss_pred             HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence            5569999999999998 4568999999999999999999999999999999887643

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=97.07  E-value=0.00098  Score=64.95  Aligned_cols=177  Identities=15%  Similarity=0.225  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHhhhc--ccCCCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHH--HHHH
Q 038674           62 LVGYLGVGALCFFLIRHQ--IKGEKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGL--ILGK  135 (343)
Q Consensus        62 l~~~l~~g~~~~~~~~~~--~~~~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~--~~~~  135 (343)
                      .++++..+.+.+++.+.+  ..+.+.....++.++...+++|.||.  |..--++..+++.++.|++|-.--+.  -+-.
T Consensus       204 ~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~  283 (390)
T TIGR00933       204 TFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKT  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHH
Confidence            333444555556555532  11122245788999999999999995  55555777888888888877332111  0000


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEE
Q 038674          136 AADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVC  215 (343)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~  215 (343)
                      ..-.+.-+......|+..+.......+.+++...     +.........+++.+..++++.... ...+.++.|+++=++
T Consensus       284 ~r~~vl~~~~~~~~~~~~~~~~v~~~~i~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fe~~  357 (390)
T TIGR00933       284 TTFAILLKQVYREIRRGIHPRIIFSRRIGGKTID-----KAILISVWSFFLVFALIFLLSILEL-ISSGYDFLTSLFEVV  357 (390)
T ss_pred             HHHHHHHHHHHHHHHccCCCceEEeEEECCeehH-----HHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHHHH
Confidence            0000000011111111111111100001111110     0111111111111111122222211 123688999999899


Q ss_pred             eEeeecccCCc---ccCCccchhHHHHHHHHH
Q 038674          216 STITTLGYGDM---SFSTRGGRFFAVFWILSG  244 (343)
Q Consensus       216 ~t~tTvGyGD~---~p~t~~gr~~~~~~~~~g  244 (343)
                      .+++|||.+==   ...++.+|++.++.|++|
T Consensus       358 Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G  389 (390)
T TIGR00933       358 SAFGTVGLSVGLTTANLPDAGKLILIVLMFIG  389 (390)
T ss_pred             HHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence            99999986542   335678899888887765

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=97.06  E-value=0.0065  Score=52.13  Aligned_cols=51  Identities=27%  Similarity=0.497  Sum_probs=41.6

Q ss_pred             CCCchhhhhhhhhhhcccccCccccC-----CchhhHHHH-HHHHHHHHHHHHHHHH
Q 038674           85 TNGVLDSIYFCIVTMTTVGYGDLVPH-----STLAKLLAC-VYVFSGMALVGLILGK  135 (343)
Q Consensus        85 ~~~~~~a~y~~~~t~tTvGyGd~~p~-----t~~gr~~~~-~~~l~Gi~~~~~~~~~  135 (343)
                      +.++..|+|+.+.++||.||||..|.     +..+.++.+ +..+.++.+++++++.
T Consensus       143 f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav  199 (200)
T PF00520_consen  143 FDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV  199 (200)
T ss_dssp             HSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence            36899999999999999999999997     788888884 4444556777777765

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.0091  Score=56.58  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=75.5

Q ss_pred             cccceeeeccCcccc--cccc-cchhhHHHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhh--hcccCC-----
Q 038674           19 SSKPVDYSNLNEPME--QNDK-KSLLPLESALMSQEEIRFRQVLLLL-----VGYLGVGALCFFLIR--HQIKGE-----   83 (343)
Q Consensus        19 ~s~p~~~s~l~~~~~--~~~~-~~~~~~~~i~~~~~~~~~~~~~~~l-----~~~l~~g~~~~~~~~--~~~~~~-----   83 (343)
                      ..++.+-...|....  .+.. ...+-+.+++...-...|+..++++     +.++++|.++|.+..  ++.+..     
T Consensus        23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~  102 (400)
T KOG3827|consen   23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGEN  102 (400)
T ss_pred             hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcC
Confidence            445555555554443  2222 2334455555554433444333332     234444555444433  222211     


Q ss_pred             ------CCCCchhhhhhhhhhhcccccCccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           84 ------KTNGVLDSIYFCIVTMTTVGYGDLVPH--STLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus        84 ------~~~~~~~a~y~~~~t~tTvGyGd~~p~--t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                            +..+|..||-|++-|=||||||--.+.  =|.+-+..++-+++|+.+=+.+++.+..-+.+.
T Consensus       103 ~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP  170 (400)
T KOG3827|consen  103 HTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP  170 (400)
T ss_pred             CCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence                  125899999999999999999987665  467788888888999998888888877666543

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=96.75  E-value=0.01  Score=59.49  Aligned_cols=173  Identities=16%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccC---------CCCCC------chhhhhhhhhhhcccc-cCccc-cCCchhhHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKG---------EKTNG------VLDSIYFCIVTMTTVG-YGDLV-PHSTLAKLL  117 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~---------~~~~~------~~~a~y~~~~t~tTvG-yGd~~-p~t~~gr~~  117 (343)
                      -+.++....+.++.|.+.+++.|..-++         +....      ...|+|-+++|-||-| +-.+. -.++.+..+
T Consensus       281 ~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv  360 (559)
T PRK05482        281 GWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLV  360 (559)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHH
Confidence            4455556666677788877777743111         11113      5688888888887888 65543 347888999


Q ss_pred             HHHHHHHH-HH-------HHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHH
Q 038674          118 ACVYVFSG-MA-------LVG-LILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFIL  188 (343)
Q Consensus       118 ~~~~~l~G-i~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~  188 (343)
                      .++.|++| ..       +.. .....+.-++..        .++.+        .++-.-|+++.+..+......+ +.
T Consensus       361 ~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~g--------lmvGr--------tpe~~gRkI~~~eik~A~~vil-v~  423 (559)
T PRK05482        361 PLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAG--------LMVGR--------TPEYLGKKIEAREMKLAALAIL-VH  423 (559)
T ss_pred             HHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHh--------HccCC--------CCeEEccccCHHHHHHHHHHHH-HH
Confidence            99999997 32       222 111111111110        01110        1111223333333333332222 22


Q ss_pred             HHHHHHHH-HHHHh-------hcc--cCccceeeEEEeEeeecc--cCCcccCCccchhHHHHHHHHH
Q 038674          189 LVLIIAGI-VFLSV-------VED--LKFVDALYCVCSTITTLG--YGDMSFSTRGGRFFAVFWILSG  244 (343)
Q Consensus       189 ~~~~~~g~-~~~~~-------~e~--~~~~da~y~~~~t~tTvG--yGD~~p~t~~gr~~~~~~~~~g  244 (343)
                      .+++++++ +....       .|.  ..+.|.+|=.+....|+|  +|++.+.|+.+++..++.|++|
T Consensus       424 ~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG  491 (559)
T PRK05482        424 PLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG  491 (559)
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            33333343 22222       232  578899998888888998  5668889999999988888865

>PRK10750 potassium transporter; Provisional

Probab=96.46  E-value=0.0072  Score=60.41  Aligned_cols=182  Identities=13%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHH-
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGL-  131 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~-  131 (343)
                      ++..+.+.++..+++++.++..+.  .++....+.++++.+...+||.||.  |..--++..+.+.++.|++|-.--+. 
T Consensus       274 ~r~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTa  351 (483)
T PRK10750        274 FRMFIGVQLTLVVICTLVLWFHNV--YSSALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTG  351 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCc
Confidence            444444444445555554444221  1111134667777777778999996  44444555677777777765332211 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccce
Q 038674          132 -ILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA  210 (343)
Q Consensus       132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da  210 (343)
                       -+-...-.+.-+......|+....+....-+.+.    |+++.+.. .+....+++.+..+.+++++. ..++.+..+|
T Consensus       352 GGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v~~~g----r~i~~~~v-~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA  425 (483)
T PRK10750        352 GGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGN----RALPERIL-EAVWGFFSAYALVFIVSMLAI-IATGVDDFSA  425 (483)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCceeeeeECC----EECCHHHH-HHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHH
Confidence             1111111111111111111111101110000011    11111111 222223333344444555544 5567778888


Q ss_pred             eeEEEeEeeecccCC--c----ccCCccchhHHHHHHHHH
Q 038674          211 LYCVCSTITTLGYGD--M----SFSTRGGRFFAVFWILSG  244 (343)
Q Consensus       211 ~y~~~~t~tTvGyGD--~----~p~t~~gr~~~~~~~~~g  244 (343)
                      +-=+..++++||.|=  .    ...++.+|++.++.|++|
T Consensus       426 ~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG  465 (483)
T PRK10750        426 FASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG  465 (483)
T ss_pred             HHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence            876677888887543  3    234578899988888865

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.43  E-value=0.012  Score=57.34  Aligned_cols=53  Identities=23%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             eeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          210 ALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       210 a~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      ++|||..|+||+| --..|.+...-.|.++=.++|+.++|..+|.+.+++....
T Consensus       187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn  239 (536)
T KOG0500|consen  187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN  239 (536)
T ss_pred             HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence            7999999999998 4456788888899999999999999999999999887654

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=96.24  E-value=0.021  Score=55.70  Aligned_cols=146  Identities=14%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCcccc------CCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674           62 LVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP------HSTLAKLLACVYVFSGMALVGLILGK  135 (343)
Q Consensus        62 l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p------~t~~gr~~~~~~~l~Gi~~~~~~~~~  135 (343)
                      -++..+++++.++..+      . .++++|++.++++++|-||.-...      .++...+..++.+++|-.-+......
T Consensus       110 y~~lt~l~~~~~~~~g------~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~~~  182 (390)
T TIGR00933       110 YLLGTILLAVRFVLTG------W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHYDV  182 (390)
T ss_pred             HHHHHHHHHHHHHHhc------c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3334444445555443      1 468899999999999999854332      23335566666666654333333211


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc---------cC
Q 038674          136 AADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVED---------LK  206 (343)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~---------~~  206 (343)
                      ..          ..+  +..++.              .++ .+..+.    +.+.++..+.+.+...|.         ..
T Consensus       183 ~~----------~~~--~~~~~l--------------~~~-~~~~~~----~~~~l~~~~~i~~~l~~~~~~~~~~~~~~  231 (390)
T TIGR00933       183 YL----------LLR--KRVFKL--------------SLD-TKVRLF----VTFLLLAIGFILFLLLERGNTLYSYSFGA  231 (390)
T ss_pred             HH----------Hcc--cCccee--------------ecC-ccHHHH----HHHHHHHHHHHHHHHHHHcccccCCCHHH
Confidence            11          000  000001              000 011111    122222334444444431         23


Q ss_pred             ccceeeEEEeEeeecccCCcc--cCCccchhHHHHHHHHHH
Q 038674          207 FVDALYCVCSTITTLGYGDMS--FSTRGGRFFAVFWILSGT  245 (343)
Q Consensus       207 ~~da~y~~~~t~tTvGyGD~~--p~t~~gr~~~~~~~~~g~  245 (343)
                      ..++.++.+.+.+|.||.-..  --++..+++.++.+++|-
T Consensus       232 ~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg  272 (390)
T TIGR00933       232 LLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG  272 (390)
T ss_pred             HHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence            678889999999999987543  234556777777777663

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.87  E-value=0.048  Score=54.54  Aligned_cols=56  Identities=23%  Similarity=0.465  Sum_probs=50.4

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      ..|..++||+.-|++||| |...|.+...-+|-.+--+.|+.+|+++++.+-+.+..
T Consensus       402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a  457 (815)
T KOG0499|consen  402 NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA  457 (815)
T ss_pred             CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            578899999999999999 89999999888888888889999999999998887764

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=95.82  E-value=0.056  Score=56.34  Aligned_cols=122  Identities=11%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             cCcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cccC
Q 038674           15 QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRH------------QIKG   82 (343)
Q Consensus        15 ~~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~------------~~~~   82 (343)
                      +....|.||+.+|+++++.....  -.....++.......|..++++++  ++....+|.+...            .-++
T Consensus       529 evVDFSvPFveTgIsVmV~rsng--tvspsAFLePfs~svWVmmFVm~l--ivaai~vFlFEy~SPvgyn~~l~~gkkpg  604 (1258)
T KOG1053|consen  529 EVVDFSVPFVETGISVMVARSNG--TVSPSAFLEPFSPSVWVMMFVMCL--IVAAITVFLFEYFSPVGYNRNLANGKKPG  604 (1258)
T ss_pred             ccccccccccccceEEEEEecCC--ccCchhhcCCcchHHHHHHHHHHH--HHHHHHHHHHhhcCcccccccccCCCCCC
Confidence            46689999999999999853322  223455566555522222222222  2222223322211            1123


Q ss_pred             CCCCCchhhhhhhhhhhcccccCcccc----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           83 EKTNGVLDSIYFCIVTMTTVGYGDLVP----HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus        83 ~~~~~~~~a~y~~~~t~tTvGyGd~~p----~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                      .+..++..|+|.+...+    |++.+|    +...+|+...+|+++++.+++..+++++.++...+
T Consensus       605 gp~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~  666 (1258)
T KOG1053|consen  605 GPSFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEE  666 (1258)
T ss_pred             CcceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44578889999776655    456555    45679999999999999999999999999887644

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=95.79  E-value=0.072  Score=50.68  Aligned_cols=58  Identities=22%  Similarity=0.218  Sum_probs=44.5

Q ss_pred             cCccceeeEEEeEeeecccCCcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFST--RGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t--~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      -+|..||-|++-|=||||||--++..  |.+-+..++-.++|+.+-+..+|.+..-+...
T Consensus       111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP  170 (400)
T KOG3827|consen  111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP  170 (400)
T ss_pred             cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            35778899999999999999988765  45566677778888888887777766544433

>PRK10750 potassium transporter; Provisional

Probab=95.71  E-value=0.07  Score=53.43  Aligned_cols=61  Identities=15%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccc---c--CCchhhHHHHHHHHHH
Q 038674           57 QVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV---P--HSTLAKLLACVYVFSG  125 (343)
Q Consensus        57 ~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~---p--~t~~gr~~~~~~~l~G  125 (343)
                      .+..+.+.+.+++++.+++..        .+++||+..++++++|-||.-..   +  .++.-.+.+++++++|
T Consensus       184 ~l~~iY~~lT~~~~~ll~~~G--------m~~fdAi~ha~saisTgGFs~~~~si~~~~~~~i~~v~~~~milg  249 (483)
T PRK10750        184 TLWLIYVLLTVACALALWFAG--------MDAFDAIGHSFSTIAIGGFSTHDASIGYFDSPTINTIIAIFLLIS  249 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHhccCcCCCccccccccCHHHHHHHHHHHHHH
Confidence            344444455555555555442        67999999999999999984221   1  1233344555555544

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=95.45  E-value=0.039  Score=55.35  Aligned_cols=120  Identities=21%  Similarity=0.282  Sum_probs=85.4

Q ss_pred             cccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------ccCCCC
Q 038674           17 LLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQ-----------IKGEKT   85 (343)
Q Consensus        17 l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~-----------~~~~~~   85 (343)
                      .-.|.||-+-|+.+......+++  .+..+++.+.. .++.+  +.+...+++..+|.+....           -+.+..
T Consensus       537 ieFskPfkYqGitILeKk~~r~S--tl~SFlQPfqs-tLW~l--v~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~a  611 (993)
T KOG4440|consen  537 IEFSKPFKYQGITILEKKEIRRS--TLDSFLQPFQS-TLWLL--VGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDA  611 (993)
T ss_pred             eeccCcccccceEEEeeCCCCCc--hHHHHHhHHHH-HHHHH--HHHHHHHHHHHHHHHHhcCcccceeeccCccchhhh
Confidence            45789999989888765554443  45555555555 33322  1233444455555554321           112234


Q ss_pred             CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV  141 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~  141 (343)
                      .++..|.||+.-.+..-|-|+-+|.+-..|++.++|+-+.+.+++-..++++.++.
T Consensus       612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV  667 (993)
T KOG4440|consen  612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV  667 (993)
T ss_pred             cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence            68899999999999999999999999999999999999998888888888887764

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=95.38  E-value=0.011  Score=56.97  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=64.0

Q ss_pred             CCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 038674           86 NGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGLI--LGKAADYLVEKQQLLLVKAMYNYENASAG  161 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
                      .....+.++...+.+|.||.  |+.--++..+++.++.|++|-.-.+..  +....-.+.-+..+...+.....+ .   
T Consensus       175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~-~---  250 (354)
T PF02386_consen  175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGA-V---  250 (354)
T ss_dssp             HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----
T ss_pred             HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCC-c---
Confidence            34456778888899999996  444446667887777777663322211  000000000000011111111110 0   


Q ss_pred             Ccchhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccC-ccceeeEEEeEeeecccCCcc--c-CCcc---c
Q 038674          162 SVSAAEVL-KDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLK-FVDALYCVCSTITTLGYGDMS--F-STRG---G  233 (343)
Q Consensus       162 ~~~~~e~l-r~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~-~~da~y~~~~t~tTvGyGD~~--p-~t~~---g  233 (343)
                        .+.... |+++++.. .+....+.+.++.+++++..+...+... +.|+++=++..++|||.+=-.  | .+..   +
T Consensus       251 --~~~~~~~r~i~~~~v-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~  327 (354)
T PF02386_consen  251 --SPVRFNGRRISEQTV-RKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFS  327 (354)
T ss_dssp             ------SSS---TTSHH-HHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHH
T ss_pred             --cceeecceeechhhh-hhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHH
Confidence              111111 11111111 1222233344455556666666655544 689999899999999854332  3 2334   7


Q ss_pred             hhHHHHHHHHH
Q 038674          234 RFFAVFWILSG  244 (343)
Q Consensus       234 r~~~~~~~~~g  244 (343)
                      |++.++.|++|
T Consensus       328 K~vli~~M~~G  338 (354)
T PF02386_consen  328 KLVLIFLMLLG  338 (354)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88887777765

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=95.25  E-value=0.024  Score=46.78  Aligned_cols=68  Identities=10%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYN  154 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (343)
                      .++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.+.+.+...+.+..++.+++
T Consensus        43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~d  110 (148)
T PF00060_consen   43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYEPPIDSLED  110 (148)
T ss_dssp             HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHTSS-SSHHH
T ss_pred             ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCCHHH
Confidence            4677899999888776 5567999999999999999999999999999999998876655433333333

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.21  E-value=0.097  Score=52.42  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             ccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          204 DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT  260 (343)
Q Consensus       204 ~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~  260 (343)
                      |-.|+-++||++-|++||| |...|.+..--+|..+=-+.|+.+++.+++.+-+.+.
T Consensus       401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~  456 (815)
T KOG0499|consen  401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG  456 (815)
T ss_pred             CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3579999999999999999 8888888777777777677899999999998877665

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=95.16  E-value=0.13  Score=51.66  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCC--cccCCccc------hhHHHHHHHHH
Q 038674          184 ATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGD--MSFSTRGG------RFFAVFWILSG  244 (343)
Q Consensus       184 ~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD--~~p~t~~g------r~~~~~~~~~g  244 (343)
                      .+++.+++++++++.....+.-++.|+++=++.++.|||.|=  ..|.+..+      |+..++.|+.|
T Consensus       402 ~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G  470 (499)
T COG0168         402 FFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG  470 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence            344445555666666655554479999999999999999754  33334444      77766666654

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=95.01  E-value=0.052  Score=46.45  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             cCccceeeEEEeEeeecccCCcccC-----CccchhHH-HHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFS-----TRGGRFFA-VFWILSGTICLAQFFLY  254 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~-----t~~gr~~~-~~~~~~g~~~~~~~~~~  254 (343)
                      .++..++|+.+.++||.|+||..|.     +..+.++. .+.++.++.+++.+++.
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav  199 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV  199 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence            4678899999999999999999997     66777877 44444555666666654

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=94.73  E-value=0.082  Score=55.09  Aligned_cols=125  Identities=18%  Similarity=0.195  Sum_probs=86.5

Q ss_pred             CcCcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccc------CCCCC
Q 038674           14 GQPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRH-QIK------GEKTN   86 (343)
Q Consensus        14 ~~~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~-~~~------~~~~~   86 (343)
                      ......|.||...++.+..........  ...++..... .++  +.+++.+++++.++|.+... ..+      ....|
T Consensus       306 ~~~vdfT~p~~~~~~~i~~~~~~~~~~--~~~fl~Pf~~-~vW--~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (656)
T KOG1052|consen  306 SKYVDFTIPYLQFGIVIIVRKPDSRSK--LWNFLAPFSP-EVW--LLILASLLLVGLLLWILERLSPYELPPRQIVTSLF  380 (656)
T ss_pred             cccEEeccceEeccEEEEEEecCCccc--ceEEecCCcH-HHH--HHHHHHHHHHHHHHHHHhccccccCCccccceeEe
Confidence            345688999999999999887666654  3444444433 222  33344455556665555441 111      12346


Q ss_pred             CchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           87 GVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus        87 ~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                      +...++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+...+.+++.+...+
T Consensus       381 ~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~  437 (656)
T KOG1052|consen  381 SLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPR  437 (656)
T ss_pred             ecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6667788888888777744 89999999999999999999999999999988886543

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=92.93  E-value=0.1  Score=29.65  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             HHHHhhcCCCCCcceehhhHhh
Q 038674          317 MERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       317 ~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .+.|.+.|.|++|.++.+|+..
T Consensus         2 ~~~F~~~D~d~DG~is~~E~~~   23 (25)
T PF13202_consen    2 KDAFQQFDTDGDGKISFEEFQR   23 (25)
T ss_dssp             HHHHHHHTTTSSSEEEHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHHH
Confidence            4579999999999999999753

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.20  E-value=13  Score=39.14  Aligned_cols=91  Identities=19%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcc-----------------cCccceeeEEEeEe--eecccCCcccCCc-----cchhHHHHH
Q 038674          185 TFILLVLIIAGIVFLSVVED-----------------LKFVDALYCVCSTI--TTLGYGDMSFSTR-----GGRFFAVFW  240 (343)
Q Consensus       185 ~~~~~~~~~~g~~~~~~~e~-----------------~~~~da~y~~~~t~--tTvGyGD~~p~t~-----~gr~~~~~~  240 (343)
                      ++.+++++.++..++.+.++                 .+..|++.-.+.|+  .||||||..-..+     .+++..+.|
T Consensus       548 ~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y  627 (782)
T KOG3676|consen  548 LIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAY  627 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHH
Confidence            33445555666666666543                 12345544444444  6899999975443     345554444


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038674          241 IL-SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQ  275 (343)
Q Consensus       241 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  275 (343)
                      ++ .-+.++-++++.+++.+..-.++....|+.++.
T Consensus       628 ~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A  663 (782)
T KOG3676|consen  628 MILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA  663 (782)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH
Confidence            44 566666777777777665444433344444433

>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=91.08  E-value=0.055  Score=54.02  Aligned_cols=122  Identities=16%  Similarity=0.314  Sum_probs=80.4

Q ss_pred             CcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hh---cc--
Q 038674           16 PLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLI----------RH---QI--   80 (343)
Q Consensus        16 ~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~----------~~---~~--   80 (343)
                      ....|.||-..|+.++..........    ++....+...-.-..+++.|+-++..+|..-          +.   .+  
T Consensus       512 viDFSKPfMslGISIMIKKPqKsk~g----VFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~  587 (897)
T KOG1054|consen  512 VIDFSKPFMSLGISIMIKKPQKSKPG----VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTP  587 (897)
T ss_pred             hhccccchhhcCeEEEEeCcccCCCC----eeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCC
Confidence            45789999999999998655444322    2222222111112223444554444444211          11   11  


Q ss_pred             -cCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           81 -KGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        81 -~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                       +.++-.+..+++||+...+.--| -|+.|.+-.||+....|-++-+.+++-..++++.+++-
T Consensus       588 ~~~~NeFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv  649 (897)
T KOG1054|consen  588 SDPPNEFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  649 (897)
T ss_pred             CCCCccchhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence             13334678899999999988777 59999999999999999999988888888888887753

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=90.76  E-value=0.27  Score=29.01  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.5

Q ss_pred             HHHHHhhcCCCCCcceehhhHhh
Q 038674          316 LMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       316 ~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +.+-|+..|.|++|.++.+++..
T Consensus         2 ~~~~F~~~D~d~dG~I~~~Ef~~   24 (29)
T PF00036_consen    2 LKEAFREFDKDGDGKIDFEEFKE   24 (29)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHH
Confidence            45678889999999999999864

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=90.74  E-value=0.89  Score=31.81  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=39.3

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMER-FRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.++..|.... +...+ ...++.++...+. |+..|.|++|.++.+|...
T Consensus         7 ~~~D~d~~G~i~~~el~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~   64 (66)
T PF13499_consen    7 KKFDKDGDGYISKEELRRA-LKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN   64 (66)
T ss_dssp             HHHSTTSSSEEEHHHHHHH-HHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred             HHHcCCccCCCCHHHHHHH-HHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence            3456788999998765443 34443 3446666655444 9999999999999998754

...

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=90.40  E-value=0.13  Score=42.30  Aligned_cols=57  Identities=19%  Similarity=0.364  Sum_probs=43.8

Q ss_pred             CccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          206 KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       206 ~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      ++.+++|+++.+++. +-++..|.+..+|++...|.+.++.+.+...+.+++.++..+
T Consensus        44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~  100 (148)
T PF00060_consen   44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK  100 (148)
T ss_dssp             HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            366788888888877 667789999999999999999999999999999999888554

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=89.83  E-value=0.32  Score=28.94  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=19.1

Q ss_pred             HHHHHhhcCCCCCcceehhhHhh
Q 038674          316 LMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       316 ~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +.+-|+..|.|++|.++.+|+..
T Consensus         2 l~~~F~~~D~d~dG~I~~~el~~   24 (31)
T PF13405_consen    2 LREAFKMFDKDGDGFIDFEELRA   24 (31)
T ss_dssp             HHHHHHHH-TTSSSEEEHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHH
Confidence            56679999999999999999864

...

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=86.55  E-value=1.2  Score=37.11  Aligned_cols=56  Identities=27%  Similarity=0.358  Sum_probs=42.5

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHH--HHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEE--DISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e--~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..+.++++.|+..++..-+-......+.+  ....+.+.|+..|.|++|.++.+++..
T Consensus        52 ~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~  109 (151)
T KOG0027|consen   52 EIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK  109 (151)
T ss_pred             HhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence            44567888899888877665544444433  467888899999999999999999864

>smart00027 EH Eps15 homology domain

Probab=85.21  E-value=1.2  Score=34.08  Aligned_cols=31  Identities=35%  Similarity=0.467  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ++++++..+.+.|+.+|.|++|.++.+|+..
T Consensus         4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~   34 (96)
T smart00027        4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP   34 (96)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            5778888999999999999999999998854

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=84.68  E-value=28  Score=37.01  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-------c----CccceeeEEEeEeeecccCCc--ccCCccchhHHHHHHHHHHHH
Q 038674          183 TATFILLVLIIAGIVFLSVVED-------L----KFVDALYCVCSTITTLGYGDM--SFSTRGGRFFAVFWILSGTIC  247 (343)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~~e~-------~----~~~da~y~~~~t~tTvGyGD~--~p~t~~gr~~~~~~~~~g~~~  247 (343)
                      +++...++++++++++|...|-       .    .+.+|++-++.+ =|-||--+  .-.++...++.++.|.+|..-
T Consensus       586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P  662 (800)
T TIGR00934       586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP  662 (800)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence            4555666777888888888772       1    245666666654 55566533  223456677777777777544

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=84.29  E-value=17  Score=36.69  Aligned_cols=41  Identities=17%  Similarity=0.349  Sum_probs=27.7

Q ss_pred             CCchhhhhhhhhhhcccccCccccCC-------chhhHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHS-------TLAKLLACVYVFSGMA  127 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t-------~~gr~~~~~~~l~Gi~  127 (343)
                      .++.||++.++++++|-||- ..+.+       +.=.+++++++++|=.
T Consensus       197 m~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Ggi  244 (499)
T COG0168         197 MPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGI  244 (499)
T ss_pred             CCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcC
Confidence            46778999999999999996 44432       3334555555555533

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=82.79  E-value=0.61  Score=44.79  Aligned_cols=45  Identities=16%  Similarity=0.364  Sum_probs=25.9

Q ss_pred             CCchhhhhhhhhhhcccccCc----cccCC--chhhHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGD----LVPHS--TLAKLLACVYVFSGMALVG  130 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd----~~p~t--~~gr~~~~~~~l~Gi~~~~  130 (343)
                      .++++|++.++.+++|-||.-    +.|-.  +...+..++.+++|-.-+.
T Consensus        52 ~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~  102 (354)
T PF02386_consen   52 MPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFP  102 (354)
T ss_dssp             --SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HH
T ss_pred             CcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHH
Confidence            578899999999999999842    23333  3566677777776643333

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=82.40  E-value=1.4  Score=46.37  Aligned_cols=72  Identities=18%  Similarity=0.326  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccc---C-CCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHH
Q 038674           56 RQVLLLLVGYLGVGALCFFLIRHQIK---G-EKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMAL  128 (343)
Q Consensus        56 ~~~~~~l~~~l~~g~~~~~~~~~~~~---~-~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~  128 (343)
                      +.++..++++++++.+.|++.|-+.+   + +....+.+|++-++++ =|-||.  |+.-.++...++.++.|++|..=
T Consensus       585 ~ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P  662 (800)
T TIGR00934       585 WWLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP  662 (800)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence            34666677777888888888874211   1 1112467788877765 677886  55566788889999988887544

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=82.16  E-value=1.3  Score=30.98  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             HHHHHHhhcCCCCCcceehhhHhh
Q 038674          315 VLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       315 ~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ++.+.|..+|.|++|.|+.+|+..
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~~   24 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELRR   24 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHHH
Confidence            357789999999999999999865

...

>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]

Probab=81.85  E-value=1.4  Score=36.87  Aligned_cols=32  Identities=19%  Similarity=0.422  Sum_probs=29.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      .+|..|++.++.|.-+|.|.+|.++++||.+.
T Consensus        26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~   57 (171)
T KOG0031|consen   26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDM   57 (171)
T ss_pred             hhHHHHHHHHHHHHHHhccCCCcccHHHHHHH
Confidence            46899999999999999999999999999864

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=81.81  E-value=6.8  Score=26.06  Aligned_cols=45  Identities=22%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             cceehHHHHHHHHHHcC-C-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          290 KLVSVAEFVIYKLKEMG-K-INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       290 ~~v~~~e~v~~~L~~~~-~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      |.|+..++.... ...+ . .++++++.+..   ..|.|++|.++.+|...
T Consensus         3 G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~---~~D~~~~G~I~~~EF~~   49 (54)
T PF13833_consen    3 GKITREEFRRAL-SKLGIKDLSEEEVDRLFR---EFDTDGDGYISFDEFIS   49 (54)
T ss_dssp             SEEEHHHHHHHH-HHTTSSSSCHHHHHHHHH---HHTTSSSSSEEHHHHHH
T ss_pred             CEECHHHHHHHH-HHhCCCCCCHHHHHHHHH---hcccCCCCCCCHHHHHH
Confidence            456665554444 4433 4 77887777555   55889999999998764

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	343
4h33_A	137	Crystal Structure Of A Voltage-gated K+ Channel Por		5e-07
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		6e-07
3t1c_A	97	Crystal Structure Of Nak Channel D66y Mutant Length		2e-06
3tcu_A	97	Crystal Structure Of Nak2k Channel D68e Mutant Leng		2e-06
3tet_A	97	Crystal Structure Of Nak2k Channel Y66f Mutant Leng		2e-06
3t4d_A	97	Crystal Structure Of Nak2k Channel Y55f Mutant Leng		2e-06
2a0l_A	241	Crystal Structure Of Kvap-33h1 Fv Complex Length =		3e-06
3beh_A	355	Structure Of A Bacterial Cyclic Nucleotide Regulate		3e-06
3t4z_A	97	Crystal Structure Of Nak2k Channel Y55w Mutant Leng		3e-06
1orq_C	223	X-Ray Structure Of A Voltage-Dependent Potassium Ch		3e-06
3t2m_A	97	Crystal Structure Of Nak Channel N68d Mutant Length		1e-05
3e83_A	96	Crystal Structure Of The The Open Nak Channel Pore		1e-05
3vou_A	148	The Crystal Structure Of Nak-Navsulp Chimera Channe		4e-05
3vou_A	148	The Crystal Structure Of Nak-Navsulp Chimera Channe		3e-04
2q69_A	114	Crystal Structure Of Nak Channel D66n Mutant Length		4e-05
2q67_A	114	Crystal Structure Of Nak Channel D66a Mutant Length		5e-05
2q6a_A	114	Crystal Structure Of Nak Channel D66e Mutant Length		5e-05
3eff_K	139	The Crystal Structure Of Full-Length Kcsa In Its Cl		6e-05
2a9h_A	155	Nmr Structural Studies Of A Potassium Channel Chary		6e-05
3ogc_C	131	Kcsa E71a Variant In Presence Of Na+ Length = 131		8e-05
2ahy_A	110	Na+ Complex Of The Nak Channel Length = 110		8e-05
2wll_A	333	Potassium Channel From Burkholderia Pseudomallei Le		1e-04
1p7b_A	333	Crystal Structure Of An Inward Rectifier Potassium		1e-04
2q68_A	114	Crystal Structure Of Nak Channel D66a, S70e Double		1e-04
2q68_A	114	Crystal Structure Of Nak Channel D66a, S70e Double		1e-04
3stz_C	102	Kcsa Potassium Channel Mutant Y82c With Nitroxide S		2e-04
3stl_C	103	Kcsa Potassium Channel Mutant Y82c With Cadmium Bou		2e-04
3or7_C	103	On The Structural Basis Of Modal Gating Behavior In		2e-04
3ifx_A	129	Crystal Structure Of The Spin-Labeled Kcsa Mutant V		2e-04
3um7_A	309	Crystal Structure Of The Human Two Pore Domain K+ I		4e-04
1f6g_A	160	Potassium Channel (Kcsa) Full-Length Fold Length =		4e-04
1zwi_C	103	Structure Of Mutant Kcsa Potassium Channel Length =		4e-04
2atk_C	124	Structure Of A Mutant Kcsa K+ Channel Length = 124		5e-04
2p7t_C	103	Crystal Structure Of Kcsa Mutant Length = 103		6e-04
2qks_A	321	Crystal Structure Of A Kir3.1-Prokaryotic Kir Chann		7e-04
3or6_C	103	On The Structural Basis Of Modal Gating Behavior In		8e-04
4hyo_A	91	Crystal Structure Of Mthk Pore Length = 91		8e-04
2hjf_C	103	Potassium Channel Kcsa-Fab Complex With Tetrabutyla		8e-04
3hpl_C	124	Kcsa E71h-F103a Mutant In The Closed State Length =		9e-04

>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 83  EKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142
            + N   D++++ IVT TTVGYGD+VP + + ++LA + +  G+A +G+I     ++   
Sbjct: 39  PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98
Query: 143 KQQ 145
           K+ 
Sbjct: 99  KKP 101

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+GYGD S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70

>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+GYG+ S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIG 70

>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant Length = 97

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+GYG+ S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIG 70

>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant Length = 97

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G+GD S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIG 70

>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant Length = 97

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DAL+    T+TT+GYGD S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70

>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 46/90 (51%)
Query: 49  SQEEIRFRQXXXXXXXXXXXXXXCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV 108
           + ++IRF                  +++ +         V D++++ +VT TTVGYGD+V
Sbjct: 139 AADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 198
Query: 109 PHSTLAKLLACVYVFSGMALVGLILGKAAD 138
           P + + K++    + +G++ + L++G  ++
Sbjct: 199 PATPIGKVIGIAVMLTGISALTLLIGTVSN 228

>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 74  FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL 133
           ++I   I+ EK   +  ++++ +VT++T GYGD +P S   ++LA   + SG+ + GL  
Sbjct: 148 YVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA 207
Query: 134 G 134
           G
Sbjct: 208 G 208

>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant Length = 97

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DAL+    T+TT+GYGD S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70

>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 46/90 (51%)
Query: 49  SQEEIRFRQXXXXXXXXXXXXXXCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV 108
           + ++IRF                  +++ +         V D++++ +VT TTVGYGD+V
Sbjct: 127 AADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 186
Query: 109 PHSTLAKLLACVYVFSGMALVGLILGKAAD 138
           P + + K++    + +G++ + L++G  ++
Sbjct: 187 PATPIGKVIGIAVMLTGISALTLLIGTVSN 216

>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant Length = 97

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G GD S  T  G+ F + +I  G
Sbjct: 11  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIG 70

>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore Length = 96

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 178 KYKLVTATFILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
           K K     F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F
Sbjct: 2   KDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIF 61
Query: 237 AVFWILSG 244
            + +I  G
Sbjct: 62  TILYIFIG 69

>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel Length = 148

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 89  LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
           LD++YF +VT+TTVG G+  P +   K+   +Y+F G+ LV
Sbjct: 54  LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLV 94

>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel Length = 148

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 186 FILLVLII-AGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L  L + +G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F + +I  G
Sbjct: 31  FVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90

>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F + +I  G
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIG 87

>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F + +I  G
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIG 87

>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F + +I  G
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIG 87

>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed Conformation Length = 139

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 90  DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           D++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 87  DALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142

>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+ Length = 131

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 72  ALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 126

>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel Length = 110

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+ S  T  G+ F + +I  G
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIG 87

>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 79  QIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
            I  +   G + + +F + T+ TVGYGD+ P +  A  +A + +F GM+ + L  G
Sbjct: 88  PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG 143

>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 79  QIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
            I  +   G + + +F + T+ TVGYGD+ P +  A  +A + +F GM+ + L  G
Sbjct: 88  PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG 143

>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants Length = 114

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89  LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
           +D++YF +VT+TTVG G+  P +   K+   +Y+F G+ LV
Sbjct: 51  IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLV 91

>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants Length = 114

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
           F+L +L +I+G +F S VE L+ +DALY    T+TT+G G+    T  G+ F + +I  G
Sbjct: 28  FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIG 87

>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin Label Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 43  ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 97

>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ ++T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1 Length = 129

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 65  ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119

>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 90  DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE--KQQLL 147
            + +F    +TT+GYG++   +   +L    Y   G+ L G++L    D L    +  + 
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177
Query: 148 LVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFL-------S 200
            ++A++                  ++ H V  +LV     +L L+I  ++F+        
Sbjct: 178 HIEAIF------------------LKWH-VPPELVRVLSAMLFLLIGCLLFVLTPTFVFC 218
Query: 201 VVEDLKFVDALYCVCSTITTLGYGD 225
            +ED   ++A+Y V  T+TT+G+GD
Sbjct: 219 YMEDWSKLEAIYFVIVTLTTVGFGD 243

>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold Length = 160

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 65  ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119

>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel Length = 103

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel Length = 124

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 65  ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119

>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant Length = 103

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel Chimera Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 80  IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKA 136
           I  +   G   + +F + T+ TVGYGD+ P +  A  +A + +F GM+ + L  G A
Sbjct: 71  IANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCA 127

>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71q Length = 103

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 78  HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
           H I+GE       S+Y+  VT+ TVGYGD  PH+ L     C  +  G+    + + +  
Sbjct: 29  HFIEGESWTV---SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL 85
Query: 138 DYLVEK 143
           ++L+ +
Sbjct: 86  EFLINR 91

>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium (Tba) Length = 103

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 44  ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           ++++ + T TTVGYGDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 65  ALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQ 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	343
3um7_A	309	Potassium channel subfamily K member 4; potassium	1e-22
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-08
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	3e-21
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-19
3ouf_A	97	Potassium channel protein; ION channel, membrane,	9e-17
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-18
2q67_A	114	Potassium channel protein; inverted teepee, helix	3e-17
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	7e-18
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	1e-13
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-16
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	1e-15
1lnq_A	336	MTHK channels, potassium channel related protein;	7e-16
1lnq_A	336	MTHK channels, potassium channel related protein;	9e-13
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	8e-15
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	3e-07
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-14
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-07
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	4e-14
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	1e-06
2a9h_A	155	Voltage-gated potassium channel; potassium channel	6e-14
2a9h_A	155	Voltage-gated potassium channel; potassium channel	8e-07
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-13
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	2e-05
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	2e-13
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	7e-07
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	2e-12
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	6e-07
1xl4_A	301	Inward rectifier potassium channel; integral membr	5e-12
1xl4_A	301	Inward rectifier potassium channel; integral membr	3e-06
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	1e-11
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	2e-05
1p7b_A	333	Integral membrane channel and cytosolic domains; t	9e-11
1p7b_A	333	Integral membrane channel and cytosolic domains; t	8e-06
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	4e-10
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	4e-06
3sya_A	340	G protein-activated inward rectifier potassium CH;	3e-05
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	1e-04
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	7e-04

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 95.3 bits (236), Expect = 1e-22
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 16/195 (8%)

Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK 150
           + +F    +TT+GYG++   +   +L    Y   G+ L G++L    D L    +  +  
Sbjct: 119 AFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGH 178

Query: 151 AMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA 210
               +                 E  +V   ++      L+ ++        +ED   ++A
Sbjct: 179 IEAIFLKWH----------VPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEA 228

Query: 211 LYCVCSTITTLGYGDMSFSTR------GGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264
           +Y V  T+TT+G+GD              +    FWIL G    A     +        +
Sbjct: 229 IYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288

Query: 265 NSFVKWVLTRQLTFS 279
            +  +       + S
Sbjct: 289 RTRAEMGGLTAQSNS 303

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 48  MSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
           + +       +L+  + ++      F  +            L++IYF IVT+TTVG+GD 
Sbjct: 192 LVRVLSAMLFLLIGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDY 244

Query: 108 VP------HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           V        S   + L   ++  G+A    +L    ++L    +
Sbjct: 245 VAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 91.0 bits (225), Expect = 3e-21
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 18/245 (7%)

Query: 31  PMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLD 90
           P E   ++ L  L+   + + E    Q L   +G +   +     +  Q  G        
Sbjct: 37  PYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWDFTS 96

Query: 91  SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK 150
           +++F    ++T GYG  VP S   K    +Y   G+    L L      +        V 
Sbjct: 97  ALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVL 156

Query: 151 AMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA 210
             +                       V   L+    +     I   VF  + +D  F+++
Sbjct: 157 YFHIRWGF-----------SKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLES 205

Query: 211 LYCVCSTITTLGYGDMSFSTRGG-------RFFAVFWILSGTICLAQFFLYLTELYTQSR 263
            Y    +++T+G GD               +     ++L G I +        EL+   +
Sbjct: 206 FYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265

Query: 264 QNSFV 268
                
Sbjct: 266 FRKMF 270

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 180 KLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVF 239
           +      + ++ +I+G +F S VE L+ +DALY    T+TT+GYGD S  T  G+ F + 
Sbjct: 6   EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTIL 65

Query: 240 WILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTR 274
           +I  G   +   F ++ +L    +  S +  ++ R
Sbjct: 66  YIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 97

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 73.7 bits (181), Expect = 9e-17
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 54  RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTL 113
            F+ + +L +  L  G + +  +      E     +D++YF +VT+TTVGYGD  P +  
Sbjct: 6   EFQVLFVLTILTLISGTIFYSTV------EGLR-PIDALYFSVVTLTTVGYGDFSPQTDF 58

Query: 114 AKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
            K+   +Y+F G+ LV   + K A  +     L
Sbjct: 59  GKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 163 VSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLG 222
           ++   +L+         +      + ++ +I+G +F S VE L+ +DALY    T+TT+G
Sbjct: 6   LTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG 65

Query: 223 YGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTR 274
            G+ S  T  G+ F + +I  G   +   F ++ +L    +  S +  ++ R
Sbjct: 66  AGNFSPQTDFGKIFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 114

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 75.7 bits (186), Expect = 3e-17
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 43  LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
           L + L + ++  F+ + +L +  L  G + +  +      E     +D++YF +VT+TTV
Sbjct: 12  LRACLRAWKDKEFQVLFVLTILTLISGTIFYSTV------EGLR-PIDALYFSVVTLTTV 64

Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
           G G+  P +   K+   +Y+F G+ LV   + K A  +     L
Sbjct: 65  GAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 76.2 bits (188), Expect = 7e-18
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 53  IRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHST 112
           +   ++LLL++  +  G   F  I  +           S+Y+  VT+ TVGYGD  PH+ 
Sbjct: 1   VPATRILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPHTP 53

Query: 113 LAKLLACVYVFSGMALVGLILGKAADYLV 141
           L     C  +  G+    + + +  ++L+
Sbjct: 54  LGMYFTCTLIVLGIGTFAVAVERLLEFLI 82

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 23/79 (29%), Positives = 32/79 (40%)

Query: 180 KLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVF 239
                  ++L +II G      +E   +  +LY    TI T+GYGD S  T  G +F   
Sbjct: 2   PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCT 61

Query: 240 WILSGTICLAQFFLYLTEL 258
            I+ G    A     L E 
Sbjct: 62  LIVLGIGTFAVAVERLLEF 80

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 75.4 bits (185), Expect = 1e-16
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 163 VSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLG 222
           ++   +LK         +      +  + + +G +F S VE L+ +DALY    T+TT+G
Sbjct: 9   LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVG 68

Query: 223 YGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVK 269
            G+ S  T  G+ F + +I  G   +   F ++ +L    +  S + 
Sbjct: 69  DGNFSPQTDFGKVFTILYIFIG---IGLVFGFIHKLAVNVQLPSILS 112

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 72.3 bits (177), Expect = 1e-15
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 43  LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
           L++ L + ++  F+ + +L    L  G + +  +      E     LD++YF +VT+TTV
Sbjct: 15  LKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTV------EGLR-PLDALYFSVVTLTTV 67

Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
           G G+  P +   K+   +Y+F G+ LV   + K A  +     L
Sbjct: 68  GDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 111

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 76.3 bits (188), Expect = 7e-16
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 53  IRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHST 112
           +   ++LLL++  +  G   F  I  +           S+Y+  VT+ TVGYGD  P + 
Sbjct: 18  VPATRILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPSTP 70

Query: 113 LAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAM 152
           L        +  G+    + + +  ++L+ ++Q+ L+  +
Sbjct: 71  LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLI 110

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 27/93 (29%), Positives = 38/93 (40%)

Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
           +K        ++L +II G      +E   +  +LY    TI T+GYGD S ST  G +F
Sbjct: 16  LKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYF 75

Query: 237 AVFWILSGTICLAQFFLYLTELYTQSRQNSFVK 269
            V  I+ G    A     L E      Q   + 
Sbjct: 76  TVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 68.6 bits (168), Expect = 8e-15
 Identities = 19/88 (21%), Positives = 35/88 (39%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
               L   L   +           G       D+I++ + T TTVGYGD  P +   + +
Sbjct: 11  AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70

Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
           A   + +G+ +  L+    A   V +++
Sbjct: 71  AEQVMKAGIEVFALVTAALATDFVRREE 98

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
              A   L  ++          E        +   DA++    T TT+GYGD    T  G
Sbjct: 8   AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG 67

Query: 234 RFFAVFWILSGTICLA 249
           R  A   + +G    A
Sbjct: 68  RKVAEQVMKAGIEVFA 83

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 53  IRFRQV---LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP 109
           + +R      +LLV  L  G+    L      G +      ++++ + T TTVGYGDL P
Sbjct: 3   LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62

Query: 110 HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
            +   +L+A V + +G+   GL+    A + V ++Q
Sbjct: 63  VTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
              AT +L+++++AG     + E      + +    AL+    T TT+GYGD+   T  G
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67

Query: 234 RFFAVFWILSGTICLA 249
           R  AV  +++G     
Sbjct: 68  RLVAVVVMVAGITSFG 83

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 25/88 (28%), Positives = 42/88 (47%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
             +LLV  L  G+    L      G +      ++++   T TTV YGDL P +   +L+
Sbjct: 32  ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLV 91

Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
           A V + +G+   GL+    A + V ++Q
Sbjct: 92  AVVVMVAGITSFGLVTAALATWFVGREQ 119

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
              AT +L+++++AG     + E      + +    AL+  C T TT+ YGD+   T  G
Sbjct: 29  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG 88

Query: 234 RFFAVFWILSGTICLA 249
           R  AV  +++G     
Sbjct: 89  RLVAVVVMVAGITSFG 104

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
             +LLV  L  G+    L      G       D++++ + T TTVGYGDL P +   + +
Sbjct: 55  ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCV 114

Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
           A V + +G+   GL+    A + V ++Q
Sbjct: 115 AVVVMVAGITSYGLVFAAVATWFVGREQ 142

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
              AT +L+++++AG     + E        +   DAL+    T TT+GYGD+   T  G
Sbjct: 52  AGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG 111

Query: 234 RFFAVFWILSGTICLA 249
           R  AV  +++G     
Sbjct: 112 RCVAVVVMVAGITSYG 127

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 23/92 (25%), Positives = 52/92 (56%)

Query: 43  LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
           L +   + ++IRF  +   ++  +  GA   +++ +         V D++++ +VT TTV
Sbjct: 121 LSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTV 180

Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
           GYGD+VP + + K++    + +G++ + L++G
Sbjct: 181 GYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
                  +++ ++ G   + +VE    +       DAL+    T TT+GYGD+  +T  G
Sbjct: 133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG 192

Query: 234 RFFAVFWILSGTICLA 249
           +   +  +L+G   L 
Sbjct: 193 KVIGIAVMLTGISALT 208

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
             +LLV  L  G+    L      G +      ++++ + T TTVGYGDL P +   +L+
Sbjct: 38  ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 97

Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
           A V + +G+   GL+    A + V ++Q
Sbjct: 98  AVVVMVAGITSFGLVTAALATWFVGQEQ 125

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
              AT +L+++++AG     + E      + +    AL+    T TT+GYGD+   T  G
Sbjct: 35  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 94

Query: 234 RFFAVFWILSGTICLA 249
           R  AV  +++G     
Sbjct: 95  RLVAVVVMVAGITSFG 110

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 56  RQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHS 111
            + L LL+ +L +G + F    +      +  +   + D+ ++ +V+MTTVGYGD+VP +
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399

Query: 112 TLAKLLACVYVFSGMALVGL 131
              K++  +   +G+  + L
Sbjct: 400 IGGKIVGSLCAIAGVLTIAL 419

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 178 KYKLVTATFILLVLII--AGIVFL--SVVEDLKFV---DALYCVCSTITTLGYGDMSFST 230
             +L    F L + +I  +  V+   +   D +F    DA +    ++TT+GYGDM  +T
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399

Query: 231 RGGRFFAVFWILSGTICLA 249
            GG+       ++G + +A
Sbjct: 400 IGGKIVGSLCAIAGVLTIA 418

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 64.7 bits (157), Expect = 5e-12
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 52  EIRFRQVLLLLVG-YLGVG---ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
            + +   + L+ G YL      AL +      I+  +     D+ +F + TM T+GYG L
Sbjct: 43  TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102

Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
           +P   LA  L  +    GM  + +   
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAVAAS 129

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 181 LVTATFILLVLIIAGIVFL-----SVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
           L+T  +++   + A                 F DA +    T+ T+GYG +         
Sbjct: 52  LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANT 111

Query: 236 FAVFWILSGTICLA-QFFLYLTELYTQSRQNSFVKWVLTRQ 275
                 L G + LA    L        +    F   ++   
Sbjct: 112 LVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISD 152

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 56  RQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHS 111
            + L+ +    GV         ++I   I+ EK   +  ++++ +VT++T GYGD +P S
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185

Query: 112 TLAKLLACVYVFSGMALVGLILG 134
              ++LA   + SG+ + GL  G
Sbjct: 186 FAGRVLAGAVMMSGIGIFGLWAG 208

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 178 KYKLVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFST 230
              L+  T +  V++ A  +   V+E      KF     A++    T++T GYGD    +
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185

Query: 231 RGGRFFAVFWILSGTICLA 249
             GR  A   ++SG     
Sbjct: 186 FAGRVLAGAVMMSGIGIFG 204

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 61.4 bits (148), Expect = 9e-11
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 52  EIRFRQVLLLL----VGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
           ++ +      L    V    + AL + L    I  +   G + + +F + T+ TVGYGD+
Sbjct: 57  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116

Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
            P +  A  +A + +F GM+ + L  G
Sbjct: 117 HPQTVYAHAIATLEIFVGMSGIALSTG 143

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 181 LVTATFILLVLIIAGIVFLSVVEDL------KFVDALYCVCSTITTLGYGDMSFSTRGGR 234
              A   ++   +  +++      +       FV A +    T+ T+GYGDM   T    
Sbjct: 65  ASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAH 124

Query: 235 FFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
             A   I  G   +A     +   + + R  
Sbjct: 125 AIATLEIFVGMSGIALSTGLVFARFARPRAK 155

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 59.3 bits (143), Expect = 4e-10
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 54  RFRQVLLLLVGYLGVG---ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPH 110
                + L V +L +    A  + L    I  +   G   + +F + T+ TVGYGD+ P 
Sbjct: 42  WRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQ 101

Query: 111 STLAKLLACVYVFSGMALVGLILG 134
           +  A  +A + +F GM+ + L  G
Sbjct: 102 TVYAHWIATLEIFVGMSSIALATG 125

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 181 LVTATFILLVLIIAGIVFLSVVE-----DLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
            +   F+LL    A +  L            F  A +    T+ T+GYGDM   T    +
Sbjct: 48  SLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHW 107

Query: 236 FAVFWILSGTICLAQ----FFLYLTELYTQSRQNSFVKWVLTRQ 275
            A   I  G   +A      F+ +++   ++    F +  +   
Sbjct: 108 IATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISM 151

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP--HSTLAK 115
           ++  L+ Y+                   NG + +  F I T TT+GYG  V         
Sbjct: 62  MIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121

Query: 116 LLACVYVFSGMALVGLILG 134
           +L  +    G  +   ++G
Sbjct: 122 ILLLIQSVLGSIVNAFMVG 140

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 86  NGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGLILG 134
           NG + +  F I T TT+GYG   +     LA  +  V    G  +   ++G
Sbjct: 93  NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIG 143

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Length = 219

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
           +G +C  + +    E+       S V+ +  R    S    + L++       EF+ ++L
Sbjct: 62  TGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRL 121

Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
                 +  +   L   F  +DA  +  +   + 
Sbjct: 122 MLCYIYDFFE---LTVMFDEIDASGNMLVDEEEF 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	100.0
3um7_A	309	Potassium channel subfamily K member 4; potassium	100.0
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.72
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.72
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.72
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.72
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.71
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.71
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.71
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.7
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.7
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.69
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.69
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.68
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.68
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.68
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.66
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.66
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.65
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.65
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.56
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.55
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.53
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.52
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.47
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.47
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.43
1lnq_A	336	MTHK channels, potassium channel related protein;	99.41
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.39
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.37
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.36
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.35
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.34
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.3
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.28
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.28
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.27
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.26
1lnq_A	336	MTHK channels, potassium channel related protein;	99.25
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.24
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.11
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.96
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.95
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.83
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.66
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.6
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	97.04
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	96.68
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	96.0
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	95.73
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	93.74
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	90.2
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	89.84
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	89.23
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	88.51
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	88.06
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	87.87
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	87.55
1c07_A	95	Protein (epidermal growth factor receptor pathway	87.19
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	86.19
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	86.09
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	85.49
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	85.24
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	84.97
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	84.81
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	84.76
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	84.56
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	84.22
3li6_A	66	Calcium-binding protein; calcium signaling protein	84.09
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	84.07
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	84.06
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	83.77
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	83.57
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	83.44
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	83.34
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	83.31
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	83.29
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	83.23
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	83.14
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	83.11
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	83.02
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	83.01
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	82.96
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	82.9
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	82.85
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	82.62
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	82.41
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	82.38
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	82.25
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	82.21
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	81.74
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	81.57
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	81.56
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	81.54
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	81.52
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	81.46
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	81.35
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	81.21
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	81.16
1c07_A	95	Protein (epidermal growth factor receptor pathway	81.02
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	80.76
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	80.26

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=100.00  E-value=9.2e-35  Score=264.98  Aligned_cols=200  Identities=19%  Similarity=0.251  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc------------------------------------------------ccCCCCC
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQ------------------------------------------------IKGEKTN   86 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~------------------------------------------------~~~~~~~   86 (343)
                      +..+++..++|+++|+.+|...|..                                                ..+.+.|
T Consensus        13 l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~w   92 (280)
T 3ukm_A           13 FGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNW   92 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCCC
Confidence            4445555688999999999888731                                                0123459


Q ss_pred             CchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchh
Q 038674           87 GVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAA  166 (343)
Q Consensus        87 ~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
                      +|.+|+||+++|+|||||||++|.|+.||+++++|+++|++++++.++.+++.+.....+...+.++++.+.     ++.
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~  167 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGF-----SKQ  167 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC-----------CCH
T ss_pred             ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----Chh
Confidence            999999999999999999999999999999999999999999999999998876554321111111111000     010


Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-ccCccceeeEEEeEeeecccCCcccCCcc-------chhHHH
Q 038674          167 EVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVE-DLKFVDALYCVCSTITTLGYGDMSFSTRG-------GRFFAV  238 (343)
Q Consensus       167 e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e-~~~~~da~y~~~~t~tTvGyGD~~p~t~~-------gr~~~~  238 (343)
                      .       ..........+.++++++++|+++|+..| +|+|.||+||+++|+|||||||++|.++.       ||++++
T Consensus       168 ~-------~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~  240 (280)
T 3ukm_A          168 V-------VAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGIT  240 (280)
T ss_dssp             H-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHH
T ss_pred             H-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHH
Confidence            0       01112234455666778889999999988 89999999999999999999999999986       599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          239 FWILSGTICLAQFFLYLTELYTQSRQNS  266 (343)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~  266 (343)
                      +|+++|++++++.++.+++....++.++
T Consensus       241 ~~il~Gl~~~~~~~~~i~~~~~~~~l~~  268 (280)
T 3ukm_A          241 CYLLLGLIAMLVVLETFCELHELKKFRK  268 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888776544

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=100.00  E-value=9e-34  Score=262.15  Aligned_cols=197  Identities=21%  Similarity=0.342  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc------------------------------------------c---------CCC
Q 038674           56 RQVLLLLVGYLGVGALCFFLIRHQI------------------------------------------K---------GEK   84 (343)
Q Consensus        56 ~~~~~~l~~~l~~g~~~~~~~~~~~------------------------------------------~---------~~~   84 (343)
                      ..+++..++|+++|+.+|...|...                                          .         ...
T Consensus        33 l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~~~  112 (309)
T 3um7_A           33 LALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSSHS  112 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence            3456667889999999998886420                                          0         013


Q ss_pred             CCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcc
Q 038674           85 TNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVS  164 (343)
Q Consensus        85 ~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
                      .|+|.+|+||+++|+|||||||++|.|+.||+++++|+++|+++++++++.+++.+.+..++...+..+...+.     +
T Consensus       113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~-----~  187 (309)
T 3um7_A          113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKW-----H  187 (309)
T ss_dssp             CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTT-----C
T ss_pred             CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcc-----c
Confidence            49999999999999999999999999999999999999999999999999999988765443222111111111     0


Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccch------hHHH
Q 038674          165 AAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGR------FFAV  238 (343)
Q Consensus       165 ~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr------~~~~  238 (343)
                      ...     ...+....+...++.+++++++|+++|+..|+|+|.||+||+++|+|||||||++|.++.||      ++++
T Consensus       188 ~~~-----~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~  262 (309)
T 3um7_A          188 VPP-----ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVW  262 (309)
T ss_dssp             --C-----CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHH
T ss_pred             cch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHH
Confidence            000     00111112233444556778899999999999999999999999999999999999999887      4999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          239 FWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       239 ~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      +|++.|++++++.++.+++.+...
T Consensus       263 ~~il~Gl~~~a~~~~~i~~~~~~~  286 (309)
T 3um7_A          263 FWILLGLAYFASVLTTIGNWLRVV  286 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888766533

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.72  E-value=1.4e-17  Score=137.57  Aligned_cols=92  Identities=28%  Similarity=0.419  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG  134 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~  134 (343)
                      +...++++++++++++.+++..|+..+++..|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++
T Consensus         8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~   87 (139)
T 3eff_K            8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA   87 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777888899999888877777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038674          135 KAADYLVEKQQL  146 (343)
Q Consensus       135 ~~~~~~~~~~~~  146 (343)
                      .+++.+.+...+
T Consensus        88 ~i~~~~~~~~~~   99 (139)
T 3eff_K           88 ALATWFVGREQE   99 (139)
T ss_dssp             HHTTTTTHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999877665443

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.72  E-value=1.6e-17  Score=130.09  Aligned_cols=90  Identities=21%  Similarity=0.236  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG  134 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~  134 (343)
                      ....++.+++++++++.+++..|+..++++.++|.+|+||+++|+|||||||++|.|+.||+++++++++|+.++++.++
T Consensus         8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~   87 (103)
T 2k1e_A            8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566677788888898888866677778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 038674          135 KAADYLVEKQ  144 (343)
Q Consensus       135 ~~~~~~~~~~  144 (343)
                      .+.+.+.++.
T Consensus        88 ~i~~~~~~~~   97 (103)
T 2k1e_A           88 ALATDFVRRE   97 (103)
T ss_dssp             HHHTTGGGHH
T ss_pred             HHHHHHHHHH
Confidence            9998776654

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.72  E-value=1.2e-17  Score=140.00  Aligned_cols=87  Identities=29%  Similarity=0.466  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038674           58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA  137 (343)
Q Consensus        58 ~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~  137 (343)
                      .++.+++++++++.+++..|+..+++++++|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+.
T Consensus        55 ~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~  134 (155)
T 2a9h_A           55 ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVA  134 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566778888888888866677788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 038674          138 DYLVEKQ  144 (343)
Q Consensus       138 ~~~~~~~  144 (343)
                      +.+.+..
T Consensus       135 ~~~~~~~  141 (155)
T 2a9h_A          135 TWFVGRE  141 (155)
T ss_dssp             HHHHSCC
T ss_pred             HHHHHHH
Confidence            9887643

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.72  E-value=1.9e-18  Score=129.56  Aligned_cols=78  Identities=29%  Similarity=0.385  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          182 VTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELY  259 (343)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~  259 (343)
                      ...+.+++.+++.|+.+|+..|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.+++.+
T Consensus         4 ~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A            4 TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677888999999999999999999999999999999999999999999999999999999999999998764

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.71  E-value=4.5e-18  Score=133.20  Aligned_cols=84  Identities=23%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc-------CccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVEDL-------KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFL  253 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e~~-------~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~  253 (343)
                      +..+++++++++++++.+++..|++       +|.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++
T Consensus         8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~   87 (103)
T 2k1e_A            8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666777788899999999986       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 038674          254 YLTELYTQSRQ  264 (343)
Q Consensus       254 ~~~~~~~~~~~  264 (343)
                      .+++.+.++.+
T Consensus        88 ~i~~~~~~~~~   98 (103)
T 2k1e_A           88 ALATDFVRREE   98 (103)
T ss_dssp             HHHTTGGGHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988776543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.71  E-value=5.5e-17  Score=130.84  Aligned_cols=88  Identities=28%  Similarity=0.424  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038674           58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA  137 (343)
Q Consensus        58 ~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~  137 (343)
                      ....+++++++++.+++..|++.++++.|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.++
T Consensus        32 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~  111 (122)
T 2ih3_C           32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA  111 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566677888888888876777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 038674          138 DYLVEKQQ  145 (343)
Q Consensus       138 ~~~~~~~~  145 (343)
                      +.+.+..+
T Consensus       112 ~~~~~~~~  119 (122)
T 2ih3_C          112 TWFVGREQ  119 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877544

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.71  E-value=4.5e-18  Score=131.60  Aligned_cols=83  Identities=31%  Similarity=0.502  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          180 KLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELY  259 (343)
Q Consensus       180 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~  259 (343)
                      ++...+.+++++++.|+++|+..|+|+|.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~   85 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777888899999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             HHH
Q 038674          260 TQS  262 (343)
Q Consensus       260 ~~~  262 (343)
                      ...
T Consensus        86 ~~~   88 (97)
T 3ouf_A           86 QLP   88 (97)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            643

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.70  E-value=5.3e-18  Score=140.07  Aligned_cols=85  Identities=27%  Similarity=0.416  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHH
Q 038674          180 KLVTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF  252 (343)
Q Consensus       180 ~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~  252 (343)
                      .+..+++++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus         7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~   86 (139)
T 3eff_K            7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT   86 (139)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677788889999999998       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038674          253 LYLTELYTQSRQ  264 (343)
Q Consensus       253 ~~~~~~~~~~~~  264 (343)
                      +.+++.+.+...
T Consensus        87 ~~i~~~~~~~~~   98 (139)
T 3eff_K           87 AALATWFVGREQ   98 (139)
T ss_dssp             HHHTTTTTHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988765544

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.70  E-value=5.3e-17  Score=121.63  Aligned_cols=78  Identities=28%  Similarity=0.599  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674           56 RQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGK  135 (343)
Q Consensus        56 ~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~  135 (343)
                      ..++.+++.+++.++..|+..|+       |++.||+||+++|+||+||||++|.|+.||++++++++.|++++++.++.
T Consensus         4 ~~~~~l~~~~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~   76 (82)
T 3ldc_A            4 TRILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVER   76 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788889999988887       89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 038674          136 AADYL  140 (343)
Q Consensus       136 ~~~~~  140 (343)
                      +++.+
T Consensus        77 i~~~l   81 (82)
T 3ldc_A           77 LLEFL   81 (82)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.69  E-value=9.8e-18  Score=133.58  Aligned_cols=80  Identities=30%  Similarity=0.469  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT  260 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~  260 (343)
                      +...+.++++++++|+++++..|+|+|.||+||+++|+|||||||++|.++.||++++++++.|++++++.++.+.+.+.
T Consensus        24 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~  103 (114)
T 2q67_A           24 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ  103 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677788999999999999999999999999999999999999999999999999999999999999988764

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.69  E-value=2e-18  Score=142.17  Aligned_cols=68  Identities=26%  Similarity=0.321  Sum_probs=59.4

Q ss_pred             HHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          195 GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       195 g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      ++..+...|.|+|.||+||+++|+|||||||++|.|+.||++++++++.|+++++++++.+++.+.+.
T Consensus        32 ~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~   99 (137)
T 4h33_A           32 VPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK   99 (137)
T ss_dssp             HHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334459999999999999999999999999999999999999999999999999999877644

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.68  E-value=1e-16  Score=127.71  Aligned_cols=80  Identities=29%  Similarity=0.534  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL  133 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~  133 (343)
                      ++...+++++++++.|++.|+..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.+
T Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~   95 (114)
T 2q67_A           23 EFQVLFVLTILTLISGTIFYSTVEG-------LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFI   95 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777788889988887776       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 038674          134 GKAADYL  140 (343)
Q Consensus       134 ~~~~~~~  140 (343)
                      +.+.+.+
T Consensus        96 ~~l~~~~  102 (114)
T 2q67_A           96 HKLAVNV  102 (114)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988766

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.68  E-value=1.5e-16  Score=122.92  Aligned_cols=82  Identities=30%  Similarity=0.555  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL  133 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~  133 (343)
                      ++...+++++++++.|+..|+..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.+
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i   78 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVEG-------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFI   78 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777888888888887766       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          134 GKAADYLVE  142 (343)
Q Consensus       134 ~~~~~~~~~  142 (343)
                      +.+++.+..
T Consensus        79 ~~i~~~~~~   87 (97)
T 3ouf_A           79 HKLAVNVQL   87 (97)
T ss_dssp             HHHHHHTHH
T ss_pred             HHHHHHHhH
Confidence            999987654

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.68  E-value=2.4e-17  Score=137.51  Aligned_cols=78  Identities=29%  Similarity=0.450  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTEL  258 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~  258 (343)
                      +...+.++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.
T Consensus        27 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~  104 (148)
T 3vou_A           27 FQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVN  104 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677778889999999999999999999999999999999999999999999999999999999999888763

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.66  E-value=6.6e-16  Score=128.81  Aligned_cols=78  Identities=31%  Similarity=0.546  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL  133 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~  133 (343)
                      .+..++++++++++.|+++|...|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~   98 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYSTVEG-------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFI   98 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777788888888887765       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 038674          134 GKAAD  138 (343)
Q Consensus       134 ~~~~~  138 (343)
                      +.++.
T Consensus        99 ~~~~~  103 (148)
T 3vou_A           99 HKLAV  103 (148)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98875

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.66  E-value=3.9e-17  Score=131.77  Aligned_cols=82  Identities=28%  Similarity=0.478  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674          183 TATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL  255 (343)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~  255 (343)
                      ..+..+++++++++.+++..|+       |++.||+||+++|+|||||||++|.|+.||++++++++.|+.++++.++.+
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i  110 (122)
T 2ih3_C           31 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL  110 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666778888888887       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          256 TELYTQSRQ  264 (343)
Q Consensus       256 ~~~~~~~~~  264 (343)
                      ++.+.+..+
T Consensus       111 ~~~~~~~~~  119 (122)
T 2ih3_C          111 ATWFVGREQ  119 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998886644

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.65  E-value=6.9e-17  Score=132.90  Aligned_cols=83  Identities=28%  Similarity=0.577  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG  134 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~  134 (343)
                      +..+++++++.+++++..+++.+.     +.|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++
T Consensus        16 l~~~l~~~~~~~~~~~~~~~~~e~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~   90 (137)
T 4h33_A           16 LNRFLMIFVLLVIIIPVPMVFIEP-----EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITS   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHCS-----SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444443     348999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 038674          135 KAADYLVE  142 (343)
Q Consensus       135 ~~~~~~~~  142 (343)
                      .+++.+.+
T Consensus        91 ~i~~~~~~   98 (137)
T 4h33_A           91 TITNFFRC   98 (137)
T ss_dssp             HHHTTTTT
T ss_pred             HHHHHHHH
Confidence            99987754

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.65  E-value=3.2e-17  Score=137.50  Aligned_cols=82  Identities=29%  Similarity=0.451  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc-------CccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674          183 TATFILLVLIIAGIVFLSVVEDL-------KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL  255 (343)
Q Consensus       183 ~~~~~~~~~~~~g~~~~~~~e~~-------~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~  255 (343)
                      .+++.+++++++++.+++..|++       +|.||+||+++|+|||||||++|.|+.||++++++++.|+++++++++.+
T Consensus        54 ~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i  133 (155)
T 2a9h_A           54 AATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV  133 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566677888888898987       89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          256 TELYTQSRQ  264 (343)
Q Consensus       256 ~~~~~~~~~  264 (343)
                      ++.+.+..+
T Consensus       134 ~~~~~~~~~  142 (155)
T 2a9h_A          134 ATWFVGREQ  142 (155)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHHHHHHH
Confidence            998886644

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.56  E-value=1.4e-14  Score=128.66  Aligned_cols=89  Identities=22%  Similarity=0.518  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG  134 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~  134 (343)
                      +..++..+++++.+++..++..|++.++++.++|.+|+||+++|+||+||||++|.|+.||+++++++++|+.++++.++
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555566667778888888766667779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          135 KAADYLVEK  143 (343)
Q Consensus       135 ~~~~~~~~~  143 (343)
                      .+++.+.++
T Consensus       213 ~i~~~~~~~  221 (223)
T 1orq_C          213 TVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.55  E-value=1.4e-17  Score=141.55  Aligned_cols=81  Identities=28%  Similarity=0.456  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038674          184 ATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLT  256 (343)
Q Consensus       184 ~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~  256 (343)
                      +++++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.++
T Consensus        38 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~  117 (166)
T 3pjs_K           38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA  117 (166)
T ss_dssp             TSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666777888888888       9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 038674          257 ELYTQSRQ  264 (343)
Q Consensus       257 ~~~~~~~~  264 (343)
                      +.+.+...
T Consensus       118 ~~~~~~~~  125 (166)
T 3pjs_K          118 TWFVGQEQ  125 (166)
T ss_dssp             SSSSSSHH
T ss_pred             HHHHHHHH
Confidence            88775543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.53  E-value=2.4e-15  Score=151.42  Aligned_cols=133  Identities=23%  Similarity=0.363  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----hcc--cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSV----VED--LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY  254 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~----~e~--~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~  254 (343)
                      +...++++++++++++.+|+.    .|+  |+|.||+||+++|+|||||||++|.|+.||+|+++++++|++++++.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~   99 (565)
T 4gx0_A           20 LLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF   99 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555554444    566  99999999999999999999999999999999999999999999999987


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCccee----hHHHHHHHHHHcCC------CCHHHHHHHHHH
Q 038674          255 -LTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVS----VAEFVIYKLKEMGK------INEEDISVLMER  319 (343)
Q Consensus       255 -~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~----~~e~v~~~L~~~~~------i~~e~i~~~~~~  319 (343)
                       +++.+.....++..+   .+++.   .....+++|.++|    .+..+.+.|.+.+.      .+++.++++.++
T Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~  169 (565)
T 4gx0_A          100 GFVSMFLAPWIERRLR---YHPTI---ELPDDTRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQ  169 (565)
T ss_dssp             HHHHHHHHHHHHHHTS---CCCBC---CCCTTCCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH---hhccc---ccccccCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh
Confidence             777766654433221   11111   1135678888887    46677777776664      356666666554

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.52  E-value=9.3e-17  Score=136.52  Aligned_cols=83  Identities=30%  Similarity=0.464  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           61 LLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYL  140 (343)
Q Consensus        61 ~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~  140 (343)
                      .+++++++++.+++..|+..+++..|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+++.+
T Consensus        41 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~  120 (166)
T 3pjs_K           41 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF  120 (166)
T ss_dssp             SSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777778766777789999999999999999999999999999999999999999999999999988776


Q ss_pred             HHH
Q 038674          141 VEK  143 (343)
Q Consensus       141 ~~~  143 (343)
                      .+.
T Consensus       121 ~~~  123 (166)
T 3pjs_K          121 VGQ  123 (166)
T ss_dssp             SSS
T ss_pred             HHH
Confidence            643

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.47  E-value=1.4e-13  Score=122.32  Aligned_cols=82  Identities=22%  Similarity=0.350  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHH
Q 038674          181 LVTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFL  253 (343)
Q Consensus       181 ~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~  253 (343)
                      +...+..++.++.+++.+++..|+       ++|.||+||+++|+|||||||++|.|+.||++++++++.|+++++++++
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555666677778888887       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 038674          254 YLTELYTQS  262 (343)
Q Consensus       254 ~~~~~~~~~  262 (343)
                      .+++.+.++
T Consensus       213 ~i~~~~~~~  221 (223)
T 1orq_C          213 TVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888754

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.47  E-value=5.9e-14  Score=127.82  Aligned_cols=84  Identities=21%  Similarity=0.425  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCch-------hhHHHHHHHHHHHHHHHH
Q 038674           59 LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTL-------AKLLACVYVFSGMALVGL  131 (343)
Q Consensus        59 ~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~-------gr~~~~~~~l~Gi~~~~~  131 (343)
                      ++.+++++++|+.+|+..|++      |+|.||+||+++|+|||||||++|.++.       ||+++++|+++|++++++
T Consensus       179 ~~~~~~~~~~ga~~~~~~E~~------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~  252 (280)
T 3ukm_A          179 FVTVSCFFFIPAAVFSVLEDD------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLV  252 (280)
T ss_dssp             HHHHHHHTHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHhcC------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence            445566778899999887732      9999999999999999999999999985       599999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 038674          132 ILGKAADYLVEKQQLLL  148 (343)
Q Consensus       132 ~~~~~~~~~~~~~~~~~  148 (343)
                      .++.+.+....++.+..
T Consensus       253 ~~~~i~~~~~~~~l~~~  269 (280)
T 3ukm_A          253 VLETFCELHELKKFRKM  269 (280)
T ss_dssp             HHHHHHTSHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999987776654443

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.43  E-value=3.7e-13  Score=127.67  Aligned_cols=92  Identities=28%  Similarity=0.451  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674           54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL  133 (343)
Q Consensus        54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~  133 (343)
                      .+..++.++++.+.+++.+++..|+..+++++.++.+|+||+++|+||+||||++|.|+.||+++++++++|+.++++.+
T Consensus       128 ~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~  207 (355)
T 3beh_A          128 NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA  207 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666777777777775555556799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038674          134 GKAADYLVEKQQ  145 (343)
Q Consensus       134 ~~~~~~~~~~~~  145 (343)
                      +.+++.+.+..+
T Consensus       208 ~~i~~~~~~~~~  219 (355)
T 3beh_A          208 GILATGFYQEVR  219 (355)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988876543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.41  E-value=7e-16  Score=145.44  Aligned_cols=83  Identities=31%  Similarity=0.389  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          184 ATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       184 ~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      .++++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE  102 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566788999999999999999999999999999999999999999999999999999999999999998887765


Q ss_pred             HHH
Q 038674          264 QNS  266 (343)
Q Consensus       264 ~~~  266 (343)
                      .++
T Consensus       103 ~~~  105 (336)
T 1lnq_A          103 QMK  105 (336)
T ss_dssp             ---
T ss_pred             HHH
Confidence            444

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.39  E-value=9.6e-13  Score=121.78  Aligned_cols=76  Identities=24%  Similarity=0.425  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           67 GVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        67 ~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      ++.+.+|++.++..++...++|.+|+||+++|+|||||||++|.++.||+++++++++|+.++++.++.+...+.+
T Consensus        62 l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           62 ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             HHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344446666544555567999999999999999999999999999999999999999999999999988876643

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.37  E-value=1.2e-12  Score=129.98  Aligned_cols=97  Identities=19%  Similarity=0.233  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          187 ILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELY  259 (343)
Q Consensus       187 ~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~  259 (343)
                      +++++.++|++++. .|+       .++.+|+||+++|+|||||||+.|.+..||+|++++++.|+++++++++.+.+.+
T Consensus       350 l~i~~~if~~~~~~-~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f  428 (514)
T 2r9r_B          350 LFIGVILFSSAVYF-AEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF  428 (514)
T ss_dssp             HHHHHHHHHHHHHH-HHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHhhhhe-eeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHH
Confidence            33444555665554 455       3789999999999999999999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHHHHhhccccchhhhhccCCCcceehHH
Q 038674          260 TQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAE  296 (343)
Q Consensus       260 ~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~~~e  296 (343)
                      .....++.         .   -+..++++|.++|...
T Consensus       429 ~~~~~~~~---------~---~~~~~l~~h~iicg~~  453 (514)
T 2r9r_B          429 NYFYHRET---------E---GEEQAQYLQVTSSPKI  453 (514)
T ss_dssp             HHHHHHHC-----------------------------
T ss_pred             HHHHHHHH---------H---HHHHHhhCCEEEeCCC
Confidence            64432211         0   0124466777777543

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.36  E-value=1.3e-12  Score=122.35  Aligned_cols=77  Identities=27%  Similarity=0.467  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           67 GVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus        67 ~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      ++++++|++......+...++|.+|+||+++|+|||||||++|.++.||+++++++++|+.+++++++.+...+.+.
T Consensus        76 l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~  152 (333)
T 1p7b_A           76 TLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP  152 (333)
T ss_dssp             HHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444544433223444567999999999999999999999999999999999999999999999999988877543

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=121.20  Aligned_cols=75  Identities=27%  Similarity=0.479  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhh------HHHHHHHHHHHHHHHHHH
Q 038674           60 LLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAK------LLACVYVFSGMALVGLIL  133 (343)
Q Consensus        60 ~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr------~~~~~~~l~Gi~~~~~~~  133 (343)
                      +.+++++++|+.+|+..|+       |+|.||+||+++|+|||||||++|.+..||      +++++|+++|++++++++
T Consensus       204 ~~~~~~l~~ga~~~~~~E~-------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~  276 (309)
T 3um7_A          204 IGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL  276 (309)
T ss_dssp             HHHHHHTHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3345677788888888876       999999999999999999999999999887      599999999999999999


Q ss_pred             HHHHHHHH
Q 038674          134 GKAADYLV  141 (343)
Q Consensus       134 ~~~~~~~~  141 (343)
                      +.+++.+.
T Consensus       277 ~~i~~~~~  284 (309)
T 3um7_A          277 TTIGNWLR  284 (309)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            98877653

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.34  E-value=3.6e-12  Score=118.85  Aligned_cols=57  Identities=32%  Similarity=0.575  Sum_probs=54.0

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      ++|.+|+||+++|+|||||||+.|.|..||+++++++++|+.+++++++.+.+.+.+
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999998877654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.30  E-value=1.3e-12  Score=124.02  Aligned_cols=86  Identities=23%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-------CccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHH
Q 038674          180 KLVTATFILLVLIIAGIVFLSVVEDL-------KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF  252 (343)
Q Consensus       180 ~~~~~~~~~~~~~~~g~~~~~~~e~~-------~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~  252 (343)
                      .+...+.++++++.+++.+++..|++       ++.||+||+++|+|||||||++|.|+.||++++++++.|++++++.+
T Consensus       128 ~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~  207 (355)
T 3beh_A          128 NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA  207 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556666777777777874       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 038674          253 LYLTELYTQSRQN  265 (343)
Q Consensus       253 ~~~~~~~~~~~~~  265 (343)
                      +.+++.+.+..++
T Consensus       208 ~~i~~~~~~~~~~  220 (355)
T 3beh_A          208 GILATGFYQEVRR  220 (355)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888765443

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.28  E-value=1.1e-12  Score=121.39  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT  260 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~  260 (343)
                      ++|.||+||+++|+|||||||++|.++.||++++++++.|++++++.++.+.+.+.
T Consensus        81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~  136 (301)
T 1xl4_A           81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  136 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999998887665

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.28  E-value=5.4e-12  Score=126.89  Aligned_cols=88  Identities=24%  Similarity=0.354  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674           56 RQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGK  135 (343)
Q Consensus        56 ~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~  135 (343)
                      ...++++++++++++++|++....+++ ..|+|.+|+||+++|+||+||||++|.|+.||+++++++++|++++++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~   99 (565)
T 4gx0_A           21 LLYCAFLLVMLLAYASIFRYLMWHLEG-RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF   99 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555556666666655443333 3389999999999999999999999999999999999999999999999987


Q ss_pred             -HHHHHHHHH
Q 038674          136 -AADYLVEKQ  144 (343)
Q Consensus       136 -~~~~~~~~~  144 (343)
                       +.+.+....
T Consensus       100 ~~~~~~~~~~  109 (565)
T 4gx0_A          100 GFVSMFLAPW  109 (565)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             666665543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.27  E-value=1.9e-11  Score=121.31  Aligned_cols=77  Identities=19%  Similarity=0.394  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           66 LGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus        66 l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      .+.|+++| ..++..+++++.++.+|+||+++|+||+||||+.|.|+.||+++++++++|+.+++++++.+.+.+.+.
T Consensus       355 ~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          355 ILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444 445555667778999999999999999999999999999999999999999999999999988766543

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.26  E-value=7.9e-13  Score=123.72  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHhhc-------ccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          186 FILLVLIIAGIVFLSVVE-------DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTEL  258 (343)
Q Consensus       186 ~~~~~~~~~g~~~~~~~e-------~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~  258 (343)
                      +++++.+++++++|+...       ..+|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++.+.+.
T Consensus        69 ~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~  148 (333)
T 1p7b_A           69 ALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFAR  148 (333)
T ss_dssp             HHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666654422       2589999999999999999999999999999999999999999999999999887


Q ss_pred             HHHH
Q 038674          259 YTQS  262 (343)
Q Consensus       259 ~~~~  262 (343)
                      +...
T Consensus       149 ~~~~  152 (333)
T 1p7b_A          149 FARP  152 (333)
T ss_dssp             HTSC
T ss_pred             HHHH
Confidence            7644

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.25  E-value=4.9e-14  Score=132.79  Aligned_cols=83  Identities=25%  Similarity=0.534  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038674           58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA  137 (343)
Q Consensus        58 ~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~  137 (343)
                      .++++++++++|+++|+..|+       |+|.+|+||+++|+||+||||++|.|+.||+++++++++|++++++.++.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~   95 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL   95 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455667778888877765       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 038674          138 DYLVEKQQLL  147 (343)
Q Consensus       138 ~~~~~~~~~~  147 (343)
                      +.+.++..+.
T Consensus        96 ~~~~~~~~~~  105 (336)
T 1lnq_A           96 EFLINREQMK  105 (336)
T ss_dssp             TTC-------
T ss_pred             HHHHHHHHHH
Confidence            8887765443

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.24  E-value=2.4e-12  Score=119.99  Aligned_cols=58  Identities=26%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      ++|.||+||+++|+|||||||++|.+..||++++++++.|++++++.++.+.+.+...
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~  134 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP  134 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999877644

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.11  E-value=2.8e-10  Score=106.32  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             cchhhHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhh---hcccC----------CCCCCchhhhhhhhhhhc
Q 038674           38 KSLLPLESALMSQEEIRFRQVLLLLVGYLG----VGALCFFLIR---HQIKG----------EKTNGVLDSIYFCIVTMT  100 (343)
Q Consensus        38 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~----~g~~~~~~~~---~~~~~----------~~~~~~~~a~y~~~~t~t  100 (343)
                      .+.+-+.+++.....++|+.+++++++..+    +.+++|++..   ++.+.          .+..++.+++||+++|+|
T Consensus        25 ~~~~~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~T  104 (340)
T 3sya_A           25 ETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETET  104 (340)
T ss_dssp             CTHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHS
T ss_pred             cchHHHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeee
Confidence            344456666666555555555554444333    3334444332   22211          134689999999999999


Q ss_pred             ccccCccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          101 TVGYGDLVPH--STLAKLLACVYVFSGMALVGLILGKAADYLVEK  143 (343)
Q Consensus       101 TvGyGd~~p~--t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  143 (343)
                      ||||||++|.  ++.|++++.+.+++|+.+.++.++.+...+.+.
T Consensus       105 TvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp  149 (340)
T 3sya_A          105 TIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP  149 (340)
T ss_dssp             CCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             eecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999997  789999999999999999999999888766543

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.96  E-value=3.2e-09  Score=99.28  Aligned_cols=58  Identities=26%  Similarity=0.425  Sum_probs=52.5

Q ss_pred             CCCchhhhhhhhhhhcccccCccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           85 TNGVLDSIYFCIVTMTTVGYGDLVPH--STLAKLLACVYVFSGMALVGLILGKAADYLVE  142 (343)
Q Consensus        85 ~~~~~~a~y~~~~t~tTvGyGd~~p~--t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~  142 (343)
                      ..++.+++||+++|+|||||||++|.  ++.|++++.+.+++|+.+.++.++.+...+.+
T Consensus        92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A           92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999874  89999999999999999999999988776543

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.95  E-value=5.4e-10  Score=104.41  Aligned_cols=60  Identities=23%  Similarity=0.259  Sum_probs=53.7

Q ss_pred             cCccceeeEEEeEeeecccCCcccC--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFS--TRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ  264 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~--t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  264 (343)
                      -++.||+||+++|+|||||||+.|.  ++.|++++.+.+++|+.+.+..++.+..-+...+.
T Consensus        90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~  151 (340)
T 3sya_A           90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK  151 (340)
T ss_dssp             CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            3789999999999999999999997  67899999999999999999999998877765543

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.83  E-value=1.1e-09  Score=102.54  Aligned_cols=58  Identities=22%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             cCccceeeEEEeEeeecccCCcccC--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFS--TRGGRFFAVFWILSGTICLAQFFLYLTELYTQS  262 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~--t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (343)
                      .++.+|+||+++|+|||||||+.|.  ++.|++++.+.++.|+.+++..++.+..-+...
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp  152 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARP  152 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4789999999999999999999974  789999999999999999999999888766543

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.66  E-value=3.9e-09  Score=96.88  Aligned_cols=60  Identities=10%  Similarity=0.094  Sum_probs=49.3

Q ss_pred             cCccceeeEEEeEeeecccC-Ccc-cCCccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYG-DMS-FSTRGG----RFFAVFWILSGTICLAQFFLYLTELYTQSRQ  264 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyG-D~~-p~t~~g----r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  264 (343)
                      -++.+|+||.++|+||+||| |+. |.+..|    ++|+.++++.|+.+++.+++.+.+.+.+...
T Consensus       179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~  244 (285)
T 3rvy_A          179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ  244 (285)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999 996 877755    7888888899999999999999998876543

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.60  E-value=6.2e-08  Score=88.83  Aligned_cols=80  Identities=14%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccC-ccc-cCCchh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           65 YLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYG-DLV-PHSTLA----KLLACVYVFSGMALVGLILGKAAD  138 (343)
Q Consensus        65 ~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyG-d~~-p~t~~g----r~~~~~~~l~Gi~~~~~~~~~~~~  138 (343)
                      +.+.+.+++.+.++ ..++++.++.+|+||+++++||+||| |+. |.+..|    +.++++.++.|+.+++++++.+.+
T Consensus       159 ~~~fa~~g~~~f~~-~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~  237 (285)
T 3rvy_A          159 FYIFAIMATQLFGE-RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD  237 (285)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444433 33445789999999999999999999 996 887754    788888999999999999999998


Q ss_pred             HHHHHHH
Q 038674          139 YLVEKQQ  145 (343)
Q Consensus       139 ~~~~~~~  145 (343)
                      .+.+..+
T Consensus       238 ~f~~~~~  244 (285)
T 3rvy_A          238 AMAILNQ  244 (285)
T ss_dssp             HC-----
T ss_pred             HHHHHHH
Confidence            8765433

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=97.04  E-value=0.0024  Score=56.06  Aligned_cols=74  Identities=7%  Similarity=0.071  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCcccc----CCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 038674           67 GVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP----HSTLAKLLACVYVFS-GMALVGLILGKAADYLV  141 (343)
Q Consensus        67 ~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p----~t~~gr~~~~~~~l~-Gi~~~~~~~~~~~~~~~  141 (343)
                      +.+.+++.+.++ .+++++.++.+|+|+.+.++||.||+|+..    .++.+.++.+.|.++ +..++.+.++.+.+.+.
T Consensus       146 ifa~~g~~lf~~-~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          146 IYATMGAILFGN-DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             HHHHHHHHHTTT-TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444554444 455678999999999999999999999732    345556555555444 46666777777666554

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=96.68  E-value=0.002  Score=66.74  Aligned_cols=124  Identities=18%  Similarity=0.314  Sum_probs=77.0

Q ss_pred             CcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c------------
Q 038674           16 PLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQ---I------------   80 (343)
Q Consensus        16 ~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~---~------------   80 (343)
                      .+..|.||+.+++.+.++...... ..+..++..+.. .++..  +++.+++++.++|.+....   +            
T Consensus       479 ~~dfs~py~~~~~~~~v~~~~~~~-~~~~~fl~Pf~~-~vW~~--i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~  554 (823)
T 3kg2_A          479 VIDFSKPFMSLGISIMIKKPQKSK-PGVFSFLDPLAY-EIWMC--IVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQ  554 (823)
T ss_dssp             TEEECSCSEEECEEEEEECCCCCC-CCGGGTTTTSCH-HHHHH--HHHHHHHHHTTGGGTC-------------------
T ss_pred             eEEeccchhhCCEEEEEECCCccc-ccchHhhcCCch-hHHHH--HHHHHHHHHHHHHHHHhcChhhccCcccccccccc
Confidence            356789999999998876544322 223344444444 33322  2333333344433332210   0            


Q ss_pred             --cCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           81 --KGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus        81 --~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                        ...+..++.+++||++.+++..| ++..|.+..+|++.++|+++++.+.+...+.+.++++...
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~  619 (823)
T 3kg2_A          555 SSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER  619 (823)
T ss_dssp             ----CHHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence              00112347789999999999988 7889999999999999999999999999999999887643

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=96.00  E-value=0.0039  Score=61.11  Aligned_cols=151  Identities=13%  Similarity=0.126  Sum_probs=74.7

Q ss_pred             CchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHhhhccccCC
Q 038674           87 GVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGL--ILGKAAD-YLVEKQQLLLVKAMYNYENASAG  161 (343)
Q Consensus        87 ~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
                      .+.+|++-+.+..||.||.  |...-++..+.+.++.|++|-+--+.  -+-...- .+.....+...+..+.+ ....-
T Consensus       306 ~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~-~v~~v  384 (494)
T 3pjz_A          306 AFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPR-AVYTI  384 (494)
T ss_dssp             HHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSS-SCCCC
T ss_pred             HHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCC-cceee
Confidence            4567788888888999996  55555666777777777765321100  0000000 01111111112222211 11000


Q ss_pred             CcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeeccc--CCccc----CCccchh
Q 038674          162 SVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGY--GDMSF----STRGGRF  235 (343)
Q Consensus       162 ~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGy--GD~~p----~t~~gr~  235 (343)
                      +...    |+++++.. .+....+++.+..+.+++++... .+.++.+++.=++.+++|||.  |.+-|    .++.+|+
T Consensus       385 ~~~~----r~i~~~~v-~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~  458 (494)
T 3pjz_A          385 KVGG----SALPQRVV-DAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKW  458 (494)
T ss_dssp             CSSS----CCCTTTHH-HHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHH
T ss_pred             eECC----EECCHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHH
Confidence            1111    11111111 12222233333444445555444 357888998888888999984  43323    4567898


Q ss_pred             HHHHHHHHH
Q 038674          236 FAVFWILSG  244 (343)
Q Consensus       236 ~~~~~~~~g  244 (343)
                      +.++.|++|
T Consensus       459 vl~~~M~~G  467 (494)
T 3pjz_A          459 VLIVSMLFG  467 (494)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877765

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=95.73  E-value=0.0024  Score=55.99  Aligned_cols=75  Identities=11%  Similarity=0.115  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCccc----CCccchhHHHHHHH-HHHHHHHHHHHHH
Q 038674          187 ILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSF----STRGGRFFAVFWIL-SGTICLAQFFLYL  255 (343)
Q Consensus       187 ~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p----~t~~gr~~~~~~~~-~g~~~~~~~~~~~  255 (343)
                      +++.+.+.+.+++...++      -++.+|+|+.+.++||.|++|+..    .++.+.++.+.+++ .+..++..+++.+
T Consensus       140 l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi  219 (229)
T 4dxw_A          140 LFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAIL  219 (229)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555543      457889999999999999999743    23344544444444 4566677777777


Q ss_pred             HHHHHH
Q 038674          256 TELYTQ  261 (343)
Q Consensus       256 ~~~~~~  261 (343)
                      .+.+.+
T Consensus       220 ~~~f~~  225 (229)
T 4dxw_A          220 VDVVIQ  225 (229)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            776654

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=93.74  E-value=0.026  Score=58.33  Aligned_cols=56  Identities=20%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             ccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          207 FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR  263 (343)
Q Consensus       207 ~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  263 (343)
                      +.+++||++.+++..| ++..|.+..+|++.++|+++++++.+...+.+++.++..+
T Consensus       564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~  619 (823)
T 3kg2_A          564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER  619 (823)
T ss_dssp             HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5688999999999999 7889999999999999999999999999999999988543

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=90.20  E-value=0.2  Score=48.97  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             CCchhhhhhhhhhhcccccCcc----ccC-CchhhHHHHHHHHHH
Q 038674           86 NGVLDSIYFCIVTMTTVGYGDL----VPH-STLAKLLACVYVFSG  125 (343)
Q Consensus        86 ~~~~~a~y~~~~t~tTvGyGd~----~p~-t~~gr~~~~~~~l~G  125 (343)
                      .+++||+..++.+++|-||.-.    .+- ++.-.+.+++++++|
T Consensus       205 m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~~s~~i~~vi~~~milg  249 (494)
T 3pjz_A          205 MTPFDAISHSFSTIAIGGFSTHDASMGYFDSYAINLITVVFLLIS  249 (494)
T ss_dssp             CCSHHHHTTTHHHHTTCCCCSSTTGGGSSCCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCCCCCccchhhhhcCHHHHHHHHHHHHHH
Confidence            5788999999999999998532    111 333355555555554

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=89.84  E-value=0.32  Score=35.62  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=19.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +++++..++.+.|+.+|.|++|.++.+++.
T Consensus         3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~   32 (92)
T 1fi6_A            3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            345566666666666666666666666654

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=89.23  E-value=0.2  Score=37.59  Aligned_cols=32  Identities=22%  Similarity=0.486  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          307 KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       307 ~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .++++++.++.+.|+..|.|++|.++.+|+..
T Consensus        29 ~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~   60 (100)
T 2lv7_A           29 DIPEDELEEIREAFKVFDRDGNGFISKQELGT   60 (100)
T ss_dssp             CCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence            46677778888888888888888888888754

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=88.06  E-value=0.44  Score=33.81  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .++++...+.+.|+..|.|++|.|+.+++.
T Consensus         5 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~   34 (86)
T 2opo_A            5 DTPQDIADRERIFKRFDTNGDGKISSSELG   34 (86)
T ss_dssp             -CHHHHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             CCHhhHHHHHHHHHHHCCCCCCCcCHHHHH
Confidence            455566666666666666666666666654

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=87.87  E-value=0.49  Score=32.61  Aligned_cols=29  Identities=21%  Similarity=0.452  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          309 NEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       309 ~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +++++..+.+.|...|.|++|.++.+++.
T Consensus         2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~   30 (77)
T 2joj_A            2 SEEQKQEIKEAFDLFDTNKTGSIDYHELK   30 (77)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            44556666666666666666666666654

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=87.55  E-value=1.7  Score=28.66  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|.. ..+...+ ..+++++..+   |...|.|++|.++.++...
T Consensus         9 ~~D~d~~G~i~~~el~-~~l~~~~~~~~~~~~~~~---~~~~D~~~dg~i~~~ef~~   61 (67)
T 1tiz_A            9 KFDKNKDGKLSLDEFR-EVALAFSPYFTQEDIVKF---FEEIDVDGNGELNADEFTS   61 (67)
T ss_dssp             HHCTTSSSCEEHHHHH-HHHHHTCTTSCHHHHHHH---HHHHCCSSSSEECHHHHHH
T ss_pred             HHCCCCCCcCcHHHHH-HHHHHhCCCCCHHHHHHH---HHHHCCCCCCcCcHHHHHH
Confidence            3456778888877754 4455544 4577766664   5566899999999998764

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=87.19  E-value=0.39  Score=35.44  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          309 NEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       309 ~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      ++++..++.+.|+.+|.|++|.++.+++.
T Consensus         5 s~~~~~~~~~~F~~~D~d~dG~I~~~el~   33 (95)
T 1c07_A            5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVR   33 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            44556666666666666666666666654

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=86.19  E-value=1.7  Score=35.56  Aligned_cols=56  Identities=14%  Similarity=0.043  Sum_probs=36.1

Q ss_pred             hhccCCCcceehHHHHHHHHHH------cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKE------MGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~------~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..+.++++.|+..|++...-..      ........-..+...|+..|.|++|.|+.+++..
T Consensus        72 ~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~  133 (191)
T 2ccm_A           72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST  133 (191)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred             hcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4556778888888876554332      2222333334566678888888888888888754

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=86.09  E-value=1.4  Score=36.59  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             hhccCCCcceehHHHHHHHHHH---cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKE---MGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~---~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|+.... ..   ...+++++.+.+.+-|+..|.|++|.++.+|...
T Consensus       130 ~~D~d~~G~Is~~El~~~l-~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~  187 (191)
T 3k21_A          130 VFDVDNDGEITTAELAHIL-YNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE  187 (191)
T ss_dssp             HHSTTCSSCBCHHHHHHHH-HHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHH
T ss_pred             HhCCCCCCcCCHHHHHHHH-HhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHH
Confidence            4566788899887754443 33   2356787777888889999999999999998764

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=85.49  E-value=0.8  Score=37.11  Aligned_cols=51  Identities=22%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             CCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          287 DHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       287 ~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      ++.+.++-.||+...-....+......+.+.+.|+..|.|++|.++.+++.
T Consensus        58 ~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~  108 (159)
T 3i5g_C           58 MGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIR  108 (159)
T ss_dssp             TTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHH
T ss_pred             cCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHH
Confidence            455667777776544333333222222345567888888888888888875

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=85.24  E-value=0.52  Score=36.99  Aligned_cols=19  Identities=32%  Similarity=0.677  Sum_probs=8.5

Q ss_pred             HHHhhcCCCCCcceehhhH
Q 038674          318 ERFRTLDADQSGNLTTADI  336 (343)
Q Consensus       318 ~~f~~ld~~~~g~l~~~d~  336 (343)
                      +.|+..|.|++|.++.+++
T Consensus        91 ~~F~~~D~d~~G~I~~~el  109 (151)
T 1w7j_B           91 EGFRVFDKEGNGKVMGAEL  109 (151)
T ss_dssp             HHHHTTCTTSSSEEEHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHH
Confidence            3444444444444444443

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=84.97  E-value=0.8  Score=34.88  Aligned_cols=30  Identities=20%  Similarity=0.230  Sum_probs=20.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +++++..++.+.|+..|.|++|.|+.+++.
T Consensus         8 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~   37 (111)
T 2kgr_A            8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQAR   37 (111)
T ss_dssp             SCHHHHHHHHHHHHTTSCSSCCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            455666666677777777777777777664

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=84.81  E-value=0.55  Score=33.33  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .+++++.++.+.|...|.|++|.|+.+|+..
T Consensus         8 l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   38 (86)
T 1j7q_A            8 LGPEEKDECMKIFDIFDRNAENIAPVSDTMD   38 (86)
T ss_dssp             CSSTHHHHHHHHHHHHSTTTTSCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4556667777777777777778777777653

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=84.76  E-value=1.9  Score=33.43  Aligned_cols=55  Identities=16%  Similarity=0.315  Sum_probs=38.9

Q ss_pred             hccCCCcceehHHHHHHHHHHcCCCCHH--HHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          284 ADLDHDKLVSVAEFVIYKLKEMGKINEE--DISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       284 ~~l~~~~~v~~~e~v~~~L~~~~~i~~e--~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .+.++++.|+..|++............+  ....+...|+..|.|++|.|+.+++..
T Consensus        56 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  112 (153)
T 3ox6_A           56 INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELRE  112 (153)
T ss_dssp             HHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             hCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3456778888888877665444443322  245677789999999999999998864

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=84.56  E-value=0.78  Score=32.86  Aligned_cols=31  Identities=29%  Similarity=0.499  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .+++++..+.+.|...|.|++|.|+.+++..
T Consensus        14 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   44 (90)
T 1avs_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGT   44 (90)
T ss_dssp             BCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            4566677777777777777777777777653

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=84.22  E-value=0.54  Score=36.41  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             CCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          287 DHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       287 ~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      ++++.|+..|++...-.......++....+...|+..|.|++|.++.+++.
T Consensus        49 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~   99 (140)
T 1ggw_A           49 TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELR   99 (140)
T ss_dssp             TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            456667766665544322222222233455566777777777777777765

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=84.09  E-value=1  Score=29.78  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=33.8

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|+... +...+ ..+++   .+..-|...|.|++|.++.++...
T Consensus         8 ~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~---~~~~~~~~~D~~~~g~i~~~ef~~   60 (66)
T 3li6_A            8 EIDVNGDGAVSYEEVKAF-VSKKRAIKNEQ---LLQLIFKSIDADGNGEIDQNEFAK   60 (66)
T ss_dssp             HHCTTCSSSCCHHHHHHH-HHHHHHHHHHH---HHHHHHHHHCTTCSSSCCHHHHHH
T ss_pred             HHCCCCCCcccHHHHHHH-HHHccCCCcHH---HHHHHHHHHCCCCCCCCCHHHHHH
Confidence            445678888887765433 33322 22333   344557778999999999998764

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=84.07  E-value=0.96  Score=35.64  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             ccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          285 DLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       285 ~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +.++++.|+..|++......... .......+...|+..|.|++|.|+.+++.
T Consensus        56 D~~~~g~i~~~eF~~~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~I~~~el~  107 (156)
T 1wdc_C           56 HKMGEKSLPFEEFLPAYEGLMDC-EQGTFADYMEAFKTFDREGQGFISGAELR  107 (156)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTS-CCCCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             CCCCCCeeeHHHHHHHHHHHhhc-cCChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            34556666666665554433321 11112334455666677777777776664

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=84.06  E-value=1.5  Score=36.71  Aligned_cols=54  Identities=13%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             ccCCCcceehHHHHHHHHHHcCCCCH-------------HHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          285 DLDHDKLVSVAEFVIYKLKEMGKINE-------------EDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       285 ~l~~~~~v~~~e~v~~~L~~~~~i~~-------------e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +.++++.|+..|++............             ...+.+...|+..|.|++|.|+++++..
T Consensus        71 d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~  137 (208)
T 2ct9_A           71 FSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQ  137 (208)
T ss_dssp             SCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             cCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHH
Confidence            45678889988887755433221111             1556778889999999999999999864

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=83.77  E-value=1.7  Score=32.37  Aligned_cols=51  Identities=24%  Similarity=0.431  Sum_probs=37.3

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .-|.+++|.|+..|. ...|...+ ..++++++.+.+   +.|.|++|.++-++..
T Consensus        44 ~~D~d~~G~I~~~El-~~~l~~lg~~~~~~ei~~l~~---~~D~d~dG~I~~~EF~   95 (100)
T 2lv7_A           44 VFDRDGNGFISKQEL-GTAMRSLGYMPNEVELEVIIQ---RLDMDGDGQVDFEEFV   95 (100)
T ss_dssp             HTCSSCSSCBCHHHH-HHHHHHHTCCCCTTTHHHHHH---HHCSSCSSSBCHHHHH
T ss_pred             HHcCCCCCcCCHHHH-HHHHHHhCCCCCHHHHHHHHH---HHCCCCCCeEeHHHHH
Confidence            446688899988664 44555555 467888777654   5688999999998865

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=83.57  E-value=3.6  Score=29.82  Aligned_cols=52  Identities=23%  Similarity=0.461  Sum_probs=36.9

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|+. ..+...+ ..++++++.+   |++.|.|++|.++.++...
T Consensus        37 ~~D~d~~G~I~~~El~-~~l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF~~   89 (94)
T 2kz2_A           37 VEDKDGNGYISAAELR-HVMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFVQ   89 (94)
T ss_dssp             HHCTTCCSCBCHHHHH-HHHHHHTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHHH
T ss_pred             HHCCCCcCcCCHHHHH-HHHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            3456788888877754 3445544 5678877775   4556889999999998754

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=83.44  E-value=1.4  Score=34.03  Aligned_cols=48  Identities=25%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             ccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          285 DLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       285 ~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      |.+++|.|+..|+.. .+...+ ..+++++..+   ++. |.|++|.++.++..
T Consensus        95 D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~~---~~~-d~~~dg~i~~~eF~  143 (149)
T 2mys_C           95 DKEGNGTVMGAELRH-VLATLGEKMTEEEVEEL---MKG-QEDSNGCINYEAFV  143 (149)
T ss_pred             CCCCCceEcHHHHHH-HHHHhCCCCCHHHHHHH---Hhh-CCCCCCcEeHHHHH
Confidence            344555555544333 233332 3445544443   333 55666666655543

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=83.34  E-value=1.2  Score=35.11  Aligned_cols=50  Identities=24%  Similarity=0.442  Sum_probs=29.8

Q ss_pred             hccCCCcceehHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          284 ADLDHDKLVSVAEFVIYKLKEM-GKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       284 ~~l~~~~~v~~~e~v~~~L~~~-~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      -|.+++|.|+..|.. ..|... ...++++++.+.+   ..|.|++|.++-++..
T Consensus        92 ~D~d~~G~I~~~El~-~~l~~~g~~~~~~e~~~l~~---~~D~d~dG~I~~~EF~  142 (148)
T 2lmt_A           92 FDRDGDGFISPAELR-FVMINLGEKVTDEEIDEMIR---EADFDGDGMINYEEFV  142 (148)
T ss_dssp             HHSSCSSEECHHHHH-HHHHHHTCCCCHHHHHHHHH---HHCCSCCSSEEHHHHH
T ss_pred             HCCCCcCcCcHHHHH-HHHHHcCccccHHHHHHHHH---HhCCCCCCeEeHHHHH
Confidence            355677777766643 333333 3456666666544   4467777777777654

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=83.31  E-value=2.5  Score=35.24  Aligned_cols=55  Identities=22%  Similarity=0.358  Sum_probs=41.5

Q ss_pred             hhccCCCcceehHHHHHHHHHH--cCCCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKE--MGKINEEDISVLMER-FRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~--~~~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|+.. .+..  ...++++++..+.++ |+..|.|++|.++.++...
T Consensus       121 ~~D~d~dG~Is~~El~~-~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~  178 (208)
T 2ct9_A          121 LYDLDKDDKISRDELLQ-VLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK  178 (208)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHH
T ss_pred             HHCCCCCCEEcHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            45678899999877544 4444  345788988887444 8889999999999998754

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=83.29  E-value=1  Score=33.40  Aligned_cols=47  Identities=15%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          288 HDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       288 ~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      +++.++..|++...  .   ..++....+.+.|+..|.|++|.|+.+|+...
T Consensus        21 ~~g~i~~~ef~~~~--~---~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~   67 (110)
T 1pva_A           21 AEGSFNHKKFFALV--G---LKAMSANDVKKVFKAIDADASGFIEEEELKFV   67 (110)
T ss_dssp             STTCCCHHHHHHHH--T---CTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTG
T ss_pred             CCCcCcHHHHHHHH--c---cCcchHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence            66778887776653  2   22344566777899999999999999998643

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=83.23  E-value=1.7  Score=33.97  Aligned_cols=50  Identities=20%  Similarity=0.429  Sum_probs=26.1

Q ss_pred             hccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          284 ADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       284 ~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      -|.+++|.|+..|.. ..+...+ .++++++..+.+   +.|.|++|.++.++..
T Consensus        88 ~D~d~~G~I~~~el~-~~l~~~g~~~~~~~~~~~~~---~~D~d~dG~I~~~eF~  138 (143)
T 2obh_A           88 FDDDETGKISFKNLK-RVAKELGENLTDEELQEMID---EADRDGDGEVSEQEFL  138 (143)
T ss_dssp             HCTTCSSSBCHHHHH-HHHHHTTCCCCHHHHHHHHH---HHCTTSSSSBCHHHHH
T ss_pred             hCCCCCCcCcHHHHH-HHHHHhCCCCCHHHHHHHHH---HhCCCCCCcEeHHHHH
Confidence            345556666654432 2333333 355665555433   3466666666666654

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=83.14  E-value=0.66  Score=36.36  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             ccCCCcceehHHHHHHHHHHcC--CCCHHHHHHHHHHHhhcCCCCCcceehhhH
Q 038674          285 DLDHDKLVSVAEFVIYKLKEMG--KINEEDISVLMERFRTLDADQSGNLTTADI  336 (343)
Q Consensus       285 ~l~~~~~v~~~e~v~~~L~~~~--~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~  336 (343)
                      |.+++|.|+..|+ ...+...+  .+++++++.+.+   ..|.|++|.++.++.
T Consensus        50 D~d~~G~I~~~el-~~~l~~~g~~~~~~~e~~~~~~---~~D~d~dG~I~~~EF   99 (135)
T 3h4s_E           50 ADPERHLITAESL-RRNSGILGIEGMSKEDAQGMVR---EGDLDGDGALNQTEF   99 (135)
T ss_dssp             SBTTTTBBCHHHH-HHHGGGGTCCCCCHHHHHHHHH---HHCSSCSSSBCHHHH
T ss_pred             CCCCCCcCCHHHH-HHHHHHhCCCCCCHHHHHHHHH---HhCCCCCCCCcHHHH
Confidence            3344555554432 22333333  345554444333   234455555555544

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=83.11  E-value=2.1  Score=32.93  Aligned_cols=18  Identities=33%  Similarity=0.684  Sum_probs=8.8

Q ss_pred             HHhhcCCCCCcceehhhH
Q 038674          319 RFRTLDADQSGNLTTADI  336 (343)
Q Consensus       319 ~f~~ld~~~~g~l~~~d~  336 (343)
                      .|+..|.|++|.|+.+++
T Consensus        84 ~F~~~D~d~~G~i~~~el  101 (142)
T 2bl0_C           84 AFRTFDPEGTGYIPKAAL  101 (142)
T ss_dssp             HHHHTCCSSCSCEEHHHH
T ss_pred             HHHHHCCCCCCcCcHHHH
Confidence            444445555555555444

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=83.02  E-value=0.83  Score=33.04  Aligned_cols=30  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .+++++..+.+.|+..|.|++|.|+.+|+.
T Consensus        21 l~~~~~~~l~~~F~~~D~d~~G~I~~~El~   50 (91)
T 2pmy_A           21 GDGEELARLRSVFAACDANRSGRLEREEFR   50 (91)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSSSEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHH
Confidence            345566666666777777777777766664

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=83.01  E-value=0.86  Score=33.76  Aligned_cols=46  Identities=15%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             CCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          288 HDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       288 ~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++.++..|++...-  .   .++....+.+.|+..|.|++|.|+.+|+..
T Consensus        20 ~~g~i~~~eF~~~~~--~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (109)
T 1rwy_A           20 AADSFDHKKFFQMVG--L---KKKSADDVKKVFHILDKDKSGFIEEDELGS   65 (109)
T ss_dssp             STTCCCHHHHHHHHT--G---GGSCHHHHHHHHHHHSTTCSSEECHHHHHT
T ss_pred             CCCcEeHHHHHHHHh--c---CcchHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            667788888776541  1   123345667778888999999999998864

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=82.96  E-value=0.9  Score=32.57  Aligned_cols=16  Identities=19%  Similarity=0.428  Sum_probs=8.3

Q ss_pred             hhcCCCCCcceehhhH
Q 038674          321 RTLDADQSGNLTTADI  336 (343)
Q Consensus       321 ~~ld~~~~g~l~~~d~  336 (343)
                      ...|.|++|.++.++.
T Consensus        52 ~~~d~~~dg~i~~~eF   67 (92)
T 2kn2_A           52 KEADLDGDGQVNYEEF   67 (92)
T ss_dssp             HHHCSSCCSSEEHHHH
T ss_pred             HHhCCCCCCcEeHHHH
Confidence            3345555555555554

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=82.90  E-value=2.5  Score=35.02  Aligned_cols=55  Identities=25%  Similarity=0.390  Sum_probs=41.4

Q ss_pred             hhccCCCcceehHHHHHHHHHHc--CCCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEM--GKINEEDISVLMER-FRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~--~~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|+.. .+...  ..++++++..+.++ |.+.|.|++|.++.++...
T Consensus       122 ~~D~d~dG~Is~~El~~-~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~  179 (202)
T 2bec_A          122 LYDLDRDGKISRHEMLQ-VLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK  179 (202)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            45678889998877554 44444  35789988887654 7778999999999998764

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=82.85  E-value=1.7  Score=35.08  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=38.6

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcCC------CCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMGK------INEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~~------i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      ...|.++++.|+..|++...-.....      ..+..-..+...|+..|.|++|.|+.+++...
T Consensus        67 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~  130 (185)
T 2sas_A           67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNY  130 (185)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHH
T ss_pred             HhcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHH
Confidence            34567788899988876655332211      11222345666788899999999999988643

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=82.62  E-value=2.6  Score=32.79  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=41.1

Q ss_pred             hhccCCCcceehHHHHHHHHH-HcCCCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLK-EMGKINEEDISVLMER-FRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~-~~~~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|+....-. .....+++++..+.+. |...|.|++|.++.++...
T Consensus        83 ~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~  140 (155)
T 3ll8_B           83 IYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCA  140 (155)
T ss_dssp             HHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            346678888988776544433 2456788888887665 6778999999999998754

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=82.41  E-value=1.6  Score=30.48  Aligned_cols=55  Identities=11%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC---CCCHHHHHHH-HHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG---KINEEDISVL-MERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~---~i~~e~i~~~-~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|... .+...+   ..+++++..+ ..-|...|.|++|.++.++...
T Consensus        15 ~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~   73 (83)
T 1yx7_A           15 KLDANGDGYVTALELQT-FMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLN   73 (83)
T ss_dssp             HHSSSCSSSCSHHHHHH-HHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence            34567888888766443 444444   4566666653 2247888999999999998763

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=82.38  E-value=2  Score=33.49  Aligned_cols=54  Identities=22%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..+.++++.++..|++...........  ....+...|+..|.|++|.|+.+++..
T Consensus        46 ~~D~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~i~~~e~~~   99 (155)
T 3ll8_B           46 IFDTDGNGEVDFKEFIEGVSQFSVKGD--KEQKLRFAFRIYDMDKDGYISNGELFQ   99 (155)
T ss_dssp             HHCTTCSSSBCHHHHHHHHGGGCSSCC--HHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHHHHHHcccCC--HHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            345677888998888776544333322  234566779999999999999999864

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=82.25  E-value=1  Score=43.07  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=30.7

Q ss_pred             cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          305 MGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       305 ~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..++++|+|.++.+.|+..|.|++|.|+.+|+..
T Consensus       293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~  326 (440)
T 3u0k_A          293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGT  326 (440)
T ss_dssp             CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHH
Confidence            3458999999999999999999999999999864

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=82.21  E-value=3.9  Score=29.26  Aligned_cols=51  Identities=25%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|+. ..+...+ .++++++.+   |...|.|++|.++.++...
T Consensus        35 ~~D~d~~G~I~~~El~-~~l~~~g-~~~~~~~~~---~~~~D~d~dg~I~~~EF~~   85 (91)
T 2pmy_A           35 ACDANRSGRLEREEFR-ALCTELR-VRPADAEAV---FQRLDADRDGAITFQEFAR   85 (91)
T ss_dssp             HHCTTCSSSEEHHHHH-HHHHHTT-CCHHHHHHH---HHHHCTTCSSEECHHHHTH
T ss_pred             HHCCCCCCCCcHHHHH-HHHHHcC-cCHHHHHHH---HHHhCCCCCCCEeHHHHHH
Confidence            4566788889876654 4556666 677766654   5566899999999998764

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=81.74  E-value=4.6  Score=27.55  Aligned_cols=52  Identities=17%  Similarity=0.388  Sum_probs=36.6

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|.. ..+...+..+++++..+   +...|.|++|.++.++...
T Consensus        11 ~~D~~~~G~i~~~el~-~~l~~~g~~~~~~~~~~---~~~~D~~~dg~i~~~ef~~   62 (78)
T 1k9u_A           11 RFDTNGDGKISLSELT-DALRTLGSTSADEVQRM---MAEIDTDGDGFIDFNEFIS   62 (78)
T ss_dssp             HHCTTCSSEECHHHHH-HHHHHHHTCCHHHHHHH---HHHHCTTCSSSEEHHHHHH
T ss_pred             HHCCCCCCcCcHHHHH-HHHHHhCCCCHHHHHHH---HHHhCCCCCCeEcHHHHHH
Confidence            3456788888876654 34444447778877665   5566889999999998753

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=81.57  E-value=3.3  Score=32.92  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCH---H--HHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINE---E--DISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~---e--~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..+.++++.|+..|++...-........   +  .-..+...|+..|.|++|.++.+++..
T Consensus        66 ~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  126 (176)
T 1nya_A           66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA  126 (176)
T ss_dssp             HHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            3456788889988887766554444332   1  124466779999999999999998864

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=81.56  E-value=2.9  Score=33.57  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=40.3

Q ss_pred             hh-ccCCCcceehHHHHHHHHHHc----CCCCHHHHHHHHHH--------HhhcCCCCCcceehhhHhh
Q 038674          283 AA-DLDHDKLVSVAEFVIYKLKEM----GKINEEDISVLMER--------FRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~-~l~~~~~v~~~e~v~~~L~~~----~~i~~e~i~~~~~~--------f~~ld~~~~g~l~~~d~~~  338 (343)
                      .- |.+++|.|+..|+....-.-.    ...+.+++..+...        |...|.|++|.++.+++..
T Consensus        16 ~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~   84 (185)
T 2sas_A           16 FFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLA   84 (185)
T ss_dssp             HHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHHH
Confidence            45 668899999877644332222    35677888777543        8999999999999999753

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=81.54  E-value=1.6  Score=32.85  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=36.3

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      ..+.++++.++..|+......-........-.++...|+..|.|++|.++.+++...
T Consensus        44 ~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~  100 (134)
T 1jfj_A           44 SIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSF  100 (134)
T ss_dssp             HHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHH
T ss_pred             HHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHHHH
Confidence            345577888888777654311001222333344677788899999999999988653

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=81.52  E-value=0.96  Score=33.47  Aligned_cols=46  Identities=22%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             CCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          288 HDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       288 ~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++.++..|++...  ...   ++....+.+.|+..|.|++|.++.+++..
T Consensus        20 ~~g~i~~~eF~~~~--~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 1rro_A           20 DPDTFEPQKFFQTS--GLS---KMSASQVKDIFRFIDNDQSGYLDGDELKY   65 (108)
T ss_dssp             STTCCCHHHHHHHH--SGG---GSCHHHHHHHHHHHCTTCSSEECTHHHHT
T ss_pred             CCCCcCHHHHHHHH--hcC---cccHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            66778888887654  111   23345566788899999999999999864

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=81.46  E-value=3.8  Score=27.82  Aligned_cols=52  Identities=15%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCC-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGK-INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.++..|+. ..+...+. .+++++..+   |...|.|++|.++.++...
T Consensus        15 ~~D~d~~G~i~~~el~-~~l~~~g~~~~~~~~~~~---~~~~d~~~~g~i~~~eF~~   67 (77)
T 2joj_A           15 LFDTNKTGSIDYHELK-VAMRALGFDVKKPEILEL---MNEYDREGNGYIGFDDFLD   67 (77)
T ss_dssp             HHCCSSSSEEEHHHHH-HHHHHHTCCCHHHHHHHH---HHHHCCSSSSEEEHHHHHH
T ss_pred             HhCCCCCCCCcHHHHH-HHHHHhCCCCCHHHHHHH---HHHHCCCCCCcCcHHHHHH
Confidence            4456788889877654 44555553 556666554   5566899999999998754

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=81.35  E-value=2.1  Score=33.43  Aligned_cols=53  Identities=21%  Similarity=0.478  Sum_probs=27.9

Q ss_pred             hhhhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          281 LEAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       281 l~~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +..-|.+++|.++..|+. ..+...+ .+++++++.+.+   +.|.|++|.++.++..
T Consensus        89 F~~~D~d~~G~I~~~el~-~~l~~~g~~~~~~~~~~~~~---~~d~d~dg~i~~~eF~  142 (148)
T 1exr_A           89 FKVFDRDGNGLISAAELR-HVMTNLGEKLTDDEVDEMIR---EADIDGDGHINYEEFV  142 (148)
T ss_dssp             HHHHSTTCSSCBCHHHHH-HHHHHTTCCCCHHHHHHHHH---HHCSSSSSSBCHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHH-HHHHHhCCCCCHHHHHHHHH---HhCCCCCCcEeHHHHH
Confidence            334455566666655543 2333333 355666555443   3366666777666654

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=81.21  E-value=4.3  Score=29.27  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|. ...+.+.+ .+++++.++.+   +.|.|++|.++.++...
T Consensus        17 ~~D~d~dG~I~~~el-~~~l~~~g-~~~~~~~~i~~---~~D~d~dG~i~~~EF~~   67 (92)
T 1fi6_A           17 TIQPDLNGFIPGSAA-KEFFTKSK-LPILELSHIWE---LSDFDKDGALTLDEFCA   67 (92)
T ss_dssp             TTCCSTTCEEEHHHH-HHHHHHHS-SCHHHHHHHHH---HHCTTCSSEEEHHHHHH
T ss_pred             HHCCCCCCcCcHHHH-HHHHHHcC-CCHHHHHHHHH---HHCCCCCCCCCHHHHHH
Confidence            445678888987663 44455554 67777776644   56899999999998754

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=81.16  E-value=1.5  Score=36.44  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC--------------CCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG--------------KINEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~--------------~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      ..+.++++.|+..|++........              .........+...|+..|.|++|.|+.+|+...
T Consensus        69 ~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~  139 (202)
T 2bec_A           69 SFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV  139 (202)
T ss_dssp             TTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence            345677888998888776543322              013344566777899999999999999998643

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=81.02  E-value=3.3  Score=30.17  Aligned_cols=51  Identities=22%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|. ...+.+.+ .+++++.++.+   ..|.|++|.++.++...
T Consensus        18 ~~D~d~dG~I~~~el-~~~l~~~g-~~~~~~~~i~~---~~D~d~dG~i~~~EF~~   68 (95)
T 1c07_A           18 KTDKDMDGFVSGLEV-REIFLKTG-LPSTLLAHIWS---LCDTKDCGKLSKDQFAL   68 (95)
T ss_dssp             HHCTTCSSEECHHHH-HHHHHTTT-CCHHHHHHHHH---HHCTTCSSSEETTTHHH
T ss_pred             HhCCCCCCcEeHHHH-HHHHHHcC-CCHHHHHHHHH---HHCCCCCCcCCHHHHHH
Confidence            445678888987664 44555554 67777766554   56899999999998753

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=80.76  E-value=0.63  Score=35.52  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++++..++.+.|+.+|.|++|.++.+++..
T Consensus        16 ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~   46 (110)
T 1iq3_A           16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKN   46 (110)
T ss_dssp             CSSSSHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            3455566677777778888888887777754

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=80.26  E-value=1.2  Score=32.94  Aligned_cols=46  Identities=15%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             CCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          288 HDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       288 ~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++.|+..|++...-  ..   ++....+.+.|+..|.|++|.++.+|+..
T Consensus        21 ~~g~i~~~eF~~~~~--~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~   66 (109)
T 1bu3_A           21 AADSFNYKAFFAKVG--LT---AKSADDIKKAFFVIDQDKSGFIEEDELKL   66 (109)
T ss_dssp             STTCCCHHHHHHHHT--GG---GSCHHHHHHHHHHHCTTCSSSEEHHHHHT
T ss_pred             CCCcCcHHHHHHHHH--cC---hhhHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            667788888776441  11   23345667788888999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	2e-14
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	1e-09
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	4e-14
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	7e-13
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	4e-11
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	8e-06
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	2e-10
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	2e-06
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	8e-06

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 45  SALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGY 104
           SAL  +         +LLV  L  G+    L      G +      ++++ + T TTVGY
Sbjct: 1   SALHWRA---AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY 57

Query: 105 GDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
           GDL P +   + +A V + +G+   GL+    A + V ++Q
Sbjct: 58  GDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 181 LVTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGG 233
              AT +L+++++AG     + E        + +  AL+    T TT+GYGD+   T  G
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67

Query: 234 RFFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
           R  AV  +++G          L   +    Q 
Sbjct: 68  RCVAVVVMVAGITSFGLVTAALATWFVGREQE 99

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
           +LLL++  +  G   F  I  +           S+Y+  VT+ TVGYGD  P + L    
Sbjct: 5   ILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPSTPLGMYF 57

Query: 118 ACVYVFSGMALVGLILGKAADYL 140
               +  G+    + + +  ++L
Sbjct: 58  TVTLIVLGIGTFAVAVERLLEFL 80

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query: 186 FILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGT 245
            ++L +II G      +E   +  +LY    TI T+GYGD S ST  G +F V  I+ G 
Sbjct: 7   LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGI 66

Query: 246 ICLAQFFLYLTEL 258
              A     L E 
Sbjct: 67  GTFAVAVERLLEF 79

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 52  EIRFRQVLLLLVGYLGVGALCFFLIR----HQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
           ++ +      L     V    F L+       I  +   G + + +F + T+ TVGYGD+
Sbjct: 22  KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 81

Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
            P +  A  +A + +F GM+ + L  G
Sbjct: 82  HPQTVYAHAIATLEIFVGMSGIALSTG 108

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 181 LVTATFILLVLIIAGIVF-----LSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
            + A F++   + A +       ++      FV A +    T+ T+GYGDM   T     
Sbjct: 31  SLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHA 90

Query: 236 FAVFWILSGTICLA 249
            A   I  G   +A
Sbjct: 91  IATLEIFVGMSGIA 104

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 19/77 (24%), Positives = 33/77 (42%)

Query: 58  VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
           +  L +    + AL +      I+  +     D+ +F + TM T+GYG L+P   LA  L
Sbjct: 31  ITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 90

Query: 118 ACVYVFSGMALVGLILG 134
             +    GM  + +   
Sbjct: 91  VTLEALCGMLGLAVAAS 107

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 181 LVTATFILLVLIIAGIVF-----LSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
           L+T  +++   + A         +       F DA +    T+ T+GYG +         
Sbjct: 30  LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANT 89

Query: 236 FAVFWILSGTICLAQFFLYLTELYTQ 261
                 L G + LA     +   +T+
Sbjct: 90  LVTLEALCGMLGLAVAASLIYARFTR 115

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 40.6 bits (95), Expect = 8e-06
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 53  IRFRQV---LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGY 104
           + +R      +LLV  L  G+    L      G +      ++++   T TTVGY
Sbjct: 3   LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.76
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.7
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.59
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.57
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.55
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.51
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.43
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.4
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.75
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.3
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.27
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	93.49
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	91.85
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	91.28
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	91.09
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	90.99
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	88.77
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	88.25
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	87.58
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	87.29
d2p7tc1	34	Potassium channel protein {Streptomyces lividans [	85.55
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	85.23
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	85.18
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	84.31
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	84.0
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	83.94
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	83.34
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	82.46
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	82.43
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	81.89
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	81.59
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	81.44
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	81.42
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	80.94
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	80.89
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	80.75
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	80.66
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	80.48
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	80.24
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	80.04

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.76  E-value=2.3e-18  Score=132.90  Aligned_cols=91  Identities=27%  Similarity=0.414  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG  134 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~  134 (343)
                      +...++++++.+++++..+++.|+..+++...++.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++
T Consensus         8 ~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~   87 (103)
T d1r3jc_           8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666777888888888877777788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 038674          135 KAADYLVEKQQ  145 (343)
Q Consensus       135 ~~~~~~~~~~~  145 (343)
                      .+.+.+.++++
T Consensus        88 ~i~~~~~~~~~   98 (103)
T d1r3jc_          88 ALATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998876544

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.70  E-value=4.3e-18  Score=131.40  Aligned_cols=83  Identities=28%  Similarity=0.422  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 038674          182 VTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY  254 (343)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~  254 (343)
                      ..++.++++.+++++.+++..|+       .++.||+||+++|+|||||||++|.|+.||++++++++.|+.+++..++.
T Consensus         9 ~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~   88 (103)
T d1r3jc_           9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAA   88 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556677777777765       47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 038674          255 LTELYTQSRQ  264 (343)
Q Consensus       255 ~~~~~~~~~~  264 (343)
                      +++.+.++++
T Consensus        89 i~~~~~~~~~   98 (103)
T d1r3jc_          89 LATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998886544

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.59  E-value=1.6e-18  Score=127.51  Aligned_cols=70  Identities=36%  Similarity=0.435  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 038674          188 LLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTE  257 (343)
Q Consensus       188 ~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~  257 (343)
                      ++.++++|+.+++..|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.+++
T Consensus         9 ~~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           9 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678999999999999999999999999999999999999999999999999999999999988765

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.57  E-value=2.8e-15  Score=117.90  Aligned_cols=72  Identities=29%  Similarity=0.497  Sum_probs=61.3

Q ss_pred             HHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           69 GALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYL  140 (343)
Q Consensus        69 g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~  140 (343)
                      .+..|+..++...+...++|.+|+||+++|+|||||||++|.++.||+++++.+++|+.++++.++.+.+.+
T Consensus        43 fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          43 FALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             HHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555566678999999999999999999999999999999999999999999999998887654

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.55  E-value=5.3e-15  Score=116.24  Aligned_cols=76  Identities=24%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           65 YLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYL  140 (343)
Q Consensus        65 ~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~  140 (343)
                      ..+..++.|+..++...+.+.++|.+|+||+++|+||+||||++|.++.||++++++++.|+.++++.++.+...+
T Consensus        38 ~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~f  113 (116)
T d1xl4a2          38 TNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  113 (116)
T ss_dssp             HHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344555666666656666778999999999999999999999999999999999999999999999998877654

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.51  E-value=6.3e-17  Score=118.80  Aligned_cols=71  Identities=24%  Similarity=0.474  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038674           61 LLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAAD  138 (343)
Q Consensus        61 ~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~  138 (343)
                      .++.++++|+..++..|+       |++.||+||+++|+||+||||++|.|+.||++++++++.|++++++.++.+++
T Consensus         8 ~~~~~~~~g~~~~~~~e~-------~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           8 LVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhC-------CCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778887777765       89999999999999999999999999999999999999999999999988765

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.43  E-value=2e-14  Score=112.88  Aligned_cols=55  Identities=27%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELY  259 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~  259 (343)
                      ++|.||+||+++|+|||||||++|.++.||+++++.++.|+.+++..++.+.+.+
T Consensus        60 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999988877543

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.40  E-value=4.4e-14  Score=110.86  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELY  259 (343)
Q Consensus       205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~  259 (343)
                      ++|.||+||+++|+|||||||++|.++.||++++++++.|+.+++..++.+.+.+
T Consensus        59 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~f  113 (116)
T d1xl4a2          59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  113 (116)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999998777644

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.75  E-value=7.1e-09  Score=69.12  Aligned_cols=50  Identities=26%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhccccc
Q 038674           55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGY  104 (343)
Q Consensus        55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGy  104 (343)
                      +....+++++.+++++.+.++.|++.+++++.++.+|+||+++|+|||||
T Consensus         8 ~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            33344445555566677777778877888899999999999999999998

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.30  E-value=3.7e-08  Score=65.54  Aligned_cols=42  Identities=33%  Similarity=0.656  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-------cCccceeeEEEeEeeeccc
Q 038674          182 VTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGY  223 (343)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~~~~e~-------~~~~da~y~~~~t~tTvGy  223 (343)
                      ..+.+++++.+++++.+++..|+       .++.||+||+++|+|||||
T Consensus         9 ~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            33444444444455555555563       5789999999999999998

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=94.27  E-value=0.021  Score=38.80  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=29.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      ++++++.++.+.|+..|.|++|.|+.+|+...
T Consensus         2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~   33 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTV   33 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHH
Confidence            68899999999999999999999999998754

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.49  E-value=0.034  Score=38.00  Aligned_cols=32  Identities=25%  Similarity=0.569  Sum_probs=29.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          307 KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       307 ~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .++++++.++.+.|...|.|++|.|+++|+..
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~   34 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELAT   34 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHHH
Confidence            46889999999999999999999999999864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=91.85  E-value=0.067  Score=36.92  Aligned_cols=30  Identities=17%  Similarity=0.370  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          309 NEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       309 ~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++++..+.+.|+..|.|++|.|+.+++..
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~   30 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELGD   30 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            578888999999999999999999998854

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.28  E-value=0.072  Score=36.74  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          307 KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       307 ~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..+++++..+.+.|+..|.|++|.|+.+|+..
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~   38 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGT   38 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHH
Confidence            36889999999999999999999999999864

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.09  E-value=0.3  Score=31.91  Aligned_cols=53  Identities=26%  Similarity=0.389  Sum_probs=38.8

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.|+..|+.. .+...+ ..+++++..+   |...|.|++|.++.++...
T Consensus         8 ~~~D~d~~G~I~~~El~~-~l~~lg~~~~~~~i~~~---~~~~D~d~dg~I~~~EF~~   61 (67)
T d1tiza_           8 EKFDKNKDGKLSLDEFRE-VALAFSPYFTQEDIVKF---FEEIDVDGNGELNADEFTS   61 (67)
T ss_dssp             HHHCTTSSSCEEHHHHHH-HHHHTCTTSCHHHHHHH---HHHHCCSSSSEECHHHHHH
T ss_pred             HHHCCCCcCcCcHHHHHH-HHHHhccccchHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            345678899999877654 455555 4678877765   5555899999999998764

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=90.99  E-value=0.073  Score=30.23  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=20.8

Q ss_pred             HHHHHHhhcCCCCCcceehhhHhh
Q 038674          315 VLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       315 ~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ++.+.|+..|.|++|.++.+++..
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~~   27 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELRH   27 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            566689999999999999999864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=88.77  E-value=0.52  Score=32.01  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=40.6

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.|+..|.. ..|...+..+++++..+   +++.|.|++|.++.++...
T Consensus        13 ~~~D~d~~G~I~~~El~-~~l~~lg~~~~~ei~~~---~~~~D~d~~G~I~~~EF~~   65 (81)
T d2opoa1          13 KRFDTNGDGKISSSELG-DALKTLGSVTPDEVRRM---MAEIDTDGDGFISFDEFTD   65 (81)
T ss_dssp             HHHCTTCSSEEEHHHHH-HHHHTTTTCCHHHHHHH---HHHHCTTCSSEECHHHHHH
T ss_pred             HHHCCCCCCCCcHHHHH-HHHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            34577899999987754 45677777888877665   5666999999999998764

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.25  E-value=0.23  Score=34.93  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++++...+.+-|+.+|.|++|.++.+++..
T Consensus         3 ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~   33 (92)
T d1fi6a_           3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKE   33 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcccchhHHHHHH
Confidence            5667777777777777777777777766643

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.58  E-value=0.47  Score=35.65  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             hhccccchhhhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          273 TRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       273 ~r~~~~~~l~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +...+..++....-++++.++-.+++..........+.+  +.+.+.|+..|.|++|.++.+++..
T Consensus        37 g~~~~~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~--~~l~~aF~~~D~d~~G~I~~~el~~  100 (142)
T d1wdcb_          37 GRAPDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSE--ETIRNAFAMFDEQETKKLNIEYIKD  100 (142)
T ss_dssp             SSCCCHHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCCCH--HHHHHHHHTTCTTCCSCEEHHHHHH
T ss_pred             hcCCCHHHHHHHHHhccCccccccccccccccccccchh--hhHHHhhhhhcccCCCcccHHHHHH
Confidence            334444444444445567788888877666555544322  2456679999999999999999864

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.29  E-value=0.15  Score=38.64  Aligned_cols=66  Identities=14%  Similarity=0.220  Sum_probs=36.8

Q ss_pred             hhccccchhhhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          273 TRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       273 ~r~~~~~~l~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +...+..++...+.++++.++-.+++...-.....-.+.....+.+.|+..|.+++|.++.+++..
T Consensus        35 g~~~t~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~  100 (140)
T d1ggwa_          35 GQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRY  100 (140)
T ss_dssp             SCCCCHHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHH
T ss_pred             HhhhHHHhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHHHH
Confidence            344444455555555666676666654332222222222334455678888888888888877653

>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces lividans [TaxId: 1916]

Probab=85.55  E-value=1.5  Score=23.54  Aligned_cols=32  Identities=22%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674          113 LAKLLACVYVFSGMALVGLILGKAADYLVEKQ  144 (343)
Q Consensus       113 ~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  144 (343)
                      +||..+++.+..|+.-+++..+.+..++..+.
T Consensus         2 wgrcvavvvmvagits~glv~aa~atwfvgre   33 (34)
T d2p7tc1           2 WGRCVAVVVMVAGITSFGLVTAALATWFVGRE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccchhhhHHHHHHHHhhccc
Confidence            58999999999999999999999998887543

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=85.23  E-value=0.44  Score=34.92  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      ..+.++++.|+..|+....-..........-..+...|+..|.+++|.++++++...
T Consensus        44 ~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~  100 (134)
T d1jfja_          44 SIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSF  100 (134)
T ss_dssp             HHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHH
T ss_pred             HhhhcccccccccccccccccccccccccccccccccccccccccCCcccHHHHHHH
Confidence            456677788888777654433333344555566677788888888888888887543

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.18  E-value=1.3  Score=28.10  Aligned_cols=51  Identities=22%  Similarity=0.488  Sum_probs=38.2

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .-|.+++|.|+..|.. ..|...+ ..+++++..+   ++..|.|++|.++-++..
T Consensus         9 ~fD~~~~G~I~~~el~-~~l~~~g~~~~~~ei~~l---~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           9 VFDKESTGKVSVGDLR-YMLTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHCTTCCSCEEHHHHH-HHHHHTTCCCCHHHHHHH---HTTCCCCTTSEECHHHHH
T ss_pred             HHCCCCCCeEeHHHHH-HHHHHcCCCCCHHHHHHH---HHHcCCCCCCcEeHHHhc
Confidence            4566888999887754 4455555 4788887775   567799999999988864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=0.31  Score=34.43  Aligned_cols=53  Identities=19%  Similarity=0.114  Sum_probs=35.1

Q ss_pred             chhhhhccCCCcceehHHHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          279 SDLEAADLDHDKLVSVAEFVIYKLKEMGKIN-EEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       279 ~~l~~~~l~~~~~v~~~e~v~~~L~~~~~i~-~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .-+...|.+++|.|+..|.. ..+.+  .-- +++   +.+-++..|.|++|.|+.++..
T Consensus        14 ~~F~~~D~d~~G~is~~e~~-~~l~~--~~l~~~~---l~~i~~~~D~d~dG~l~~~EF~   67 (95)
T d1c07a_          14 EIFLKTDKDMDGFVSGLEVR-EIFLK--TGLPSTL---LAHIWSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHHHHHCTTCSSEECHHHHH-HHHHT--TTCCHHH---HHHHHHHHCTTCSSSEETTTHH
T ss_pred             HHHHHHCCCCCCCCcHHHHH-HHHHh--cCCCHHH---HHHHHHHhCCCCCCeEcHHHHH
Confidence            45566788889999876643 33432  232 333   3445667799999999999864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=1.2  Score=31.20  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674          308 INEEDISVLMERFRTLDADQSGNLTTADIMLL  339 (343)
Q Consensus       308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~  339 (343)
                      +++++..++.+-|+.+|.|++|.++.+++...
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~   35 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREI   35 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHH
Confidence            46677778888888888888888888887653

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=83.94  E-value=0.46  Score=32.52  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCC-CcceehhhHhh
Q 038674          307 KINEEDISVLMERFRTLDADQ-SGNLTTADIML  338 (343)
Q Consensus       307 ~i~~e~i~~~~~~f~~ld~~~-~g~l~~~d~~~  338 (343)
                      +.+++++..+.+.|+..|.|+ +|.++.+|+..
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~   40 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGK   40 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHH
Confidence            477888888888888888884 68888888764

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=83.34  E-value=1.9  Score=28.54  Aligned_cols=51  Identities=16%  Similarity=0.383  Sum_probs=37.6

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .-|.+++|.|+..|. ...|...+ ..+++++..+.   .+.|.|++|.++-++..
T Consensus        17 ~~D~d~~G~I~~~el-~~~l~~~g~~~~~~e~~~~~---~~~D~d~~G~I~~~EF~   68 (77)
T d1oqpa_          17 LFDDDNSGTITIKDL-RRVAKELGENLTEEELQEMI---AEADRNDDNEIDEDEFI   68 (77)
T ss_dssp             HHCTTCSSSEEHHHH-HHHHHHHTCCCCHHHHHHHH---HHHCCSSSSEECHHHHH
T ss_pred             HHcCCCCCEechHHH-HHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcEeHHHHH
Confidence            456688889988775 45555554 56788777754   46699999999999864

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=82.46  E-value=1.3  Score=29.86  Aligned_cols=52  Identities=25%  Similarity=0.419  Sum_probs=37.8

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|.+++|.|+..|.- ..+...+ ..++++++.+.+   +.|.|++|.++-+|...
T Consensus        23 ~~D~d~~G~I~~~el~-~~l~~~g~~~~~~ev~~~~~---~~D~d~dg~I~~~EF~~   75 (81)
T d1fi5a_          23 MFDKNADGYIDLEELK-IMLQATGETITEDDIEELMK---DGDKNNDGRIDYDEFLE   75 (81)
T ss_dssp             HHCSSCSSEECHHHHH-HHHHTSSSCCCHHHHHHHHH---HHCSSSSSSEEHHHHHH
T ss_pred             HHcCCCCCcccHHHHH-HHHHhcCCCCCHHHHHHHHH---HHCCCCCCcEeHHHHHH
Confidence            4567889999887753 4455555 468888877654   55889999999998753

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=82.43  E-value=1.6  Score=28.61  Aligned_cols=52  Identities=19%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             hhccCCCcceehHHHHHHHHHHcCC-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMGK-INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      .-|-+++|.++..| +...+...+. .+++++..+.+.+   |.|++|.++-+|...
T Consensus        16 ~~D~d~~G~I~~~e-l~~~l~~~g~~~s~~~~~~~~~~~---D~d~~g~I~f~eF~~   68 (73)
T d2pq3a1          16 LFDKDGDGTITTKE-LGTVMRSLGQNPTEAELQDMINEV---DADGNGTIDFPEFLT   68 (73)
T ss_dssp             HTCTTSSSEEEGGG-HHHHHHHTTCCCCHHHHHHHHHHH---CTTCSSEEEHHHHHH
T ss_pred             HHcCCCCceEeHHH-HHHHHHHhCCCCCHHHHHHHHHHh---CCCCCCeEeHHHHHH
Confidence            45667899998877 4555666664 6888877765554   889999999998753

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=1.7  Score=29.18  Aligned_cols=55  Identities=18%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             hhhhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          280 DLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       280 ~l~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      -+...|.++.|.|+..|+..-.-.-...++++++..+   +..+|.|++|.++-+|..
T Consensus        25 ~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l---~~~~d~~~~g~I~y~eFl   79 (83)
T d1wlza1          25 EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL---WNEMPVNAKGRLKYPDFL   79 (83)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH---HTTSCBCTTSCBCHHHHH
T ss_pred             HHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHH---hhccccCCCCcEeHHHHH
Confidence            3456677889999987765543333446889987775   777788999999988865

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.59  E-value=1.6  Score=30.52  Aligned_cols=46  Identities=20%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             CCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          287 DHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       287 ~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      +++|.|+..| +...+.+. .+.++++..+...   .|.|++|.|+.++..
T Consensus        21 ~~~G~i~~~e-l~~~l~~~-gl~~~~L~~Iw~~---~D~~~dG~l~~~EF~   66 (95)
T d2jxca1          21 PVNGFLSGDK-VKPVLLNS-KLPVDILGRVWEL---SDIDHDGMLDRDEFA   66 (95)
T ss_dssp             CBTTEEEHHH-HHHHHTTS-SCCHHHHHHHHHH---HCTTCSSEEEHHHHH
T ss_pred             CCCCceeHHH-HHHHHHHc-CCCHHHHHHHHHH---hcCCCCCeEcHHHHH
Confidence            5678887766 44445544 4788877776555   588999999999974

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=81.44  E-value=1.9  Score=28.54  Aligned_cols=51  Identities=25%  Similarity=0.427  Sum_probs=37.8

Q ss_pred             hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      .-|.+++|.|+..|. ...|...+ ..++++++.+.+   +.|.|++|.++-++..
T Consensus        17 ~fD~~~~G~I~~~el-~~~l~~lg~~~~~~e~~~~~~---~~D~d~dg~I~~~EF~   68 (75)
T d1jc2a_          17 IFDKNADGFIDIEEL-GEILRATGEHVIEEDIEDLMK---DSDKNNDGRIDFDEFL   68 (75)
T ss_dssp             HHCCSTTSSEEHHHH-HHHHHHSSSCCCHHHHHHHHH---HHCSSSCSEECHHHHH
T ss_pred             HHcCCCcCeEcHHHH-HHHHHhcCCCccHHHHHHHHH---HhCCCCCCcEeHHHHH
Confidence            346678899988774 55556666 467888777654   5689999999998875

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.42  E-value=2  Score=29.61  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=36.8

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM  337 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~  337 (343)
                      ..-|.+++|.|+..| +...+.+.+ +.++++..+.+.   .|.|++|.|+.++..
T Consensus        16 ~~~D~d~~G~i~~~e-~~~~l~~~~-l~~~~l~~i~~~---~D~d~dG~l~~~EF~   66 (92)
T d1fi6a_          16 KTIQPDLNGFIPGSA-AKEFFTKSK-LPILELSHIWEL---SDFDKDGALTLDEFC   66 (92)
T ss_dssp             TTTCCSTTCEEEHHH-HHHHHHHHS-SCHHHHHHHHHH---HCTTCSSEEEHHHHH
T ss_pred             HHhCCCcccchhHHH-HHHHHHHcc-CCHHHHHHHHHH---hCCCCCCeecHHHHH
Confidence            345677888887654 455556554 678777776554   589999999999974

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.94  E-value=0.5  Score=30.16  Aligned_cols=24  Identities=17%  Similarity=0.522  Sum_probs=21.1

Q ss_pred             HHHHHHhhcCCCCCcceehhhHhh
Q 038674          315 VLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       315 ~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ++.+.|+..|.+++|.++.+++..
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~~   25 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLRY   25 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHHH
Confidence            567789999999999999999864

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.89  E-value=0.67  Score=34.69  Aligned_cols=46  Identities=26%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             cCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhH
Q 038674          286 LDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADI  336 (343)
Q Consensus       286 l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~  336 (343)
                      .+++|.|+..|+.. .|...+ ..++++++.+.+    .|.|++|.++-++.
T Consensus        92 ~d~~G~I~~~el~~-~l~~~g~~~~~~e~~~l~~----~~~d~dG~I~y~eF  138 (145)
T d2mysc_          92 KEGNGTVMGAELRH-VLATLGEKMTEEEVEELMK----GQEDSNGCINYEAF  138 (145)
T ss_pred             cCCCCEEcHHHHHH-HHHHhCCCCCHHHHHHHHh----hcCCCCCeEEHHHH
Confidence            34444454443322 223322 344454444432    13345555554443

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.75  E-value=2  Score=28.38  Aligned_cols=53  Identities=17%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcCC-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMGK-INEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.|+..|. ...|...+. .+++++..+   +...|.+++|.++-++...
T Consensus        17 ~~~D~d~~G~I~~~el-~~~l~~~g~~~t~~e~~~~---~~~~D~~~~g~I~~~eF~~   70 (77)
T d1f54a_          17 ALFDKDNNGSISSSEL-ATVMRSLGLSPSEAEVNDL---MNEIDVDGNHQIEFSEFLA   70 (77)
T ss_dssp             HHTCTTCSSEEEHHHH-HHHHHHHTCCCCHHHHHHH---HHTTCCSSCCEEEHHHHHH
T ss_pred             HHHcCCCCCeEChHHH-HHHHHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            3456788999988775 445666654 577777665   5566899999999998653

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=80.66  E-value=0.096  Score=36.64  Aligned_cols=16  Identities=25%  Similarity=0.493  Sum_probs=8.7

Q ss_pred             hhcCCCCCcceehhhH
Q 038674          321 RTLDADQSGNLTTADI  336 (343)
Q Consensus       321 ~~ld~~~~g~l~~~d~  336 (343)
                      .+.|.|++|.++-++.
T Consensus        66 ~~~D~d~~g~I~~~EF   81 (87)
T d1s6ja_          66 DAADIDKSGTIDYGEF   81 (87)
T ss_dssp             HHHCTTCSSEECHHHH
T ss_pred             HHcCCCCCCeEeHHHH
Confidence            3445566666665554

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=80.48  E-value=1.7  Score=32.17  Aligned_cols=54  Identities=20%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.++..|+....-......++++++.+   |+..|.|++|.++.+|...
T Consensus        89 ~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~i---~~~~D~d~dG~i~~~eF~~  142 (146)
T d1exra_          89 KVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEM---IREADIDGDGHINYEEFVR  142 (146)
T ss_dssp             HHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHH---HHHHCSSSSSSBCHHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHHHHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHHH
Confidence            34567888999988765444334446788888876   4455889999999998753

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=80.24  E-value=1.5  Score=34.03  Aligned_cols=53  Identities=26%  Similarity=0.408  Sum_probs=35.9

Q ss_pred             hhhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          282 EAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       282 ~~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      ..-|.+++|.++..|+... +...+ ..++++++.+   |+..|.|++|.|+.+|...
T Consensus       114 ~~~D~d~~G~is~~E~~~~-l~~~g~~~~~~~~~~l---f~~~D~d~dG~Is~~EF~~  167 (189)
T d1qv0a_         114 DIFDKDGSGTITLDEWKAY-GKISGISPSQEDCEAT---FRHCDLDNAGDLDVDEMTR  167 (189)
T ss_dssp             HHTC----CEECHHHHHHH-HHHHSSCCCHHHHHHH---HHHSCCCTTSCEEHHHHHH
T ss_pred             HHHccCCCCcccchhhHHH-HHhcCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            3456788999998775554 45554 4788876664   6677999999999999853

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=80.04  E-value=2  Score=29.30  Aligned_cols=32  Identities=34%  Similarity=0.586  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674          307 KINEEDISVLMERFRTLDADQSGNLTTADIML  338 (343)
Q Consensus       307 ~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~  338 (343)
                      +++++++..+.+.|+..|.|++|.|+.+++..
T Consensus        16 ~l~~~~i~~l~~~F~~~D~d~~G~I~~~el~~   47 (87)
T d1s6ja_          16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKD   47 (87)
T ss_dssp             SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCCCCCcCcHHHHHH
Confidence            45566666677778888888888888887754