Citrus Sinensis ID: 038679

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQEIVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN
Secondary Structure (PSIPRED)
cccccHHHHcccccEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccEEEEEccEEEEEEcccccHHccccccccccccccccccccccccHcccccccccccHHHccccccccccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
MKVRSSVKKLCQFCKIVKRRGHIFVIcsanpkhkqrqgmstfpneglltstfietnvkqeivpnhnfqvglaslmpekdetsssiiydggpvlhllfnqen
Flexible Loop (DISEMBL)
mkvrssvkKLCQFckivkrrghIFVICsanpkhkqrqgmSTFPNEGLLTSTFIETNVKQEIVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN
Low Complexity Region (SEG)
MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQEIVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN
Disordered region (IsUnstruct)
*******KKLCQFCKIVKRRGHIFVICSA***************EGLLTSTFIETNVKQEIVPNHNFQVGLASL*********SIIYDGGPVLHLLF****
Disordered Region (DISOPRED)
***RSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPN************************************TSSSIIYDGGPVLHLLFNQ**
Disordered Region (DISEMBL)
********KLCQFCKIVKRRGHIFVICSAN********MSTFPNEGLLTSTFIETNVKQEIVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN
Disordered Region (DISPRO)
***RSSVKKLCQFCKIVKRRGHIFVICSANP*************************************VGLASL*PEKDETSSSIIYDGGPVLHLLFNQE*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQEIVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
P73300	38	50S ribosomal protein L36	N/A	no	0.376	1.0	0.710	1e-10
B2G8V5	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.789	1e-10
A5VLI2	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.789	1e-10
B3WAJ5	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.710	2e-10
Q035A6	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.710	2e-10
Q74L67	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.736	4e-10
Q03PY0	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.710	4e-10
B4F1K5	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.736	5e-10
A4WFA7	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.815	5e-10
Q03ED9	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.710	6e-10

>sp|P73300|RL36_SYNY3 50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpmJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKK+C  C++++RRG + VICSANPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B2G8V5|RL36_LACRJ 50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVKK+C+ CKIVKR G + VICSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

Lactobacillus reuteri (strain JCM 1112) (taxid: 557433)

>sp|A5VLI2|RL36_LACRD 50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVKK+C+ CKIVKR G + VICSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

Lactobacillus reuteri (strain DSM 20016) (taxid: 557436)

>sp|B3WAJ5|RL36_LACCB 50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVKK+C+ CK+V+R+G + +ICSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

Lactobacillus casei (strain BL23) (taxid: 543734)

>sp|Q035A6|RL36_LACC3 50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVKK+C+ CK+V+R+G + +ICSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

Lactobacillus casei (strain ATCC 334) (taxid: 321967)

>sp|Q74L67|RL36_LACJO 50S ribosomal protein L36 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpmJ PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVK +C+ CKI+KR+G + VICSANPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKIIKRQGRVMVICSANPKHKQRQG 38

Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) (taxid: 257314)

>sp|Q03PY0|RL36_LACBA 50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpmJ PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVK +C+ CK++KR+G + VICSANPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38

Lactobacillus brevis (strain ATCC 367 / JCM 1170) (taxid: 387344)

>sp|B4F1K5|RL36_PROMH 50S ribosomal protein L36 OS=Proteus mirabilis (strain HI4320) GN=rpmJ PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKK+C+ CKIV+R GH+ VICS +PKHKQRQG
Sbjct: 1  MKVRASVKKMCRNCKIVRRHGHVRVICSVDPKHKQRQG 38

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A4WFA7|RL361_ENT38 50S ribosomal protein L36 1 OS=Enterobacter sp. (strain 638) GN=rpmJ1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKKLC+ CKIVKR G I VICSA PKHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKREGVIRVICSAEPKHKQRQG 38

Enterobacter sp. (strain 638) (taxid: 399742)

>sp|Q03ED9|RL36_PEDPA 50S ribosomal protein L36 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpmJ PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR SVK +C+ CKI++R+G + VICSANPKHKQRQG
Sbjct: 1  MKVRPSVKTMCEHCKIIRRKGRVMVICSANPKHKQRQG 38

Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) (taxid: 278197)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
147794982	100	hypothetical protein VITISV_039227 [Viti	0.990	1.0	0.564	8e-25
225445521	100	PREDICTED: uncharacterized protein LOC10	0.990	1.0	0.564	2e-24
449465743	100	PREDICTED: uncharacterized protein LOC10	0.990	1.0	0.514	2e-23
449465741	117	PREDICTED: uncharacterized protein LOC10	0.950	0.820	0.541	3e-23
118481183	97	unknown [Populus trichocarpa]	0.960	1.0	0.544	4e-23
224144216	132	predicted protein [Populus trichocarpa]	0.960	0.734	0.544	5e-23
224090431	97	predicted protein [Populus trichocarpa]	0.792	0.824	0.590	1e-20
116778532	78	unknown [Picea sitchensis]	0.742	0.961	0.586	3e-19
15241288	103	Ribosomal protein L36 [Arabidopsis thali	0.990	0.970	0.5	3e-19
388501868	99	unknown [Lotus japonicus]	0.841	0.858	0.579	7e-19

>gi|147794982|emb|CAN71764.1| hypothetical protein VITISV_039227 [Vitis vinifera]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C++C+ VKRRG ++V+C+ANPKHKQRQGMSTF +EG L     E N KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           I  NH  Q GLAS++P+K E S    +    +  LLF Q N
Sbjct: 61  ISXNHRLQGGLASIIPKKPEPSMMYGWRAS-LASLLFKQXN 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445521|ref|XP_002285234.1| PREDICTED: uncharacterized protein LOC100250810 isoform 2 [Vitis vinifera] gi|297738962|emb|CBI28207.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C++C+ VKRRG ++V+C+ANPKHKQRQGMSTF +EG L     E N KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           I  NH  Q GLAS++P+K E S    +    +  LLF Q N
Sbjct: 61  ISRNHRLQGGLASIIPKKPEPSMMYGWRAS-LASLLFKQVN 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465743|ref|XP_004150587.1| PREDICTED: uncharacterized protein LOC101223220 isoform 2 [Cucumis sativus] gi|449465745|ref|XP_004150588.1| PREDICTED: uncharacterized protein LOC101223220 isoform 3 [Cucumis sativus] gi|449465747|ref|XP_004150589.1| PREDICTED: uncharacterized protein LOC101223220 isoform 4 [Cucumis sativus] gi|449523620|ref|XP_004168821.1| PREDICTED: uncharacterized LOC101223220 isoform 2 [Cucumis sativus] gi|449523622|ref|XP_004168822.1| PREDICTED: uncharacterized LOC101223220 isoform 3 [Cucumis sativus] gi|449523624|ref|XP_004168823.1| PREDICTED: uncharacterized LOC101223220 isoform 4 [Cucumis sativus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C+FC+ VKR+G +++ CS+NPKHKQRQG+STF +EG   S F  T VKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 60

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           I+P+ + + GLASL+P+K+E +  + +  G +  +L  + N
Sbjct: 61  ILPSQSLRTGLASLIPQKNEPTMFLGWRMG-LASILLKKHN 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465741|ref|XP_004150586.1| PREDICTED: uncharacterized protein LOC101223220 isoform 1 [Cucumis sativus] gi|449523618|ref|XP_004168820.1| PREDICTED: uncharacterized LOC101223220 isoform 1 [Cucumis sativus]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 72/96 (75%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C+FC+ VKR+G +++ CS+NPKHKQRQG+STF +EG   S F  T VKQE
Sbjct: 18  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 77

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLL 96
           I+P+ + + GLASL+P+K+E +  + +  G    LL
Sbjct: 78  ILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILL 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481183|gb|ABK92543.1| unknown [Populus trichocarpa]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C+FC+IVKRRG I+VICS+NPKHKQRQG +TF   GL+++   ET     
Sbjct: 1   MKVRSSVKKMCEFCQIVKRRGRIYVICSSNPKHKQRQGFATFAYSGLISA---ETTAPPR 57

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           IVP+ +  +GLASL+P+K E S+   +  G +   LF Q N
Sbjct: 58  IVPSQSMGIGLASLLPKKYEPSTMYGWRAG-LSSFLFKQGN 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144216|ref|XP_002325223.1| predicted protein [Populus trichocarpa] gi|222866657|gb|EEF03788.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
           MKVRSSVKK+C+FC+IVKRRG I+VICS+NPKHKQRQG +TF   GL+++   ET     
Sbjct: 36  MKVRSSVKKMCEFCQIVKRRGRIYVICSSNPKHKQRQGFATFAYSGLISA---ETTAPPR 92

Query: 61  IVPNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           IVP+ +  +GLASL+P+K E S+   +  G +   LF Q N
Sbjct: 93  IVPSQSMGIGLASLLPKKYEPSTMYGWRAG-LSSFLFKQGN 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090431|ref|XP_002308985.1| predicted protein [Populus trichocarpa] gi|222854961|gb|EEE92508.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 66/83 (79%), Gaps = 3/83 (3%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
          MKVRSSVKK+C+FC+IVKRRG I+VIC++NPKHKQRQG ST    GL+++   ET+  Q 
Sbjct: 1  MKVRSSVKKMCEFCQIVKRRGRIYVICNSNPKHKQRQGFSTLAYGGLISA---ETSAPQG 57

Query: 61 IVPNHNFQVGLASLMPEKDETSS 83
          I+P+ +  VGLA+L+P+K E S+
Sbjct: 58 IIPSQSTGVGLATLIPKKHEPSA 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778532|gb|ABK20897.1| unknown [Picea sitchensis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 61/75 (81%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIETNVKQE 60
          MKVRSSVKKLC+FC+ VKRRG ++++C++NPKHKQRQG+STF  +G L+ T +E+N K+E
Sbjct: 1  MKVRSSVKKLCEFCRSVKRRGKVYILCTSNPKHKQRQGISTFAYQGPLSPTSLESNCKKE 60

Query: 61 IVPNHNFQVGLASLM 75
          I    +  VGLAS++
Sbjct: 61 ISGAESGGVGLASIL 75

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241288|ref|NP_197518.1| Ribosomal protein L36 [Arabidopsis thaliana] gi|30687686|ref|NP_850857.1| Ribosomal protein L36 [Arabidopsis thaliana] gi|17065488|gb|AAL32898.1| Unknown protein [Arabidopsis thaliana] gi|20148663|gb|AAM10222.1| unknown protein [Arabidopsis thaliana] gi|21555484|gb|AAM63869.1| ribosomal protein L36-like [Arabidopsis thaliana] gi|222424094|dbj|BAH20007.1| AT5G20180 [Arabidopsis thaliana] gi|332005426|gb|AED92809.1| Ribosomal protein L36 [Arabidopsis thaliana] gi|332005427|gb|AED92810.1| Ribosomal protein L36 [Arabidopsis thaliana]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 4/104 (3%)

Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTST-FIETNVKQ 59
           MKVRSSVKK+C+FCK VKRRG ++VICS+NPKHKQRQG S+F  EG+  S  F E    Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 60  EIV--PNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           E+V  P      GLASL+ ++   ++   +  G +  +LF Q N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSG-LASILFKQGN 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501868|gb|AFK39000.1| unknown [Lotus japonicus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTSTFIE-TNVKQ 59
          MKVRSSVKK+C+FCK VKRRG ++VICSANPKHKQRQGMSTF NEG      +E ++ KQ
Sbjct: 1  MKVRSSVKKMCEFCKTVKRRGRVYVICSANPKHKQRQGMSTFANEGPSNPVSLEISSAKQ 60

Query: 60 EIVPNHNFQVGLASLMPEKDETSSSIIY 87
          EI      + G AS+ P++   S S++Y
Sbjct: 61 EIRLPLTLRPGPASIFPQRH--SLSMLY 86

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2149299	103	AT5G20180 [Arabidopsis thalian	0.990	0.970	0.5	1.7e-20
UNIPROTKB|P0A7Q6	38	rpmJ "50S ribosomal subunit pr	0.376	1.0	0.815	3.5e-11
ASPGD|ASPL0000017226	109	AN10477 [Emericella nidulans (	0.376	0.348	0.657	2e-10
UNIPROTKB|P0C458	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	1.1e-09
UNIPROTKB|P0C459	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	1.1e-09
UNIPROTKB|P62727	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	1.1e-09
UNIPROTKB|Q6ENE0	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	1.1e-09
UNIPROTKB|P0A497	37	rpmJ "50S ribosomal protein L3	0.366	1.0	0.684	1.8e-09
TIGR_CMR|VC_2575	37	VC_2575 "ribosomal protein L36	0.366	1.0	0.684	1.8e-09
TIGR_CMR|BA_0134	37	BA_0134 "ribosomal protein L36	0.366	1.0	0.631	2.2e-09

TAIR|locus:2149299 AT5G20180 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 52/104 (50%), Positives = 68/104 (65%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQGMSTFPNEGLLTST-FIETNVKQ 59
             MKVRSSVKK+C+FCK VKRRG ++VICS+NPKHKQRQG S+F  EG+  S  F E    Q
Sbjct:     1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query:    60 EIV--PNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
             E+V  P      GLASL+ ++   ++   +  G +  +LF Q N
Sbjct:    61 ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSG-LASILFKQGN 103

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

UNIPROTKB|P0A7Q6 rpmJ "50S ribosomal subunit protein L36" [Escherichia coli K-12 (taxid:83333)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MKVR+SVKKLC+ CKIVKR G I VICSA PKHKQRQG
Sbjct:     1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

ASPGD|ASPL0000017226 AN10477 [Emericella nidulans (taxid:162425)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MK RSSVK+LC+ CK V+R+  +++ICS NPKHKQRQG
Sbjct:    71 MKTRSSVKRLCEGCKPVRRKNRVYIICSKNPKHKQRQG 108

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P0C458 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MK+R+SV+K+C  C++++RRG I VICS NPKHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C459 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MK+R+SV+K+C  C++++RRG I VICS NPKHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P62727 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MK+R+SV+K+C  C++++RRG I VICS NPKHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6ENE0 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MK+R+SV+K+C  C++++RRG I VICS NPKHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0A497 rpmJ "50S ribosomal protein L36" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MKVR+SVKK+C+ CK++KR G + VICS  PKHKQRQG
Sbjct:     1 MKVRASVKKICRNCKVIKRNGVVRVICS-EPKHKQRQG 37

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2575 VC_2575 "ribosomal protein L36" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MKVR+SVKK+C+ CK++KR G + VICS  PKHKQRQG
Sbjct:     1 MKVRASVKKICRNCKVIKRNGVVRVICS-EPKHKQRQG 37

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0134 BA_0134 "ribosomal protein L36" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query:     1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
             MKVR SVK +C+ CK+++RRG + VIC  NPKHKQ+QG
Sbjct:     1 MKVRPSVKPICEKCKVIRRRGKVMVICE-NPKHKQKQG 37

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q035A6	RL36_LACC3	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q8ZJ91	RL361_YERPE	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q6CZZ1	RL361_ERWCT	No assigned EC number	0.7894	0.3762	1.0	yes	no
B2K516	RL362_YERPB	No assigned EC number	0.7894	0.3762	1.0	yes	no
B1IQ00	RL361_ECOLC	No assigned EC number	0.8157	0.3762	1.0	yes	no
P0A7R0	RL36_SHIFL	No assigned EC number	0.8157	0.3762	1.0	yes	no
A5VLI2	RL36_LACRD	No assigned EC number	0.7894	0.3762	0.9743	yes	no
A7ZSI8	RL361_ECO24	No assigned EC number	0.8157	0.3762	1.0	yes	no
B1LHB3	RL361_ECOSM	No assigned EC number	0.8157	0.3762	1.0	yes	no
A9BFZ4	RL36_PETMO	No assigned EC number	0.7368	0.3762	1.0	yes	no
B4F1K5	RL36_PROMH	No assigned EC number	0.7368	0.3762	1.0	yes	no
A1JS06	RL362_YERE8	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q32B52	RL36_SHIDS	No assigned EC number	0.8157	0.3762	1.0	yes	no
B3WAJ5	RL36_LACCB	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q046A3	RL36_LACGA	No assigned EC number	0.7368	0.3762	1.0	yes	no
B2G8V5	RL36_LACRJ	No assigned EC number	0.7894	0.3762	0.9743	yes	no
Q31VX7	RL36_SHIBS	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q57J53	RL361_SALCH	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q0TCG2	RL361_ECOL5	No assigned EC number	0.8157	0.3762	1.0	yes	no
B1JIY2	RL361_YERPY	No assigned EC number	0.7894	0.3762	1.0	yes	no
C4ZUF4	RL36_ECOBW	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q1R632	RL361_ECOUT	No assigned EC number	0.8157	0.3762	1.0	yes	no
P0A7Q8	RL36_SALTY	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q03PY0	RL36_LACBA	No assigned EC number	0.7105	0.3762	0.9743	yes	no
A4WFA7	RL361_ENT38	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q2NQP3	RL362_SODGM	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q664U2	RL361_YERPS	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q03ED9	RL36_PEDPA	No assigned EC number	0.7105	0.3762	0.9743	yes	no
Q5PK05	RL361_SALPA	No assigned EC number	0.8157	0.3762	1.0	yes	no
A8A5A4	RL361_ECOHS	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q0T003	RL36_SHIF8	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q74L67	RL36_LACJO	No assigned EC number	0.7368	0.3762	1.0	yes	no
B1X6F1	RL361_ECODH	No assigned EC number	0.8157	0.3762	1.0	yes	no
A7MPF5	RL361_CROS8	No assigned EC number	0.8157	0.3762	1.0	yes	no
Q3YWW0	RL36_SHISS	No assigned EC number	0.8157	0.3762	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam00444	38	pfam00444, Ribosomal_L36, Ribosomal protein L36	2e-20
COG0257	38	COG0257, RpmJ, Ribosomal protein L36 [Translation,	1e-18
PRK00465	37	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewe	2e-17
TIGR01022	37	TIGR01022, rpmJ_bact, ribosomal protein L36, bacte	3e-14
PRK00831	41	PRK00831, rpmJ, 50S ribosomal protein L36; Validat	2e-12
CHL00029	26	CHL00029, rpl36, ribosomal protein L36	2e-07

>gnl|CDD|201231 pfam00444, Ribosomal_L36, Ribosomal protein L36

 Score = 76.4 bits (189), Expect = 2e-20
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVRSSVKK C+ CKIV+R+G ++VIC  NP+HKQRQG
Sbjct: 1  MKVRSSVKKRCKDCKIVRRKGRVYVICKTNPRHKQRQG 38

Length = 38

>gnl|CDD|223335 COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

 Score = 72.0 bits (177), Expect = 1e-18
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKK C+ CKIV+R+G ++VIC  NPKHKQRQG
Sbjct: 1  MKVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG 38

Length = 38

>gnl|CDD|179039 PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed

 Score = 68.8 bits (169), Expect = 2e-17
 Identities = 26/38 (68%), Positives = 33/38 (86%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKK+C+ CK++KR+G + VIC  NPKHKQRQG
Sbjct: 1  MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37

Length = 37

>gnl|CDD|130094 TIGR01022, rpmJ_bact, ribosomal protein L36, bacterial type

 Score = 61.0 bits (148), Expect = 3e-14
 Identities = 27/38 (71%), Positives = 33/38 (86%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKK+C+ CKI+KR+G + VIC  NPKHKQRQG
Sbjct: 1  MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37

Proteins found by this model occur exclusively in bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 37

>gnl|CDD|179138 PRK00831, rpmJ, 50S ribosomal protein L36; Validated

 Score = 56.2 bits (136), Expect = 2e-12
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 1  MKVRSSVKKLCQF---CKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+S+K L      C++V+R+G ++VI   NP+ K RQG
Sbjct: 1  MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41

Length = 41

>gnl|CDD|176970 CHL00029, rpl36, ribosomal protein L36

 Score = 43.3 bits (103), Expect = 2e-07
 Identities = 15/26 (57%), Positives = 24/26 (92%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVI 26
          MK+R+SV+K+C+ C++++RRG IFVI
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIFVI 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF00444	38	Ribosomal_L36: Ribosomal protein L36; InterPro: IP	99.91
KOG4122	38	consensus Mitochondrial/chloroplast ribosomal prot	99.91
PRK00465	37	rpmJ 50S ribosomal protein L36; Reviewed	99.91
COG0257	38	RpmJ Ribosomal protein L36 [Translation, ribosomal	99.91
TIGR01022	37	rpmJ_bact ribosomal protein L36, bacterial type. P	99.9
PRK00831	41	rpmJ 50S ribosomal protein L36; Validated	99.89
CHL00029	26	rpl36 ribosomal protein L36	99.41

>PF00444 Ribosomal_L36: Ribosomal protein L36; InterPro: IPR000473 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.91  E-value=1.4e-25  Score=135.46  Aligned_cols=38  Identities=63%  Similarity=1.176  Sum_probs=33.9

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|||||||++|||||||||
T Consensus         1 MKVr~slk~~c~~C~~vrR~gr~~Vick~nprhKqrQg   38 (38)
T PF00444_consen    1 MKVRSSLKKRCKDCYVVRRKGRLYVICKKNPRHKQRQG   38 (38)
T ss_dssp             -BESSS-S-SSSTSEEEEETTEEEEEESSSGGGCEEE-
T ss_pred             CcchhhhhhcCCCCceEEECCEEEEECCCCCchhccCC
Confidence            99999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [] can be grouped into: bacterial L36; algal and plant chloroplast L36; Cyanelle L36. L36 is a small basic and cysteine-rich protein of 37 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_6 2HGU_8 2HGJ_8 1DGZ_A 1DFE_A 2HGQ_8 1VSP_b 1VSA_b 3PIP_4 1VOU_6 ....

>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.7e-25  Score=136.01  Aligned_cols=38  Identities=58%  Similarity=1.142  Sum_probs=37.5

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|+|||+|+|+||+||||++|||||||||
T Consensus         1 fKvk~svkk~C~~Cy~VrRrgR~yViC~~~prHKqrqg   38 (38)
T KOG4122|consen    1 FKVKASVKKRCKDCYLVRRRGRVYVICKTHPRHKQRQG   38 (38)
T ss_pred             CchhHHHHHhhhhceEEEEcccEEEEcCCCcchhhhcC
Confidence            89999999999999999999999999999999999997

>PRK00465 rpmJ 50S ribosomal protein L36; Reviewed

Probab=99.91  E-value=4e-25  Score=133.29  Aligned_cols=37  Identities=70%  Similarity=1.231  Sum_probs=36.5

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+||||| +|||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~gr~~Vic-~nprhKqRQg   37 (37)
T PRK00465          1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhcCCCCEEEEECCEEEEEc-CCCCcccccC
Confidence            999999999999999999999999999 7999999998

>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3.8e-25  Score=134.50  Aligned_cols=38  Identities=71%  Similarity=1.241  Sum_probs=37.7

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|+|++|++|++|||+|+|||||++|||||||||
T Consensus         1 MKV~~SvK~~c~~CkivrRkGrv~VIck~~prhKqrQg   38 (38)
T COG0257           1 MKVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG   38 (38)
T ss_pred             CccccccccccCCceEEEecCEEEEEeCCCcchhhhcC
Confidence            99999999999999999999999999999999999998

>TIGR01022 rpmJ_bact ribosomal protein L36, bacterial type

Probab=99.90  E-value=1.7e-24  Score=130.66  Aligned_cols=37  Identities=73%  Similarity=1.240  Sum_probs=36.2

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      ||||+|||++|++|++|||+|+|||||+ |||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~grv~Vick-~prhKqRQG   37 (37)
T TIGR01022         1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhhCcCCeEEEECCEEEEEeC-CCCccccCC
Confidence            9999999999999999999999999997 799999998

Proteins found by this model occur exclusively in bacteria and organelles.

>PRK00831 rpmJ 50S ribosomal protein L36; Validated

Probab=99.89  E-value=7e-24  Score=130.41  Aligned_cols=38  Identities=50%  Similarity=0.919  Sum_probs=36.5

Q ss_pred             Ccccchhhhc---cCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKL---CQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~---C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      ||||+|||++   |++|++|||+|++||||++|||||||||
T Consensus         1 MKVr~SvKk~~~~~~~c~vvrR~grv~Vick~nprhKqRQG   41 (41)
T PRK00831          1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG   41 (41)
T ss_pred             CchhhhhhhhhccCCCCEEEEeCCEEEEEcCCCCcccccCC
Confidence            9999999995   5999999999999999999999999998

>CHL00029 rpl36 ribosomal protein L36

Probab=99.41  E-value=1.1e-13  Score=78.12  Aligned_cols=26  Identities=58%  Similarity=1.260  Sum_probs=25.5

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEE
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVI   26 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyVi   26 (101)
                      ||||+|||++|++|++|||+|++|||
T Consensus         1 MKVr~Svkk~c~~c~ivrR~g~v~Vi   26 (26)
T CHL00029          1 MKIRASVRKICEKCRLIRRRGRIFVI   26 (26)
T ss_pred             CcccccccccCCCCEEEeecCEEEEC
Confidence            99999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
3bbo_6	104	Homology Model For The Spinach Chloroplast 50s Subu		1e-20
1p85_4	38	Real Space Refined Coordinates Of The 50s Subunit F		6e-11
2j03_9	37	Structure Of The Thermus Thermophilus 70s Ribosome		1e-08
1nwx_4	37	Complex Of The Large Ribosomal Subunit From Deinoco		1e-08
1nkw_4	36	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-08
3fin_9	35	T. Thermophilus 70s Ribosome In Complex With Mrna,		3e-07
1pnu_4	35	Crystal Structure Of A Streptomycin Dependent Ribos		3e-07

>pdb|3BBO|6 Chain 6, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 104

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 1   MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQ-GMSTFPNEGLLTST-FIETNVK 58
           MKVRSSVKK+C+FCK VKRRG ++VICS+NPKHKQRQ G S+F  EG+  S  F E    
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIAS 60
Query: 59  QEIV--PNHNFQVGLASLMPEKDETSSSIIYDGGPVLHLLFNQEN 101
           QE+V  P      GLASL+ ++   ++   +  G +  +LF Q N
Sbjct: 61  QELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSG-LASILFKQGN 104

>pdb|1P85|4 Chain 4, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 38

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKKLC+ CKIVKR G I VICSA PKHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>pdb|1NWX|4 Chain 4, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 37

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVRSSVKK+C  CK+V+R G + VICS N KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

>pdb|1NKW|4 Chain 4, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 36

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQ 37
          MKVRSSVKK+C  CK+V+R G + VICS N KHKQRQ
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQ 36

>pdb|3FIN|9 Chain 9, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 35

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Query: 2  KVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQ 37
          KVR+SVK++C  CK+++R G ++VIC  NPKHKQRQ
Sbjct: 1  KVRASVKRICDKCKVIRRHGRVYVICE-NPKHKQRQ 35

>pdb|1PNU|4 Chain 4, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 35

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 2  KVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQ 37
          KVRSSVKK+C  CK+V+R G + VICS N KHKQRQ
Sbjct: 1  KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQ 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	2e-26
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	2e-20
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	2e-18

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 104

 Score = 92.9 bits (230), Expect = 2e-26
 Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG-MSTFPNEGLLTSTFI---ETN 56
          MKVRSSVKK+C+FCK VKRRG ++VICS+NPKHKQRQG  S+F  EG+  S        +
Sbjct: 1  MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIAS 60

Query: 57 VKQEIVPNHNFQVGLASLMPEKDETS 82
           +   +P      GLASL+ ++   +
Sbjct: 61 QELVRLPGQGVSAGLASLLHKRPMPT 86

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ... Length = 38

 Score = 76.0 bits (187), Expect = 2e-20
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKKLC+ CKIVKR G I VICSA PKHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ... Length = 37

 Score = 70.6 bits (173), Expect = 2e-18
 Identities = 27/38 (71%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVRSSVKK+C  CK+V+R G + VICS N KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	100.0
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	99.92
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	99.9

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=3.1e-53  Score=300.33  Aligned_cols=100  Identities=46%  Similarity=0.751  Sum_probs=37.8

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC-CCCCCCCC--CCCc-cccccccccccccccccccccccccc
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG-MSTFPNEG--LLTS-TFIETNVKQEIVPNHNFQVGLASLMP   76 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG-~~t~a~~~--~~~~-~~~e~~~~~~i~~~~~~~~g~as~~~   76 (101)
                      ||||+|||++|++|++|||+||||||||+||||||||| |+|+|+++  |+|+ .+.|++++++|.|+|+.++||||++|
T Consensus         1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG~~~T~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gla~~~~   80 (104)
T 3bbo_6            1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIASQELVRLPGQGVSAGLASLLH   80 (104)
T ss_dssp             CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC------------------------------------------
T ss_pred             CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhccceeeeeccCCCCCCccccccccccccccccccccccceeccc
Confidence            99999999999999999999999999999999999999 99999999  7777 55566669999999999999999999


Q ss_pred             CCCCCceeccccccchhhhhcccCC
Q 038679           77 EKDETSSSIIYDGGPVLHLLFNQEN  101 (101)
Q Consensus        77 ~~~~~s~~~~w~~g~la~~l~~q~n  101 (101)
                      +||||||+||||+| ||||||+|||
T Consensus        81 ~~~~~s~~~~wr~g-las~l~~~~~  104 (104)
T 3bbo_6           81 KRPMPTAYFGWRSG-LASILFKQGN  104 (104)
T ss_dssp             -------------------------
T ss_pred             cCcCcchhhCchhh-HHHHhhccCC
Confidence            99999999999999 9999999998

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...

Probab=99.92  E-value=1.4e-26  Score=139.48  Aligned_cols=38  Identities=82%  Similarity=1.216  Sum_probs=37.7

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+|||||++|||||||||
T Consensus         1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG   38 (38)
T 3r8s_4            1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred             CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence            99999999999999999999999999999999999998

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...

Probab=99.90  E-value=1.8e-25  Score=133.90  Aligned_cols=37  Identities=73%  Similarity=1.220  Sum_probs=36.6

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+|||||+ |||||||||
T Consensus         1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg   37 (37)
T 2zjr_4            1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred             CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence            9999999999999999999999999999 999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d2qam41	38	g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherich	2e-21
d2zjr41	37	g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococc	4e-19

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]} Length = 38

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

 Score = 76.9 bits (190), Expect = 2e-21
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVR+SVKKLC+ CKIVKR G I VICSA PKHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]} Length = 37

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 71.2 bits (175), Expect = 4e-19
 Identities = 27/38 (71%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38
          MKVRSSVKK+C  CK+V+R G + VICS N KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2qam41	38	Ribosomal protein L36 {Escherichia coli [TaxId: 56	99.92
d2zjr41	37	Ribosomal protein L36 {Deinococcus radiodurans [Ta	99.91

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.2e-27  Score=141.82  Aligned_cols=38  Identities=82%  Similarity=1.216  Sum_probs=37.7

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+|||||++|||||||||
T Consensus         1 MKVr~svKk~C~~C~ivrR~Grv~ViCk~nPrHKQRQG   38 (38)
T d2qam41           1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CCCCSCCCCCSTTBCCCCBTTBCCCCBSSCGGGCCCCC
T ss_pred             CccchhhhhhCCCCeEEEecCEEEEEeCCCCcccccCC
Confidence            99999999999999999999999999999999999998

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.91  E-value=5.2e-26  Score=135.30  Aligned_cols=37  Identities=70%  Similarity=1.210  Sum_probs=36.2

Q ss_pred             CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679            1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG   38 (101)
Q Consensus         1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG   38 (101)
                      ||||+|||++|++|++|||+|+||||| +|||||||||
T Consensus         1 MKVr~SvKk~C~~C~virR~g~v~ViC-~npkHKQRQG   37 (37)
T d2zjr41           1 MKVRSSVKKMCDNCKVVRRHGRVLVIC-SNVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECC-SSSTTCEECC
T ss_pred             CccchhhhhhccCceEEEeCCEEEEEe-CCCCccccCC
Confidence            999999999999999999999999999 5999999998