Citrus Sinensis ID: 038706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESGRIHRFDGIKHTWLLNVI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccccccccccccccccccccccEHHHHHcccEccccccEEEEEEcc
Coil and Loop (DISEMBL)
marrhgwqlpahtFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVrctgidpadpgiliepdkisayklqndtdlpgkysdnsqIRVLSAesgrihrfdgikhtwllnvi
Flexible Loop (DISEMBL)
marrhgwqlpahTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTdlpgkysdnSQIRVLSaesgrihrfdgikhtwllnvi
Low Complexity Region (SEG)
MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESGRIHRFDGIKHTWLLNVI
Disordered region (IsUnstruct)
*****GWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQN*************IRVLSAESGRIHRFDGIKHTWLLNV*
Disordered Region (DISOPRED)
MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGI**********************************SGRIHRFDGIKHTWLLNVI
Disordered Region (DISEMBL)
********LPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESGRIHRFDGIKHTWLLNVI
Disordered Region (DISPRO)
*****GWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIE************************IRVLSAESGRIHRFDGIKHTWLLNVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESGRIHRFDGIKHTWLLNVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q6DR03	565	Probable S-acyltransferas	yes	no	0.763	0.171	0.742	4e-38
Q8L5Y5	718	Probable S-acyltransferas	no	no	0.590	0.104	0.733	2e-28
Q9LIE4	706	Probable S-acyltransferas	no	no	0.590	0.106	0.706	1e-26
Q9C533	596	Probable S-acyltransferas	no	no	0.566	0.120	0.527	7e-19
Q9M115	508	Probable S-acyltransferas	no	no	0.543	0.135	0.434	1e-08
Q9H8X9	412	Probable palmitoyltransfe	yes	no	0.574	0.177	0.364	3e-05
P0C7U3	371	Probable palmitoyltransfe	no	no	0.574	0.196	0.337	0.0005
Q14AK4	347	Probable palmitoyltransfe	yes	no	0.614	0.224	0.278	0.0006

>sp|Q6DR03|ZDHC3_ARATH Probable S-acyltransferase At2g33640 OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 81/97 (83%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQLPAHTFQVVAITVFFLL+VAYYAFFAPFLG +LYEY+AIGVYS LAF V +L
Sbjct: 1  MARRHGWQLPAHTFQVVAITVFFLLTVAYYAFFAPFLGNKLYEYIAIGVYSFLAFSVLVL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS 97
          Y+RCTGIDPADPGI ++ D   A+K QN   +P   S
Sbjct: 61 YIRCTGIDPADPGIFVKADNTPAHKSQNSNYVPENAS 97

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q8L5Y5|ZDH17_ARATH Probable S-acyltransferase At4g15080 OS=Arabidopsis thaliana GN=At4g15080 PE=1 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          M R+HGWQLPAH FQVVAITVF LLSVAYYAFFAPF+G  ++EY+ +GVYS +A  VF+L
Sbjct: 1  MVRKHGWQLPAHKFQVVAITVFCLLSVAYYAFFAPFVGGRIWEYILLGVYSPVALIVFVL 60

Query: 61 YVRCTGIDPADPGIL 75
          YVRCT I+PADPGI+
Sbjct: 61 YVRCTAINPADPGIM 75

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LIE4|ZDHC8_ARATH Probable S-acyltransferase At3g22180 OS=Arabidopsis thaliana GN=At3g22180 PE=1 SV=2

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          M R+HGWQLPAHT QV+AITVF LL VA+YAFFAPF+G  ++EYV IGVYS +A  VF+L
Sbjct: 1  MVRKHGWQLPAHTLQVIAITVFCLLVVAFYAFFAPFVGGRIWEYVLIGVYSPVAILVFVL 60

Query: 61 YVRCTGIDPADPGIL 75
          YVRCT I+PADP I+
Sbjct: 61 YVRCTAINPADPRIM 75

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C533|ZDHC1_ARATH Probable S-acyltransferase At1g69420 OS=Arabidopsis thaliana GN=At1g69420 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 52/72 (72%)

Query: 3  RRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYV 62
          R+HGWQLP H  QVVA+ VF  L  A+Y FFAPF+G ++++Y+A+G+Y+ L  CV  LY+
Sbjct: 2  RKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKIHQYIAMGIYTPLITCVVGLYI 61

Query: 63 RCTGIDPADPGI 74
           C   DPAD G+
Sbjct: 62 WCAASDPADRGV 73

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M115|ZDH16_ARATH Probable S-acyltransferase At4g01730 OS=Arabidopsis thaliana GN=At4g01730 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query: 3  RRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYV 62
          RRHGWQ P H  Q+V   ++ +L  A+Y F   FLG  +     + V+S +A  V +L+V
Sbjct: 4  RRHGWQRPLHPLQIVGAVIYSVLVAAFYVFLGFFLGNRIAVIALLSVFSSVAVSVIVLFV 63

Query: 63 RCTGIDPAD 71
          RCT IDP D
Sbjct: 64 RCTAIDPTD 72

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9H8X9|ZDH11_HUMAN Probable palmitoyltransferase ZDHHC11 OS=Homo sapiens GN=ZDHHC11 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           ++R +GW LP H FQVV   VF  LS A +  F PFL    ++Y+A  V   +     ++
Sbjct: 28  ISRVNGWSLPLHYFQVVTWAVFVGLSSATFGIFIPFL-PHAWKYIAYVVTGGIFSFHLVV 86

Query: 61  YVRCTGIDPADPGI 74
           ++  + IDPAD  +
Sbjct: 87  HLIASCIDPADSNV 100

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0C7U3|ZH11B_HUMAN Probable palmitoyltransferase ZDHHC11B OS=Homo sapiens GN=ZDHHC11B PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           ++R +GW LP H F+VV   VF  LS+A +  F P L    ++Y+A  V   +     ++
Sbjct: 28  ISRVNGWSLPLHYFRVVTWAVFVGLSLATFRIFIPLLPHS-WKYIAYVVTGGIFSFHLVV 86

Query: 61  YVRCTGIDPADPGI 74
           ++  + IDPAD  +
Sbjct: 87  HLIASCIDPADSNV 100

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q14AK4|ZDH11_MOUSE Probable palmitoyltransferase ZDHHC11 OS=Mus musculus GN=Zdhhc11 PE=2 SV=2

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           ++R +GW  P H+FQ ++   +  +S+  +  F PFL    ++Y A  V   +     I+
Sbjct: 31  LSRVNGWSPPLHSFQAISWITYLAMSIVTFGIFIPFLPYS-WKYAANIVMGGVFIFHLIV 89

Query: 61  YVRCTGIDPADPGILIEPD 79
           ++    IDPAD  + ++ D
Sbjct: 90  HLIAITIDPADTNVRLKKD 108

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
255539288	654	zinc finger protein, putative [Ricinus c	0.881	0.171	0.709	6e-41
147810598	1102	hypothetical protein VITISV_007364 [Viti	0.866	0.099	0.727	9e-40
225457612	657	PREDICTED: probable S-acyltransferase At	0.763	0.147	0.804	3e-39
297745582	484	unnamed protein product [Vitis vinifera]	0.874	0.229	0.711	6e-39
224065657	622	predicted protein [Populus trichocarpa]	0.740	0.151	0.797	2e-38
30685792	565	putative S-acyltransferase [Arabidopsis	0.763	0.171	0.742	3e-36
297823159	571	zinc finger family protein [Arabidopsis	0.763	0.169	0.742	6e-36
21805681	565	hypothetical protein [Arabidopsis thalia	0.763	0.171	0.731	1e-35
224083346	588	predicted protein [Populus trichocarpa]	0.732	0.158	0.741	7e-35
356517219	653	PREDICTED: probable S-acyltransferase At	0.740	0.143	0.723	3e-33

>gi|255539288|ref|XP_002510709.1| zinc finger protein, putative [Ricinus communis] gi|223551410|gb|EEF52896.1| zinc finger protein, putative [Ricinus communis]

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 96/117 (82%), Gaps = 5/117 (4%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           MARRHGWQLP HTFQ+VAITVFFLLSVAYYAFFAPFLG ++YEYVA+GVYSVLA  VFIL
Sbjct: 1   MARRHGWQLPVHTFQIVAITVFFLLSVAYYAFFAPFLGKDIYEYVAVGVYSVLALAVFIL 60

Query: 61  YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS---DNSQIRVLSAESGRIHR 114
           YVRCT IDPADPGIL+E D+ + +K QN TDLPG  S   + S+IR+   + GR H+
Sbjct: 61  YVRCTAIDPADPGILLEADETAGHKSQNGTDLPGNASFIEEPSKIRL--KDGGRSHK 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810598|emb|CAN71969.1| hypothetical protein VITISV_007364 [Vitis vinifera]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 89/110 (80%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           MARRHGW+LPAHTFQVVAITVFFLLSVA+YAFFAPFLG ++YEYVAI VYS LA  VFIL
Sbjct: 496 MARRHGWELPAHTFQVVAITVFFLLSVAFYAFFAPFLGKDIYEYVAISVYSFLALSVFIL 555

Query: 61  YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESG 110
           YVRCT IDPADPGILIE DK S Y+  NDTDLPG  S   +   +  ++G
Sbjct: 556 YVRCTAIDPADPGILIEGDKTSTYRSHNDTDLPGNASSIEEPSKIGLKNG 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457612|ref|XP_002274079.1| PREDICTED: probable S-acyltransferase At2g33640-like [Vitis vinifera]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 83/97 (85%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGW+LPAHTFQVVAITVFFLLSVA+YAFFAPFLG ++YEYVAI VYS LA  VFIL
Sbjct: 1  MARRHGWELPAHTFQVVAITVFFLLSVAFYAFFAPFLGKDIYEYVAISVYSFLALSVFIL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS 97
          YVRCT IDPADPGILIE DK S Y+  ND DLPG  S
Sbjct: 61 YVRCTAIDPADPGILIEGDKTSTYRSHNDADLPGNAS 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745582|emb|CBI40747.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 88/111 (79%)

Query: 1   MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
           MARRHGW+LPAHTFQVVAITVFFLLSVA+YAFFAPFLG ++YEYVAI VYS LA  VFIL
Sbjct: 1   MARRHGWELPAHTFQVVAITVFFLLSVAFYAFFAPFLGKDIYEYVAISVYSFLALSVFIL 60

Query: 61  YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQIRVLSAESGR 111
           YVRCT IDPADPGILIE DK S Y+  ND DLPG  S   +   +  ++G 
Sbjct: 61  YVRCTAIDPADPGILIEGDKTSTYRSHNDADLPGNASSIEEPSKIGLKNGE 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065657|ref|XP_002301906.1| predicted protein [Populus trichocarpa] gi|222843632|gb|EEE81179.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 84/94 (89%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQLP HTFQ+VAITVFF+LSVA+YAFFAPFLG  +YEYVAIGVYSVLA  VFIL
Sbjct: 1  MARRHGWQLPVHTFQIVAITVFFVLSVAFYAFFAPFLGKVIYEYVAIGVYSVLALSVFIL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPG 94
          YVRCT IDPADPGIL+E D+ + +K +NDTDLPG
Sbjct: 61 YVRCTAIDPADPGILLEADETAGHKSENDTDLPG 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685792|ref|NP_180922.2| putative S-acyltransferase [Arabidopsis thaliana] gi|75254668|sp|Q6DR03.1|ZDHC3_ARATH RecName: Full=Probable S-acyltransferase At2g33640; AltName: Full=Probable palmitoyltransferase At2g33640; AltName: Full=Zinc finger DHHC domain-containing protein At2g33640 gi|50058969|gb|AAT69229.1| hypothetical protein At2g33640 [Arabidopsis thaliana] gi|330253771|gb|AEC08865.1| putative S-acyltransferase [Arabidopsis thaliana]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 81/97 (83%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQLPAHTFQVVAITVFFLL+VAYYAFFAPFLG +LYEY+AIGVYS LAF V +L
Sbjct: 1  MARRHGWQLPAHTFQVVAITVFFLLTVAYYAFFAPFLGNKLYEYIAIGVYSFLAFSVLVL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS 97
          Y+RCTGIDPADPGI ++ D   A+K QN   +P   S
Sbjct: 61 YIRCTGIDPADPGIFVKADNTPAHKSQNSNYVPENAS 97

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823159|ref|XP_002879462.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297325301|gb|EFH55721.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 81/97 (83%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQLPAHTFQVVAITVFFLL+VAYYAFFAPFLG +LYEY+AIGVYS LAF V +L
Sbjct: 1  MARRHGWQLPAHTFQVVAITVFFLLTVAYYAFFAPFLGNKLYEYIAIGVYSFLAFSVLVL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS 97
          Y+RCTGIDPADPGI ++ D   A+K QN   +P   S
Sbjct: 61 YIRCTGIDPADPGIFVKADYTPAHKSQNSNYVPDNAS 97

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21805681|gb|AAM76752.1| hypothetical protein [Arabidopsis thaliana]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 80/97 (82%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQLPAHTFQVVAITVFFLL+V YYAFFAPFLG +LYEY+AIGVYS LAF V +L
Sbjct: 1  MARRHGWQLPAHTFQVVAITVFFLLTVXYYAFFAPFLGNKLYEYIAIGVYSFLAFSVLVL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPGKYS 97
          Y+RCTGIDPADPGI ++ D   A+K QN   +P   S
Sbjct: 61 YIRCTGIDPADPGIFVKADNTPAHKSQNSNYVPENAS 97

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083346|ref|XP_002306990.1| predicted protein [Populus trichocarpa] gi|222856439|gb|EEE93986.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 80/93 (86%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGWQ P HTFQ+VA+TVFFLLSVA+Y+FFAPFLG ++YEYVAIGVYSV A  VFIL
Sbjct: 1  MARRHGWQFPVHTFQIVAVTVFFLLSVAFYSFFAPFLGKDIYEYVAIGVYSVSALSVFIL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLP 93
          YVRCT IDPADPGIL+  D+ + +K +NDT LP
Sbjct: 61 YVRCTAIDPADPGILLGADETAGHKSENDTYLP 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517219|ref|XP_003527286.1| PREDICTED: probable S-acyltransferase At4g15080-like isoform 1 [Glycine max]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 79/94 (84%)

Query: 1  MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
          MARRHGW+LP HTFQVVAITVFFLLS+AYYAFFAPFLG ++YEYVAIGVYSVLA  VF L
Sbjct: 1  MARRHGWELPFHTFQVVAITVFFLLSIAYYAFFAPFLGKDIYEYVAIGVYSVLALSVFFL 60

Query: 61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLPG 94
          YVRCT IDPAD G++++ DK S  + + D +L G
Sbjct: 61 YVRCTAIDPADQGVMVDCDKTSKNRSKLDEELAG 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2051068	565	AT2G33640 [Arabidopsis thalian	0.732	0.164	0.763	4.9e-36
TAIR|locus:2129655	718	AT4G15080 "AT4G15080" [Arabido	0.590	0.104	0.733	2e-26
TAIR|locus:2090404	706	AT3G22180 [Arabidopsis thalian	0.590	0.106	0.706	1e-24
TAIR|locus:2007086	596	AT1G69420 "AT1G69420" [Arabido	0.566	0.120	0.527	4.4e-18
TAIR|locus:2133447	508	AT4G01730 "AT4G01730" [Arabido	0.543	0.135	0.434	1.6e-14
UNIPROTKB|J9P930	427	J9P930 "Uncharacterized protei	0.598	0.177	0.389	1.3e-09
UNIPROTKB|F1P9E9	311	F1P9E9 "Uncharacterized protei	0.598	0.244	0.378	1.1e-08
UNIPROTKB|F1M6X9	326	Zdhhc11 "Protein Zdhhc11" [Rat	0.614	0.239	0.321	1.2e-06
UNIPROTKB|Q9H8X9	412	ZDHHC11 "Probable palmitoyltra	0.574	0.177	0.364	2.2e-06
MGI|MGI:1918414	347	Zdhhc11 "zinc finger, DHHC dom	0.606	0.221	0.3	1.2e-05

TAIR|locus:2051068 AT2G33640 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 71/93 (76%), Positives = 80/93 (86%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
             MARRHGWQLPAHTFQVVAITVFFLL+VAYYAFFAPFLG +LYEY+AIGVYS LAF V +L
Sbjct:     1 MARRHGWQLPAHTFQVVAITVFFLLTVAYYAFFAPFLGNKLYEYIAIGVYSFLAFSVLVL 60

Query:    61 YVRCTGIDPADPGILIEPDKISAYKLQNDTDLP 93
             Y+RCTGIDPADPGI ++ D   A+K QN   +P
Sbjct:    61 YIRCTGIDPADPGIFVKADNTPAHKSQNSNYVP 93

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2129655 AT4G15080 "AT4G15080" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
             M R+HGWQLPAH FQVVAITVF LLSVAYYAFFAPF+G  ++EY+ +GVYS +A  VF+L
Sbjct:     1 MVRKHGWQLPAHKFQVVAITVFCLLSVAYYAFFAPFVGGRIWEYILLGVYSPVALIVFVL 60

Query:    61 YVRCTGIDPADPGIL 75
             YVRCT I+PADPGI+
Sbjct:    61 YVRCTAINPADPGIM 75

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090404 AT3G22180 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 53/75 (70%), Positives = 63/75 (84%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
             M R+HGWQLPAHT QV+AITVF LL VA+YAFFAPF+G  ++EYV IGVYS +A  VF+L
Sbjct:     1 MVRKHGWQLPAHTLQVIAITVFCLLVVAFYAFFAPFVGGRIWEYVLIGVYSPVAILVFVL 60

Query:    61 YVRCTGIDPADPGIL 75
             YVRCT I+PADP I+
Sbjct:    61 YVRCTAINPADPRIM 75

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2007086 AT1G69420 "AT1G69420" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 38/72 (52%), Positives = 52/72 (72%)

Query:     3 RRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYV 62
             R+HGWQLP H  QVVA+ VF  L  A+Y FFAPF+G ++++Y+A+G+Y+ L  CV  LY+
Sbjct:     2 RKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKIHQYIAMGIYTPLITCVVGLYI 61

Query:    63 RCTGIDPADPGI 74
              C   DPAD G+
Sbjct:    62 WCAASDPADRGV 73

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2133447 AT4G01730 "AT4G01730" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 30/69 (43%), Positives = 41/69 (59%)

Query:     3 RRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYV 62
             RRHGWQ P H  Q+V   ++ +L  A+Y F   FLG  +     + V+S +A  V +L+V
Sbjct:     4 RRHGWQRPLHPLQIVGAVIYSVLVAAFYVFLGFFLGNRIAVIALLSVFSSVAVSVIVLFV 63

Query:    63 RCTGIDPAD 71
             RCT IDP D
Sbjct:    64 RCTAIDPTD 72

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|J9P930 J9P930 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
             ++R +GW  P H+FQVVA   F +L+VA +  F PFL    ++YVA GV   L F  F++
Sbjct:    25 LSRVNGWSRPLHSFQVVAWATFLILAVANFGIFIPFLPHN-WKYVAYGVTGGLFFLHFLV 83

Query:    61 YVRCTGIDPADPGILIE 77
             ++    IDPA+  + ++
Sbjct:    84 HLITVSIDPAEANVRLK 100

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P9E9 F1P9E9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGV-YSV----LAF 55
             ++R +GW  P H+FQVVA   F +L+VA +  F PFL    ++YVA GV ++V    L F
Sbjct:    44 LSRVNGWSRPLHSFQVVAWATFLILAVANFGIFIPFLPHN-WKYVAYGVSFTVVTGGLFF 102

Query:    56 CVFILYVRCTGIDPADPGILIE 77
               F++++    IDPA+  + ++
Sbjct:   103 LHFLVHLITVSIDPAEANVRLK 124

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M6X9 Zdhhc11 "Protein Zdhhc11" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/84 (32%), Positives = 46/84 (54%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFC-VF- 58
             ++R +GW  P H+FQ ++ T +  +S+  +  F PFL T  ++Y A  V  VL    VF 
Sbjct:    28 LSRVNGWSPPLHSFQAISWTTYLAMSIVTFGIFIPFLPTS-WKYAANAVSFVLVMGGVFM 86

Query:    59 ---ILYVRCTGIDPADPGILIEPD 79
                ++++    IDPAD  + ++ D
Sbjct:    87 FHLVVHLIAITIDPADTNVRLKKD 110

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9H8X9 ZDHHC11 "Probable palmitoyltransferase ZDHHC11" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFIL 60
             ++R +GW LP H FQVV   VF  LS A +  F PFL    ++Y+A  V   +     ++
Sbjct:    28 ISRVNGWSLPLHYFQVVTWAVFVGLSSATFGIFIPFL-PHAWKYIAYVVTGGIFSFHLVV 86

Query:    61 YVRCTGIDPADPGI 74
             ++  + IDPAD  +
Sbjct:    87 HLIASCIDPADSNV 100

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

MGI|MGI:1918414 Zdhhc11 "zinc finger, DHHC domain containing 11" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query:     1 MARRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVA-IGVYSVLAFCVFI 59
             ++R +GW  P H+FQ ++   +  +S+  +  F PFL    ++Y A I +  V  F + +
Sbjct:    31 LSRVNGWSPPLHSFQAISWITYLAMSIVTFGIFIPFLPYS-WKYAANIVMGGVFIFHLIV 89

Query:    60 LYVRCTGIDPADPGILIEPD 79
               +  T IDPAD  + ++ D
Sbjct:    90 HLIAIT-IDPADTNVRLKKD 108

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DR03	ZDHC3_ARATH	2, ., 3, ., 1, ., -	0.7422	0.7637	0.1716	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002912001 SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (597 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	99.75
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	99.33
KOG1312	341	consensus DHHC-type Zn-finger proteins [General fu	99.25
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	99.17
KOG1315	307	consensus Predicted DHHC-type Zn-finger protein [G	99.05
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.75
KOG1313	309	consensus DHHC-type Zn-finger proteins [General fu	98.12
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	97.99

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.75  E-value=4.1e-19  Score=142.70  Aligned_cols=124  Identities=24%  Similarity=0.317  Sum_probs=80.0

Q ss_pred             CcccCCCCCCChhHHHHHHHHHHHHHHH--HhhhhcccChhhHHHHHHHHHHHHHHHHHhhheeeeeecC-CCCCCccCC
Q 038706            2 ARRHGWQLPAHTFQVVAITVFFLLSVAY--YAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDP-ADPGILIEP   78 (127)
Q Consensus         2 ~R~nGw~~Plh~~Qv~~W~~~~~l~~~~--f~~~iP~l~~~~~~~~~~~v~~~l~~~~~~~~~~~t~iDP-aD~~v~~~~   78 (127)
                      .|+.||.....+..+..++.+++.....  +++..+.++. .+....+.+.++++....++....+...+ +||++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~if~~~~~~~~~~~~~~~~sdpg~~p~~   87 (299)
T KOG1311|consen    9 IPRRGGRILDPPVALPVLVTYVLLVGSETFFVFLPPLLPR-GGVSPAVLVLGAIFFLLNILNLMLACFRMLSDPGIVPRA   87 (299)
T ss_pred             ccCCCceeeccccchhHHHHHHHHhhheEEEEEEeeecCC-cccchHHHHHHHHHHHHHHHHHHHHHhcccCCCceecCc
Confidence            4677888888888888888877777666  5555566664 12222233333333332222222222222 666655432


Q ss_pred             -Cc---------cccccccCCCCCCCCccccccccccCCCCcc------cCCCCCCCceeccCCC
Q 038706           79 -DK---------ISAYKLQNDTDLPGKYSDNSQIRVLSAESGR------IHRFDGIKHTWLLNVI  127 (127)
Q Consensus        79 -~~---------~~~drsk~~hvi~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~WlnNci  127 (127)
                       +.         ...+..+++++++..||+.|+..+-+|||||      |.|||| ||+|+||||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDH-HC~WvnnCV  151 (299)
T KOG1311|consen   88 DDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDH-HCPWLNNCI  151 (299)
T ss_pred             ccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCC-CCCCccceE
Confidence             11         1233445777888899999999999999997      899999 899999998

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.33  E-value=3.7e-13  Score=99.28  Aligned_cols=68  Identities=24%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             hhheeeeeecCCCCCCccC-C------C----ccccccccCCCCCCCCccccccccccCCCCcc------cCCCCCCCce
Q 038706           59 ILYVRCTGIDPADPGILIE-P------D----KISAYKLQNDTDLPGKYSDNSQIRVLSAESGR------IHRFDGIKHT  121 (127)
Q Consensus        59 ~~~~~~t~iDPaD~~v~~~-~------~----~~~~drsk~~hvi~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~  121 (127)
                      ++++++..+||........ .      .    ....+....+...+..+|..|++.--.|||||      |.+||| ||-
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DH-HC~   80 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDH-HCP   80 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccc-cch
Confidence            4577888999988776610 0      0    00122223344455678999999989999998      799999 899


Q ss_pred             eccCCC
Q 038706          122 WLLNVI  127 (127)
Q Consensus       122 WlnNci  127 (127)
                      |+||||
T Consensus        81 w~~~cI   86 (174)
T PF01529_consen   81 WLGNCI   86 (174)
T ss_pred             hhcccc
Confidence            999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.25  E-value=7e-12  Score=101.56  Aligned_cols=94  Identities=19%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             HHHhhhhcccChhhHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCCccCCCccccccccCCCCC--CCCcccccccccc
Q 038706           28 AYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTDL--PGKYSDNSQIRVL  105 (127)
Q Consensus        28 ~~f~~~iP~l~~~~~~~~~~~v~~~l~~~~~~~~~~~t~iDPaD~~v~~~~~~~~~drsk~~hvi--~n~~C~lC~i~V~  105 (127)
                      ..+.+..|.++.+....  +.++.. +++-.++...+...||+..+-..+....  .+-.-|.+|  +|..|.-|+++=-
T Consensus        85 ~esfiy~~~l~lsl~~~--il~~l~-vivp~i~f~ltc~snpg~i~k~n~s~~~--~~ypYDy~if~k~~kCSTCki~KP  159 (341)
T KOG1312|consen   85 WESFIYCQELELSLHYL--ILPYLL-VIVPLIFFTLTCGSNPGIITKANESLFL--HVYPYDYVIFPKNVKCSTCKIRKP  159 (341)
T ss_pred             heeeEeccchhhhHHHH--HHHHHH-HHHHHHHHhhhhcCCCCccchhhhccce--eccCccceeecCCCccccccCCCc
Confidence            44556667665532222  222222 2222333444556777766533222111  111233333  4668999999888


Q ss_pred             CCCCcc------cCCCCCCCceeccCCC
Q 038706          106 SAESGR------IHRFDGIKHTWLLNVI  127 (127)
Q Consensus       106 ~~tKHC------v~~FDh~hc~WlnNci  127 (127)
                      +|||||      |.|||| ||.|.||||
T Consensus       160 ARSKHCsiCNrCV~rfDH-HCiWiNNCI  186 (341)
T KOG1312|consen  160 ARSKHCSICNRCVHRFDH-HCIWINNCI  186 (341)
T ss_pred             cccccchHHHHHHHHhcc-ceEeeeccc
Confidence            999998      799999 899999998

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=99.17  E-value=3.5e-11  Score=98.30  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             HHHhhheeeeeecCCCCC--CccCCC----ccccccccCCCCCCCCccccccccccCCCCcc------cCCCCCCCceec
Q 038706           56 CVFILYVRCTGIDPADPG--ILIEPD----KISAYKLQNDTDLPGKYSDNSQIRVLSAESGR------IHRFDGIKHTWL  123 (127)
Q Consensus        56 ~~~~~~~~~t~iDPaD~~--v~~~~~----~~~~drsk~~hvi~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~Wl  123 (127)
                      ....+++.....||.-+.  .-..+.    ++..+   .++..+..+|.-|+..--+|||||      |.+||| ||-|+
T Consensus        68 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DH-HC~Wi  143 (309)
T COG5273          68 LASFSYLLLLVSDPGYLGENITLSGYRETISRLLD---DGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDH-HCPWI  143 (309)
T ss_pred             hHHHhhHHHhhcCCCccCccccccchhhhhhhhhh---cCccccceeccccccccCCCCccchhhcchhhccCc-cCccc
Confidence            455677777777887664  111111    11222   233444569999999999999998      799999 89999


Q ss_pred             cCCC
Q 038706          124 LNVI  127 (127)
Q Consensus       124 nNci  127 (127)
                      ||||
T Consensus       144 ~nCV  147 (309)
T COG5273         144 NNCV  147 (309)
T ss_pred             cccc
Confidence            9998

>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]

Probab=99.05  E-value=5.9e-11  Score=97.02  Aligned_cols=116  Identities=16%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHHHHhhheeeeeecCCCCCCccCCCccccccc
Q 038706            7 WQLPAHTFQVVAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCVFILYVRCTGIDPADPGILIEPDKISAYKL   86 (127)
Q Consensus         7 w~~Plh~~Qv~~W~~~~~l~~~~f~~~iP~l~~~~~~~~~~~v~~~l~~~~~~~~~~~t~iDPaD~~v~~~~~~~~~drs   86 (127)
                      |..|+...++++|.++++.+.    +.++.+..+.+..+...+++.++++..+.+.++..+||.-+......+.+..++.
T Consensus        13 ~~~~~~i~~~~~~~yy~~v~~----~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~   88 (307)
T KOG1315|consen   13 WIPVLIILLVIGWTYYVYVAV----LCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSL   88 (307)
T ss_pred             chhheeeeeeEEEEEEEeehh----hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccc
Confidence            778888888888888765442    2334444333455556677777788889999999999998877765544433332


Q ss_pred             cCCCC-------------CCCCccccccccccCCCCcc------cCCCCCCCceeccCCC
Q 038706           87 QNDTD-------------LPGKYSDNSQIRVLSAESGR------IHRFDGIKHTWLLNVI  127 (127)
Q Consensus        87 k~~hv-------------i~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~WlnNci  127 (127)
                      ++..+             -+-.+|+-|+.-.-+||-||      |-++|| ||-|.|||+
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDH-HCpWi~nCV  147 (307)
T KOG1315|consen   89 ENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDH-HCPWINNCV  147 (307)
T ss_pred             cccCcccccceeeEecCCCCceeecccccccCCccccchhhhhhhhcccc-CCcceecee
Confidence            22222             24468999999888999998      688999 899999996

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.75  E-value=2e-08  Score=87.86  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCCCCccccccccccCCCCcc------cCCCCCCCceeccCCC
Q 038706           91 DLPGKYSDNSQIRVLSAESGR------IHRFDGIKHTWLLNVI  127 (127)
Q Consensus        91 vi~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~WlnNci  127 (127)
                      +.||.||.-|-++.-.+||||      |+|||| ||=|.+|||
T Consensus       417 ~~en~FC~~clirKp~rSkhc~vcnrcVarfDH-hCPwi~ncV  458 (600)
T KOG0509|consen  417 DLENRFCLTCLIRKPLRSKHCSVCNRCVARFDH-HCPWIGNCV  458 (600)
T ss_pred             cccccceeeeeeecCCccchhhhhHHHHhcccc-CCCcccccc
Confidence            345579999999999999998      799999 899999997

>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=98.12  E-value=4.3e-06  Score=67.81  Aligned_cols=33  Identities=9%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CCccccccccccCCCCcc------cCCCCCCCceeccCCC
Q 038706           94 GKYSDNSQIRVLSAESGR------IHRFDGIKHTWLLNVI  127 (127)
Q Consensus        94 n~~C~lC~i~V~~~tKHC------v~~FDh~hc~WlnNci  127 (127)
                      +++|.-|.-.=+++|-||      |-+-|| ||-|+|||.
T Consensus       102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDH-HCPwinnCV  140 (309)
T KOG1313|consen  102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDH-HCPWINNCV  140 (309)
T ss_pred             ccHHhhcCCCCCCCcchhhHHhhHhhcccc-CCchhhccc
Confidence            579999999999999998      788999 899999995

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=97.99  E-value=6.6e-06  Score=68.69  Aligned_cols=65  Identities=12%  Similarity=0.186  Sum_probs=49.2

Q ss_pred             HHHHHhhheeeeeecCCCCCCccCCCccccccccCCCC-CCCCccccccccccCCCCcc------cCCCCCCCceeccCC
Q 038706           54 AFCVFILYVRCTGIDPADPGILIEPDKISAYKLQNDTD-LPGKYSDNSQIRVLSAESGR------IHRFDGIKHTWLLNV  126 (127)
Q Consensus        54 ~~~~~~~~~~~t~iDPaD~~v~~~~~~~~~drsk~~hv-i~n~~C~lC~i~V~~~tKHC------v~~FDh~hc~WlnNc  126 (127)
                      ..++.+-++.|+...|.-+-.-.++..        ..| +.-+||.-||-.=-++|-||      |-.-|| ||-|.|||
T Consensus        58 ~~m~~~ny~~A~~~gPG~vp~~wkPe~--------~~D~~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDH-HCPWinnC  128 (414)
T KOG1314|consen   58 TSMILYNYFNAIFTGPGFVPLGWKPEN--------PKDEMFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDH-HCPWINNC  128 (414)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCC--------ChhHHHHHHHhhccCcCCCccccchHHHHHHHhhcc-CCcchhhc
Confidence            344667889999999987765443322        222 33469999999888999998      677999 89999999


Q ss_pred             C
Q 038706          127 I  127 (127)
Q Consensus       127 i  127 (127)
                      .
T Consensus       129 V  129 (414)
T KOG1314|consen  129 V  129 (414)
T ss_pred             c
Confidence            5

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00