Citrus Sinensis ID: 038748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FVX2 | 517 | Pentatricopeptide repeat- | yes | no | 0.929 | 0.866 | 0.284 | 2e-50 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.921 | 0.870 | 0.274 | 3e-40 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.804 | 0.722 | 0.286 | 3e-35 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.937 | 0.754 | 0.231 | 8e-32 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.937 | 0.754 | 0.229 | 1e-31 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.937 | 0.755 | 0.229 | 2e-31 | |
| Q9FX35 | 568 | Pentatricopeptide repeat- | no | no | 0.809 | 0.686 | 0.267 | 3e-31 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.894 | 0.824 | 0.262 | 5e-31 | |
| Q9S7R4 | 482 | Pentatricopeptide repeat- | no | no | 0.894 | 0.894 | 0.238 | 3e-29 | |
| Q9LUJ4 | 562 | Pentatricopeptide repeat- | no | no | 0.821 | 0.704 | 0.266 | 1e-26 |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 230/453 (50%), Gaps = 5/453 (1%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
++S V ++ K + +++ ++P ++ LD++ +RVSQE VE VL +
Sbjct: 59 YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 118
Query: 86 KFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145
+FF+WS Q + +HS A++++++ K + MWD I +M+K+ +L++ TF V Y
Sbjct: 119 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 178
Query: 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205
A +V +AI F+VME+Y ++ A N LLSA+C+ A + + R PD+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238
Query: 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSL 265
TY+ILLEGW KE ++ A++ F EM I+ G PD V S ++ +L + E + +
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREM-IDAGCHPDIVTY--SIMVDILCKAGRVDEALGIV 295
Query: 266 KRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325
+ M C P + + T L A + M R G + D ++N +I +C
Sbjct: 296 RSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM-ERSGMKADVAVFNSLIGAFCK 354
Query: 326 SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN 385
+N ++L EM G P+ ++ NI+ L++ + EA +F +M+K + +
Sbjct: 355 ANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEP-DADT 413
Query: 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445
++++ + + A K WKYM + T ++L+ GLC+ +A + M
Sbjct: 414 YTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMI 473
Query: 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478
E GI+ + +L+Q+LIK +E V + L +K
Sbjct: 474 EMGIRPSGVTFGRLRQLLIKEEREDVLKFLNEK 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 216/459 (47%), Gaps = 15/459 (3%)
Query: 24 STFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP 83
S+ + + + + +C+I+ VE +L++ +++S +E+VLK +
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVL 110
Query: 84 AVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFS 143
A+ F+W+ Q KH+ +N +++ LGK F +W + MK + +LS TFA +
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISR 170
Query: 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKP 202
Y A +VK+AI F ME++G K + N +L + + DA + F ++ R +P
Sbjct: 171 RYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEP 230
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYE 260
D +Y ILLEGW +E ++ + EM E G++PD V +Y I + C E
Sbjct: 231 DIKSYTILLEGWGQELNLLRVDEVNREMKDE-GFEPDVV----AYGIIINAHCKAKKYEE 285
Query: 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMM 319
+ M +R C P F + + L A EF + GF + YN +
Sbjct: 286 AIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSS--GFPLEAPTYNAL 343
Query: 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379
+ YC+S A K +DEM G P+ +TY+I+ L++ ++ EA ++ M
Sbjct: 344 VGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPT 403
Query: 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVK 439
V +E VR++ + + +AIK W M + L+ LC + L EA +
Sbjct: 404 VSTYE---IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 440 YAKGMAEKGIQVTPFALSKLKQILI-KARKEAVYEELLK 477
Y M + GI+ S+LKQ L+ + RK+ V + ++K
Sbjct: 461 YFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVK 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 13/401 (3%)
Query: 84 AVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASV 141
++ FF W+ + + D SP+ +N ++DL GK FD W I MK NV +S+ TF +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
YV A +A+ F+ ME YGC D A + ++S + R + +A F + R +
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252
Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
PD Y L+ GW + +++ A+K F EM + G +P NV Y S +I L C I
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKL-AGIEP-NVYTY-SIVIDALCRCGQISRA 309
Query: 262 VNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320
+ M++ GC P +TF L G+ + + ++ M ++G PDT YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQ-VYNQM-KKLGCEPDTITYNFLI 367
Query: 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV 380
+C A+K+L+ M+ + T+N +F ++ K R + A ++++M++ +
Sbjct: 368 EAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427
Query: 381 LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440
N +R+++ S + +K K M + T LLV C M A K
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAV---YEELLKK 478
K M E+ +TP +LS + +L + R+ +EEL++K
Sbjct: 488 FKEMVEEKC-LTP-SLSLYEMVLAQLRRAGQLKKHEELVEK 526
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 106/458 (23%), Positives = 209/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 177 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDQGLKPDIV-AHNVMLEGLLRSRKK-SDAI 353
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + A+ ++N+M++NE +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPS 472
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W+ MI+ + +L+ GL EA +Y +
Sbjct: 473 IHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLE 532
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 208/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 117 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 176
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H+ +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 177 PAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 236
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 237 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 296
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 353
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 354 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 412
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + + ++N+M++NE +
Sbjct: 413 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 472
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W MI+ + +L+ GL EA +Y +
Sbjct: 473 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 532
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 533 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 207/458 (45%), Gaps = 6/458 (1%)
Query: 25 TFASHLDVPNLPPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPG 82
T S ++ P ++ +C++I +E VLD+ + +S + + +VL+
Sbjct: 116 TGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK 175
Query: 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142
PA +FF W+A + H +N ++ +L K F+ M ++ M + +L++ TF
Sbjct: 176 PAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAM 235
Query: 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP 202
++ A K A+ F++M++Y K V +N LL ++ R +A + R P
Sbjct: 236 KAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTP 295
Query: 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262
+ TY +LL GW + R++ A + + +M I+ G PD V A++ L LL+ + +
Sbjct: 296 NMMTYTVLLNGWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKK-SDAI 352
Query: 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322
M +G P + + + + ++ A + MV G +PD +Y +I+
Sbjct: 353 KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITG 411
Query: 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382
+ + +LL EM G PD +TYN L + + + + ++N+M++NE +
Sbjct: 412 FGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPS 471
Query: 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
++ Y + + + W MI+ + +L+ GL EA +Y +
Sbjct: 472 IHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLE 531
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
M +KG++ +K + + ++EEL ++ K
Sbjct: 532 EMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAK 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/411 (26%), Positives = 178/411 (43%), Gaps = 21/411 (5%)
Query: 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG- 112
+E LD++ + ++ V ++L+ A +FF W+ +Q + H P A+N ++D+L
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSS 171
Query: 113 ---KNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167
KN F + D + MK+ N V+ + + Y +R + F ++ K
Sbjct: 172 TKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKY--CERYLTHVQKFAKRKRIRVK 229
Query: 168 H--DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225
++ A N LL A+C+ G + LR + R+KPD +T+ +L GW + RD A K
Sbjct: 230 TQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMK 289
Query: 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG--IYETVNSLKRMMERGCN---PGMTFF 280
EM IE G P+N +Y + C + E + M+ +G P F
Sbjct: 290 LLEEM-IEAGHKPENF----TYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 344
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
L + G M+ G PD Y +I C + + A K LDEM
Sbjct: 345 ALMIVALAKNDKAEECFELIGRMIS-TGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMS 403
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
G PDI TYN L + RK EA L+ MV++ + + + ++ + DDP
Sbjct: 404 NKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPD 463
Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
A W M + C ET ++ GL D H EA + + KG+++
Sbjct: 464 GAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKL 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/449 (26%), Positives = 207/449 (46%), Gaps = 18/449 (4%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLI----RVSQETVEQVLKFSYSHP 81
F++ L P P + + ++++ +P +D L+ TL+ RVS VEQVLK +
Sbjct: 25 FSTLLHDPPSPDLVNEISRVLSDHRNP--KDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82
Query: 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--FA 139
PA +FF W+ + HS +++++V++LG + F +WD + ++ N +++ F
Sbjct: 83 FPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFW 142
Query: 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG- 198
VF +Y A+ +A F+ M ++G K V L+ LL ++C A +F G
Sbjct: 143 IVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGF 202
Query: 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CD 256
I P TY+IL+ GW + RD + A+K F EM +E D + AY++ L L K D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEM-LERNCVVD-LLAYNALLDALCKSGDVD 260
Query: 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316
G Y+ + M G P F + ++ A + M R P+ + +
Sbjct: 261 GGYKM---FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM-KRYDLVPNVYTF 316
Query: 317 NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376
N +I C + + A LLDEM+ GA PD TYN + + ++ A+ L + M +
Sbjct: 317 NHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDR 376
Query: 377 NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-MLP 435
+ + + +++ + A + W+ M E T +++ GL L
Sbjct: 377 TKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLE 436
Query: 436 EAVKYAKGMAEKGIQVTPFALSKLKQILI 464
EA +Y + M ++GI + L+ L+
Sbjct: 437 EACRYFEMMIDEGIPPYSTTVEMLRNRLV 465
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 26/457 (5%)
Query: 36 PPTIKTLCEIIANTPSPTVED---VLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSA 92
P + ++I ++P+ T +D +L + V VLK ++H A++FF +
Sbjct: 22 PADSAAIAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHF-- 79
Query: 93 YQLNDKHSPY-----AWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYV 146
L++ H Y +++L +D+ + L +W I M+ + S TFA V Y
Sbjct: 80 --LDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYA 137
Query: 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206
A + A+ F M ++GC D+ + N++L +C+ + A++ R + GR D T
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197
Query: 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG---CDGIYETVN 263
Y ++L GW + A + EMV E G +P N+ Y+ T+LKG I
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMV-ERGINP-NLTTYN----TMLKGFFRAGQIRHAWE 251
Query: 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323
M +R C + + ++ A ++ M+ R G P YN MI +
Sbjct: 252 FFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMI-REGVLPSVATYNAMIQVL 310
Query: 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383
C + A+ + +EMV G P++ TYN+L L + L M N
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370
Query: 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK- 442
+ +R Y + + A+ ++ M C +T N+L++G+ + V K
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKL 430
Query: 443 --GMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
M E+G F +++ L+ +A +E+L+
Sbjct: 431 LLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILR 467
|
Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 189/431 (43%), Gaps = 35/431 (8%)
Query: 39 IKTLCEIIANTPSPTVEDV---LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQL 95
I +C+ + N + EDV L K + V++ V QVL+ + A FF W+ Q
Sbjct: 102 IDKVCDFL-NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160
Query: 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKK---ENVLSLATFASVFSSYVVADRVK 152
HS + +N +VD+LGK FD MW+ + M K +++L T + V + +
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220
Query: 153 DAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
A+ F ME+ YG K D A+NSL+ A+ ++ A + FL++ D IKPD T+ IL
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDT-IKPDARTFNIL 279
Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMM 269
+ G+ K R +A+ M + + PD V Y S++ K +G + VN L+ M
Sbjct: 280 IHGFCKARKFDDARAMMDLMKV-TEFTPD-VVTYTSFVEAYCK--EGDFRRVNEMLEEMR 335
Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
E GCNP + + + + + A ++ M G PD Y+ +I + +
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM-KEDGCVPDAKFYSSLIHILSKTGRF 394
Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
A ++ ++M G D+ YN + + + A L M E E+C
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEG----ESCSPN 450
Query: 390 VRVYMDSDDPYVAIK-----------FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438
V Y P + + +M++N S T LL+ GLC + EA
Sbjct: 451 VETYA----PLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEAC 506
Query: 439 KYAKGMAEKGI 449
+ + KG+
Sbjct: 507 LFFEEAVRKGM 517
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| 224065166 | 499 | predicted protein [Populus trichocarpa] | 0.956 | 0.923 | 0.638 | 1e-174 | |
| 255583417 | 510 | pentatricopeptide repeat-containing prot | 0.954 | 0.901 | 0.65 | 1e-171 | |
| 225453152 | 502 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.958 | 0.570 | 1e-163 | |
| 296087160 | 506 | unnamed protein product [Vitis vinifera] | 0.987 | 0.940 | 0.592 | 1e-163 | |
| 449445204 | 519 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.913 | 0.548 | 1e-157 | |
| 356569552 | 485 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.983 | 0.555 | 1e-154 | |
| 356539840 | 486 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.981 | 0.542 | 1e-147 | |
| 449534079 | 391 | PREDICTED: pentatricopeptide repeat-cont | 0.726 | 0.895 | 0.557 | 1e-117 | |
| 255557793 | 481 | pentatricopeptide repeat-containing prot | 0.987 | 0.989 | 0.428 | 1e-107 | |
| 356560843 | 488 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.977 | 0.429 | 1e-106 |
| >gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/462 (63%), Positives = 360/462 (77%), Gaps = 1/462 (0%)
Query: 22 KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
K+ +F S+L+ PNLPPTIK LCEIIANTPS VE VLD T+IRV Q VEQVLK SYS P
Sbjct: 35 KKPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSP 94
Query: 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
G AVKFFRW+ QLNDKHSPY+WNLVVDLLGKN +FDAMW AIKSMK+EN++SLATFASV
Sbjct: 95 GSAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASV 154
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
FSSYV+ DRVK+AI TF+VM+QYGC +V ALNSLLSAICR+G+T DA +FL V RI
Sbjct: 155 FSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRIL 214
Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
PD D+YAILLEGWEKE +VA+A+ TF +MV VGWDP NVPAYD++L TLL G DG+ E
Sbjct: 215 PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLREA 274
Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
+ M +RGC PG+ FF+LA EECL ++R A IW +V R+GFRPD +YN+MI
Sbjct: 275 MKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMIG 334
Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
++CY N+T A K LDEM+YNG FPD QTYN+LF++L+K +KL EAS + NEM+KNE
Sbjct: 335 IHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFFP 394
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGNLLVAGLCDMHMLPEAVKY 440
N NC AA++ YMDS +PY+AIK WK M+EN+ SDL E GN+LV L HM+PEAVKY
Sbjct: 395 NKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVKY 454
Query: 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
A+ M EKGI++T +LSKLKQ+L + +K +YEELL+K KAH
Sbjct: 455 AEVMIEKGIKLTSSSLSKLKQMLNEEKKPILYEELLRKWKAH 496
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/460 (65%), Positives = 349/460 (75%)
Query: 22 KRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHP 81
K TF S+L+ PNL P IK LCEIIA PS TVE +LD+T + VSQ VEQV+K SYS P
Sbjct: 50 KHPTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFP 109
Query: 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141
GPAVKFFRW+ ++L D HSPY+WNLVVDLLGKNCLFDAMWDAIKSMK + ++SLATFASV
Sbjct: 110 GPAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASV 169
Query: 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201
F SYV A RVKDAI TF+VM QYG DV ALNSLLSAICRDGKT+DA FL V IK
Sbjct: 170 FGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKNSIK 229
Query: 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261
PD DT+AILLEGWEKE ++ N+++TF EMV E+GWDP N PAYD++L TLL G G E
Sbjct: 230 PDADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMGRIGFNEV 289
Query: 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321
+ L+ M E+ C PGM FF+ A EECL ++R A IW M+ GFRPD MYN+MIS
Sbjct: 290 IEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYNLMIS 349
Query: 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381
LYCY+N T A++ LDEMVYNG FPD QTYN+LF+FL+K RKL EAS LFNEM+KNE +
Sbjct: 350 LYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECLP 409
Query: 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441
N NC AAVRV+M S DPY+AIK WK MIEN+ DL ETGNLL+ LCD+HM PEAVKYA
Sbjct: 410 NQANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKYA 469
Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481
+ M KGI+VT + KLK L +ARKE VYE LL+K KA
Sbjct: 470 ESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWKA 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 286/501 (57%), Positives = 354/501 (70%), Gaps = 20/501 (3%)
Query: 1 MARNDKRRHHDDPSPDP--------------------HNKRKRSTFASHLDVPNLPPTIK 40
M + KR +H SP P H KR +F ++L+ PNL P ++
Sbjct: 1 MGKKHKRPNHTASSPPPLHHDHRNKRHSSSTTDSATHHQTPKRPSFPTYLETPNLSPKVR 60
Query: 41 TLCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHS 100
LCEIIANTPS TVE+VL T IRVS E VE LK SY PG AVKFFRWS +QLND HS
Sbjct: 61 LLCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHS 120
Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
PY+WNLVVD+LGKN LFDAMWDA+KSMKK+ +LSLATFAS+FSSYV+ADRV++AI TFDV
Sbjct: 121 PYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDV 180
Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220
MEQYGC D+ ALNSLLSAICRDG+T+ A +FLR V G I+PD DTYAILLEGWE E +
Sbjct: 181 MEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNC 240
Query: 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280
A++TF EMV+++GWDP NV AYDS+L LL G DG E + + M +R C+PGM F+
Sbjct: 241 GAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFY 300
Query: 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
++ +EC+ + +GA+ +W M+ R RPDT MYN MI+L+C + A +LDEMV
Sbjct: 301 RIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMV 360
Query: 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400
NGAFPD +TYN+LF FL++ RKL EA +F+EMV+NE V + NC AAVR+Y+D D Y
Sbjct: 361 CNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVY 420
Query: 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460
AIK WKY+IENH S L ETGNLLV GL D +PEAVKYAK M +GI++T LSKLK
Sbjct: 421 KAIKVWKYIIENHDSGLEETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLK 480
Query: 461 QILIKARKEAVYEELLKKCKA 481
L++ K VY+ELL+K K
Sbjct: 481 HALVEVGKGPVYDELLRKWKT 501
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/478 (59%), Positives = 349/478 (73%), Gaps = 2/478 (0%)
Query: 7 RRHHDDP--SPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIR 64
RRH S H KR +F ++L+ PNL P ++ LCEIIANTPS TVE+VL T IR
Sbjct: 29 RRHSSSTTDSATHHQTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIR 88
Query: 65 VSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAI 124
VS E VE LK SY PG AVKFFRWS +QLND HSPY+WNLVVD+LGKN LFDAMWDA+
Sbjct: 89 VSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAV 148
Query: 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184
KSMKK+ +LSLATFAS+FSSYV+ADRV++AI TFDVMEQYGC D+ ALNSLLSAICRDG
Sbjct: 149 KSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDG 208
Query: 185 KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAY 244
+T+ A +FLR V G I+PD DTYAILLEGWE E + A++TF EMV+++GWDP NV AY
Sbjct: 209 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 268
Query: 245 DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304
DS+L LL G DG E + + M +R C+PGM F+++ +EC+ + +GA+ +W M+
Sbjct: 269 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 328
Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
R RPDT MYN MI+L+C + A +LDEMV NGAFPD +TYN+LF FL++ RKL
Sbjct: 329 SRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKL 388
Query: 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424
EA +F+EMV+NE V + NC AAVR+Y+D D Y AIK WKY+IENH S L ETGNLL
Sbjct: 389 EEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLL 448
Query: 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
V GL D +PEAVKYAK M +GI++T LSKLK L++ K VY+ELL+K K
Sbjct: 449 VTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKTR 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 260/474 (54%), Positives = 350/474 (73%)
Query: 7 RRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVS 66
+ H +PSP P +K F S+LD PNLP IK +CEIIAN+PS VE L+ T I +
Sbjct: 42 QTHFHNPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHAT 101
Query: 67 QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
Q+ VE+VLK SY PG +VKFFRWS +LND+HSPYAWNL++D+LGKN FD MWDA+KS
Sbjct: 102 QQDVEEVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKS 161
Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
MK E +LSLATFASVFSSYVVA+RVKDAI F+VM+ YGC HDV A NSLLSAICRDG T
Sbjct: 162 MKSEGLLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGNT 221
Query: 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
DA +FL++ +I+PD D+YAI+LEGWE E + AK+TFGEM+ E+GWDP N PAY+S
Sbjct: 222 KDADEFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNS 281
Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
+L LL+ +G+ + + +R+ ++ C PG FFKLA +EC+ +++ +++W ++
Sbjct: 282 FLCVLLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQS 341
Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366
I F+PDT+M+N MI+L C+ N+T A +LLDEM+ GAFP+ +TYN+LF+FL+KGRKL +
Sbjct: 342 INFQPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQFLLKGRKLRD 401
Query: 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426
AS +F+EM+KNE + +H NC AA+R+Y++S DP AIK WK M++N+ SDL ETGN L+
Sbjct: 402 ASAIFDEMIKNEFIPSHANCNAAIRIYIESQDPNGAIKVWKCMLKNYDSDLEETGNFLIV 461
Query: 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480
L D LPEAVKYA M ++ I++ L+KLK L + RKE++Y+EL+ K K
Sbjct: 462 RLQDQKRLPEAVKYAHEMVDRAIKLKDSTLAKLKHSLFEVRKESMYDELMVKLK 515
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/477 (55%), Positives = 341/477 (71%)
Query: 6 KRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRV 65
++R H S +K TF S D+PNLP IK+LC +IA T + +VE L I V
Sbjct: 9 RKRAHPSSSSPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQSAAISV 68
Query: 66 SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
+ VE+VLK SY PG AVKFFRWS LND H+PY+WNLVVD+LGKN FDAMWDAIK
Sbjct: 69 TPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIK 128
Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
SM KE +LSLATFASVFSSYV ADR+++AI F++M+ Y DV ALNSLLSAIC +G+
Sbjct: 129 SMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSAICSNGR 188
Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
T+DA +L+V ++PD DTYAIL+EGWE E V AK+TF EMVIE+GWDP NVPAYD
Sbjct: 189 TLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPLNVPAYD 248
Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
S+L TL++G DG+ E + + M +R C PG+ F K A +EC+ ++R AEF W +V
Sbjct: 249 SFLCTLVRGPDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLVV 308
Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
+P MYN+MI L CY +T AA ++LDEMVY GAFPD++TYN+LF+FL+KGRKL
Sbjct: 309 GKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLR 368
Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
EAS +F EMVKNE V +NC AAV+ Y+D +P +AIK WKY++EN+ DL T N LV
Sbjct: 369 EASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLV 428
Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
GL D++ LPEAVKYA+ M ++ I+++ +SKL+Q LIK R+E VYE+LL+K K+H
Sbjct: 429 VGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLRKSKSH 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/477 (54%), Positives = 338/477 (70%)
Query: 6 KRRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRV 65
KR H PSP +K TF S D+PNLP IK+LC +IA T + TVE L I V
Sbjct: 10 KRAHPSSPSPPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISV 69
Query: 66 SQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIK 125
VE+VLK SY PG +VKFFRWS LND H+PY+WNLVVD+LG+N FD MWDA+K
Sbjct: 70 IPHDVEEVLKLSYGFPGQSVKFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVK 129
Query: 126 SMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK 185
SM KE +LSLATFASVFSSYV ADR+++AI F++M+ YGC D FALNSLLSAIC +G+
Sbjct: 130 SMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAICSNGR 189
Query: 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245
T+DA +L+V ++PD DTYAIL+EGWE E+ + +AK+TF EMVIE+GWDP NVPAYD
Sbjct: 190 TLDACDYLQVAKKFVRPDTDTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYD 249
Query: 246 SYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305
S+L TL++G DG+ E + + M +R C PG+ F K A +EC+ ++R AEF W +V
Sbjct: 250 SFLCTLVRGHDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVV 309
Query: 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365
+P + MYN+MI L CY +T AA ++L EMVY GAFPD+ TYN+LF+FL+KGRKL
Sbjct: 310 GKVLQPTSEMYNLMIGLCCYRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLR 369
Query: 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425
EAS +F EMV+NE V +NC AV+ Y+D +P +AIK WK ++EN+ L +T N LV
Sbjct: 370 EASSVFAEMVQNECVPEQDNCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLV 429
Query: 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482
GLC+++ AVKYA+ M +GI ++ LSKL+Q L+K R+E VYE+LL+K K+H
Sbjct: 430 VGLCNLNRPQVAVKYAEDMIGRGISLSSSTLSKLRQSLVKERREYVYEDLLRKWKSH 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449534079|ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/350 (55%), Positives = 260/350 (74%)
Query: 7 RRHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLIRVS 66
+ H +PSP P +K F S+LD PNLP IK +CEIIAN+PS VE L+ T I +
Sbjct: 42 QTHFHNPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHAT 101
Query: 67 QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126
Q+ VE+VLK SY PG +VKFFRWS +LND+HSPYAWNL++D+LGKN FD MWDA+KS
Sbjct: 102 QQDVEEVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKS 161
Query: 127 MKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186
MK E +LSLATFASVFSSYVVA+RVKDAI F+VM+ YGC HDV A NSLLSAICRDG T
Sbjct: 162 MKSEGLLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGNT 221
Query: 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246
DA +FL++ +I+PD D+YAI+LEGWE E + AK+TFGEM+ E+GWDP N PAY+S
Sbjct: 222 KDADEFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNS 281
Query: 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR 306
+L LL+ +G+ + + +R+ ++ C PG FFKLA +EC+ +++ +++W ++
Sbjct: 282 FLCVLLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQS 341
Query: 307 IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356
I F+PDT+M+N MI+L C+ N+T A +LLDEM+ GAFP+ +TYN+LF+
Sbjct: 342 INFQPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQ 391
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 208/485 (42%), Positives = 306/485 (63%), Gaps = 9/485 (1%)
Query: 1 MARNDKRRHHDDPSPDPHNKRKRSTFASHLDVP-NLPPTIKTLCEIIANTPSPTVEDVLD 59
M D+ H S P K K ST ++ +D+ ++ + +TL +I+ +E L
Sbjct: 1 MESTDEYSPHQSQSRTPKPKSK-STHSNGVDIDIDISQSARTLSDILTRVSPHDMESALS 59
Query: 60 KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
T I ++ + + +VLK SYS+P AV+FFRW+ + H+PY+WNL+VDLLGKN LF+A
Sbjct: 60 STGINLTCDIIHEVLKLSYSNPASAVEFFRWAGR--SGTHTPYSWNLMVDLLGKNQLFEA 117
Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
MWDAI+SMK+ENVLS+ATFASVF SY A +AI +FD+M++YG + DV A+NSLLSA
Sbjct: 118 MWDAIRSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSA 177
Query: 180 IC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
IC D +TI A +F + +I PD DTYAILLEGWEKE + A AK FGEMVI VGW P
Sbjct: 178 ICNEDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSP 237
Query: 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
+N+PAY+++L L++ + + L+ M E+GC PG+ F+ A + L ++ A
Sbjct: 238 ENMPAYNAFLNLLVRESQ-TDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRNDVLHAVP 296
Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
+W MV G P+ MYN MI L C +N+ A +L D+MV++GAFPD TY ++F L
Sbjct: 297 MWDIMVD-TGLMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYKMIFRCL 355
Query: 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418
VK +K+ +A+ F+EM+KNEN H +C AA+ ++M DDP +AI+ W YM+++ L
Sbjct: 356 VKNKKVSQAASFFHEMIKNENPPTHLDCAAAITMFMGGDDPEMAIEIWNYMVDDQELPLD 415
Query: 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA--VYEELL 476
E+ N L+ GL ++ L E ++A+ M ++ I + ++KLK K + + ++ L
Sbjct: 416 ESANALLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMAKLKASFYKEGRSSRDRFDSLS 475
Query: 477 KKCKA 481
+K KA
Sbjct: 476 RKWKA 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/487 (42%), Positives = 290/487 (59%), Gaps = 10/487 (2%)
Query: 1 MARNDKR-RHHDDPSPDPHNKRKRSTFASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLD 59
+A N R R PS +P + + F SHLD PN+ T + LC+I+ + +E L
Sbjct: 4 LAENPGRSRDLKHPSKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALS 63
Query: 60 KTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDA 119
+ I +E +VL+ SY++P AVKFFRW+ KH + WNL+VDLLGKN LF+
Sbjct: 64 SSGIVPEEECTNEVLRLSYNYPSSAVKFFRWAGR--GKKHPVHTWNLMVDLLGKNQLFEP 121
Query: 120 MWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179
MWDA++SMK+E LSL+TFASVF SY A R +A+ +FDVM++YG K DV A+NSLLSA
Sbjct: 122 MWDAVRSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSA 181
Query: 180 IC-RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238
IC D +T +F + ++ PD DT+AILLEGWEKE + A AK TFG+MV +GW+
Sbjct: 182 ICSEDNQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNK 241
Query: 239 DNVPAYDSYLITLLKGCDGIYE-TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297
DNV AYD++L+TLL+ G+ + V L+ M + C PG+ FF A + + + A
Sbjct: 242 DNVAAYDAFLMTLLRA--GLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAV 299
Query: 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357
+W MV P+ MYN MI L C + A +LLDEM ++GAFPD TYN++FE
Sbjct: 300 PVWDVMVSG-ELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFEC 358
Query: 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417
LVK +K E F EMVKNE NC AA+ + D DDP A + W Y++EN L
Sbjct: 359 LVKNKKARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPL 418
Query: 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEA--VYEEL 475
E+ N L+ GLC+M E ++A+ + ++ I + +S LK K + A Y+ L
Sbjct: 419 DESANALLIGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSL 478
Query: 476 LKKCKAH 482
++ KAH
Sbjct: 479 YRRWKAH 485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.885 | 0.837 | 0.288 | 1.9e-42 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.885 | 0.795 | 0.288 | 8.9e-38 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.865 | 0.849 | 0.254 | 1.2e-33 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.910 | 0.732 | 0.238 | 4.8e-33 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.910 | 0.732 | 0.236 | 1e-32 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.910 | 0.734 | 0.236 | 1.3e-32 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.890 | 0.820 | 0.268 | 1.7e-32 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.879 | 0.754 | 0.274 | 2.8e-28 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.680 | 0.529 | 0.278 | 1.9e-24 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.852 | 0.645 | 0.250 | 2.4e-23 |
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 127/440 (28%), Positives = 211/440 (47%)
Query: 42 LCEIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGP-AVKFFRWSAYQLNDKHS 100
+C+I+ VE +L++ +++S +E+VLK S+ G A+ F+W+ Q KH+
Sbjct: 69 ICKILTKFTDSKVETLLNEASVKLSPALIEEVLK-KLSNAGVLALSVFKWAENQKGFKHT 127
Query: 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160
+N +++ LGK F +W + MK + +LS TFA + Y A +VK+AI F
Sbjct: 128 TSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHK 187
Query: 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAILLEGWEKERD 219
ME++G K + N +L + + DA + F ++ R +PD +Y ILLEGW +E +
Sbjct: 188 MEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279
+ + EM E G++PD V AY + K E + M +R C P
Sbjct: 248 LLRVDEVNREMKDE-GFEPD-VVAYGIIINAHCKA-KKYEEAIRFFNEMEQRNCKPSPHI 304
Query: 280 FKLAFEECLTGQNLRGA-EFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338
F + + L A EF + GF + YN ++ YC+S A K +DE
Sbjct: 305 FCSLINGLGSEKKLNDALEFFERSKSS--GFPLEAPTYNALVGAYCWSQRMEDAYKTVDE 362
Query: 339 MVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398
M G P+ +TY+I+ L++ ++ EA ++ M V +E VR++ + +
Sbjct: 363 MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYE---IMVRMFCNKER 419
Query: 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458
+AIK W M + L+ LC + L EA +Y M + GI+ S+
Sbjct: 420 LDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSR 479
Query: 459 LKQILI-KARKEAVYEELLK 477
LKQ L+ + RK+ V + ++K
Sbjct: 480 LKQTLLDEGRKDKVTDLVVK 499
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 130/450 (28%), Positives = 215/450 (47%)
Query: 44 EIIANTPSPTVEDV-LDKTLIRVSQ---ETVEQVLKF--SYSHPGP---AVKFFRWSAYQ 94
+ I N PS T+ + LD + I SQ V V++ S H P ++ FF W+ +
Sbjct: 85 DAILN-PSLTLHALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSR 143
Query: 95 LNDKH-SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVK 152
+ H SP+ +N ++DL GK FD W I MK NV +S+ TF + YV A
Sbjct: 144 DDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLAS 203
Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
+A+ F+ ME YGC D A + ++S + R + +A F + R +PD Y L+
Sbjct: 204 EAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVR 263
Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
GW + +++ A+K F EM + G +P NV Y S +I L C I + M++ G
Sbjct: 264 GWCRAGEISEAEKVFKEMKL-AGIEP-NVYTY-SIVIDALCRCGQISRAHDVFADMLDSG 320
Query: 273 CNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331
C P +TF L G+ + + ++ M ++G PDT YN +I +C
Sbjct: 321 CAPNAITFNNLMRVHVKAGRTEKVLQ-VYNQMK-KLGCEPDTITYNFLIEAHCRDENLEN 378
Query: 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391
A+K+L+ M+ + T+N +F ++ K R + A ++++M++ + N +R
Sbjct: 379 AVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMR 438
Query: 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
+++ S + +K K M + T LLV C M A K K M E+ +
Sbjct: 439 MFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKC-L 497
Query: 452 TPFALSKLKQILIKARKEAV---YEELLKK 478
TP +LS + +L + R+ +EEL++K
Sbjct: 498 TP-SLSLYEMVLAQLRRAGQLKKHEELVEK 526
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 110/432 (25%), Positives = 208/432 (48%)
Query: 54 VEDVLDKTLIRVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDL 110
+++ L + I +S++ +++VLK FS+ +P ++F+R+++ HS ++ + ++ +
Sbjct: 58 LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYI 117
Query: 111 LGKNCLFDAMWDA-IKSMKKE-NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168
LG+N FD +W+ I++ +K+ +++S T V V+ + +F ++
Sbjct: 118 LGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPDF 177
Query: 169 -DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227
D N+LL +C++ DA + + +PD T+ ILL GW+ + A+ F
Sbjct: 178 FDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEE---AEAFF 234
Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-TFFKLAFEE 286
EM + G PD V Y+S + K + I + + +M E P + T+ +
Sbjct: 235 EEMKGK-GLKPD-VVTYNSLIDVYCKDRE-IEKAYKLIDKMREEEETPDVITYTTVIGGL 291
Query: 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346
L GQ + E + + G PD YN I +C + G A KL+DEMV G P
Sbjct: 292 GLIGQPDKAREVL--KEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP 349
Query: 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406
+ TYN+ F L L + L+ M+ NE + N ++C ++++ + +A++ W
Sbjct: 350 NATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLW 409
Query: 407 KYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
+ M+ S ++L+ LCD+ + EA K M EKG + + + ++K ++ A
Sbjct: 410 EDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELA 469
Query: 467 RKEAVYEELLKK 478
K L++K
Sbjct: 470 NKHDEVNNLIQK 481
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 4.8e-33, P = 4.8e-33
Identities = 107/449 (23%), Positives = 210/449 (46%)
Query: 36 PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSA 92
P ++ +C++I +E VLD+ + +S + + +VL +F ++ PA +FF W+A
Sbjct: 128 PEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK-PAFRFFCWAA 186
Query: 93 YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
+ H +N ++ +L K F+ M ++ M + +L++ TF ++ A K
Sbjct: 187 ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 246
Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
A+ F++M++Y K V +N LL ++ R +A + R P+ TY +LL
Sbjct: 247 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 306
Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
GW + R++ A + + +M I+ G PD V A++ L LL+ + + M +G
Sbjct: 307 GWCRVRNLIEAARIWNDM-IDQGLKPDIV-AHNVMLEGLLRSRKKS-DAIKLFHVMKSKG 363
Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
P + + + + ++ A + MV G +PD +Y +I+ + +
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
+LL EM G PD +TYN L + + + A+ ++N+M++NE + ++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 393 YMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
Y + + + W+ MI+ C D + +L+ GL EA +Y + M +KG++
Sbjct: 483 YFMARNYEMGRAVWEEMIKKGICPD-DNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKT 541
Query: 452 TPFALSKLKQILIKARKEAVYEELLKKCK 480
+K + + ++EEL ++ K
Sbjct: 542 PLIDYNKFAADFHRGGQPEIFEELAQRAK 570
|
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| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 106/449 (23%), Positives = 209/449 (46%)
Query: 36 PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSA 92
P ++ +C++I +E VLD+ + +S + + +VL +F ++ PA +FF W+A
Sbjct: 128 PEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK-PAFRFFCWAA 186
Query: 93 YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
+ H+ +N ++ +L K F+ M ++ M + +L++ TF ++ A K
Sbjct: 187 ERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 246
Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
A+ F++M++Y K V +N LL ++ R +A + R P+ TY +LL
Sbjct: 247 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 306
Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
GW + R++ A + + +M I+ G PD V A++ L LL+ + + M +G
Sbjct: 307 GWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKKS-DAIKLFHVMKSKG 363
Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
P + + + + ++ A + MV G +PD +Y +I+ + +
Sbjct: 364 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
+LL EM G PD +TYN L + + + + ++N+M++NE + ++
Sbjct: 423 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 482
Query: 393 YMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
Y + + + W MI+ C D + +L+ GL EA +Y + M +KG++
Sbjct: 483 YFVARNYEMGRAVWDEMIKKGICPD-DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKT 541
Query: 452 TPFALSKLKQILIKARKEAVYEELLKKCK 480
+K + + ++EEL ++ K
Sbjct: 542 PLIDYNKFAADFHRGGQPEIFEELAQRAK 570
|
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| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 361 (132.1 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 106/449 (23%), Positives = 208/449 (46%)
Query: 36 PPTIKTLCEIIAN--TPSPTVEDVLDKTLIRVSQETVEQVL-KFSYSHPGPAVKFFRWSA 92
P ++ +C++I +E VLD+ + +S + + +VL +F ++ PA +FF W+A
Sbjct: 127 PEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARK-PAFRFFCWAA 185
Query: 93 YQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152
+ H +N ++ +L K F+ M ++ M + +L++ TF ++ A K
Sbjct: 186 ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 245
Query: 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212
A+ F++M++Y K V +N LL ++ R +A + R P+ TY +LL
Sbjct: 246 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 305
Query: 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272
GW + R++ A + + +M I+ G PD V A++ L LL+ + + M +G
Sbjct: 306 GWCRVRNLIEAARIWNDM-IDHGLKPDIV-AHNVMLEGLLRSMKKS-DAIKLFHVMKSKG 362
Query: 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332
P + + + + ++ A + MV G +PD +Y +I+ + +
Sbjct: 363 PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFGTQKKLDTV 421
Query: 333 MKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392
+LL EM G PD +TYN L + + + + ++N+M++NE + ++
Sbjct: 422 YELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKS 481
Query: 393 YMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451
Y + + + W MI+ C D + +L+ GL EA +Y + M +KG++
Sbjct: 482 YFVARNYEMGRAVWDEMIKKGICPD-DNSYTVLIRGLISEGKSREACRYLEEMLDKGMKT 540
Query: 452 TPFALSKLKQILIKARKEAVYEELLKKCK 480
+K + + ++EEL ++ K
Sbjct: 541 PLIDYNKFAADFHRGGQPEIFEELAQRAK 569
|
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| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.7e-32, P = 1.7e-32
Identities = 121/451 (26%), Positives = 213/451 (47%)
Query: 26 FASHLDVPNLPPTIKTLCEIIANTPSPTVEDVLDKTLI----RVSQETVEQVLKFSYSHP 81
F++ L P P + + ++++ +P +D L+ TL+ RVS VEQVLK +
Sbjct: 25 FSTLLHDPPSPDLVNEISRVLSDHRNP--KDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82
Query: 82 GPAVKFFRWSAYQLND-KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLAT--F 138
PA +FF W A ++ D HS +++++V++LG + F +WD + ++ N +++ F
Sbjct: 83 FPAHRFFLW-ARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVF 141
Query: 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID-AWQFLRVVD 197
VF +Y A+ +A F+ M ++G K V L+ LL ++C D K ++ A +F
Sbjct: 142 WIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLC-DKKHVNHAQEFFGKAK 200
Query: 198 G-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG-- 254
G I P TY+IL+ GW + RD + A+K F EM +E D + AY++ L L K
Sbjct: 201 GFGIVPSAKTYSILVRGWARIRDASGARKVFDEM-LERNCVVDLL-AYNALLDALCKSGD 258
Query: 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314
DG Y+ + + G P F + ++ A + M R P+ +
Sbjct: 259 VDGGYKMFQEMGNL---GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMK-RYDLVPNVY 314
Query: 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374
+N +I C + + A LLDEM+ GA PD TYN + + ++ A+ L + M
Sbjct: 315 TFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRM 374
Query: 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH-M 433
+ + + + +++ + A + W+ M E T +++ GL
Sbjct: 375 DRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGK 434
Query: 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464
L EA +Y + M ++GI + L+ L+
Sbjct: 435 LEEACRYFEMMIDEGIPPYSTTVEMLRNRLV 465
|
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| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 2.8e-28, P = 2.8e-28
Identities = 125/456 (27%), Positives = 203/456 (44%)
Query: 39 IKTLCEIIANTPSPTVEDV---LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQL 95
I +C+ + N + EDV L K + V++ V QVL+ + A FF W+ Q
Sbjct: 102 IDKVCDFL-NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160
Query: 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVK 152
HS + +N +VD+LGK FD MW+ + M K +++L T + V + +
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220
Query: 153 DAITTFDVMEQ-YGCKHDVFALNSLLSAICRDGKTIDAWQ-FLRVVDGRIKPDNDTYAIL 210
A+ F ME+ YG K D A+NSL+ A+ ++ A + FL++ D IKPD T+ IL
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFD-TIKPDARTFNIL 279
Query: 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS-LKRMM 269
+ G+ K R +A+ M + + PD V Y S++ K +G + VN L+ M
Sbjct: 280 IHGFCKARKFDDARAMMDLMKV-TEFTPD-VVTYTSFVEAYCK--EGDFRRVNEMLEEMR 335
Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
E GCNP + + + + + A ++ M G PD Y+ +I + +
Sbjct: 336 ENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMK-EDGCVPDAKFYSSLIHILSKTGRF 394
Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389
A ++ ++M G D+ YN + + + A L M E E+C
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEG----ESCSPN 450
Query: 390 VRVYMDSDDPYVAIKFWK-------YMIENHCS-DLSETGNLLVAGLCDMHMLPEAVKYA 441
V Y K K +M++N S D+S T LL+ GLC + EA +
Sbjct: 451 VETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVS-TYILLIRGLCMSGKVEEACLFF 509
Query: 442 KGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477
+ KG+ P S K ++ + K+ + E LK
Sbjct: 510 EEAVRKGM--VPRD-STCKMLVDELEKKNMAEAKLK 542
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 99/356 (27%), Positives = 165/356 (46%)
Query: 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180
D + M++ N+ S+ ++ V S DA++ F+ ME G K DV +SL+ +
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 181 CRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD 239
C DGK D + LR + GR I PD T++ L++ + KE + AK+ + EM+ G PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIAPD 349
Query: 240 NVPAYDSYLITLLK-GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298
+ Y+S + K C ++E M+ +GC P + + + + +
Sbjct: 350 TI-TYNSLIDGFCKENC--LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406
Query: 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358
++ + + G P+T YN ++ +C S + AA +L EMV G P + TY IL + L
Sbjct: 407 LFREISSK-GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Query: 359 VKGRKLWEASGLFNEMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410
+L +A +F +M K+ N++ H C A+ +V DD + F
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS-KV----DDAWSL--FCSLSD 518
Query: 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466
+ D+ T N+++ GLC L EA + M E G F + ILI+A
Sbjct: 519 KGVKPDVV-TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYN----ILIRA 569
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| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 106/423 (25%), Positives = 181/423 (42%)
Query: 52 PTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL 111
P +E L+++ + + +E+VL +FF W+A Q HS + +V +L
Sbjct: 98 PKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKIL 157
Query: 112 GKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD 169
K F A+W I+ M+KEN ++ F + + AD VK AI D M ++G + D
Sbjct: 158 SKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPD 217
Query: 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK-PDNDTY-AILLEGWEKERDVANAKKTF 227
+ LL A+C+ G DA + D R++ P N Y LL GW + + AK
Sbjct: 218 EYVFGCLLDALCKHGSVKDAAKLFE--DMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVL 275
Query: 228 GEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287
+M E G++PD V Y + L++ + + + L+ M RG P + + +
Sbjct: 276 VQMN-EAGFEPDIVD-YTN-LLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQAL 332
Query: 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347
+ A ++ M R D Y ++S +C + +LD+M+ G P
Sbjct: 333 CKVDRMEEAMKVFVEME-RYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPS 391
Query: 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407
TY + K E L +M + E + +R+ + A++ W
Sbjct: 392 ELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWN 451
Query: 408 YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKLK-QILIK 465
M EN S +T +++ GL L EA + K M +G+ V+ + KL ++K
Sbjct: 452 EMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLK 511
Query: 466 ARK 468
+K
Sbjct: 512 DKK 514
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00002299 | hypothetical protein (499 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355
PD YN +I YC + A+KL +EM G P++ TY+IL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 169 DVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEG 213
DV N+L+ C+ GK +A + IKP+ TY+IL++G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340
G +PD YN +I C + A++LLDEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 346 PDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377
PD+ TYN L + K K+ EA LFNEM K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR 32
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182
T+ ++ Y +V++A+ F+ M++ G K +V+ + L+ +C+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 14/206 (6%)
Query: 158 FDVM-----EQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKPDNDTYAI 209
FDV+ E + D + +L+ A G + + +Q + + IK + Y I
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN--IKGTPEVYTI 619
Query: 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269
+ ++ D A + +M + G PD V + S L+ + + + L+
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMK-KKGVKPDEV--FFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329
++G G + C +N + A ++ + I RP N +I+ C N+
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELY-EDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 330 GAAMKLLDEMVYNGAFPDIQTYNILF 355
A+++L EM G P+ TY+IL
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.11 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.01 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.97 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.92 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.91 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.86 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.71 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.66 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.42 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.4 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.29 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.23 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.1 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.05 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.76 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.6 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.05 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.7 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.64 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.43 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.36 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.12 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.1 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.96 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.76 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.14 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.75 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.42 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.31 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.18 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.69 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.82 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.26 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.38 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.21 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.74 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.41 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.72 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.37 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.17 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.15 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.83 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.5 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 87.47 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.87 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.1 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.9 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.84 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 85.41 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 85.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.36 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.11 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.02 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.98 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.42 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.39 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.0 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.61 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.02 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.85 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 82.64 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.37 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 82.31 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.04 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.26 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.23 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.44 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=498.71 Aligned_cols=397 Identities=14% Similarity=0.205 Sum_probs=246.8
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|++++|+++|++|....-..++...++.++..|.+.|.+++|+.+|+.|.. |+..+|+.+|.+|++.|+++.|.++
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666666655422345555556666666666666666666666554 5566666666666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ++.||..+|+.+|.+|++.|++++|.++|++|... |+
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv 538 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NV 538 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CC
Confidence 66666666666666666666666666666666666666543 55666666666666666666666666666666543 56
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME--RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
.| +..+|+.++.++++. |++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|. +.|+.|+..
T Consensus 539 ~P-D~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~-e~gi~p~~~ 615 (1060)
T PLN03218 539 KP-DRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKGTPE 615 (1060)
T ss_pred CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCChH
Confidence 66 355666666666666 666666666666654 3556666666666666666666666666666663 556666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (482)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|.+.|+.++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 038748 475 LLKKCKA 481 (482)
Q Consensus 475 ~~~~m~~ 481 (482)
++++|.+
T Consensus 776 l~~~M~k 782 (1060)
T PLN03218 776 LLSQAKE 782 (1060)
T ss_pred HHHHHHH
Confidence 6666553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=493.27 Aligned_cols=420 Identities=12% Similarity=0.172 Sum_probs=392.4
Q ss_pred HHHHhhhcCC-CCCHHHHHHHHHh--hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc
Q 038748 54 VEDVLDKTLI-RVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130 (482)
Q Consensus 54 ~~~~l~~~~~-~~~~~~~~~ll~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 130 (482)
+...|...++ +++...+..++.. ..|..+.|+.+|+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 6666777775 4555555666663 36889999999998764 99999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHH
Q 038748 131 NV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYA 208 (482)
Q Consensus 131 ~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 208 (482)
|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 97 899999999999999999999999999999999999999999999999999999999999999864 8999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 287 (482)
.+|.+|++.|++++|.++|++|... .++.| +..+|++++.+|++. |++++|.++|++|.+.|+.|+..+|+.+|.+|
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999753 47899 578999999999999 99999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEA 367 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 367 (482)
++.|++++|.++|++|. +.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 625 ~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999995 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 368 SGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH----hc-------------------cHHHHHHHHHHHhh
Q 038748 448 GIQVTPFALSKLKQILIK----AR-------------------KEAVYEELLKKCKA 481 (482)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~ 481 (482)
|+.||..+|+.++..|.+ ++ ..++|..+|++|.+
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 999999999999876432 21 23678889998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=469.62 Aligned_cols=406 Identities=16% Similarity=0.116 Sum_probs=251.9
Q ss_pred HHHHhhhc-CCCCCHHHHHHHHHhh--cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc
Q 038748 54 VEDVLDKT-LIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE 130 (482)
Q Consensus 54 ~~~~l~~~-~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 130 (482)
+...|... +..|+..+|+.++..+ .++.+.|.+++..+... |..||..+||.++..|++.|+++.|.++|++|.+
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 186 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE- 186 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 44445444 3678888888888833 56778888888877763 7888888888888888888888888888888865
Q ss_pred CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh-CCCCCCHHHHHH
Q 038748 131 NVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-GRIKPDNDTYAI 209 (482)
Q Consensus 131 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 209 (482)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .+..||..+|+.
T Consensus 187 --~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 187 --RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred --CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 46677888888888888888888888888877777777766666666655555555555555533 355555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
|+++|++.|++++|.++|++|.. + +..+|++++.+|++. |++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~-----~-~~vt~n~li~~y~~~-g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPE-----K-TTVAWNSMLAGYALH-GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-----C-ChhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 55555555555555555555532 1 445555555555555 5555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 369 (482)
.|++++|.+++..|. +.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.+
T Consensus 338 ~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 338 LALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred ccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 555555555555553 455555555555555555555555555555555542 455555555555555555555555
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 555555555555555555555555555555555555555543 355555555555555555555555555555443 3
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 449 IQVTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
+.|+..+|++|+.+|...|+.+.|..++++
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 444444444444444444444444444333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=461.99 Aligned_cols=408 Identities=11% Similarity=0.069 Sum_probs=386.8
Q ss_pred HHHHhhhcCCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC
Q 038748 54 VEDVLDKTLIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN 131 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 131 (482)
+...+.+.|+.|+..+++.++. ...|+.+.|.++|+.|.. ||..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 145 l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5667778899999999999999 457999999999998865 899999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 132 V-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 132 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
+ |+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||.|+.+|++.|++++|.++|+.|. .+|..+|+.+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~l 296 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSM 296 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHH
Confidence 7 89999999999999999999999999999999999999999999999999999999999999997 5799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 290 (482)
+.+|++.|++++|.++|++|.. .|+.| +..+|+.++.++++. |++++|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~-~g~~p-d~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRD-SGVSI-DQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 9999999999999999999986 49999 578999999999999 99999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
|++++|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++
T Consensus 374 G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 374 GRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999995 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 371 FNEMVK-NENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 371 ~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+.+
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~- 524 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG- 524 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-
Confidence 999986 599999999999999999999999999998765 578999999999999999999999999999997544
Q ss_pred CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhC
Q 038748 450 QV-TPFALSKLKQILIKARKEAVYEELLKKCKAH 482 (482)
Q Consensus 450 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 482 (482)
| +..+|..+++.|.+.|++++|.+++++|++.
T Consensus 525 -p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 525 -PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5 4679999999999999999999999999863
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=472.45 Aligned_cols=397 Identities=15% Similarity=0.118 Sum_probs=329.8
Q ss_pred HHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Q 038748 68 ETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSS 144 (482)
Q Consensus 68 ~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~ 144 (482)
...+.++. ...|+.+.|.++|+.|.. ||..+||.+|.+|++.|++++|+++|++|...|+ |+..||+.++.+
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 33344444 235667778888887654 7888899999999999999999999999988886 888888888888
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
|+..+++..+.+++..|.+.|+.||..+||.|+.+|++.|+++.|..+|++|. .||..+||++|.+|++.|++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHH
Confidence 88888888888888888888888899999999999999999999999999987 578999999999999999999999
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++|++|.. .|+.| +..+|+.++.++... |+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 274 ~lf~~M~~-~g~~P-d~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 274 ELFFTMRE-LSVDP-DLMTITSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHH-cCCCC-ChhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999986 48999 578999999999999 9999999999999999999999999999999999999999999999985
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 351 -----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 351 -----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred -----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 478888999999999999999999999999998988998888888888888888888888888888887777777
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc------------------------------CC--------------------
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN------------------------------HC-------------------- 414 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------------~~-------------------- 414 (482)
+|+.||.+|++.|++++|.++|++|.+. ++
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 7777777777777766666666554321 11
Q ss_pred ---------------------------------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 415 ---------------------------------------------SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 415 ---------------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.||..+||++|.+|++.|+.++|+++|++|.+.|+
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455677777777777777777778888877777
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 450 QVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.||..||..++.+|.+.|++++|.++|++|+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7888888888888877888888888777776
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=468.77 Aligned_cols=414 Identities=14% Similarity=0.087 Sum_probs=268.4
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhh--cCCchhHhHHhhhhhcCCCCCC-------------------------------C
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFS--YSHPGPAVKFFRWSAYQLNDKH-------------------------------S 100 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~-------------------------------~ 100 (482)
+...|...|+.|+..+|+.+|+.+ .++...+.+++..+.+ .|..| |
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 667777788888888888777743 2334444444444443 24444 4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
..+||.+|.+|++.|++++|+++|++|...|+ |+..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+||.|+.+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 45555555555555555555555555555543 45555555555555555555555555555555555555555555555
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|... |+.| +..+|+.++.++++. |+++
T Consensus 333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~P-d~~t~~~ll~a~~~~-g~~~ 406 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSP-DEITIASVLSACACL-GDLD 406 (857)
T ss_pred HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCC-CceeHHHHHHHHhcc-chHH
Confidence 555555555555555554 345555555555555555555555555555432 5555 244555555555555 5555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
++.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|+.+|++|
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555553 234555555555555555555566666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------ccChhhHHHH
Q 038748 340 VYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN------------------------------VLNHENCRAA 389 (482)
Q Consensus 340 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l 389 (482)
.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+ .+|..+|+++
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l 560 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL 560 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH
Confidence 54 3666666666666555555555555555554444443 4567778889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcc
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 038748 469 EAVYEELLKKCK 480 (482)
Q Consensus 469 ~~~a~~~~~~m~ 480 (482)
+++|.+++++|.
T Consensus 641 ~~eA~~~~~~m~ 652 (857)
T PLN03077 641 LTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHCC
Confidence 999999999983
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=241.36 Aligned_cols=390 Identities=14% Similarity=0.067 Sum_probs=312.2
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|.+.|+.+.. ..+.+..++..+...+.+.|++++|..+|+++...++.+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 346777778888777665 344567777778888888888888888888887777767777777888888888888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
.+++.+.+.. +.+...|..+..++...|++++|...|+.+....+.+...+..+..++.+.|++++|..+|+++..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 663 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--- 663 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Confidence 8888887643 346677888888888888888888888887655566777788888888888888888888888763
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
..|++..++..+...+... |++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|..+. .. .|+..+
T Consensus 664 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~ 738 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KR--APSSQN 738 (899)
T ss_pred cCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh--CCCchH
Confidence 4676777888888888888 88888888888887764 4466677778888888899999988888886 22 455577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+... .+...++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 7778888888999999999888888763 34677788888888889999999999999988754 367788888999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 475 (482)
.|+ .+|+++++.+.+.. +-+..++..+...+...|++++|.++|+++.+.+.. ++.++..+..++.+.|++++|.++
T Consensus 817 ~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999 78999999888753 234467778888899999999999999999998754 889999999999999999999999
Q ss_pred HHHHhh
Q 038748 476 LKKCKA 481 (482)
Q Consensus 476 ~~~m~~ 481 (482)
+++|.+
T Consensus 894 ~~~~~~ 899 (899)
T TIGR02917 894 LDKLLN 899 (899)
T ss_pred HHHHhC
Confidence 999864
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-25 Score=230.98 Aligned_cols=388 Identities=15% Similarity=0.097 Sum_probs=242.6
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|+.+.|.+.|+.+.. ..+.+...+..+...+...|++++|.+.|+++...++.+..++..+...+.+.|++++|..+
T Consensus 478 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 478 KGDLAKAREAFEKALS--IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555555555443 22334445555555555555555565555555555555555555556666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
++++.+.+. .+...+..+...+...|++++|.++++.+....+.+..+|..+..+|...|++++|...|+.+.. ..
T Consensus 556 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 631 (899)
T TIGR02917 556 LEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA---LQ 631 (899)
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC
Confidence 666555432 24445555666666666666666666665555555666666666666666666666666666653 24
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
|++...+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|.++++.+. ... +.+...+.
T Consensus 632 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~ 707 (899)
T TIGR02917 632 PDSALALLLLADAYAVM-KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-KQH-PKAALGFE 707 (899)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-cCChHHHH
Confidence 54555666666666666 66666666666666542 2345566666666666677777777766664 222 34555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 397 (482)
.+...+...|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+... .+...+..+...|...|
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 66666777777777777777766643 3445566666777777777777777777766543 25666677777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 038748 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
++++|.+.|+.+.+.. +.+...++.+...+...|+ .+|+.+++++.+... -++.++..+..++...|++++|.++++
T Consensus 785 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777777654 3455667777777777777 667777777765532 344566677777788888888888887
Q ss_pred HHhh
Q 038748 478 KCKA 481 (482)
Q Consensus 478 ~m~~ 481 (482)
++.+
T Consensus 862 ~a~~ 865 (899)
T TIGR02917 862 KAVN 865 (899)
T ss_pred HHHh
Confidence 7764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=183.01 Aligned_cols=302 Identities=12% Similarity=0.039 Sum_probs=176.8
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCC
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD---VFALNSLLSAICRDGK 185 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~ 185 (482)
..+...|++++|+..|.++.+.++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667788888888888887776777778888888888888888888887776432221 2456677777777788
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHH
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
+++|..+|+++....+.+..++..++..+.+.|++++|.+.++.+... +-.+.. ...+..+...+... |++++|.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALAR-GDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhC-CCHHHHH
Confidence 888887777766555556677777777777777887777777777643 111111 11233344444555 6666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 263 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++. ..+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655532 2223444555555555666666666666554 2111111234455555555555555555555555553
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCh
Q 038748 343 GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD---SDDPYVAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 343 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~ 418 (482)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++.|.+.++.|+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444455555555555555555555555543 3455555555544442 33555555555555554444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=183.18 Aligned_cols=317 Identities=15% Similarity=0.086 Sum_probs=261.5
Q ss_pred HHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC-
Q 038748 56 DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS- 134 (482)
Q Consensus 56 ~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 134 (482)
+..++.........+..+.....|+++.|...|..+.. ..+.+..++..+...+...|++++|..+++.+...+..+
T Consensus 26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 33444444555656666666778999999999999887 445567889999999999999999999999998865322
Q ss_pred ---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC-----HHH
Q 038748 135 ---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD-----NDT 206 (482)
Q Consensus 135 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 206 (482)
..++..+...|...|++++|..+|+++.+.. ..+..+++.++..+...|++++|.+.++.+....+.+ ...
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3568889999999999999999999998763 3467889999999999999999999999976532222 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEE 286 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 286 (482)
+..+...+.+.|++++|...|+++.+ ..|++...+..+...+... |++++|.+.++++...+......++..++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA---ADPQCVRASILLGDLALAQ-GDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh---HCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 56778888999999999999999974 3676777888888999999 9999999999999876433335668889999
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCC
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---GRK 363 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~ 363 (482)
|...|++++|...++.+. +. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+
T Consensus 259 ~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 259 YQALGDEAEGLEFLRRAL-EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc
Confidence 999999999999999996 32 567777788999999999999999999998875 6899999988887765 568
Q ss_pred HHHHHHHHHHHHhCCCccChh
Q 038748 364 LWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~ 384 (482)
.+++..+++.+.+.++.|++.
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCC
Confidence 999999999999887777765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-19 Score=184.67 Aligned_cols=388 Identities=10% Similarity=0.001 Sum_probs=266.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC--HHHHH------------HH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS--LATFA------------SV 141 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~l 141 (482)
...|++++|+..|+.... ..+.+...+..+...+.+.|++++|+..|++..+..+.+ ...|. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 346888899999988776 444577888888899999999999999999888766522 11121 22
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH--------
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-------- 213 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-------- 213 (482)
...+.+.|++++|...|++..+... .+...+..+..++...|++++|++.|++.....+.+...+..+...
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 3456778899999999998888643 3566677788888888999999998888665444444444444333
Q ss_pred ----------------------------------HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 214 ----------------------------------WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 214 ----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|.+.|++..+ ..|++...+..+...+... |+++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~~~~~~~~LA~~~~~~-G~~~ 512 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPGSVWLTYRLAQDLRQA-GQRS 512 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-CCHH
Confidence 3345666666666666542 3555555555666666666 6666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH---------HHHHHHHHHHHhcCCHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT---------HMYNMMISLYCYSNETG 330 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~ 330 (482)
+|...++++.+.. +.+...+..+...+...++.++|...++.+. .....++. ..+..+...+...|+.+
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 6666666665432 1223333333334455666666666666553 11111111 11223445566777888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+|..+++. .+.+...+..+...+.+.|++++|...|+...+.... +...+..++..|...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88777762 2345556677888899999999999999999987543 67788899999999999999999999887
Q ss_pred HcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 411 ENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ--V---TPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 411 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+. .|+ ...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|++.+++..
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 343 456677788888999999999999998765422 2 22466667888999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-19 Score=174.35 Aligned_cols=325 Identities=11% Similarity=0.045 Sum_probs=223.7
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+.++..+.. ..+-+...+..++......|+++.|...|+++....+.+...+..+...+...|++++|.
T Consensus 53 ~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 456888888888887666 333445555566666667888888888888888887777777888888888888888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
..++...+.. +.+...+..+...+...|++++|...++.+....+.+...+..+. .+...|++++|...++.+...
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~-- 206 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPF-- 206 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc--
Confidence 8888887753 234566777778888888888888888776443334444444433 467778888888888877642
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhcccCCCC
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG----AEFIWGAMVGRIGFRP 311 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~ 311 (482)
..+++...+..+...+... |++++|++.++++.... +.+...+..+...+...|++++ |...|+..++.. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~ 282 (656)
T PRK15174 207 FALERQESAGLAVDTLCAV-GKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SD 282 (656)
T ss_pred CCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CC
Confidence 1112233334445566666 88888888888877654 3346666777778888888775 677787776221 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
+...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+.. +...+..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 4667777788888888888888888887775322 3445666677778888888888888887765322 2223334456
Q ss_pred HHhcCCChHHHHHHHHHHHHc
Q 038748 392 VYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 392 ~~~~~~~~~~a~~~~~~m~~~ 412 (482)
++...|++++|.+.|+...+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 677888888888888887764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-18 Score=170.07 Aligned_cols=394 Identities=11% Similarity=-0.023 Sum_probs=275.8
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|..... ..|+...|..+..+|.+.|++++|++.++...+.++.+..+|..+..+|...|++++|+
T Consensus 138 ~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 346899999999998765 34678889999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC----------------------------CCCC-HHH
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR----------------------------IKPD-NDT 206 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------------~~~~-~~~ 206 (482)
.-|......+...+.. ...++..+........+...++.-... ..++ ...
T Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 8887665432111111 111111111100011111111100000 0000 000
Q ss_pred HHHHHHH---HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038748 207 YAILLEG---WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283 (482)
Q Consensus 207 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 283 (482)
+..+... ....+++++|.+.|+.........|.....+..+...+... |++++|+..|++..... +-....|..+
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 1111100 12246788999999888754334566667788888888888 99999999999888753 2235577788
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
...+...|++++|...|+.+++.. +.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|+
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCC
Confidence 888889999999999999887332 33567888888889999999999999999887532 245667777788888999
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChhHH
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSE------TGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A 437 (482)
+++|...|+..++... .+...++.+..++...|++++|.+.|+...+.....+.. .++.....+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999887542 256778888899999999999999999988643211111 112222233446899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 438 VKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 438 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+++++....+. .+...+..+...+.+.|++++|++++++..
T Consensus 528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999998877652 344578888999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-18 Score=178.54 Aligned_cols=356 Identities=9% Similarity=-0.030 Sum_probs=227.7
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC-CHhhHH------------HH
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH-DVFALN------------SL 176 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l 176 (482)
.+...|++++|+..|++..+..+.+..++..+..++.+.|++++|+..|++..+..... ....|. .+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 44556778888888888777776677777777788888888888888887777643221 111111 12
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
...+.+.|++++|...|++.....+.+...+..+..++...|++++|++.|++..+ ..|++..++..+...+. . +
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~-~-~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYR-Q-Q 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH-h-c
Confidence 33456777888888888776655556667777777788888888888888877763 35655555554444432 2 3
Q ss_pred ChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcC
Q 038748 257 GIYETVNSLKRMMERGCN--------PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSN 327 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 327 (482)
+.++|+.+++.+...... .....+..+...+...|++++|.+.|++.++. .| +...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 445554444432211000 00112233344455566666666666666522 23 3445555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH--------------------------------------------HHHHHHHhcCC
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYN--------------------------------------------ILFEFLVKGRK 363 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~--------------------------------------------~ll~~~~~~g~ 363 (482)
++++|...++++.+.... +...+. .....+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 666666666666553211 222222 22334455566
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.++|..+++. ...+...+..+...+.+.|++++|++.|+...+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655551 22345566778888999999999999999999854 23557888899999999999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 444 MAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 444 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+.. +.+...+..+..++.+.|++++|.++++++.+
T Consensus 663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 87653 23456677788889999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-18 Score=170.66 Aligned_cols=368 Identities=8% Similarity=-0.030 Sum_probs=291.0
Q ss_pred cCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..+|+.-.-.|....... ....+..-.-.++..+.+.|++++|..+++......+.+...+..++.+....|++++|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHH
Confidence 456666666666444321 1223344566777888899999999999999999988777788888888889999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
.|+.+.+... .+...+..+...+...|++++|...++......+.+...+..+..++...|++++|...++.+.. .
T Consensus 98 ~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~ 173 (656)
T PRK15174 98 VVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---E 173 (656)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---h
Confidence 9999998653 35677888889999999999999999997765677788999999999999999999999998864 3
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMY 316 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (482)
.|++...+..+. .+... |++++|...++.+.+....++...+..+..++...|++++|...+..+.+. . +.+...+
T Consensus 174 ~P~~~~a~~~~~-~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~-p~~~~~~ 249 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-G-LDGAALR 249 (656)
T ss_pred CCCCHHHHHHHH-HHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHH
Confidence 565555555543 46777 999999999999887653344555566678889999999999999999733 2 3457788
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 317 NMMISLYCYSNETGA----AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 317 ~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
..+...|...|++++ |...|++..+... .+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999986 8999999988632 25667888899999999999999999999986543 45667788899
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLSET-GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
|.+.|++++|.+.++.+.+.+ |+... +..+..++...|++++|...|++..+....-....|.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 999999999999999998753 55433 4445677899999999999999998765332233443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-17 Score=168.82 Aligned_cols=409 Identities=11% Similarity=-0.004 Sum_probs=307.6
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 62 LIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 62 ~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
..+.++..+...+. .-.|+.++|++++..... ..+.+...+..+...+...|++++|.++|++..+..+.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34677777777777 447999999999987764 34556667999999999999999999999999999888888888
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|++++|+..+++..+... .+.. +..+..++...|+.++|+..++++....+.+...+..+..++...|.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988642 3555 88888899999999999999999887667788888888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCC-----hhhHHHHHHHHHccC----CCh---HHHHHHHHHHHHc-CCCCCHH-HHH----
Q 038748 220 VANAKKTFGEMVIEVGWDPDN-----VPAYDSYLITLLKGC----DGI---YETVNSLKRMMER-GCNPGMT-FFK---- 281 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~----~~~---~~a~~~~~~m~~~-~~~~~~~-~~~---- 281 (482)
.+.|+..++.... .|+. .......+....... +++ ++|++.++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 9999998876642 3321 011222222222210 234 7788888888864 2223221 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP---DIQTYNILFEFL 358 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~ 358 (482)
..+.++...|++++|...|+.+.+.....|+. ....+...|...|++++|+.+|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 11345567799999999999997332212332 22225678999999999999999987653211 123456667788
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------ccC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 359 VKGRKLWEASGLFNEMVKNEN-----------VLN---HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
...|++++|.++++.+.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987532 122 1244567778889999999999999998753 3445788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...+...|++++|++.+++..+.. +.+...+......+.+.|++++|+.+++++.+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999999999998765 23456777777789999999999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-19 Score=161.58 Aligned_cols=328 Identities=14% Similarity=0.123 Sum_probs=162.9
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh---------
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA--------- 172 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------- 172 (482)
++|..+...+-..|++++|+.+++.+.+..+.....|..+..++...|+.+.|.+.|.+..+. .|+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 455556666666666666666666666666555566666666666666666666666665553 243332
Q ss_pred --------------------------HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 173 --------------------------LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 173 --------------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
|+.|...+-..|+...|++.|++...-.+.-...|-.|...|...+.++.|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 333333333444444444444443322222233444445555555555555554
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
|.+.. ...|....++..+...|... |.++-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.+...+.
T Consensus 275 Y~rAl---~lrpn~A~a~gNla~iYyeq-G~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 275 YLRAL---NLRPNHAVAHGNLACIYYEQ-GLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHH---hcCCcchhhccceEEEEecc-ccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 44443 33444444444444444444 5555555555554442 222 33455555555555555555555555441
Q ss_pred ccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-
Q 038748 306 RIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN- 382 (482)
Q Consensus 306 ~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 382 (482)
+.| -....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++ +.|+
T Consensus 349 ---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 349 ---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred ---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 122 1334444555555555555555555554442 222 23344455555555555555555555544 2332
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
...|+.+...|-..|+++.|...+.+.+. +.|.. ..++.|...|-..|+..+|+.-+++..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 23445555555555555555555555544 22332 3445555555555555555555555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-18 Score=156.87 Aligned_cols=336 Identities=11% Similarity=0.007 Sum_probs=267.5
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC-----------------------
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL----------------------- 133 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------------------- 133 (482)
..|+.++|+..++.+.. -.+-....|..+..++...|+.+.|...|.+..+.++.
T Consensus 128 erg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 46777888888877665 33345677777777777777777777777766655431
Q ss_pred -----------CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC
Q 038748 134 -----------SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK 201 (482)
Q Consensus 134 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 201 (482)
-..+|+.|...+-.+|+...|++-|++..+.. |+ ...|-.|-..|...+.+++|...|.....--+
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 12234444445566788888888888887743 43 45688899999999999999999988665456
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 281 (482)
-....+..+...|..+|+++.|++.|++.. .+.|.-..+|+.+..++-.. |++.+|.+.|.+..... +--....+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral---~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRAL---ELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHH---hcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHhC-CccHHHHH
Confidence 678899999999999999999999999997 55787778999999999999 99999999999988753 33466788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYNILFEFLV 359 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 359 (482)
.+...+...|.+++|..+|.... .+.|. ...++.|...|-+.|++++|+..|++... ++|+- ..|+.+-..|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999886 34554 56789999999999999999999999887 56664 57888889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLC 429 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 429 (482)
..|+.+.|.+.+.+.+..+.. -...++.|...|-..|++.+|+.-|+...+ ++||. ..|..++.++-
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 999999999999999885433 346788899999999999999999999987 56765 45655655543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-16 Score=153.85 Aligned_cols=403 Identities=11% Similarity=0.033 Sum_probs=271.9
Q ss_pred HHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCH-hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038748 67 QETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSP-YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145 (482)
Q Consensus 67 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 145 (482)
......++....|+.+.|++.|+...+ ..+-+. ..+ .++..++..|+.++|+..+++.......+......+...+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 334444555667777888888777665 222221 233 7777777778888888888877743334444444456677
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHHH
Confidence 7778888888888888776432 4555666677777778888887777776553 3344444444444444555555777
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHH------------------------------------------
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN------------------------------------------ 263 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~------------------------------------------ 263 (482)
.++++... .|++...+..+..++... |-...|++
T Consensus 191 ~~ekll~~---~P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 191 ASSEAVRL---APTSEEVLKNHLEILQRN-RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 77777643 566666655555555554 43333333
Q ss_pred ------HHHHHHH-cCCCCCH-HH----HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 264 ------SLKRMME-RGCNPGM-TF----FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 264 ------~~~~m~~-~~~~~~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
-++.+.. .+..|.. .. ..-.+-++...|++.++.+.|+.+. ..+.+.-..+-..+.++|...+++++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 2333222 1111221 11 2233556778899999999999994 66666556678889999999999999
Q ss_pred HHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------ccChh-hHHHHHHH
Q 038748 332 AMKLLDEMVYNGA-----FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------VLNHE-NCRAAVRV 392 (482)
Q Consensus 332 a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~li~~ 392 (482)
|+.+|..+..... .++......|..++...+++++|..+++.+.+... .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999876431 22334457788899999999999999999987422 12222 23345677
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVY 472 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 472 (482)
+...|+..+|++.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+......++...|++++|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHH
Confidence 888999999999999997753 4566788888899999999999999997776553 23456777888889999999999
Q ss_pred HHHHHHHhh
Q 038748 473 EELLKKCKA 481 (482)
Q Consensus 473 ~~~~~~m~~ 481 (482)
..+.+++.+
T Consensus 504 ~~~~~~l~~ 512 (822)
T PRK14574 504 ELLTDDVIS 512 (822)
T ss_pred HHHHHHHHh
Confidence 988877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-16 Score=160.14 Aligned_cols=375 Identities=11% Similarity=0.031 Sum_probs=286.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....++....-.+......|+.++|++++.+.......+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556777778888899999999999999999988666777789999999999999999999999998863 235667788
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+..++...|++++|...++++....+.+.. +..+..++...|+.++|+..++++.. ..|++...+..+...+...
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~- 163 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNN- 163 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC-
Confidence 889999999999999999998776677777 99999999999999999999999974 4888888888888888887
Q ss_pred CChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---hHHHHHHHHhhcccCCCCCHH-HH----
Q 038748 256 DGIYETVNSLKRMMERGCNPGM------TFFKLAFEECLT-----GQNL---RGAEFIWGAMVGRIGFRPDTH-MY---- 316 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~~~~~~~~~-~~---- 316 (482)
+..++|++.++.... .|+. ......+..... .+++ ++|.+.++.+.+.....|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999998876553 2221 111222222221 2234 678888888864423334321 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---ChhhHHHHHHH
Q 038748 317 NMMISLYCYSNETGAAMKLLDEMVYNGAF-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL---NHENCRAAVRV 392 (482)
Q Consensus 317 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 392 (482)
...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..+|+.+.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 11133456779999999999999987532 332 22225678999999999999999988654221 12345667778
Q ss_pred HhcCCChHHHHHHHHHHHHcCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 393 YMDSDDPYVAIKFWKYMIENHC-----------SDLS---ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSK 458 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 458 (482)
+.+.|++++|.++++.+.+... .|+. ..+..+...+...|++++|+++++++.... +-+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8999999999999999986521 1231 234566778889999999999999998765 345788899
Q ss_pred HHHHHHHhccHHHHHHHHHHHhh
Q 038748 459 LKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 459 l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+...+...|+.++|++.+++..+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-15 Score=149.23 Aligned_cols=368 Identities=12% Similarity=-0.022 Sum_probs=258.3
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+......+.+.|++++|+..|++.....+ +...|..+..+|...|++++|++.++...+... .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 44566778889999999999999887654 567888899999999999999999999988642 3566788899999999
Q ss_pred CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH--------------------------HhcCCC
Q 038748 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV--------------------------IEVGWD 237 (482)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------~~~~~~ 237 (482)
|++++|...|..+......+......++.-+........+...++.-. ......
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999887766432111121111111111111101111111111000 000011
Q ss_pred CCChhhHHHHHHH---HHccCCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 238 PDNVPAYDSYLIT---LLKGCDGIYETVNSLKRMMERG-CNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 238 p~~~~~~~~l~~~---~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
+.....+..+... .... +++++|++.|+...+.+ ..| ....+..+...+...|++++|...++..++ ..|+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~-~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~ 363 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKAD-ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPR 363 (615)
T ss_pred cccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC
Confidence 1111111111110 0122 67999999999998765 233 355677888888899999999999999873 2454
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 313 -THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 313 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++.++.... +...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHH
Confidence 56788888999999999999999999988632 35678888889999999999999999999986533 5667778889
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH
Q 038748 392 VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPF------ALSKLKQILIK 465 (482)
Q Consensus 392 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~l~~~~~~ 465 (482)
++.+.|++++|+..|+...+.. +.+...|+.+...+...|++++|++.|++..+.....+.. .+......+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998743 3345788889999999999999999999988764321111 12222223344
Q ss_pred hccHHHHHHHHHHHh
Q 038748 466 ARKEAVYEELLKKCK 480 (482)
Q Consensus 466 ~g~~~~a~~~~~~m~ 480 (482)
.|++++|.+++++..
T Consensus 521 ~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 521 KQDFIEAENLCEKAL 535 (615)
T ss_pred hhhHHHHHHHHHHHH
Confidence 699999999998864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-14 Score=125.34 Aligned_cols=401 Identities=11% Similarity=0.090 Sum_probs=249.9
Q ss_pred HHHHHhhCCCCcc---HHHHhhhcCCCCCHHHHHHHHH-hhcCC-c---hhHhHHhhhhhcCC-----------------
Q 038748 41 TLCEIIANTPSPT---VEDVLDKTLIRVSQETVEQVLK-FSYSH-P---GPAVKFFRWSAYQL----------------- 95 (482)
Q Consensus 41 ~~~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~ll~-~~~~~-~---~~a~~~~~~~~~~~----------------- 95 (482)
.+.+.+.+..-.| +...|++.|.++++..-..+++ .+..+ . -.-.+-|-.+.+..
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~ 200 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLF 200 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHH
Confidence 4444554443333 7888999999999998888888 33211 1 11112222222110
Q ss_pred -CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 96 -NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 96 -~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
-.+.+..+|..+|.++|+--..+.|.+++++-..... ....+||.+|.+-.-.. ..++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 1234667888888888888888888888888776654 67788888877654332 26778888888888888888
Q ss_pred HHHHHHHHhcCChHhHH----HHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhHHh------cCCCCCCh
Q 038748 174 NSLLSAICRDGKTIDAW----QFLRVVDG-RIKPDNDTYAILLEGWEKERDVAN-AKKTFGEMVIE------VGWDPDNV 241 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~----~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~------~~~~p~~~ 241 (482)
|+++.+.++.|+++.|. +++.+|++ |+.|...+|..+|..+++.++..+ |..++.++... .-+.|++.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 88888888888776654 45556665 788888888888888887777644 44455544432 12345555
Q ss_pred hhHHHHHHHHHccCCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERG----CNPG---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
..|...|..+... .+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|+ -.-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV-P~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV-PSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cceecCCch
Confidence 5666677777766 77777777665544321 2232 2335566677777778888888888886 445567777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CH--------HH-----HHHHH-------HH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR-KL--------WE-----ASGLF-------NE 373 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~--------~~-----a~~~~-------~~ 373 (482)
+...++++....|+++-.-+++.++...|-.-....-.-++..+++.+ +. .. |..++ .+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 777778877778888888888888777664433333333333444333 11 00 11111 12
Q ss_pred HHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHH---HHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGN---LLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
+.. ........+.+.-.+.+.|..++|.+++..+.+++- .|-....| -++..-.+.++...|..+++-|...+.
T Consensus 515 ~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 222 223344556666667778888888888887754432 23333444 444555566777778887777766554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-13 Score=137.01 Aligned_cols=365 Identities=12% Similarity=0.005 Sum_probs=271.3
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+.++|+..++.... ...........+...+...|++++|+++|+++.+..+.+...+..++..+...++.++|+
T Consensus 79 ~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 346888999999887653 222223333333567778899999999999999998878888888888889999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF-------- 227 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------- 227 (482)
+.++.+... .|+...+..++..+...++..+|++.++++....+.+...+..++.+..+.|-...|.++.
T Consensus 157 ~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~ 234 (822)
T PRK14574 157 KQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS 234 (822)
T ss_pred HHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence 999998875 4565556444444444566666888888877655666777777766666655544444433
Q ss_pred ----------------------------------------HHhHHhcCCCCCChh----hHHHHHHHHHccCCChHHHHH
Q 038748 228 ----------------------------------------GEMVIEVGWDPDNVP----AYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 228 ----------------------------------------~~~~~~~~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~ 263 (482)
+.+....+-.|.... +..-.+.++... ++..++++
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~ 313 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIK 313 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence 333322222342211 122345666677 99999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG----FRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
.|+.|...+.+....+-..+..+|...+++++|+.++..+....+ ..++......|.-+|...+++++|..+++.+
T Consensus 314 ~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 314 EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999998776778889999999999999999999999864432 2334555678999999999999999999999
Q ss_pred HHCCC-------------CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHH
Q 038748 340 VYNGA-------------FPDIQ-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 340 ~~~g~-------------~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
.+.-. .||-. .+..++..+...|++.+|++.++++....+. |......+...+...|.+..|++.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88311 11222 2344566788899999999999999887654 888899999999999999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 406 WKYMIENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 406 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
++..... .|+ ..+....+.++...|++.+|..+.+...+..
T Consensus 473 ~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 473 LKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9777764 344 4667778888889999999999999887664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=137.71 Aligned_cols=392 Identities=13% Similarity=0.098 Sum_probs=274.3
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
....++..+...-. -...|+.+.+.|...|.-.|+++.++.+.+.+..... .-...|..+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34566666665555 5667889999999999999999999999999887763 345668899999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhHH
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER----DVANAKKTFGEMVI 232 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~ 232 (482)
.|.+..+....-.+..+-.|..++.+.|+++.+...|+.+-...+.+..+..++...|...+ ..+.|..++.+...
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 99888775422223445667899999999999999999988777888888888888888775 45666666666653
Q ss_pred hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM----ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI- 307 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 307 (482)
..|++..+|-.+...+.. ++...++..|.... ..+..+.....|.+.......|++..|...|.......
T Consensus 409 ---~~~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 409 ---QTPVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ---cccccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 356677777766666655 44555576666543 44555777788888888888888888888888774220
Q ss_pred -CCCCCH------HHHHHHHHHHHhcCC----------------------------------HHHHHHHHHHHHHCC-CC
Q 038748 308 -GFRPDT------HMYNMMISLYCYSNE----------------------------------TGAAMKLLDEMVYNG-AF 345 (482)
Q Consensus 308 -~~~~~~------~~~~~li~~~~~~~~----------------------------------~~~a~~~~~~m~~~g-~~ 345 (482)
...+|. .+-..+...+-..++ ..+|...+....+.. ..
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 011121 111112222222233 333444443332211 11
Q ss_pred C----------------------------------CHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCC
Q 038748 346 P----------------------------------DIQTYNILFEFLVK------------GRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 346 p----------------------------------~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~ 379 (482)
| |....-.|...|.+ .+..++|+++|.+.++..+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 2 22222222222211 2346678888888888765
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHH
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-EKGIQVTPFALSK 458 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ 458 (482)
. |...-|.+.-.++..|++..|..+|.++.+... -+..+|-.+.++|..+|+|-.|+++|+... ..+-..+..+...
T Consensus 644 k-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 K-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred c-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4 677777888888999999999999999987643 344678889999999999999999999874 4455667889999
Q ss_pred HHHHHHHhccHHHHHHHHHHHh
Q 038748 459 LKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 459 l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
|.+++.+.|++.+|.+.+.+.+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999988776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-13 Score=119.83 Aligned_cols=402 Identities=15% Similarity=0.138 Sum_probs=285.0
Q ss_pred HHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh---CCCcHHHHHHHHHHHhcC-------------
Q 038748 69 TVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK---NCLFDAMWDAIKSMKKEN------------- 131 (482)
Q Consensus 69 ~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~------------- 131 (482)
+=+.+++ ..++...++.-+++.|... ++..+...--.|+..-+- ++-+-.-++-|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4455666 6678889999999998874 777777666555544332 222212223333333221
Q ss_pred -------CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCC
Q 038748 132 -------VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPD 203 (482)
Q Consensus 132 -------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~ 203 (482)
+.+..+|.++|.++++-...+.|.+++++......+.+..+||.+|.+-.-.-+ .++..+|.. ...||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 236788999999999999999999999999988788999999999987654333 567777654 78999
Q ss_pred HHHHHHHHHHHHhcCCHHHH----HHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-HHHHHHHHHHHHc--C--CC
Q 038748 204 NDTYAILLEGWEKERDVANA----KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKRMMER--G--CN 274 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~m~~~--~--~~ 274 (482)
..|+|+++.+..+.|+++.| .+++.+|++ .|+.| +..+|..+|..+.+. ++. ..+..++.++... | ++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVeP-sLsSyh~iik~f~re-~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEP-SLSSYHLIIKNFKRE-SDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCc-chhhHHHHHHHhccc-CCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999988765 456677775 69999 688999999999998 555 4455666665542 2 22
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 275 ----PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG---FRPD---THMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 275 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
-|...|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+....|.....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2566788889999999999999988776631111 2232 23466677888888899999999999998888
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC-Ch--------HH-----HH-------
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD-DP--------YV-----AI------- 403 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~------- 403 (482)
-|+..+...++++..-.|.++-.-++|..+...|-..+...-..++..+++.. .. .. |.
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988774444444444444444433 11 11 11
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 404 KFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI----QVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..-.+|.+..++| ...+.++-.+.+.|+.++|.++|..+.+.+- .|......-+++.-.+.+....|..+++-|
T Consensus 510 ~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1112333334433 4667777788999999999999999865542 233334446666777777888888877765
Q ss_pred h
Q 038748 480 K 480 (482)
Q Consensus 480 ~ 480 (482)
.
T Consensus 588 ~ 588 (625)
T KOG4422|consen 588 S 588 (625)
T ss_pred H
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-13 Score=135.91 Aligned_cols=230 Identities=10% Similarity=-0.014 Sum_probs=173.5
Q ss_pred ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHH
Q 038748 240 NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319 (482)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 319 (482)
+...|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...|+.+. .. .|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~--~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD--TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh--CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHH
Confidence 44445555544443 66777888777766543 555544445555678999999999999875 22 4555556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCCh
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 399 (482)
..++.+.|+.++|...++...+... .+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 7788899999999999999887642 22233333344455669999999999999875 45677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
++|...++...+.. +.+...++.+..++...|++++|+..+++..+... -+...+..+..++...|++++|+..+++.
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998854 23446778888889999999999999999987753 46678889999999999999999999887
Q ss_pred hh
Q 038748 480 KA 481 (482)
Q Consensus 480 ~~ 481 (482)
.+
T Consensus 704 l~ 705 (987)
T PRK09782 704 ID 705 (987)
T ss_pred Hh
Confidence 53
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-13 Score=135.12 Aligned_cols=154 Identities=8% Similarity=-0.069 Sum_probs=97.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
..+...|++++|...|+++... .|+...+..+...+.+.|+.++|..+++...+.... +...+..+.......|+++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHH
Confidence 3334566677777666665443 233334445555666677777777777776664321 2222223333344557777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+|...+++..+. .|+...|..+..++.+.|++++|+..+++...... .+...+..+..++...|++++|++.+++..
T Consensus 594 eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777763 35666777777777788888888888888776652 345666677777788888888887777654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-12 Score=123.05 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=231.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.|++++|.+++.++.+..+.....|..|...|-..|+.+++...+-.....+. -|...|..+.....+.|+++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 47777777777777777766667777777777777777777766655554432 25566777777777777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHHHccCCChHHHHHHHHHHH
Q 038748 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
.+..+-.+++...+---+..|.+.|+...|..-|.++... ..|.+..-+.. .+..+... ++-+.|.+.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITH-NERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 7765555666666666666777777777777777777532 11222222222 23444444 55566666666655
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc--------------------------ccCCCCCHHHHHHHHHH
Q 038748 270 ER-GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVG--------------------------RIGFRPDTHMYNMMISL 322 (482)
Q Consensus 270 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~li~~ 322 (482)
.. +-..+...++.++..+.+...++.+......+.. ..++.++..++ -++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 42 2223445566666666777777766666655531 01112233331 12223
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 323 YCYSNETGAAMKLLDEMVYNG--AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
+...+..+....+.....+.. +.-+...|.-+..++...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 334444444445555555554 333456778888889999999999999998887765556778888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHhccHHH
Q 038748 401 VAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA--------EKGIQVTPFALSKLKQILIKARKEAV 471 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (482)
.|.+.|+..+.. .|+. ..--.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999888874 3443 444556667788899999999888853 23455666667777778888888887
Q ss_pred HHHHHHHHh
Q 038748 472 YEELLKKCK 480 (482)
Q Consensus 472 a~~~~~~m~ 480 (482)
.+.+...|.
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 766655553
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-13 Score=123.11 Aligned_cols=284 Identities=10% Similarity=0.014 Sum_probs=200.4
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA--ILLEGWEKERDVANAKK 225 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 225 (482)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 488888887777665542111 222333344457788888888888887542 34433222 33667788888888888
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM-------TFFKLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~ 298 (482)
.++++. ...|++......+...+... |++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 175 ~l~~~~---~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 175 GVDKLL---EVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHH---hcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888886 34677788888888888888 8888888888888887654322 123333444444555666777
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 299 IWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 251 WWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 77776422 2456777888888888999999999998888774 3444222 3344455688888888888888765
Q ss_pred CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 379 NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 379 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
.. |...+..+...|.+.+++++|.+.|+...+ ..|+...|..+...+.+.|+.++|..++++...
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 666777888888899999999999988887 458888888888888899999999888887643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-13 Score=124.36 Aligned_cols=286 Identities=8% Similarity=-0.017 Sum_probs=216.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCChHhHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALN--SLLSAICRDGKTIDAWQ 191 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~ 191 (482)
.|+++.|.+.+....+........|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766653222233444455558889999999999999875 35543332 33678889999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChh-----hHHHHHHHHHccCCChHHHHHHHH
Q 038748 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP-----AYDSYLITLLKGCDGIYETVNSLK 266 (482)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~~a~~~~~ 266 (482)
.++.+.+..+-+...+..+...|.+.|++++|.+++..+.+.....|+... +|..++...... .+.+...++++
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~-~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD-QGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999988777888999999999999999999999999999865333232111 233334444444 55566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 267 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+.+. .+.+......+...+...|+.++|.+++.+..+ ..++.... ++.+....++.+++.+..+...+... -
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 65432 345677888899999999999999999999873 25555322 34444566999999999999888633 2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
|...+..+...|.+.|++++|.+.|+...+. .|+...|..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566778889999999999999999999884 68888999999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-12 Score=122.16 Aligned_cols=383 Identities=12% Similarity=0.051 Sum_probs=239.7
Q ss_pred HHHHHH--hhcCCchhHhHHhhhhhcCCCCCCC-HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038748 70 VEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHS-PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146 (482)
Q Consensus 70 ~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (482)
+-.+-+ +..|+++.|...|....+ ...-+ +..+--+...+.+.|+++.+...|+.+....+.+..+...|...|+
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 334444 668999999999987665 22222 4556677889999999999999999998888777777777777776
Q ss_pred hhC----ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhc
Q 038748 147 VAD----RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD-----GRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 147 ~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ 217 (482)
..+ ..+.|..++....+.- ..|...|-.+...+-...-+.. +.+|.... .+.++-+...|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 664 4455555555554432 2344455544444443322222 43333221 12334555555555555555
Q ss_pred CCHHHHHHHHHHhHHhc--CC---------------------------------------CCCChhhHHHHHHHHHccCC
Q 038748 218 RDVANAKKTFGEMVIEV--GW---------------------------------------DPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~--~~---------------------------------------~p~~~~~~~~l~~~~~~~~~ 256 (482)
|+++.|...|....... .. .|.-+..|-.+. ++.+..+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ma~~k~ 544 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-CMARDKN 544 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-HHHHhcc
Confidence 55555555555544320 01 222122222222 1111114
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-----------
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----------- 325 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------- 325 (482)
...+|...+....... ..+...++.+...+.+...+..|.+-|....++....+|..+.-+|...|..
T Consensus 545 ~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred CcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 4444444444444321 1223333334445555556666666555444333334566555555554432
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 326 -SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 326 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
.+..++|+++|.+..+...+ |...-|-+.-.++..|++.+|..+|....+.... ...+|..+.++|..+|++..|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHH
Confidence 24578899999998886433 6777777888889999999999999999987542 55678899999999999999999
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 405 FWKYMIEN-HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 405 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
+|+...+. .-..+....+.|..++.+.|++.+|.+.+.......+.-....|+..+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99998754 334566788999999999999999999988887665544445555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-12 Score=118.76 Aligned_cols=361 Identities=10% Similarity=0.019 Sum_probs=268.4
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+.+.|.+++..+.+ ..+.+...|.+|...|-..|+.+++...+--.-..++.+...|..+.....+.|++++|.
T Consensus 150 farg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 457999999999999998 566788999999999999999999999888888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN-D----TYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
-.|.+.++... ++...+---...|-+.|+...|...|.++-.-.+|.. . .--.+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999753 3555555567788899999999999998765444332 2 2234566677788889999998888
Q ss_pred HHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC---------------------------CCHHHHHHH
Q 038748 231 VIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN---------------------------PGMTFFKLA 283 (482)
Q Consensus 231 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~l 283 (482)
..+ +..-.+...++.++..+++. ..++.+......+...... ++...+ .+
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 763 23333566788999999999 9999999988888762222 222221 12
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIG--FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 361 (482)
.-++......+....+..... ... +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 223333344444444444443 334 33456788899999999999999999999998875555677899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH--------cCCCCChhhHHHHHHHHHhcCC
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE--------NHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~g~ 433 (482)
|..++|.+.|+..+..... +...-..|-..+-+.|+.++|.+++..+.. .+..|+...--.....+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999886432 444555677788899999999999988642 2344444444445566677787
Q ss_pred hhHHHHHHHHH
Q 038748 434 LPEAVKYAKGM 444 (482)
Q Consensus 434 ~~~A~~~~~~m 444 (482)
.++=+.+...|
T Consensus 542 ~E~fi~t~~~L 552 (895)
T KOG2076|consen 542 REEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHH
Confidence 77644443333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=134.32 Aligned_cols=261 Identities=13% Similarity=0.068 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIEVGW-DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC 287 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 287 (482)
.+...+.+.|++++|+++++.... .. .|++...|..+....... ++++.|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ--KIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKA-NPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--ccccccccccccccccccccc-ccccccccccccccccccc-ccccccccccc-
Confidence 446667777777777777754432 22 354554555545455555 7788888888877765432 44556666665
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHH
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
...+++++|.+++....++ .++...+..++..+...++++++..+++.+.... ...+...|..+...+.+.|+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 6778888888887766422 3455666777778888888888888888876543 23466677777788888888888
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
|...+++.++..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++...
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 88888888875433 46677788888888888888888888877653 45556777888888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 447 KGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 447 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.. +.|+.+...+..++...|+.++|.++.++.-
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT----------------
T ss_pred cc-ccccccccccccccccccccccccccccccc
Confidence 54 3477888888888888888888888776643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-12 Score=120.16 Aligned_cols=298 Identities=10% Similarity=-0.041 Sum_probs=184.5
Q ss_pred HHHHHHHH--HhhCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCH--HHHHHHHH
Q 038748 138 FASVFSSY--VVADRVKDAITTFDVMEQYGCKHDV-FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDN--DTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~ 212 (482)
+..+.++. ...|+++.|.+.+....+.. |+. ..+-....++.+.|+.+.|.+.++...+.. |+. ........
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHH
Confidence 33344443 34588888888887776643 433 233344566777788888888888865432 332 33444577
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEEC---LT 289 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~ 289 (482)
.+...|+++.|...++.+.+. .|++..+...+...+... |++++|.+.+..+.+.+..++......-..++ ..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~---~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEM---APRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 778888888888888888743 677777888888888888 88888888888888876443322211111111 22
Q ss_pred cCChhHHHHHHHHhhccc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCH
Q 038748 290 GQNLRGAEFIWGAMVGRI--GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT---YNILFEFLVKGRKL 364 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~ 364 (482)
.+..+.+.+.+..+.+.. ....+...+..+...+...|+.++|.+++++..+. .||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCCh
Confidence 222222222333332111 01236777777888888888888888888888775 233331 11111222334666
Q ss_pred HHHHHHHHHHHhCCCccCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 365 WEASGLFNEMVKNENVLNH--ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
+.+.+.++...+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776664322 33 44556777777778888888877754333345777667777777777788777777777
Q ss_pred HHH
Q 038748 443 GMA 445 (482)
Q Consensus 443 ~m~ 445 (482)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-12 Score=120.84 Aligned_cols=300 Identities=10% Similarity=0.025 Sum_probs=214.7
Q ss_pred hHHHHHHHHh--hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 103 AWNLVVDLLG--KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 103 ~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
.+..+..++. ..|+++.|.+.+....+..+.....+-....+..+.|+++.|.+.+....+....+.....-.....+
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 4444444443 47999999999988877655444555666778888899999999999987753222223344457888
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHHHccCC
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITLLKGCD 256 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~~~~~~ 256 (482)
...|+++.|...++.+.+..+.+..++..+...+...|++++|.+.+..+.+. +..+ ...+.. ........ +
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~--~~~~~~l~~~a~~~~l~~-~ 239 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFD--DEEFADLEQKAEIGLLDE-A 239 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCC--HHHHHHHHHHHHHHHHHH-H
Confidence 88999999999999988776778889999999999999999999999999864 3322 222211 11111222 2
Q ss_pred ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH---HHHHHHHHHhcCCHH
Q 038748 257 GIYETVNSLKRMMERGC---NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM---YNMMISLYCYSNETG 330 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~ 330 (482)
..++..+.+..+.+... +.+...+..+...+...|+.++|.+++++..++ .||... ...........++.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChH
Confidence 33333445555544321 137788888999999999999999999999743 344331 122222234457888
Q ss_pred HHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDI---QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
.+.+.++...+. .|+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|+
T Consensus 317 ~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 317 KLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899998887765 3443 45567888899999999999999965444457888889999999999999999999999
Q ss_pred HHHH
Q 038748 408 YMIE 411 (482)
Q Consensus 408 ~m~~ 411 (482)
+...
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 8653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=133.77 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=72.9
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+++.|+++++........+.|+..|..+.......++++.|++.++++...+..+...+..++.. ...+++++|.+
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 34566666666643222111233344444444455555666666666666665554444455555555 45666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV 234 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (482)
+++..-+.. ++...+..++..+.+.++++++..+++.+.. ..+.+...|..+...+.+.|+.++|++.+++..+.
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 175 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL- 175 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 665544332 3444555555666666666666666665432 23445556666666666666666666666666533
Q ss_pred CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
.|++......++..++.. |+.+++.++++...+.. +.|...+..+..++...|+.++|..+|+...+.. +.|..
T Consensus 176 --~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~ 249 (280)
T PF13429_consen 176 --DPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPL 249 (280)
T ss_dssp ---TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HH
T ss_pred --CCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccc
Confidence 555555566666666655 66666555555555442 2333444555555556666666666666554211 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
+...+..++...|+.++|..+..+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5555555566666666665555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=113.66 Aligned_cols=376 Identities=13% Similarity=0.047 Sum_probs=237.4
Q ss_pred chhHhHHhhhhhcC-CCCCCC--HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 81 PGPAVKFFRWSAYQ-LNDKHS--PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 81 ~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
+..|+++++....+ ++...+ ....+.+--.+.+.|.++.|+.-|+...+..+.-...||..| ++..-|+-++..+.
T Consensus 253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEA 331 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHH
Confidence 46788888876664 222222 234555555677889999999999998887643344455544 44456888888888
Q ss_pred HHHHHhcCCCCC------------HhhHHHHHH-----HHHhcC--ChHhHHHHHHHhhC-CCCCCHHH-----------
Q 038748 158 FDVMEQYGCKHD------------VFALNSLLS-----AICRDG--KTIDAWQFLRVVDG-RIKPDNDT----------- 206 (482)
Q Consensus 158 ~~~~~~~~~~~~------------~~~~~~ll~-----~~~~~g--~~~~a~~~~~~~~~-~~~~~~~~----------- 206 (482)
|.+|+.....|| ....|..+. -.-+.+ +.++++-.--.+.. -+.|+-..
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~ 411 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKA 411 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHH
Confidence 998876432222 222222221 111111 11222111111111 12222110
Q ss_pred --H--------HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH-------------------------
Q 038748 207 --Y--------AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL------------------------- 251 (482)
Q Consensus 207 --~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~------------------------- 251 (482)
+ -.-.--|.+.|+++.|.+++.-+.++..-.. +..+-|.-+..+
T Consensus 412 s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~-saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 412 SQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA-SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh-HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 0 0112347788888888888877654311111 111111111111
Q ss_pred ----------HccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHH
Q 038748 252 ----------LKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMI 320 (482)
Q Consensus 252 ----------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li 320 (482)
+.. |++++|.+.|++.....-.-....|+. .-.+-..|++++|++.|-.+. ++ .-+..+...+.
T Consensus 491 ~a~~nkgn~~f~n-gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh---~il~nn~evl~qia 565 (840)
T KOG2003|consen 491 AALTNKGNIAFAN-GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIA 565 (840)
T ss_pred HHhhcCCceeeec-CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHH
Confidence 222 788888888888876543323333333 224566788999988887763 22 33566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
..|-...+...|++++.+.... ++-|+.....|...|-+.|+-..|.+++-+--. -++.+..+..-|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHH
Confidence 8888888888999888776554 455778888888999999999888887655433 24557777777888888888899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAG-LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+++.+|+...- +.|+..-|..++.. +.+.|++++|+++++...++ ++-|...+..|++.+...|.
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999988765 78999999998855 45789999999999998665 55678888888888777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-11 Score=104.33 Aligned_cols=290 Identities=10% Similarity=0.002 Sum_probs=222.7
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
.|+|.+|++...+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 488888888888877766443 344555566777788888888888886652 355666677777888888888888888
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCChhHHHHH
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-------MTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
++++. +..|.++........+|... |++..+..++..|.+.|.--+ ..+|..+++-+...+..+.-...
T Consensus 176 v~~ll---~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 176 VDQLL---EMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHH---HhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 88876 34666677888888888888 888888888888888775544 35677777777777777777788
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 379 (482)
|+....+ ..-++..-.+++.-+.++|+.++|.++..+..+++..|. -...-.+.+.++.+.-.+..++-.+...
T Consensus 252 W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 252 WKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 8887533 344566667788889999999999999999999877666 2223345677888888887777666533
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
. ++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+..+|.+.|+.++|.+++++....-.+|
T Consensus 326 ~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 326 E-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 3 557888999999999999999999997776 56899999999999999999999999999876443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-11 Score=104.10 Aligned_cols=361 Identities=13% Similarity=0.006 Sum_probs=241.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH-HHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL-NSL 176 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 176 (482)
..|...+-...-.+-+.|....|.+.|......-+-...+|..|...+.. +++.......+..-+.... -.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence 34444444444555567778888888888777766666666666554432 2222222221111011111 123
Q ss_pred HHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 177 LSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
..++-.....+++.+-.+.... |++.+...-+....+.....|+++|+.+|+++.+.....-++..+|..++-..-..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~- 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-
Confidence 3455555667777665555443 66666666666667777888999999999999865334445666776655443222
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMK 334 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~ 334 (482)
..+..+.+-...--+--+.|.-.+.+.|.-.++.++|...|++.+ .+.| ....|+.+-.-|....+...|.+
T Consensus 313 ----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 ----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred ----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 112222211111011223456677788888899999999999987 2344 35678888888999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
-++...+-.. -|-..|..+.++|.-.+...=|+-+|++..+..+. |...|.+|..+|.+.++.++|++.|+.....|-
T Consensus 386 sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999988643 37788999999999999999999999999886543 788899999999999999999999999887652
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHhccHHHHHHHH
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAE----KGIQVTP--FALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
.+...+..|.+.|-+.++.++|...|++..+ .|...+. ....-|..-+.+.+++++|....
T Consensus 464 -te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 -TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3557888999999999999999988887654 2333221 23333556677888887776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=104.05 Aligned_cols=286 Identities=12% Similarity=0.048 Sum_probs=154.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH------hhHHHHHHHHHhcCChH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV------FALNSLLSAICRDGKTI 187 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~ 187 (482)
+++.++|+++|-+|.+.++.+.++.-+|.+.|.+.|..+.|+.+.+.+.++ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 467888888888888877777777888888888888888888888888774 332 23344556667777788
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
.|+.+|..+.....--......|+..|....+|++|+++-+++.+- +-.+.+ ...|-.+...+... .+.+.|..+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~-~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALAS-SDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 8888887765433334556667777777777777777777766532 222211 11222333333333 444444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
+.+..+.. |+ .+..--.+-+.+...|++++|.+.++...+.+.
T Consensus 203 l~kAlqa~--~~-----------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 203 LKKALQAD--KK-----------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHhhC--cc-----------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 44444322 11 111222233344455555555555555555433
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.--..+...|..+|.+.|+.++...++..+.+....++ .-..+.+........+.|..++.+-... .|+...+..+
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl 321 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRL 321 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHH
Confidence 33334445555555555555555555555554432222 2222333333333344444444433332 3555555555
Q ss_pred HHHHH---hcCChhHHHHHHHHHH
Q 038748 425 VAGLC---DMHMLPEAVKYAKGMA 445 (482)
Q Consensus 425 i~~~~---~~g~~~~A~~~~~~m~ 445 (482)
|..-. ..|...+-+.+++.|.
T Consensus 322 ~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 322 MDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHhhhccccccchhhhHHHHHHHH
Confidence 54432 1233444444445443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-10 Score=101.35 Aligned_cols=394 Identities=8% Similarity=-0.022 Sum_probs=276.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
..+++.+.|..+|+.+.. ....+...|-..+..=.+++.+..|..++++....-+--...|...+..=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 346777899999998887 667788889999999999999999999999988875544455666666666779999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
++|+...+ ..|+...|++.|+.=.+...++.|..+|+...- +.|++.+|--....--+.|+...|..+|+......|
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999877 479999999999999999999999999999653 359999999998888899999999999888775433
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-------------------------------------------C
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-------------------------------------------G 272 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-------------------------------------------~ 272 (482)
-.-.+...+.++...-... ..++.|.-+|+-.++. .
T Consensus 239 ~d~~~e~lfvaFA~fEe~q-kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQ-KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 3221122222222211122 3333333333322211 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHHHHHC
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH-------MYNMMISLY---CYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~---~~~~~~~~a~~~~~~m~~~ 342 (482)
.+-|-.+|--.+..--..|+.+...++|+..+ .+++|-.. +|--+--++ ....+++.+.++|+...+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 12233444445555556788888888888875 34455211 121111111 2356778888888877773
Q ss_pred CCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh
Q 038748 343 GAFPDIQTYNILFEFL----VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS 418 (482)
Q Consensus 343 g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 418 (482)
++-...||..+=-.| .+..++..|.+++...+. .-|-..+|...|..-.+.++++.+.++++..++.+ +-|.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 333445554443333 456788888888887754 56677888888888888899999999999988854 2345
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+|.-....=...|+.+.|..+|+-.+.... ......|.+.|..=...|.++.|..+++++.+
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 7787777777788999999999988876542 23345677777777888999999999988765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-09 Score=98.50 Aligned_cols=385 Identities=11% Similarity=0.039 Sum_probs=221.3
Q ss_pred chhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHH----HhcCC-CCHHHHHHHHHHHHhhCChhhHH
Q 038748 81 PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSM----KKENV-LSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
++.|.+++..+.. ..+.+...|-+-...=-.+|+.+...+++++- ...|+ .+...|-.=...|-..|.+-.+.
T Consensus 422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 4556666665554 55666677766666666677777766666543 22333 34444444444444444444444
Q ss_pred HHHHHHHhcCCCC------------------------------------CHhhHHHHHHHHHhcCChHhHHHHHHHhhCC
Q 038748 156 TTFDVMEQYGCKH------------------------------------DVFALNSLLSAICRDGKTIDAWQFLRVVDGR 199 (482)
Q Consensus 156 ~~~~~~~~~~~~~------------------------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 199 (482)
.+....+..|+.- +...|......--..|..++...+|++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 4444444433321 2333333333333344455555555554444
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 279 (482)
++.....|.....-+-..|++..|..++.+... ..|.+...|-.-+..-..+ ..++.|..+|.+... ..|+...
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~---~~pnseeiwlaavKle~en-~e~eraR~llakar~--~sgTeRv 653 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFEN-DELERARDLLAKARS--ISGTERV 653 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc--cCCcchh
Confidence 444444555555555555666666666655542 2454555555555555555 666666666665554 3355555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYNILFEF 357 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 357 (482)
|.--+..-.-.++.++|.+++++.++. -|+ ...|-.+-..+-+.++++.|.+.|..-.+. .|+. ..|-.+...
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakl 728 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKL 728 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHH
Confidence 555555555566666666666666522 232 334555555566666666666665544332 3443 334444455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC---------------------
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--------------------- 416 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------------------- 416 (482)
-.+.|.+-+|..+++...-.++. +...|...|+.-.+.|+.+.|..+..+..+. ++.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 55677888888888887776655 7778888888888888888888877766542 111
Q ss_pred ---------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 417 ---------LSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 417 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|.+..-.+...|....++++|.+.|.+....+. -+..+|..+...+.+.|..+.-.++++++..
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 222223334445566677778888887776652 2456777777777888877777777776643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-10 Score=98.80 Aligned_cols=356 Identities=10% Similarity=0.080 Sum_probs=243.6
Q ss_pred cCCchhHhHHhh-hhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFR-WSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.|+...|.++|. || ...|+..+|++.|..=.+-+..+.|..+|++..--. |....|-....-=-++|++..|..
T Consensus 154 LgNi~gaRqiferW~----~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM----EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHH
Confidence 466777777777 55 456778888888888778788888888887776544 666667776666677788888888
Q ss_pred HHHHHHhc-CC-CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH------
Q 038748 157 TFDVMEQY-GC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD--NDTYAILLEGWEKERDVANAKKT------ 226 (482)
Q Consensus 157 ~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 226 (482)
+|+...+. |- ..+...+++....=.++..++.|.-+|+-....++.+ ...|......--+-|+....++.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 87776653 21 0112223333333335566777777777655545544 55566665555566665554443
Q ss_pred --HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH--HHHHH----HHHH-H---HhcCChh
Q 038748 227 --FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM--TFFKL----AFEE-C---LTGQNLR 294 (482)
Q Consensus 227 --~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~----li~~-~---~~~g~~~ 294 (482)
++.+.+ -.|-|..+|-..+...-.. |+.+...++|+..+.. ++|-. ..|.. .|+. | ....+++
T Consensus 309 ~qYE~~v~---~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 309 FQYEKEVS---KNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hHHHHHHH---hCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 233332 3566777888888877777 9999999999998875 44421 11111 1222 1 2468888
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLY----CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
.+.++++..++ -++-...||.-+--.| .++.++..|.+++.... |..|-..+|..-|..-.+.++++.+..+
T Consensus 384 rtr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 384 RTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 99999988872 2333445554443333 46788899999888766 5678888999888888899999999999
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH-CSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+++.++.++. +..+|......-...|+.+.|..+|.-.+... +......|-..|.-=...|.++.|..+++++.+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999997765 77788888888888899999999999888642 22223566666766678899999999999987654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-12 Score=117.81 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=189.3
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR---IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
+.++|+..|+...+. +.-+..+...+..+|...+++++|+.+|+.++.. .--+..+|.+.+--+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 566777777775443 2223355566777788888888888888877652 23466777777665432 222222
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
+.+-. ....|+++.+|-++.++|.-. ++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|...+
T Consensus 409 Laq~L--i~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al- 482 (638)
T KOG1126|consen 409 LAQDL--IDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL- 482 (638)
T ss_pred HHHHH--HhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-
Confidence 22221 133555667888877777777 8888888888877764 34 56777777777777788888888887776
Q ss_pred ccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 306 RIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 306 ~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
++.|. -..|..|...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|++++++....... |+.
T Consensus 483 --~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 483 --GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred --cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 22222 223444566777888888888888887775433 4556666667777788888888888887776544 333
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP 453 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (482)
.--.-+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.+.++..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 333445556667888888888888877 44554 56666677788888888888888777766544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-10 Score=101.44 Aligned_cols=335 Identities=6% Similarity=-0.068 Sum_probs=252.0
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
.+|..-.+.|.+.+.++-|..+|....+-.+-....|......=-..|..+....+|++....- +-....|-....-+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4566666677777777777777777777766666777777766666788888888888887753 234455666667777
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
..|+...|..++...-...+.+..+|...+..-.....++.|..+|.+... ..| +...|.--+..-.-. +..++|
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~---~sg-TeRv~mKs~~~er~l-d~~eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS---ISG-TERVWMKSANLERYL-DNVEEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCC-cchhhHHHhHHHHHh-hhHHHH
Confidence 889999999998886655566888999999999999999999999988864 344 344554444444445 889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
++++++..+. ++.-...|..+.+.+-+.++++.|...|..-. ..++-.+..|-.|...=-+.|.+-+|..+++...-
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999888774 22234567777788888888998888887654 23444566787787777888889999999988887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------------------CccChhhHHHHHHH
Q 038748 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN----E-------------------------NVLNHENCRAAVRV 392 (482)
Q Consensus 342 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~li~~ 392 (482)
++.+ +...|-..|+.-.+.|+.+.|..++.+.++. | +.-|++....+...
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 7554 7788888888888999988888777666543 1 23355666677777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+....++++|.+.|....+.+ ||. .+|.-+...+.+.|.-++-.+++.......
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 888889999999999998854 444 789889999999999999999998886553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-12 Score=117.27 Aligned_cols=288 Identities=11% Similarity=0.069 Sum_probs=219.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG--CKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
-+..+|..+|..+.....-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356789999999766655555777888999999999999999999998752 12266778877654422 122222
Q ss_pred H-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 193 L-RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
+ +.+....+-.+.+|.++.++|.-+++.+.|++.|++.. .++|....+|+.+..-+... ..+|.|...|+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~-ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhh-HHHHhHHHHHHhhhcC
Confidence 2 33444456778899999999999999999999999986 67887788898888888888 9999999999987653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 038748 272 GCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT 350 (482)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 350 (482)
. +-+-..|.-+...|.+.++++.|+-.|+..+ .+.| +.+....+...+.+.|+.++|+.+|++......+ |...
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 1 1122344456678899999999999999886 3445 5666777778888999999999999999876544 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 416 (482)
--.....+...++.++|+..++++.+.-+. +...|..+...|-+.|+.+.|+.-|.-+.+.+.++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 444566677789999999999999885322 55667788899999999999999998888755433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.5e-11 Score=98.80 Aligned_cols=304 Identities=15% Similarity=0.106 Sum_probs=226.4
Q ss_pred CCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-C---CHHHH
Q 038748 63 IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-L---SLATF 138 (482)
Q Consensus 63 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~ 138 (482)
.+++..-+..+=-....+++.|.+.|-.|.+ ..+-+.++.-+|.+.|-+.|..+.|+.+-..+..+.- + -..+.
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3455555544444667899999999999988 6666778888899999999999999999999888753 2 23455
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-CCCCC----HHHHHHHHHH
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG-RIKPD----NDTYAILLEG 213 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~----~~~~~~l~~~ 213 (482)
-.|.+-|...|-++.|..+|..+.+.|. --......|+..|-...+|++|+++-+++.+ +..+. ...|.-+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 6777889999999999999999988543 3456788899999999999999999887654 22222 2346677777
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+....+.+.|..++.+..+. .|..+.+--.+....... |++..|++.++...+.+..--..+...+..+|...|+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 190 ALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 77889999999999988743 676666666677777788 99999999999998877555567788888999999999
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---GRKLWEASGL 370 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~ 370 (482)
++....+..+. +. .++...-..+-.......-.+.|...+.+-... +|+...+..+|..-.. -|...+...+
T Consensus 266 ~~~~~fL~~~~-~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 266 AEGLNFLRRAM-ET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHH-Hc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 99999998886 33 334434444444444444455555555444443 5899999999887644 3445666677
Q ss_pred HHHHHhCC
Q 038748 371 FNEMVKNE 378 (482)
Q Consensus 371 ~~~~~~~~ 378 (482)
++.|+...
T Consensus 341 lr~mvge~ 348 (389)
T COG2956 341 LRDMVGEQ 348 (389)
T ss_pred HHHHHHHH
Confidence 77776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-10 Score=97.13 Aligned_cols=300 Identities=8% Similarity=-0.017 Sum_probs=228.4
Q ss_pred HHHHHHHhh--CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 105 NLVVDLLGK--NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 105 ~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
..+.+++.+ .|+|..|+++..+-.+.+......|..-+.+--+.|+.+.+-.++.+..+..-.++...+-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 334444443 799999999999988887766677888888888889999999999999886445667777788888999
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC------hhhHHHHHHHHHccCC
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN------VPAYDSYLITLLKGCD 256 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 256 (482)
.|+.+.|..-.+.+....+.+.........+|.+.|++.....++..+.+. +.-.+. ..+|+.++.-.... +
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~-~ 243 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDD-N 243 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhcc-c
Confidence 999999999888877767888899999999999999999999999999864 544321 13566666666666 6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
..+.-...++..-.. ..-+...-.+++.-+...|+.++|.++..+.. +.+..|+. . ..-.+.+-++.+.-++..
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L---~-~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRL---C-RLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhH---H-HHHhhcCCCCchHHHHHH
Confidence 666655666655433 34456667788888999999999999999987 44444441 1 122345667777666666
Q ss_pred HHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 337 DEMVYN-GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 337 ~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
++-.+. +. ++..+..+-..|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|+.++|.++.++..-.-..
T Consensus 318 e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 318 EKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 655443 33 446788888899999999999999997766 5788999999999999999999999999887643333
Q ss_pred C
Q 038748 416 D 416 (482)
Q Consensus 416 p 416 (482)
|
T Consensus 394 ~ 394 (400)
T COG3071 394 P 394 (400)
T ss_pred C
Confidence 3
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-12 Score=118.68 Aligned_cols=242 Identities=15% Similarity=0.090 Sum_probs=146.4
Q ss_pred CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 95 LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 95 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
.|..|+..+|..+|..||..|+.+.|- +|.-|.-+.. .+...++.++.+..+.++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 477788888888888888888888877 8888877775 46677788888777777776665 4777788
Q ss_pred HHHHHHHHhcCChHh---HHHHHHHhhC-----C-----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 174 NSLLSAICRDGKTID---AWQFLRVVDG-----R-----------------IKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~---a~~~~~~~~~-----~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
..|+.+|...||+.. +++.+..+.. | .-||.. ..+....-.|-++.+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHh
Confidence 888888888887654 2221111111 1 111111 12222333455555555554
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 308 (482)
.+.......|. ..+++-.......+++...+.+.... .|+..+|..++.+-...|+++.|..++.+| ++.|
T Consensus 164 ~~Pvsa~~~p~-----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~g 234 (1088)
T KOG4318|consen 164 KVPVSAWNAPF-----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKG 234 (1088)
T ss_pred hCCcccccchH-----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcC
Confidence 44321111111 01122222221222222222222222 477777777777777777788787777777 4777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
++.+..-|-.|+-+ .++...++.++.-|.+.|+.|+..|+.--+-.+..+|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77777766666654 66777777777777777777777777766666665444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-09 Score=93.95 Aligned_cols=347 Identities=13% Similarity=0.039 Sum_probs=231.3
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHhhCChhhH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF--ASVFSSYVVADRVKDA 154 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a 154 (482)
..|....|.+.|..... ..+-.-.+|..|...+ .+.+.+..+ ....+.+..-. -.+..++-.....+++
T Consensus 176 ~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~li---t~~e~~~~l----~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELI---TDIEILSIL----VVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred hhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhh---chHHHHHHH----HhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777776554 3333444444444333 222222222 22122111111 1234455566678888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+=.+.....|+.-+...-+....+.-...|+|+|+.+|+++.+..+ .|..+|+.++-+--.+..+ ..+.+-.
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v 322 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNV 322 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHH
Confidence 88888888888765555555555566677899999999999876432 3667777766443222221 2221111
Q ss_pred -HhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCC
Q 038748 232 -IEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFR 310 (482)
Q Consensus 232 -~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 310 (482)
.-....|. |.-.+.+.+.-. ++.++|...|+...+.+ +-....|+.+..-|...++...|.+-++..++- .+
T Consensus 323 ~~idKyR~E---TCCiIaNYYSlr-~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p 395 (559)
T KOG1155|consen 323 SNIDKYRPE---TCCIIANYYSLR-SEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NP 395 (559)
T ss_pred HHhccCCcc---ceeeehhHHHHH-HhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cc
Confidence 11244453 555555555556 89999999999988864 234667888889999999999999999998722 14
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH
Q 038748 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV 390 (482)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 390 (482)
.|-..|..|-.+|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|+.....|-. +...+..|.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 578899999999999999999999999988853 237788999999999999999999999999887643 567888999
Q ss_pred HHHhcCCChHHHHHHHHHHHH----cCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIE----NHCSDLSE--TGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+.|-+.++.++|...|...++ .|...+.. .---|..-+.+.+++++|..+.....
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999999999999998887764 23322211 11224455677888888877665544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-11 Score=103.99 Aligned_cols=363 Identities=13% Similarity=0.044 Sum_probs=227.5
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENV-LSL----ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
-..+.+...+.+|+++|......-+ .+. ...+.+.-.|.+.|.++.|+.-|+...+. .|+..+--.|+-++..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 3455566778888888877666533 222 33444555678899999999999988875 4777765556666667
Q ss_pred cCChHhHHHHHHHhhC-------------CCCCCHHHHHHHHH-----HHHhcCC--HHHHHHHHHHhHHhcCCCCCChh
Q 038748 183 DGKTIDAWQFLRVVDG-------------RIKPDNDTYAILLE-----GWEKERD--VANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
-|+.++..+.|..|.. ...|+....+..|. -.-+.+. -++++-.--++.. .-+.|+-..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~ 400 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAA 400 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhc
Confidence 7899999988888643 12344443333222 1212111 1122111111111 122222100
Q ss_pred ------------hH--------HHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHH--------------
Q 038748 243 ------------AY--------DSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA--FEE-------------- 286 (482)
Q Consensus 243 ------------~~--------~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~-------------- 286 (482)
.+ -.-...+++. |+++.|+++++-+.+...+.-...-+.+ +..
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00 1113456788 9999999999887665322211111111 110
Q ss_pred --------------------HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 287 --------------------CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 287 --------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
....|++++|.+.+++.+ ...-.-....|| +--.+-..|+.++|++.|-++..- +.-
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 113577888888888876 221111112222 223456678888888888776543 223
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
+......+...|....+...|.+++-..... ++.|+.....|...|-+.|+-..|...+-+--. -++.+..+..-|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHH
Confidence 5566667777788888888888888766543 344677888899999999998888876543322 24556677777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHhh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ-ILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~ 481 (482)
-|....-+++++.+|++.. =++|+..-|..++- ++.+.|++.+|.++++.+.+
T Consensus 635 yyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7888888899999999864 36799999988776 56788999999999987653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-10 Score=112.36 Aligned_cols=269 Identities=9% Similarity=0.020 Sum_probs=188.3
Q ss_pred cCCCCHHHHHHHHHHHHh-----hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---------cCChHhHHHHHHH
Q 038748 130 ENVLSLATFASVFSSYVV-----ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---------DGKTIDAWQFLRV 195 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~ 195 (482)
..+.+...|...+++-.. .+.+++|.+.|++..+... -+...|..+..++.. .+++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 334566667777666422 2456899999999988642 244556655555442 2457899999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC
Q 038748 196 VDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP 275 (482)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 275 (482)
.....+.+...+..+...+...|++++|...|++..+ +.|++..++..+...+... |++++|+..+++..+....
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~- 404 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPT- 404 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-
Confidence 7776677888999999999999999999999999974 4788888898888899998 9999999999999886422
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ-TYNI 353 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 353 (482)
+...+..++..+...|++++|...+.++.+. . .| +...+..+..+|...|+.++|...+.++... .|+.. ..+.
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~ 480 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNL 480 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 2223334444566789999999999988632 2 24 4555677788888999999999999887664 34433 3444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNE-NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 413 (482)
+...+...| ++|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 555566666 47777777766542 22222222 33445556777777666 7777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-09 Score=95.09 Aligned_cols=386 Identities=11% Similarity=-0.001 Sum_probs=240.7
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCC-HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHS-PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
..+..++|++++.|... ..|| +.-|.....+|...|+|+++.+--....+.++.-..++..-..++-..|++++|+
T Consensus 127 ~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred hcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 36788999999999886 4566 7889999999999999999998888888877655666666777777788888775
Q ss_pred HHHHHH-HhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hhC---CCCCCHHHHHHHHHHHH---------------
Q 038748 156 TTFDVM-EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDG---RIKPDNDTYAILLEGWE--------------- 215 (482)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~---~~~~~~~~~~~l~~~~~--------------- 215 (482)
.=..-. +-.|+. +..+--.+=+.+-+ .|.+-.++ +++ ..-|+.....+....+.
T Consensus 204 ~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 204 FDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred HhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 422111 111211 11111111111111 11111111 221 12222222222222211
Q ss_pred --------h--cC---CHHHHHHHHHHhHHhcCCCC-----CC-----hhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 216 --------K--ER---DVANAKKTFGEMVIEVGWDP-----DN-----VPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 216 --------~--~~---~~~~a~~~~~~~~~~~~~~p-----~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
. .+ .+..|.+.+.+-.......+ |. ..+...-...++-. |+...+.+-|+..++..
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~-g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK-GDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc-CCchhhhhhHHHHHhcC
Confidence 0 11 23333333322211000011 00 11111111112233 88899999999988865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
..++. .|.-+..+|....+.++..+.|.... +.+ +-+..+|..-...+.-.+++++|..=|++....... +...|-
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~-~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~i 432 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAE-DLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYI 432 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHH-hcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHH
Confidence 44333 37777788999999999999999885 322 224556666666777778999999999998875221 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-----CChhh--HHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-----DLSET--GNLLV 425 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~--~~~li 425 (482)
.+.-+..+.+++++++..|++..+. ++-.+..|+.....+...++++.|.+.|+..++..-. .+... --.++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 5555566788999999999999876 3446778999999999999999999999998863211 11111 11122
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..-. .+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++-
T Consensus 512 ~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 512 VLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1112 38899999999999877633 3468999999999999999999999874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=117.38 Aligned_cols=273 Identities=13% Similarity=0.035 Sum_probs=199.1
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 122 DAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 122 ~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
.++-.+...|+ |+..||..+|..|+..|+.+.|- +|..|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677788886 89999999999999999999998 9988887777778888999999999998888775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH-HcCCCCCHHH
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM-ERGCNPGMTF 279 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~ 279 (482)
.|...||..|..+|...||+.. |+...+ -...+...+... |.......++..+. ..+.-||..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDH-GVGSPERWFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhh-ccCcHHHHHHhhcccCcccchhHH-
Confidence 7888999999999999999876 333221 011223333444 55555555554432 233445543
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN-ETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
..+....-.|-++.+.+++..+.......|..+ ++.-..... .+++-..+.....+ .|+..+|..++.+-
T Consensus 144 --n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 144 --NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 345555667888888888877642222222222 233333222 23333333333333 48999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
..+|+.+.|..++.+|.+.|+..+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999999999988888876 78899999999999999999999999988888877665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-08 Score=93.77 Aligned_cols=408 Identities=14% Similarity=0.082 Sum_probs=247.9
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL 133 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (482)
+...|...+-++..-..-.+.-.+.|+-++|.+....-.+ +...+.+.|+.+.-.+-...++++|++.|......+..
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 5555665666666666666666788999999999887666 66778888999888888889999999999999999988
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC--CCCHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI--KPDNDTYAILL 211 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~ 211 (482)
|...|.-+.-.-++.|+++..........+... .....|..+..++.-.|+...|..+.+...+.. .|+...|....
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 999998888888888999988888888877531 244568888888888999999999999876533 46666655433
Q ss_pred ------HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 212 ------EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285 (482)
Q Consensus 212 ------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 285 (482)
....+.|..+.|.+.+...... ..|....-.+-...+.+. +++++|..++..++... ||...|...+.
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl-~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~ 260 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKL-GQLEEAVKVYRRLLERN--PDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHH-hhHHhHHHHHHHHHhhC--chhHHHHHHHH
Confidence 3345678888888777665422 222233333445556666 99999999999998864 77666665554
Q ss_pred HHH-hcCChhHHH-HHHHHhhcccCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 286 ECL-TGQNLRGAE-FIWGAMVGRIGFRPDTHMYNMMISLYCY-SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 286 ~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
.+. +..+.-++. .+|....+. .|....-..+--.... ..-.+..-.++..+.+.|+.+- +..+...|-...
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~ 334 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchh
Confidence 444 344444444 566655311 1111100000000111 1122333445555566665432 222222221111
Q ss_pred CHHH----HHHHHHHHHhCC----------CccChhhHH--HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 038748 363 KLWE----ASGLFNEMVKNE----------NVLNHENCR--AAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLV 425 (482)
Q Consensus 363 ~~~~----a~~~~~~~~~~~----------~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li 425 (482)
..+- +..+...+...| -.|+...|. .++..|-+.|+++.|...++..+++ .|+. ..|-.=.
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~Ka 412 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKA 412 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHH
Confidence 1111 111111111111 023333333 3555666677777777777766653 3443 3333334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..+...|++++|..++++..+.+. +|..+-..-.+...++++.++|.+++.+.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 556667777777777777766652 45555555666666667777776665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-10 Score=98.65 Aligned_cols=197 Identities=11% Similarity=0.000 Sum_probs=109.3
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 455666666666677777777777766665555556666666666666677777666666665432 2344555556666
Q ss_pred HhcCChHhHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
...|++++|.+.++..... .......+..+..++...|++++|...+++... ..|++...+..+...+... |++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~-~~~ 185 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLR-GQY 185 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHc-CCH
Confidence 6666666666666664321 122334445555555666666666666665542 2343444455555555555 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++|.+.+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555443 1223333444444444555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-10 Score=110.02 Aligned_cols=268 Identities=11% Similarity=0.013 Sum_probs=196.3
Q ss_pred CCCHhhHHHHHHHHhh-----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh---------CChhhHHHHHHHHHh
Q 038748 98 KHSPYAWNLVVDLLGK-----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA---------DRVKDAITTFDVMEQ 163 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~ 163 (482)
..+...|...+.+... .+++++|..+|++..+..+.+...|..+..++... +++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4566666666665321 24578999999999999887888888777665532 448999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 164 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
.+. -+...+..+...+...|++++|...|++.....+.+...+..+..++...|++++|...+++.. .+.|++...
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~ 408 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAA 408 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhh
Confidence 753 3677888888889999999999999999776667778889999999999999999999999997 457765555
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHH
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISL 322 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 322 (482)
+..++..+... |++++|+..+++......+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...
T Consensus 409 ~~~~~~~~~~~-g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~ 484 (553)
T PRK12370 409 GITKLWITYYH-TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHHHhc-cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHH
Confidence 55555567777 999999999999876542224555677788888999999999999987522 333 4445556667
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 323 YCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
|+..| ++|...++.+.+.. ..+....+..+ .+.-.|+-+.+..+ +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 77777 47777777766531 22332333333 34445676666555 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-10 Score=97.11 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=184.8
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
+.+.++|.+.|.+.+|.+-|+...+. .|-+.||-.|-++|.+..+.+.|+.++.+-.+..+-|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 67889999999999999999988875 4677788889999999999999999999977777778877888899999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 038748 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 298 (482)
+.++|.++|+...+ ..|.++.+...+...++-. ++++-|+.+|+.+.+.|+. +...|..+.-+|.-.+++|-++.
T Consensus 305 ~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK---LHPINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hHHHHHHHHHHHHh---cCCccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999874 4676777777788888888 9999999999999999865 56778888888888899999888
Q ss_pred HHHHhhcccCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 299 IWGAMVGRIGFRPD--THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 299 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
-|.+.+ .--..|+ ..+|..+-......||+.-|.+.|+-....+.. ....++.|.-.-.+.|++++|..++.....
T Consensus 380 sf~RAl-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRAL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888775 2222232 345666766677778888888888777765332 456677777777788888888888877765
Q ss_pred C
Q 038748 377 N 377 (482)
Q Consensus 377 ~ 377 (482)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 4
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=82.08 Aligned_cols=50 Identities=46% Similarity=0.659 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038748 311 PDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360 (482)
Q Consensus 311 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 360 (482)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-09 Score=99.65 Aligned_cols=292 Identities=10% Similarity=0.073 Sum_probs=169.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhc--
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSLLSAICRD-- 183 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~-- 183 (482)
....+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556677777777777766555444445566667777777777888888877777765 34333 44444444222
Q ss_pred ---CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 184 ---GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA-NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 184 ---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
.+.+...++|+++....+ .......+.-.+.....+. .+...+..+..+ |+ | .++..+-..|... ....
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gv-P---slF~~lk~Ly~d~-~K~~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GV-P---SLFSNLKPLYKDP-EKAA 160 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CC-c---hHHHHHHHHHcCh-hHHH
Confidence 245566667777655432 2222222211122222222 223334444433 43 2 1455544444433 4444
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHH
Q 038748 260 ETVNSLKRMMER----G----------CNPGM--TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISL 322 (482)
Q Consensus 260 ~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 322 (482)
-..+++...... + -+|+. .++.-+...|...|++++|.++++..+ .+ .|+ +..|..-.+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHH
Confidence 455555554332 1 12333 234555666777888888888888776 22 454 5567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhh--------HHHHHHHHh
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHEN--------CRAAVRVYM 394 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~ 394 (482)
|-..|++++|.+.++...+.... |...=+.....+.++|++++|.+++....+.+..|-... ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887776443 555566666777788888888888887776654332211 123456777
Q ss_pred cCCChHHHHHHHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~ 411 (482)
+.|++..|++.|..+.+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888777666553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-10 Score=97.46 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 284 (482)
..+..+...+...|++++|...+++.... .|++...+..+...+... |++++|.+.+++..+.. +.+...+..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQL-GELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34444555555555555555555555422 343444444444444444 55555555555444432 11223333444
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 038748 285 EECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+...|++++|.+.+....
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 44444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-09 Score=100.48 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=41.1
Q ss_pred HHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----
Q 038748 143 SSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE----- 217 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 217 (482)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+....+.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3445555555555555443332 2222333444445555555555555555555444444444444444444221
Q ss_pred CCHHHHHHHHHHhH
Q 038748 218 RDVANAKKTFGEMV 231 (482)
Q Consensus 218 ~~~~~a~~~~~~~~ 231 (482)
.+.+...++|+++.
T Consensus 91 ~~~~~~~~~y~~l~ 104 (517)
T PF12569_consen 91 EDVEKLLELYDELA 104 (517)
T ss_pred ccHHHHHHHHHHHH
Confidence 13444455555554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-08 Score=90.91 Aligned_cols=356 Identities=15% Similarity=0.047 Sum_probs=222.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHh
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICR 182 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 182 (482)
+-....-|-++|++++|++.|.+..+..+..+..|.....+|...|+|+++.+.-....+. .|+ +..+.--..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3344456677899999999999998876554777888888999999999998888877774 344 2344555566677
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh--------HH--hcCCCCCChhhHHHHHHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM--------VI--EVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~--~~~~~p~~~~~~~~l~~~~~ 252 (482)
.|++++|+.=. |-..++.++....-.-.+.++++.. .+ +..+-| +.....+....+.
T Consensus 196 lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~ 262 (606)
T KOG0547|consen 196 LGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFH 262 (606)
T ss_pred hccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhcc
Confidence 78888775421 2222222222222222223332221 11 112233 2222233222221
Q ss_pred ccC---------------------------CChHHHHHHHHHHHHc-CCCC-----CH------HHHHHHHHHHHhcCCh
Q 038748 253 KGC---------------------------DGIYETVNSLKRMMER-GCNP-----GM------TFFKLAFEECLTGQNL 293 (482)
Q Consensus 253 ~~~---------------------------~~~~~a~~~~~~m~~~-~~~~-----~~------~~~~~li~~~~~~g~~ 293 (482)
... ..+.++.+.+.+-... -..+ |. .+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 110 1222222222221110 0011 11 1111112223346888
Q ss_pred hHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
-.|..-|+..++- .| +...|--+..+|...++.++....|++..+.+.. +..+|..-.+...-.+++++|..=|+
T Consensus 343 ~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 343 LGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred hhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999988722 23 2233777778899999999999999999886543 56677777777777889999999999
Q ss_pred HHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----
Q 038748 373 EMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG---- 448 (482)
Q Consensus 373 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---- 448 (482)
+.++.... +...|--+..+..+.+.+++++..|++.+++ ++-....|+.....+...++++.|.+.|+..++..
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 99886543 5556666666777899999999999999875 54555899999999999999999999999987653
Q ss_pred -CCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 449 -IQVTP--FALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 449 -~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+..+. .+-..++. +.=.+++..|.+++++..+
T Consensus 497 ~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE 531 (606)
T ss_pred cccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc
Confidence 22222 22222222 2233888999999888654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=80.89 Aligned_cols=49 Identities=29% Similarity=0.364 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 416 DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 416 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-08 Score=88.73 Aligned_cols=400 Identities=12% Similarity=0.037 Sum_probs=259.7
Q ss_pred CCHHHHHHHHH---hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Q 038748 65 VSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141 (482)
Q Consensus 65 ~~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 141 (482)
+....+-.++. ..-.+.++|++.|.-+.. ..+-|...|..+--.-.+.|+++..........+..+.....|..+
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444444444 455778999999998877 6677888898888888889999999999888888877777889999
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcC-CCCCHhhHHHHH------HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYG-CKHDVFALNSLL------SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
..++.-.|+...|..+++...+.. -.|+...+.... ....+.|..+.|.+.+......+......-.+-...+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 999999999999999999998764 246666665443 3345678888888877766544444444455667788
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~ 293 (482)
.+.+++++|..++..+..+ .||+...|..+..++.+-.+..+....+|....+.- |-...- ..=+.......-.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhH
Confidence 8999999999999999865 898887777777777533144444446666554421 111110 0111111112222
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCC----------CCCHh--hHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL----DEMVYNGA----------FPDIQ--TYNILFEF 357 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~----------~p~~~--~~~~ll~~ 357 (482)
+...+++..++ +.|+++ ++..+...|-.-...+-..++. ..+...|. .|... ++..++..
T Consensus 305 ~~vdkyL~~~l-~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 305 EIVDKYLRPLL-SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHh-hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 33444555554 555543 2333333333222211111111 11111111 34443 34556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLN-HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 436 (482)
+-..|+++.|..+++..+.+ .|+ ...|..=.+.+...|++++|..++++..+.+. +|...-.--.+-..++++.++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHH
Confidence 88899999999999998875 233 23444455788889999999999999988763 564444455666778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH----------HHHHHHHhccHHHHHHHHHHHh
Q 038748 437 AVKYAKGMAEKGIQVTPFALSK----------LKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~~~~~~~----------l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
|.++.....+.|. +...... -..+|.+.|++..|+.=+..+.
T Consensus 458 A~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 458 AEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 9999999987774 2222111 1236888888877776555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-09 Score=94.37 Aligned_cols=283 Identities=12% Similarity=0.009 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+......-.+-|...+++++..++++...+.. ++....+..-|.++...|+..+...+=..+.+..+....+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 44555566677778889999999999888763 34556666777788888888777776677777778888899999888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
|.-.|+..+|.+.|.+.. .++|.-...|-.+...+.-. +.-+.|+..+...-+. ++-...-+--+.--|.+.+++
T Consensus 322 Yl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 888899999999998874 66776667888888888888 8999999888776553 111111122234457788999
Q ss_pred hHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHhhHHHHHHHHHhcCCHHH
Q 038748 294 RGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN----G--AFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
+.|.+.|.+.. ++.| |+.+.+-+--.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999876 4444 5666776666666778889999888876631 1 01244567888888999999999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGL 428 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (482)
|+..++..+....+ +..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999998877544 788888999999999999999999988775 567766666655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-07 Score=80.42 Aligned_cols=388 Identities=8% Similarity=-0.050 Sum_probs=214.6
Q ss_pred HHHHHHHhh---cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038748 69 TVEQVLKFS---YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY 145 (482)
Q Consensus 69 ~~~~ll~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 145 (482)
.+...|..| -|+.++|+..+..+.. ...++...+-.+.-.+--.|.+.+|..+-....+ +.-.-..++..-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhla 131 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLA 131 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHH
Confidence 455555533 5788888888887666 4455566665555555556666676665444322 222233344444
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA-ILLEGWEKERDVANAK 224 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 224 (482)
-+.++-++-....+.+.. +..---+|.......-.+.+|+++|..+... .|+....| .+.-+|.+..-++-+.
T Consensus 132 hklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 132 HKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 455555555554444433 1122233444444445677788888775432 23333333 2344666777777777
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH--------------HHcC------------CCCC--
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM--------------MERG------------CNPG-- 276 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m--------------~~~~------------~~~~-- 276 (482)
+++.-..+. .||++.+.|.......+. -.-..|.+-..++ .+.+ +-|.
T Consensus 206 evl~vYL~q---~pdStiA~NLkacn~fRl-~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 206 EVLKVYLRQ---FPDSTIAKNLKACNLFRL-INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHhhh-hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 777766643 566666666655555443 1111122211211 1111 0010
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 038748 277 ---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL-----YCYSNETGAAMKLLDEMVYNGAFPDI 348 (482)
Q Consensus 277 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~ 348 (482)
+..-..++-.|.+.+++++|..+.+++. ...|-....-.++.+ ......+.-|.+.|+..-+.+..-|.
T Consensus 282 ~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 282 KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 1122334556778889999988887763 223322222222211 11122355666777666555554443
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 038748 349 Q-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVA 426 (482)
Q Consensus 349 ~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 426 (482)
. .-.++..++.-..++++++.+++.+..--..-|. .--.+.++++..|++.+|+++|-.+....++.+ .+| ..|..
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~-~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNK-ILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh-HHHHHHHHH
Confidence 2 2344555556667788888888877654333333 333577888889999999999877765555433 455 44558
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFA-LSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+|.++++++-|+.++-++- ..-+... +..+.+.|.+.+.+=-|-+.|+.+.
T Consensus 437 Cyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8889999998888765542 2223333 3444557888888766655555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-07 Score=84.97 Aligned_cols=124 Identities=13% Similarity=-0.018 Sum_probs=77.5
Q ss_pred HHHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038748 68 ETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYV 146 (482)
Q Consensus 68 ~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (482)
..+..+=+ ...+++++|.+....+.. ..+-+...+..=+-++.+.+++++|+.+.+.-......+.. +.--..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH
Confidence 33344333 446778888888887776 55556666777777778888888888555432221111111 122244556
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
+.+..++|+..++.... .|..+...-...+.+.|++++|..+|+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77888888888873222 2333555566777788888888888888743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-09 Score=93.90 Aligned_cols=268 Identities=9% Similarity=-0.047 Sum_probs=139.9
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
..++....++++.+.. -.++....+..-|..+...|+..+-..+=..+.+..|....+|-++.-.|...|+..+|.+.
T Consensus 257 ~c~f~~c~kit~~lle--~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLE--KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHh--hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 3455566666665554 34444555555555666666666665555566665555555566666666666666666666
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
|.+....+.. =...|-...+.|+-.|..|+|...+....+-.+..-.-+.-+.--|.+.++++.|.++|.+.. ++.
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~ 410 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA 410 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence 6555442211 123455556666666666666665554333222222222333344555666666666666553 555
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----G--CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 311 (482)
|.++...+.+....... +.+.+|..+|+..... + ..--..+++.+..+|.+.+.+++|...++..+.. .+.
T Consensus 411 P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k 487 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPK 487 (611)
T ss_pred CCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCC
Confidence 65555555555555555 6666666666554421 0 0012233455555555555555555555555411 133
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFE 356 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 356 (482)
+..++.++.-.|...|+++.|.+.|++... +.|+..+...++.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 455555555555555555555555555443 3455444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-09 Score=91.37 Aligned_cols=236 Identities=9% Similarity=-0.024 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
|-.--+.+.++|.+.|.+.+|++.|+...+. .| -+.+|-.+-..|.+. +++..|+.++.+-.+. .+-|......
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~-~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FP-HPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CC-chhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 4444456778888888888888888777643 33 345777777778777 8888888888776653 2333333445
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
+.+.+-..++.++|.++++...+.. +.++....++...|.-.++++-|+.+|..+.+-|+. +...|+.+.-+|.-.+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 5667777888999999999987444 345666667777888889999999999999999986 7788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (482)
+++-++.-|.+....--.|+ ...|-.+.......||+..|.+.|+-....+- .+...+|.|.-.-.+.|++++|..+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHH
Confidence 99999999998877644333 34677777778889999999999998886542 3447888888888899999999999
Q ss_pred HHHHHHcC
Q 038748 441 AKGMAEKG 448 (482)
Q Consensus 441 ~~~m~~~~ 448 (482)
++......
T Consensus 452 l~~A~s~~ 459 (478)
T KOG1129|consen 452 LNAAKSVM 459 (478)
T ss_pred HHHhhhhC
Confidence 99877543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-06 Score=81.30 Aligned_cols=386 Identities=10% Similarity=0.080 Sum_probs=217.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhCC
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-------VLSLATFASVFSSYVVADR 150 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~ 150 (482)
.+-|+-++.+++...+ .++..-+-.|..+++.+++++|.+.+....... ..+...|..+-+..++.-+
T Consensus 151 ~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred CCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 4555667777776555 455667777888888888888888887766543 2345556665555555433
Q ss_pred hhh---HHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCChHhHHHHHHH-hhCCCCCCHHHHHHHHHHHHh--------
Q 038748 151 VKD---AITTFDVMEQYGCKHDV--FALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGWEK-------- 216 (482)
Q Consensus 151 ~~~---a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~-------- 216 (482)
.-. ..++++.+.. .-+|. ..|++|.+-|.+.|.+++|..+|++ |.. ..+..-|..+.++|+.
T Consensus 226 ~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 226 KVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred hhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHH
Confidence 222 2333333332 22343 4578888888888888888888887 433 1122223333333322
Q ss_pred --------cC------CHHHHHHHHHHhHHh---------cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC
Q 038748 217 --------ER------DVANAKKTFGEMVIE---------VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273 (482)
Q Consensus 217 --------~~------~~~~a~~~~~~~~~~---------~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~ 273 (482)
.| +++-....|+.+..+ ...+|.++..|..-.. +.. |+..+....|.+..+. +
T Consensus 302 ~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e-~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 302 KMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYE-GNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhc-CChHHHHHHHHHHHHc-c
Confidence 11 223333444444322 1123333433332222 223 5677777777777653 2
Q ss_pred CC------CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 274 NP------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD---THMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 274 ~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
.| -...|..+...|-..|+++.|..+|++.. +-..+-- ..+|..-...=.+..+++.|+++++......-
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 22 13457777888888999999999998875 3222111 33455555555567778888887776543211
Q ss_pred C----------C-------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 345 F----------P-------DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 345 ~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
. | +...|...+......|-++....+++.+++..+. ++.......-.+-...-++++.++|+
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 1 1233444455555567788888888888876654 22222222223334556778888877
Q ss_pred HHHHcCCCCCh-hhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 408 YMIENHCSDLS-ETGNLLVAGLCD---MHMLPEAVKYAKGMAEKGIQVTPF--ALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 408 ~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.-+..--.|+. ..|+..+..+.+ .-..+.|..+|++..+ |.+|... .|......=-+-|....|++++++.
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66554333444 567777665553 2357888888888887 5555442 2222222223446667777777664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=94.93 Aligned_cols=198 Identities=15% Similarity=0.082 Sum_probs=105.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcc----cC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-h
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGR----IG-FRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN-----GA-FPDI-Q 349 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~ 349 (482)
+...|...+++++|..+|++++.. .| ..| -..+++.|..+|.+.|++++|...++...+- |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334444555555555555544311 01 011 1234555555566666666655555443321 11 1111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CC--CC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HC--SD 416 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~--~p 416 (482)
.++.+...|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++..+.. +- .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2444555566666777776666655442 1111 2345666777777777777777777766531 11 11
Q ss_pred C-hhhHHHHHHHHHhcCChhHHHHHHHHHH----HcCC-CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 417 L-SETGNLLVAGLCDMHMLPEAVKYAKGMA----EKGI-QVT-PFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 417 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
. ...++.|...|.+.+++++|.++|.+.. ..|. .|+ ..+|..|...|.+.|+++.|+++.++..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 2455666667777777777777776543 2232 122 2567777777777777777777766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-08 Score=84.57 Aligned_cols=286 Identities=8% Similarity=0.036 Sum_probs=162.1
Q ss_pred CCCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhcCChHhHH
Q 038748 114 NCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~ 190 (482)
.++...|...+-.+.... +-+......+..++...|+.++|...|+.....+ |+..+ ...-.-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444333333 3466777777777777777777777777765532 32211 112222344566666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+...+-....-...-|-.-.......+++..|+.+.++.. ...|.+...+-.-...+... ++.++|.-.|+..+.
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHh
Confidence 65555433222333334444444455667777777766665 34555555555555566666 777777777776655
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI-SLYC-YSNETGAAMKLLDEMVYNGAFPDI 348 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~g~~p~~ 348 (482)
.. +-+...|..++.+|...|++.+|.-+-....+.. ..+..+.+.+- ..+. ...--++|.+++++-... .|+.
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 32 2356677777777777777777766555543222 22333333331 1111 122235676666665543 4443
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 349 -QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 349 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
...+.+...|...|..+.+..+++.... ..||....+.|.+.+...+.+++|++.|......
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2345555666667777777777777665 3566677777777777777777777777766653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-08 Score=94.24 Aligned_cols=242 Identities=14% Similarity=0.023 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-----C
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIE----VGW-DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-----G 272 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-----~ 272 (482)
-..+...+...|...|+++.|+.+++...+. .|. .|.-....+.+...|... +++++|..+|+++..- |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666666666666666666655432 121 222222333355556666 7777777777766541 2
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 038748 273 -CNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR----IGF-RPDT-HMYNMMISLYCYSNETGAAMKLLDEMVYN-- 342 (482)
Q Consensus 273 -~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 342 (482)
..| -..+++.|..+|.+.|++++|...++...+- .+. .|.+ ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 111 2345555666677777777766666554311 111 1222 23555666677778888887777655432
Q ss_pred -CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--cc-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 343 -GAFP----DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE----N--VL-NHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 343 -g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
-..+ -..+++.+...|...|++++|.+++++++... . .+ ....++-+...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 23567788888888888888888888776531 1 11 23456677777888888888888777654
Q ss_pred H----cCC-CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 411 E----NHC-SDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 411 ~----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
. .|. .|+. .+|..|...|...|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 222 2333 677888888888888888888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-07 Score=84.49 Aligned_cols=89 Identities=9% Similarity=0.013 Sum_probs=40.1
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH--HHHHHHHHHHHhc
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT--HMYNMMISLYCYS 326 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~ 326 (482)
..+... |++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+.....++. ..|..+...+...
T Consensus 122 ~~~~~~-G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEA-GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHc-CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 344444 55555555555555432 2223344444455555555555555555443211111121 1233444445555
Q ss_pred CCHHHHHHHHHHH
Q 038748 327 NETGAAMKLLDEM 339 (482)
Q Consensus 327 ~~~~~a~~~~~~m 339 (482)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-08 Score=78.70 Aligned_cols=197 Identities=13% Similarity=-0.007 Sum_probs=164.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
.+..-+.-.|...|++..|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+... -+..+.|.--..+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34556677888999999999999999999988888999999999999999999999999988653 35677888888889
Q ss_pred hcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 182 RDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
..|.+++|.+.|+.... ....-..+|..+.-+..+.|+.+.|...|++... ..|+...+.-.+....... |++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~-~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKA-GDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhc-ccch
Confidence 99999999999998543 3444556888888888999999999999998874 4777777888888889998 9999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.|..+++.....+. ++....-..|..-...|+.+.+.+.=..+.
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998888765 788888888888888899888887777764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-07 Score=84.59 Aligned_cols=377 Identities=10% Similarity=0.006 Sum_probs=249.6
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALN 174 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 174 (482)
...-|...|..+.-++.+.|+++.+.+.|++....-....+.|+.+...|...|.-..|..+++.-......|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34467888888888999999999999999998876667778899999999999998889998887765432343 33333
Q ss_pred HHHHHHH-hcCChHhHHHHHHHhhC-----CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhHHhcCCC
Q 038748 175 SLLSAIC-RDGKTIDAWQFLRVVDG-----RIKPDNDTYAILLEGWEKE-----------RDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 175 ~ll~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 237 (482)
..-..|. +.+..++++.+-.+..+ .-......|..+.-+|... ....++++.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 3333343 33666666665554322 1122334455554444321 2234567777777644 4
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-----
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----- 312 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 312 (482)
|.|..+...+..-+... ++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...++.|..-.
T Consensus 475 ~~dp~~if~lalq~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44444444444455555 789999999999998866678888888888888999999999998887766543110
Q ss_pred -------------HHHHHHHHHHHHh---------c--------------CCHHHHHHHHHHH--------HHCC-----
Q 038748 313 -------------THMYNMMISLYCY---------S--------------NETGAAMKLLDEM--------VYNG----- 343 (482)
Q Consensus 313 -------------~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~m--------~~~g----- 343 (482)
..|...++..+-. . ++..+|.+....+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1122222222210 0 0111111111110 0011
Q ss_pred ----CC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 344 ----AF--PD------IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 344 ----~~--p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
+. |+ ...|......+.+.++.++|...+.+..+.. ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1123344556677788888888887776643 33555666667778888999999999998877
Q ss_pred cCCCCCh-hhHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 412 NHCSDLS-ETGNLLVAGLCDMHMLPEAVK--YAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 412 ~~~~p~~-~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+.|+. .+..++...+.+.|+..-|.. ++..+.+.+. .++..|..+...+.+.|+.+.|.+.|....
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 44554 677889999999998888887 9999998874 578999999999999999999999887643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-07 Score=76.58 Aligned_cols=336 Identities=13% Similarity=0.049 Sum_probs=216.0
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 62 LIRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 62 ~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
|+.+....+..++. ..-.+..+|++++..... ..+.+....+.+...|-...++..|-..++++....+.-..---
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 33333343444444 234566778887775544 34457888899999999999999999999998876542222222
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH--HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
--.+.+.+.+.+..|+.+...|... ++...-..-+.+. ...+++..+..+.++... ..+..+.+...-...+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeecc
Confidence 3356677889999999999888652 3332222223333 346788888888887653 23444555555566789
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-------------CHH------
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-------------GMT------ 278 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~~------ 278 (482)
|+++.|.+-|+...+-.|..| ..+|+..+. ..+. ++++.|++...++.++|+.- |..
T Consensus 158 gqyEaAvqkFqaAlqvsGyqp--llAYniALa-Hy~~-~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQP--LLAYNLALA-HYSS-RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCc--hhHHHHHHH-HHhh-hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 999999999999988788888 357766554 4555 89999999999998876431 211
Q ss_pred ---------HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 279 ---------FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 279 ---------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.+|.-...+.+.|+++.|.+-+-+|..+.....|++|...+.-.= ..+++.+..+-+.-+.+.+.. ...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChH
Confidence 122222334577899999999988876666667777766554222 234455555555555555443 457
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNEN-VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
||..++-.||++.-++.|-.++.+-...-. -.+...|+.+=....-.-..++|.+-++.+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888899999888888887765322211 1233344433222233456777776665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-07 Score=84.26 Aligned_cols=216 Identities=11% Similarity=-0.053 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 115 CLFDAMWDAIKSMKKENVL----SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
+..+.++.-+.++...... ....|..+...+...|++++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4556666666666654321 234566666667777777777777777766542 24566777777777777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH-HHccCCChHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT-LLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~m~ 269 (482)
+.|+...+..+.+..+|..+..++...|++++|.+.|+.... ..|++. +..+... .... ++.++|.+.|.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~--~~~~~~~l~~~~-~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDP--YRALWLYLAESK-LDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH--HHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 777775544444566677777777777777777777777653 355443 1122222 2233 66777777775544
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
... .++...+ . ......|+...+ +.+..+.+.....+ ....|..+...+.+.|++++|...|++..+.
T Consensus 193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 322 2222111 1 222234444433 23333321111111 2245666666677777777777777766664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-06 Score=81.58 Aligned_cols=198 Identities=12% Similarity=-0.033 Sum_probs=122.5
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
...|..+...+...|+.+.+...+....+....+ ..........+...|++++|.++++...+... .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 4456666666666777777766666666554322 22223334455667888888888888776532 23333332 1
Q ss_pred HHHH----hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 178 SAIC----RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 178 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
..+. ..+..+.+.+.++......+........+...+...|++++|...+++... ..|++...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence 1222 234455555555442223333444555666777888888888888888863 467666677777777777
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 254 GCDGIYETVNSLKRMMERGC-NPGM--TFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
. |++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 Q-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred c-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7 888888888887766421 1222 234466777788888888888888774
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-08 Score=86.76 Aligned_cols=148 Identities=12% Similarity=-0.013 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcC-CCCC--HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 150 RVKDAITTFDVMEQYG-CKHD--VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++.....+.+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555421 1121 234555666666667777777766665554455666677777777777777777777
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
|+... .+.|++..++..+...+... |++++|++.|+...+.. |+..........+...++.++|...|...
T Consensus 121 ~~~Al---~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 121 FDSVL---ELDPTYNYAYLNRGIALYYG-GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHH---HhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 76665 34666666666666666666 77777777776666532 32221111222233445666666666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-07 Score=76.29 Aligned_cols=377 Identities=10% Similarity=0.026 Sum_probs=230.4
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.+...|..+++..... +..-...+--.+...+-+.|++++|...|.-+.+..-++...+..|.-++.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4556666666643331 111112223334456678999999999999999887778888888888888899999999887
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
....+ ++-....|++...+.|+-++-..+.+.+... ..--.++.......-.+.+|++++.++... .|
T Consensus 115 ~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 115 EKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred hhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 66533 3444555667777888888777776666542 233445556666667899999999999754 44
Q ss_pred CChhhHHHH-HHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCh----------------------
Q 038748 239 DNVPAYDSY-LITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQNL---------------------- 293 (482)
Q Consensus 239 ~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~---------------------- 293 (482)
.....|.- ..+|.+. +-++-+.++++...+. ++.+....+.......+ .|+.
T Consensus 183 -ey~alNVy~ALCyyKl-DYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 183 -EYIALNVYMALCYYKL-DYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred -hhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 33444443 4456666 8888888888776654 22223333332222222 1221
Q ss_pred -----------hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HH--
Q 038748 294 -----------RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LV-- 359 (482)
Q Consensus 294 -----------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~-- 359 (482)
+.|++++-.+. ++-| ..--.|+--|.+.+++++|..+.+++.- ..|-......+..+ +.
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~---~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLM---KHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHH---hhCh--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhh
Confidence 11222222111 1112 2233455667889999999988877542 12322222222221 11
Q ss_pred --hcCCHHHHHHHHHHHHhCCCccChhh-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 038748 360 --KGRKLWEASGLFNEMVKNENVLNHEN-CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 360 --~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 436 (482)
......-|.+.|+..-+++...|... -.++..++.-..++++.+-.++.+...-...| ..--.+..+++..|.+.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHH
Confidence 12235567777777666655444332 22444555555678888888887776433233 333346788999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 437 AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
|.++|-+.....++.+..-...|.++|.+.|+.+-|.+++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999988776655544444455667899999998888776554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-06 Score=77.18 Aligned_cols=375 Identities=10% Similarity=0.086 Sum_probs=219.6
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+-|..+|+.||+-+... ..+++.+.++++...-+.+...|..-|..-...++++....+|.+....-+ +...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 4567888888888877766 888888889888887777788888888888888889998888888876533 4555655
Q ss_pred HHHHHHh-cCChHh----HHHHHHHhhC--CCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 176 LLSAICR-DGKTID----AWQFLRVVDG--RIK-PDNDTYAILLEG---------WEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 176 ll~~~~~-~g~~~~----a~~~~~~~~~--~~~-~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
-++---+ .|+... ..+.|+-... |.. .+..+|+..+.. |....+++...++++++.. .|
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~----tP 167 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV----TP 167 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc----Cc
Confidence 5543322 233222 2223333211 211 223344444433 2334456666677776653 22
Q ss_pred C-C-------hhhHHHHHHHHHcc------CCChHHHHHHHHHHHH--cCCCCCH-------------------------
Q 038748 239 D-N-------VPAYDSYLITLLKG------CDGIYETVNSLKRMME--RGCNPGM------------------------- 277 (482)
Q Consensus 239 ~-~-------~~~~~~l~~~~~~~------~~~~~~a~~~~~~m~~--~~~~~~~------------------------- 277 (482)
- + ...|..-|+..... ...+..|.++++++.. .|+....
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 1 0 01111111111110 0234444444444432 1211110
Q ss_pred ------------------HHHHHHHH---------------------HHHhcCC-------hhHHHHHHHHhhcccCCCC
Q 038748 278 ------------------TFFKLAFE---------------------ECLTGQN-------LRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 278 ------------------~~~~~li~---------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~ 311 (482)
.+|...+. .+...|+ .+++..+++..+ ..-..-
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I-~~l~~~ 326 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI-EGLLKE 326 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH-HHHHHH
Confidence 11111111 1111122 223333333332 111111
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-ChhhHH
Q 038748 312 DTHMYNMMISLYCYS---NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-NHENCR 387 (482)
Q Consensus 312 ~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 387 (482)
+..+|..+.+.--.. +..+.....++++...-..--..+|...|..-.+..-++.|..+|.+..+.+..+ +...++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222222222111111 1245555666666554222233567778888888888999999999999988777 677788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIK 465 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~ 465 (482)
+++..|| .++.+-|.++|+.-.+. +.-+...-...+.-+...++-..|..+|++....++.|+. .+|..++..=..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 8888776 58899999999987654 2223344466777788889999999999999888766654 789999999999
Q ss_pred hccHHHHHHHHHHHh
Q 038748 466 ARKEAVYEELLKKCK 480 (482)
Q Consensus 466 ~g~~~~a~~~~~~m~ 480 (482)
-|+.+.+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.2e-06 Score=75.68 Aligned_cols=391 Identities=10% Similarity=0.032 Sum_probs=214.0
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
++.......|+.........--...|...+......+-++-+..+|++..+-.+ ..-+-.|..++..+++++|.+.+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---EAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---HHHHHHHHHHHhccchHHHHHHH
Confidence 333444444444443223333334455555555555555566666665555432 22444455566666666666666
Q ss_pred HHHHhc------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 159 DVMEQY------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI--KPD--NDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 159 ~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
...... ..+.+-..|.-+-+..++.-+.-....+=.-|+.|+ -+| ...|++|.+-|.+.|.+++|.++|+
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555421 112233445544444444433222222212222221 223 2468888888888999999998888
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccC---------------------CChHHHHHHHHHHHHcCC-----------CCC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGC---------------------DGIYETVNSLKRMMERGC-----------NPG 276 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~---------------------~~~~~a~~~~~~m~~~~~-----------~~~ 276 (482)
+..... . .+.-|..+...|..-. -+++-.+..|+.+...+. +-+
T Consensus 273 eai~~v---~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 273 EAIQTV---M-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHhh---e-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 877531 1 2333444444444320 011112222222222110 001
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD------THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--- 347 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--- 347 (482)
...|..- .-...|+..+-..++.+.++ .+.|. ...|..+.+.|-..|+.+.|..+|++..+...+--
T Consensus 349 V~eW~kR--V~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 349 VEEWHKR--VKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHHhh--hhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 1111111 11123556666666776652 22332 34688888999999999999999999887543311
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----------------ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-----------------NHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+|..-...-.+..+++.|+.+++......-.| +...|..+++.--..|-++....+|+.++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2345555555566788899999888776432111 22345556666667789999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH-h--ccHHHHHHHHHHHhh
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP-FALSKLKQILIK-A--RKEAVYEELLKKCKA 481 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~-~--g~~~~a~~~~~~m~~ 481 (482)
+..+....... .....+-.+.-++++.+++++-+..=..|+. ..|+..+.-+.+ - -+.+.|..+|++..+
T Consensus 505 dLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 505 DLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 87663222222 2222344566789999999886655444554 466666665543 2 256999999998754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=74.02 Aligned_cols=196 Identities=10% Similarity=-0.014 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
...|.-.|...|+...|.+-+++..+..+.+..+|..+...|.+.|+.+.|.+.|+... .+.|++..+.|..-..+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHH
Confidence 44445555666666666666666544445555566666666666666666666666554 345555555666555556
Q ss_pred ccCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 253 KGCDGIYETVNSLKRMMERG-CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.. |++++|.+.|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.
T Consensus 115 ~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQ-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hC-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchH
Confidence 65 56666666665555431 11123344455555555555555555555554111 1122334444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 375 (482)
|...++.....|. ++.......|+.--..|+.+.+-++=..+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555544443 455555555555555555555444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-06 Score=78.12 Aligned_cols=364 Identities=12% Similarity=0.006 Sum_probs=238.4
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh-CChh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--VLSLATFASVFSSYVVA-DRVK 152 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~-~~~~ 152 (482)
.+.|++..+.+.|+.... ..-...+.|+.+-..+...|.-..|+.+++...... +++...+-..-..|.+. +.++
T Consensus 334 ~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 457899999999997766 666678899999999999999999999999877766 44555555555555544 7777
Q ss_pred hHHHHHHHHHhc--CC--CCCHhhHHHHHHHHHhc-----------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 153 DAITTFDVMEQY--GC--KHDVFALNSLLSAICRD-----------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 153 ~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+++..-.+.... +. ......|..+.-+|... ....++.+.+++..+..+.|....-.+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 777777766652 11 12233444444444321 1245566677776543344444444455567788
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-CCC------------------CCHH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCN------------------PGMT 278 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-~~~------------------~~~~ 278 (482)
++++.|.+...+...- + .-++...|..+...+... +++.+|+.+.+..... |.. --..
T Consensus 492 R~l~sAl~~~~eaL~l-~-~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 492 RQLTSALDYAREALAL-N-RGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HhHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 9999999999888742 1 223567787777777777 9999999998876542 210 0011
Q ss_pred HHHHHHHHHHh---------c--------------CChhHHHHHHHHhh-------cccC---------CC--CC-----
Q 038748 279 FFKLAFEECLT---------G--------------QNLRGAEFIWGAMV-------GRIG---------FR--PD----- 312 (482)
Q Consensus 279 ~~~~li~~~~~---------~--------------g~~~~a~~~~~~~~-------~~~~---------~~--~~----- 312 (482)
|...++..+-. . ++..++.+....+. +..+ +. |+
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 22222222110 0 01111111111100 0011 01 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 313 -THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 313 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
...|......+.+.+..++|...+.+.... .......|......+...|.+++|.+.|......++. ++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 223455566777888888888777777664 2224455666666777889999999999998875433 5567889999
Q ss_pred HHhcCCChHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 392 VYMDSDDPYVAIK--FWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 392 ~~~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
++.+.|+..-|.+ ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999888888 999999866 345689999999999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-05 Score=70.62 Aligned_cols=266 Identities=13% Similarity=0.033 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH
Q 038748 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 277 (482)
..++-|+.....+.+++...|+.++|+..|++.. .++|++..........+... |+++....+...+.... .-+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~-~~ta 300 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKV-KYTA 300 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhh-hcch
Confidence 3455555555555555555555555555555553 34454443333333333334 55555555544443321 0111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
..|..-.......++++.|+.+-+..+ +.. +.+...|-.--..+...++.++|.-.|+...... +-+...|..|+.+
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I-~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCI-DSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHh-ccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 112122222333444455554444443 110 1122222222233444455555555554444321 1234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH-HHHh-cCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAV-RVYM-DSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHML 434 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~ 434 (482)
|...|.+.+|..+-++..+. +.-+..+.+.+. ..|. ...--++|.++++.-.. +.|+. ...+.+...+...|..
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCcc
Confidence 55555555554444433322 111222222221 1111 11123344444444333 22332 2223333444444555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 038748 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
++++.++++.... .||......|.+.+...+.+.+|.+.|
T Consensus 455 ~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 455 KDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred chHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555444322 244444444444444444444444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-06 Score=88.94 Aligned_cols=335 Identities=9% Similarity=-0.033 Sum_probs=205.0
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC-------CCC--HHHHHHHHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI-------KPD--NDTYAILLEGW 214 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~--~~~~~~l~~~~ 214 (482)
.....|+++.+..+++.+.......+..........+...|+++++..++....... .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344557777777766655322111223333444555667899999998887754311 111 12223334556
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCC----hhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDN----VPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCN-PGMTFFKLAFE 285 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~ 285 (482)
...|++++|...+++.... ....+ ..+.+.+...+... |++++|...+++.... |.. ....++..+..
T Consensus 463 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAE--LPLTWYYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 6899999999999987642 11111 12344455556667 9999999999887643 111 11234455667
Q ss_pred HHHhcCChhHHHHHHHHhhcc---cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHhhHHHHH
Q 038748 286 ECLTGQNLRGAEFIWGAMVGR---IGFR--P-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNG--AFP--DIQTYNILF 355 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~~~ll 355 (482)
.+...|+++.|...+.+.... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999988876421 2211 1 23344555666777899999999988775531 112 123344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcc-ChhhH-----HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHH
Q 038748 356 EFLVKGRKLWEASGLFNEMVKNENVL-NHENC-----RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVA 426 (482)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~ 426 (482)
..+...|+.++|...+.......... ....+ ...+..+...|+.+.|.+.+............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 66778999999999988875421110 11111 11224455688999999987775432111111 11345667
Q ss_pred HHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEK----GIQVT-PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
++...|++++|...+++.... |...+ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788899999999999987543 33222 24566677789999999999998887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=87.70 Aligned_cols=249 Identities=12% Similarity=0.095 Sum_probs=116.6
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ ..++..+..|.......+...+...++-+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 3444566666665444 22222122333444555666666665543 3444444455555555554444433344444
Q ss_pred HHHHHHhHHhcCCCCCChhhHHHHH-HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038748 224 KKTFGEMVIEVGWDPDNVPAYDSYL-ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGA 302 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (482)
..-+++.... ...+.+ .++..+. ..+... |++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 86 l~~l~~~~~~-~~~~~~-~~~~~~~A~i~~~~-~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 86 LEELKELLAD-QAGESN-EIVQLLAATILFHE-GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HHHHHHCCCT-S---CH-HHHHHHHHHHHCCC-CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHh-cccccc-HHHHHHHHHHHHHc-CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433333211 111111 1222222 222233 6666666665431 2344455556666666666666666666
Q ss_pred hhcccCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 303 MVGRIGFRPDTHMYNMMISLYC----YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 303 ~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
|. +. ..|.. ...+..++. ..+.+.+|.-+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+
T Consensus 157 ~~-~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQ-QI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HH-CC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HH-hc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 63 32 23322 222333222 223466666666665543 34555666666666666666666666666655443
Q ss_pred CccChhhHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 038748 379 NVLNHENCRAAVRVYMDSDDP-YVAIKFWKYMIE 411 (482)
Q Consensus 379 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 411 (482)
.. +..+...++.+....|+. +.+.+.+.++..
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 32 344444455555555554 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-07 Score=75.76 Aligned_cols=328 Identities=15% Similarity=0.095 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH-HHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA-ILLEGWE 215 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~ 215 (482)
-+.+++..+++..++..|++++..-.+... .+....+.|..+|....++..|-..|+++... .|...-|. .-...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHH
Confidence 377888888999999999999988877642 26777888999999999999999999998764 34444443 3356677
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH--HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL--ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+.+.+..|+++...|... | +...-..-+ ...... +++..+..++++.-..| +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~----~-~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----P-ALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC----H-HHHHHHHHHHHHHhccc-ccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 889999999999888631 2 121111112 222344 88888888888765433 333444444455689999
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHh-----------
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-------------PDIQ----------- 349 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~----------- 349 (482)
+.|.+-|+...+-.|..|- ..||.-+. ..+.|+++.|+++..++.+.|++ ||..
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999999867777664 45766554 55678999999999999999986 2211
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 350 ----TYNILFEFLVKGRKLWEASGLFNEMVKN-ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 350 ----~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.+|.-...+.+.|+++.|.+-+-.|--. .-..|++|...+.-.-+ .+++....+-+.-+.+.+..| ..||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP-~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP-PETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC-hHHHHHH
Confidence 1222233356778888888887777533 23446666655443322 345666666666666654433 3788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hccHHHHHHHHHHHh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGI-QVTPFALSKLKQILIK-ARKEAVYEELLKKCK 480 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 480 (482)
+-.||+..-++-|-.++.+-...-. -.+...|+ |+.++.- .-..+++.+-++++.
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8899999999999888876322211 12344443 3334332 334566665555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-06 Score=75.89 Aligned_cols=380 Identities=12% Similarity=0.031 Sum_probs=199.3
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|-.... -.++|...|..-..+|+..|++++|++=-.+-.+..+.-...|+....++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 457999999999998776 455689999999999999999999998888878877777788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH--hhCCCCCCH--------HHHHHHHHHHHhc--------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV--VDGRIKPDN--------DTYAILLEGWEKE-------- 217 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~--------~~~~~l~~~~~~~-------- 217 (482)
..|.+-.+... -+...++.+..++..... +.+.|.. +-.+...++ ..|..++..+-+.
T Consensus 91 ~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDP-SNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCC-chHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999887542 355667777777621110 1111111 111111111 2233333322211
Q ss_pred --CCHHHHHHHHHHhHH----hcCCCCCChhhHHHHHHHHHccCCChH----HHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 038748 218 --RDVANAKKTFGEMVI----EVGWDPDNVPAYDSYLITLLKGCDGIY----ETVNSLKRMME-RGCNPGMTFFKLAFEE 286 (482)
Q Consensus 218 --~~~~~a~~~~~~~~~----~~~~~p~~~~~~~~l~~~~~~~~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~li~~ 286 (482)
..+..+.-.+..... ..+..+. . .. ..+. .......++.+ .....-..-...+.++
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~-~-----------~~-~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEIL-A-----------SM-AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccC-C-----------CC-CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 001111111100000 0000000 0 00 0000 00000000000 0000011123344555
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-------HHHH
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF-------EFLV 359 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-------~~~~ 359 (482)
..+..++..+.+-+...+ . +.-+..-++....+|...|.+..+...-++..+.|.. ...-|+.+- .++.
T Consensus 234 aykkk~f~~a~q~y~~a~-e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKAL-E--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHhhhHHHHHHHHHHHH-h--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 555566666666666554 1 1223334444555566666666555555555544432 111222222 2344
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHH-------------------------HHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCR-------------------------AAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
+.++++.+..+|.+.......|+...-. .=...+.+.|++..|++.|.++++..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 4455666666666555443333222110 11234566777777777777777765
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+-|...|....-+|.+.|.+..|++-.+..++.+. +...-|..=..++....+|+.|.+.|++-.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777666665531 122333333445555556677776666544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-07 Score=83.59 Aligned_cols=251 Identities=12% Similarity=0.027 Sum_probs=159.7
Q ss_pred HHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 178 SAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+-+.-.|++..++.-.+ ... ....+......+.+++...|+++.++ .++.. +-.| .......+.. +....+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~~~~-~l~av~~la~-y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--SSSP-ELQAVRLLAE-YLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--TSSC-CCHHHHHHHH-HHCTST
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--CCCh-hHHHHHHHHH-HHhCcc
Confidence 44556688888876555 322 22234556667888999999877544 34432 2244 3445544443 333325
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
+-+.++.-+++........ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665554443332 2333333335566789999998887543 3566677788899999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
++.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+
T Consensus 154 l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999875 233 444445555433 34689999999998654 567888899999999999999999999998776
Q ss_pred cCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcC
Q 038748 412 NHCSDLSETGNLLVAGLCDMHML-PEAVKYAKGMAEKG 448 (482)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~ 448 (482)
.+ +-+..+...++.+....|+. +.+.+++.+++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 54 23446666677777777777 67788888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=82.86 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=127.3
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+.+.|++.+|.-.|+......+-+...|..|.......++-..|+..+.+.. .++|++..+.-.|...|... |.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl---~LdP~NleaLmaLAVSytNe-g~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL---ELDPTNLEALMALAVSYTNE-GLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH---hcCCccHHHHHHHHHHHhhh-hhHH
Confidence 4566777777777777555556677777777777777777777777777775 56777777777777777777 7777
Q ss_pred HHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 260 ETVNSLKRMMERGCNP--------GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.|+..++..+....+- +...-.. ..+.....+....++|-++....+..+|..++..|--.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 7777777765532110 0000000 01111122233444444444444434455555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|...|+........ |..+||.|-..++...+.++|...|.+.++..+.--..-| .|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry-NlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY-NLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh-hhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666666653211 4455666666666666666666666666653222111222 34445566666666666555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-05 Score=70.42 Aligned_cols=192 Identities=13% Similarity=0.099 Sum_probs=129.7
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH--HHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS--LLSAI 180 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~ 180 (482)
..-+=+..+...|++++|.+....+...++.+...+..-+-+.++.+.|++|+.+.+.-.. ..+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3334467778899999999999999999887888899999999999999999966544321 112222 23445
Q ss_pred H--hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC------------------
Q 038748 181 C--RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN------------------ 240 (482)
Q Consensus 181 ~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------------------ 240 (482)
| +.+..|+|+..++... +.+..+...-...+.+.|++++|+++|+.+.+. +..-.+
T Consensus 88 c~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHH
Confidence 4 7799999998888333 334557777788899999999999999999753 331100
Q ss_pred --------hhhHHH---HHHHHHccCCChHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHhcCChhH
Q 038748 241 --------VPAYDS---YLITLLKGCDGIYETVNSLKRMMERG-------CNPGM-------TFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 241 --------~~~~~~---l~~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~ 295 (482)
..+|.. ....++.. |++.+|+++++...+.+ -.-+. ..-..+.-.+...|+.++
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 012222 23344455 88888888888773321 11111 112334455667888888
Q ss_pred HHHHHHHhhc
Q 038748 296 AEFIWGAMVG 305 (482)
Q Consensus 296 a~~~~~~~~~ 305 (482)
|..++...++
T Consensus 243 a~~iy~~~i~ 252 (652)
T KOG2376|consen 243 ASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHHH
Confidence 8888888863
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-06 Score=86.10 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=130.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGM 277 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 277 (482)
.+.+...|-..|......+++++|.+++++.+..-++.-. -...|.++++.-..- |.-+...++|+++.+.. -.-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHhc--chH
Confidence 3445566777777777777777777777777642211110 112455555544444 66666777777776642 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD---IQTYNIL 354 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l 354 (482)
..|..|...|.+.+.+++|.++++.|.++.+ -...+|...+..+.+.++-++|..++.+..+. -|. .......
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHH
Confidence 4566677777777777777777777776555 44556777777777777777777777766664 222 2233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL 417 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 417 (482)
+..-.+.|+.+++..+|+..+...++ -...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 44455667777777777777665443 345677777777777777777777777776666543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-05 Score=66.32 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHH---HHHHHhcCChHhHHHHHHHhhCCCCCCHHHH-HH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL---LSAICRDGKTIDAWQFLRVVDGRIKPDNDTY-AI 209 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 209 (482)
+..-..-+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.=+..+.+ .+||-..- ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-lKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-cCccHHHHHHH
Confidence 4444556777888889999999999988873 44445444 3567788888888877776543 45664332 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhH------------HHHHHHHHccCCChHHHHHHHHHHHHcCCC
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAY------------DSYLITLLKGCDGIYETVNSLKRMMERGCN 274 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~------------~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~ 274 (482)
-...+.+.|.++.|..=|+.++.. .|.+ ..++ ...+..+... |+...|++....+++.. +
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcC-c
Confidence 345678899999999999998854 4421 1111 1223344444 77777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH---
Q 038748 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTY--- 351 (482)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--- 351 (482)
-|...+..-..+|...|.+..|..-++... +.. .-+..++.-+-..+...|+.+.++..+++..+. .||...+
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 356666666777777788777777666663 222 223445555566677777777777777777663 4554321
Q ss_pred -HH---HH------HHHHhcCCHHHHHHHHHHHHhCCCccChhh---HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-
Q 038748 352 -NI---LF------EFLVKGRKLWEASGLFNEMVKNENVLNHEN---CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL- 417 (482)
Q Consensus 352 -~~---ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~- 417 (482)
.. +. ......++|.++.+-.+...+......... +..+-.++...|++.+|+....+..+ +.||
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~d 340 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchH
Confidence 11 11 123345666666666666666543322233 33445566667777777777777766 3344
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 418 SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
..++.--..+|.-...+++|+.-|+...+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5666666677777777777777777776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-09 Score=59.36 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=21.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 413 HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 413 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-05 Score=67.89 Aligned_cols=151 Identities=12% Similarity=0.049 Sum_probs=119.9
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
.+....+++++.......|+. +|..+|....+..-+..|..+|.+..+.+..+ ++..++++|..+| .++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 556667777776455555554 57778888888888999999999999998877 6777888888766 46788999999
Q ss_pred HHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS--ETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+--.+.- .-+..-....++-+...++-..+..+|+.....++.|+. ..|..++.-=..-|+...+.++-+++..
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9866542 224445567888888999999999999999988776665 7899999988899999999999888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-05 Score=80.70 Aligned_cols=336 Identities=10% Similarity=-0.058 Sum_probs=206.3
Q ss_pred hhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC------CCCH--hhHHHHHHHHHh
Q 038748 112 GKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGC------KHDV--FALNSLLSAICR 182 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll~~~~~ 182 (482)
...|+++.+...++.+..... .+..........+...|+++++..++......-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344556655555555432211 1222233445556677999999999987754311 1111 122223345567
Q ss_pred cCChHhHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-CCCC--ChhhHHHHHHHHHcc
Q 038748 183 DGKTIDAWQFLRVVDGRIK-PD----NDTYAILLEGWEKERDVANAKKTFGEMVIEVG-WDPD--NVPAYDSYLITLLKG 254 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~--~~~~~~~l~~~~~~~ 254 (482)
.|++++|...++......+ .+ ....+.+...+...|++++|...+++...... ..+. ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 8999999999988543211 12 23456666778889999999999988764211 1110 122344556667777
Q ss_pred CCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCCCHHHHHHHHHHHH
Q 038748 255 CDGIYETVNSLKRMMER----GCN--P-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRPDTHMYNMMISLYC 324 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~ 324 (482)
|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... .+.......+..+...+.
T Consensus 545 -G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 545 -GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred -CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998876552 221 1 2233445556677789999999998876521 111112334455666788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhc
Q 038748 325 YSNETGAAMKLLDEMVYNGAFP-DIQTY-----NILFEFLVKGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMD 395 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 395 (482)
..|++++|...+.......... ....+ ...+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998875421110 11111 11224445688999999998776542211111 113456777889
Q ss_pred CCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 396 SDDPYVAIKFWKYMIEN----HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|++++|...+++.... |..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999987743 332222 355666778889999999999999987654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-05 Score=66.22 Aligned_cols=300 Identities=12% Similarity=0.054 Sum_probs=176.9
Q ss_pred CCHHHHHHHHH-----hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 65 VSQETVEQVLK-----FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 65 ~~~~~~~~ll~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
.++..+...+. ...|+..+|+.-|.-... +.+.+=.++-.-...|...|+...|+.=+.+..+..+.-..+--
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 44455555444 346777788888776655 33333334444456777778888888777777776542222222
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCC--Hhh------------HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFA------------LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 205 (482)
.-...+.+.|.+++|..=|+...+....-+ ... ....+..+...|+...|++....+.+-.+.|..
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 334456778888888888888877542111 111 122334455668888888888887776777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA-- 283 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-- 283 (482)
.|..-..+|...|++..|+.=+... ..+..|++..+..+-..++.. |+.+.++...++-.+. .||...+-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~a---skLs~DnTe~~ykis~L~Y~v-gd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQA---SKLSQDNTEGHYKISQLLYTV-GDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH---HhccccchHHHHHHHHHHHhh-hhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 8888888888888888887665555 355667777777777778888 8888888888777663 4554322111
Q ss_pred -----------HHHHHhcCChhHHHHHHHHhhcccCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 284 -----------FEECLTGQNLRGAEFIWGAMVGRIGFRPD-----THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 284 -----------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+......+++.++.+..+..++. .|. ...+..+-.++...+++.+|++.-.+..+. .||
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~ 339 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--Cch
Confidence 11122334444444444444311 222 112223334444455566666655555543 233
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 348 -IQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 348 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
..++.--..+|.-...++.|+.=|+...+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 445555555555555566666666655553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=80.92 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhH
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 189 (482)
-+.+.|++.+|.-.|+.....++....+|..|....+..++-..|+..+++..+... -+....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 345667777777777777777777777777777777777777777777777776532 2455566666666777776677
Q ss_pred HHHHHHh-hCC-----C-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHH
Q 038748 190 WQFLRVV-DGR-----I-K--PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 190 ~~~~~~~-~~~-----~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 260 (482)
.+.++.. ... . . ++...-.. ..+.....+....++|-++....+..+ +......|-..|... |.++.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~-DpdvQ~~LGVLy~ls-~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI-DPDVQSGLGVLYNLS-GEFDR 448 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC-ChhHHhhhHHHHhcc-hHHHH
Confidence 6666552 210 0 0 00000000 122222334444555555544433212 233555555555555 77777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
|...|+..+... +-|...||.+...++...+..+|..-|.+.+ .+.|+ +.+...|.-.|...|.+++|.+.|-..
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777777766642 2345567777777777777777777777665 33554 334445555666777777776666443
Q ss_pred H---HC------CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038748 340 V---YN------GAFPDIQTYNILFEFLVKGRKLWEAS 368 (482)
Q Consensus 340 ~---~~------g~~p~~~~~~~ll~~~~~~g~~~~a~ 368 (482)
. +. +..++...|..|=.++...++.+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 21 12223445555555555555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.2e-09 Score=57.58 Aligned_cols=32 Identities=41% Similarity=0.758 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEM 339 (482)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 339 (482)
|+.||..+||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.0001 Score=70.96 Aligned_cols=355 Identities=14% Similarity=0.145 Sum_probs=196.3
Q ss_pred CCHHHHHHHHH----hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--------C
Q 038748 65 VSQETVEQVLK----FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--------V 132 (482)
Q Consensus 65 ~~~~~~~~ll~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~ 132 (482)
-++.+--++|. ...|+-+.|.+-.+.++. ...|..+.+.|.+.++++-|.-.+-.|.... .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 45556666666 336888888877776654 4789999999999988888877777665421 0
Q ss_pred C-CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 133 L-SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 133 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
. +..+=..+.-...+.|.+++|..+|.+.++. ..|=..|-..|.+++|.++-+.=.. +. -..||....
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYA 865 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHH
Confidence 0 1122222333345678888888888887763 2344556677888888877654322 11 123555555
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
.-+-..+|++.|++.|++... ..++.. . .++ .++....++.+.+. |...|.-....+-..|
T Consensus 866 ~~Lear~Di~~AleyyEK~~~---------hafev~-r-mL~--e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV---------HAFEVF-R-MLK--EYPKQIEQYVRRKR------DESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC---------hHHHHH-H-HHH--hChHHHHHHHHhcc------chHHHHHHHHHHhccc
Confidence 666667888888888876421 111110 0 000 22222333333322 3344555555556677
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
+++.|+.+|.... + |-++++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|
T Consensus 927 emdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777777777662 2 555666667777777776655432 24455555667777777777777777
Q ss_pred HHHHhCC--Ccc--ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH---
Q 038748 372 NEMVKNE--NVL--NHENCRAAVRVYMD--SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK--- 442 (482)
Q Consensus 372 ~~~~~~~--~~~--~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--- 442 (482)
.+...-. +.. ....-..|...+.. ..+.-.|-++|++. |. -+..-+..|-++|.+.+|+++.=
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 6654310 000 00000011111111 12233333444332 21 12233445667777777666421
Q ss_pred -----HHHH--cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 443 -----GMAE--KGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 443 -----~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+++. .....|+...+.....+....++++|.+++-..+
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1222 2333466777777777777777777777765543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-06 Score=74.76 Aligned_cols=187 Identities=9% Similarity=-0.070 Sum_probs=119.0
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH--h
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--F 171 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 171 (482)
.......+..+...+...|+++.|...|+++....+.+. .++..+..++...|++++|...++.+.+....... .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345667788888888899999999999999888766433 56777888899999999999999999875422111 1
Q ss_pred hHHHHHHHHHhc--------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 172 ALNSLLSAICRD--------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 172 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
++..+..++... |+.+.|.+.|+.+....+.+...+..+..... . ..... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~----------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA----------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH----------HH
Confidence 344444445443 66777888887765443333333322211100 0 00000 01
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGC--NPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
...+...+... |++.+|+..++...+... +.....+..+..++.+.|++++|..+++.+.
T Consensus 169 ~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 169 ELYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344556666 888888888887776521 2234567777788888888888888777774
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.0002 Score=70.57 Aligned_cols=319 Identities=9% Similarity=0.069 Sum_probs=183.9
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhH
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL 173 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 173 (482)
-..|++.-+.-+.++...+-+.+.+++++.+.-.+. .+...-|.|+-...+ -+.....+..+++..... |+
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~---- 1053 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD---- 1053 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh----
Confidence 345677777788888888888888888888876653 233444555544444 344556666666654321 22
Q ss_pred HHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 174 NSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
+...+...+-+++|..+|+... .+....+.|+. .-+.++.|.++-++.. ....|..+..+-++
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHh
Confidence 3344566677788888887654 23444444443 2356666666555442 23467777777777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 333 (482)
. +.+.+|++.|-+. -|+..|..+++.+.+.|.+++..+.+.... +..-+|.+. +.||-+|++.++..+.+
T Consensus 1117 ~-~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1117 G-GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELE 1186 (1666)
T ss_pred c-CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHH
Confidence 7 7777777766332 255667777888888888887777776653 444444443 56777777777766654
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHH------
Q 038748 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWK------ 407 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------ 407 (482)
+++ .-|+......+-.-|...|.++.|.-+|... ..|..|...+...|+++.|...-+
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 433 1355555556666666666666655554432 123333333333444433332211
Q ss_pred ------------------HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHh
Q 038748 408 ------------------YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ-VTPFALSKLKQILIKA 466 (482)
Q Consensus 408 ------------------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~ 466 (482)
+|...++.....-..-++.-|-..|-+++.+.+++... |++ .....|+-|.-.|.+-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc
Confidence 11111222222344566777777777777777776654 322 2234555555555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00019 Score=70.72 Aligned_cols=331 Identities=11% Similarity=0.072 Sum_probs=182.4
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASV 141 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 141 (482)
-+|..+....+ ...+-+.+-+++++.+.-+. .+.-+...-|.+|-...+. +..+..+.++++..-+.|+ +
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~------i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD------I 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh------H
Confidence 44555555555 34566777788887655442 3444455556666555554 3445556666655554443 2
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcC---------------------CCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYG---------------------CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
...+...+-+++|..+|+...-.+ -.-.+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 334445555666666665432100 0012234455555555555555554433322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF 280 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 280 (482)
.|+..|..+++...+.|.|++-.+.+....++ .-.|. .-..++.+|.+. ++..+..+++ .-|+....
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~---id~eLi~AyAkt-~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY---IDSELIFAYAKT-NRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc---chHHHHHHHHHh-chHHHHHHHh-------cCCCchhH
Confidence 24455566666666666666655555444432 33332 334455555555 5555544443 23555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK 360 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 360 (482)
..+.+-|...|.++.|.-+|..+ .-|..|...+...|+++.|...-++. -+..||..+-.+|..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence 55556666666666655555443 24666777777777777776554433 356788888888877
Q ss_pred cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038748 361 GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (482)
.+.+.-| .|-..++.....-...++..|-..|-+++.+.+++...... .-....|+-|.-.|.+ =++++..+-
T Consensus 1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk-ykp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK-YKPEKMMEH 1334 (1666)
T ss_pred hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 7666443 34344455566667789999999999999988887654211 1122456666666655 234444443
Q ss_pred HH
Q 038748 441 AK 442 (482)
Q Consensus 441 ~~ 442 (482)
++
T Consensus 1335 l~ 1336 (1666)
T KOG0985|consen 1335 LK 1336 (1666)
T ss_pred HH
Confidence 33
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-06 Score=82.08 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=184.1
Q ss_pred CCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-----GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP 311 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 311 (482)
.|++...|-..|...+.. ++.++|.++.++.... +.+ -...|.++++.-..-|.-+...++|+++. +. .-
T Consensus 1454 sPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qy--cd 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLEL-SEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QY--CD 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hh--cc
Confidence 677788898999999999 9999999999998764 211 13457777777777888889999999985 32 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cChhhHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAV 390 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li 390 (482)
.-.+|..|...|.+.+.+++|-++++.|.++ ..-....|...+..+.+..+-+.|..++++.++.-.+ -......-.+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 3457899999999999999999999999986 3346678999999999999999999999999875322 1233455566
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhcc
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKARK 468 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~ 468 (482)
..-.+.|+.+.+..+|+...... +--...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...+..=.+.|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 77778999999999999988653 223479999999999999999999999999999987765 456667766666677
Q ss_pred HHHHHHHH
Q 038748 469 EAVYEELL 476 (482)
Q Consensus 469 ~~~a~~~~ 476 (482)
-+.++.+=
T Consensus 1687 e~~vE~VK 1694 (1710)
T KOG1070|consen 1687 EKNVEYVK 1694 (1710)
T ss_pred hhhHHHHH
Confidence 65554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-05 Score=68.52 Aligned_cols=210 Identities=7% Similarity=-0.023 Sum_probs=110.8
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh-
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT- 186 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~- 186 (482)
..+...+..++|+.+.+.+.+.++.+..+|+.--.++...| ++++++..++.+.+.+.+ +..+|+..-..+.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 34444556666666666666666655555555555555555 456666666666665432 334455444444444442
Q ss_pred -HhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc--CCC----hH
Q 038748 187 -IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG--CDG----IY 259 (482)
Q Consensus 187 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~----~~ 259 (482)
+++..+++.+.+..+.|..+|+....++...|+++++++.++++.+. .|.+..+|+.....+... .++ .+
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHH
Confidence 45555665555555566666666666666667777777777766633 455555565554443322 011 13
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY 325 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 325 (482)
+.++...+++... +-|...|+-+...+... +...+|.+.+.+.. +.+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~-~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL-SKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh-ccc-CCcHHHHHHHHHHHHh
Confidence 4444444444432 23444555555555442 23344555555554 211 2345555666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-05 Score=75.35 Aligned_cols=186 Identities=9% Similarity=-0.068 Sum_probs=133.2
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.+...|+..|-...+ -...=...|..|...|...-+...|.+.|+...+.+..+........+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 445566666655444 222224678999999998888999999999999988888888999999999999999999984
Q ss_pred HHHHhcCC-CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 159 DVMEQYGC-KHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
-..-+... ..-...|..+--.|.+.++...|..-|+....-.+.|...|..+..+|..+|.+..|.++|.+.. -+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~Lr 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLR 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcC
Confidence 33322210 01112233333445677888888888887666667788999999999999999999999998874 567
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
|++...-.-.....+.. |.+.+++..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~-GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDN-GKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 76544333333444555 888888888887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.6e-05 Score=67.76 Aligned_cols=209 Identities=8% Similarity=-0.004 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG 290 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 290 (482)
..+...+..++|+.+..+++ .+.|++..+|+.--..+... + ++++++..++++.+... -+..+|+.-.-.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI---~lnP~~ytaW~~R~~iL~~L-~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVI---RLNPGNYTVWHFRRLCLEAL-DADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33444556666666666665 33565555555554444444 4 45666666666665432 2233344333333334
Q ss_pred CCh--hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---CC--
Q 038748 291 QNL--RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG---RK-- 363 (482)
Q Consensus 291 g~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~-- 363 (482)
|+. +++..+++.+++.. +-+..+|+....++...|+++++++.++++.+.+.. +...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 432 45566666665221 335666666666666677777777777777776543 445555444444333 22
Q ss_pred --HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 364 --LWEASGLFNEMVKNENVLNHENCRAAVRVYMDS----DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 364 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
.++..++..+++...+. |...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 23556666666665443 556666666666552 33455767766665533 2334556666676664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.6e-05 Score=70.57 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..-..+...+...|-...|..+|++.. .|..++.+|+..|+..+|..+..+..+ -+||...|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 344566777888899999999998764 467788999999999999988777544 5889999999999988
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (482)
...-+++|.++++....+ +-..+....... ++++++.+.|+.-.+.. +.-..+|-....+..+.++++.
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~-~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSN-KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccc-hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 888899999998876432 222223333445 89999999998766542 2345677777778888999999
Q ss_pred HHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 296 AEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
|.+.|...+ ...|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +...|-.-+....+.|.+++|.+.+..+
T Consensus 538 av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999886 33554 678999999999999999999999999988743 4456666667778999999999999888
Q ss_pred HhC
Q 038748 375 VKN 377 (482)
Q Consensus 375 ~~~ 377 (482)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.7e-06 Score=71.34 Aligned_cols=187 Identities=14% Similarity=0.017 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI--QTYN 352 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~ 352 (482)
....+......+...|+++.|...|+++++...-.|. ..++..+..+|...|++++|...++++.+....... ..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666666777777777777777777532211111 135566666777777777777777777664221111 1233
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 353 ILFEFLVKG--------RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 353 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.+..++... |+.++|.+.|+.+.+.... +...+..+..... ... ... .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 333344333 5566666666666654322 1111111111000 000 000 011234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGI--QVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667888999999999999876642 12346778888899999999999998888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-06 Score=78.19 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=49.5
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKLWEAS 368 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 368 (482)
.++++++.+.|+.-.+.. +.-..+|-.+-.+..+.++++.|.+.|.....- .|| ...||.+-.+|.+.|+..+|.
T Consensus 498 ~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred chhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 344444444444433221 112233444444444444444444444444432 222 233444444444444444444
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+++..+.+ .-+...|...+....+.|.+++|.+.+.++.
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 4444444444 2233334444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-05 Score=66.41 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 132 VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 132 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+-+... ..+-..+.-.|+-+....+........ .-|....+.+.....+.|++..|...+.+....-++|..+|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 334444 555666667777777777776654432 235566667888888888888888888888777788888888888
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
-+|.+.|+++.|..-|.+..+ +.|.+....+.+...+.-. |+.+.|..++......+ .-|...-..+.......|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 888888888888888888763 4555556777887777777 88888888888877654 235666667777778888
Q ss_pred ChhHHHHHHHHh
Q 038748 292 NLRGAEFIWGAM 303 (482)
Q Consensus 292 ~~~~a~~~~~~~ 303 (482)
+++.|+++...-
T Consensus 217 ~~~~A~~i~~~e 228 (257)
T COG5010 217 DFREAEDIAVQE 228 (257)
T ss_pred ChHHHHhhcccc
Confidence 888888776554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-05 Score=77.50 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=128.3
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
.+..++..+-.|.......|.+++|..+++...+..+.+......+...+.+.+++++|+..++....... -+....+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHH
Confidence 56778999999999999999999999999999999988999999999999999999999999999998753 35666788
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+..++.+.|++++|..+|+++....+-+..++..+..++.+.|+.++|...|+..... ..| ....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~-~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD-GARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc-chHHHHHHH
Confidence 8888999999999999999987655666899999999999999999999999999753 233 334555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-05 Score=67.21 Aligned_cols=151 Identities=11% Similarity=-0.034 Sum_probs=118.8
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+.+.+..+...... ..+.|....+..+....+.|++..|+..|.+.....+++..+|+.+.-+|.+.|+++.|..
T Consensus 78 ~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence 35667777766665444 5566677777788888888999999999998888888888889988889999999999988
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++........-|..+-..+.......|++++|+++...-
T Consensus 156 ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 156 AYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888887643 356677888888888888888888888866555667778888888888888888888876543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-05 Score=62.18 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=54.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
-...|+..|++++|++...... +......-...+.+. .+++-|.+.+++|.+.. +..|.+.+..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~-~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKM-HRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 3444555555555555554321 222222223334444 55555555555555432 33444444444332
Q ss_pred ----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 290 ----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 290 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
.+.+.+|.-+|++|- .+..|+..+.+....++...|++++|..+++....+
T Consensus 182 la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 233445555555552 123445555555555555555555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-05 Score=71.09 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
..+.+|+.+++.+..... -..-|..+..-|...|+++.|+++|.+. + .++--|..|.+.|+|+.|.++
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccHHHHHHH
Confidence 344444444444443321 1222334444444445555555444432 0 123334445555555554444
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 415 (482)
-.+.. |.......|-.-..-+-..|++.+|.++|-.+. .|+ ..|..|-+.|..+..+++...- .
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh-----C
Confidence 33322 122222333333333444444444444443221 122 2344444555555444444332 1
Q ss_pred CCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 038748 416 DLS--ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 416 p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
|+. .|.-.+..-|-..|+...|..-|-+.. -|.+.++.|...+.|++|-++-
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 221 344445555666677766666554332 2444555666666666665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=66.34 Aligned_cols=348 Identities=13% Similarity=0.017 Sum_probs=213.0
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTI 187 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~ 187 (482)
.+....|+++.|+.+|.+.....+++...|..-..+|+..|++++|++=-.+-++. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999999999899999999999999999999999877777764 455 346888888888899999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--hHHhcCCCCC-----ChhhHHHHHHHHHccCCChHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE--MVIEVGWDPD-----NVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~~ 260 (482)
+|..-|.+-....+.|...++-+..++... .. +.+.|.. |..+..-.|. ....|..++..+-+....+..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999986555667777888887777211 11 1111110 0000000110 001122222222111100000
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CC--------hh----HHHHHHHHhhcccCCCCCHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTG-----------QN--------LR----GAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~--------~~----~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
- +. +. .++.+.... |. +. .......++.+......-..-.-
T Consensus 165 ~-----------l~-d~----r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 165 Y-----------LN-DP----RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred c-----------cc-cH----HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 0 00 00 111111110 00 00 00000000000000000112245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH-------HH
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA-------AV 390 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li 390 (482)
.+..+..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-...++.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56677777888999999999888864 35555677777888888888887777776666543 2222332 34
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCChhhH-------------------------HHHHHHHHhcCChhHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDLSETG-------------------------NLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+|.+.++++.|.+.|.+.......|+..+= ..-.+.+.+.|++..|++.|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4677778889999988877654444443221 111445678899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 446 EKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
... +-|...|..-.-+|.+.|.+..|+.=.++.++
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 887 45778899999999999999999886665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-05 Score=67.82 Aligned_cols=139 Identities=15% Similarity=0.099 Sum_probs=90.1
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-MTFFKLAFEECLTGQ 291 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g 291 (482)
.+...|++++|+..++.+... .|+|...+......+... ++..+|.+.++++... .|+ ......+..++.+.|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEA-NKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 345567777777777777643 676666666666666666 7777777777777764 344 444455667777777
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++.+|..+++... ...+-|...|..|..+|...|+..++..-..++.. ..|+++.|...+
T Consensus 389 ~~~eai~~L~~~~--~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l 448 (484)
T COG4783 389 KPQEAIRILNRYL--FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFL 448 (484)
T ss_pred ChHHHHHHHHHHh--hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHH
Confidence 7777777777764 23355666777777777777777777666555432 345666666666
Q ss_pred HHHHhC
Q 038748 372 NEMVKN 377 (482)
Q Consensus 372 ~~~~~~ 377 (482)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00013 Score=60.96 Aligned_cols=156 Identities=13% Similarity=-0.004 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
...-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv 180 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV 180 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence 3333455666666666666665421 1222222233345556666666666666653 24455555555544
Q ss_pred h----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-
Q 038748 360 K----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHML- 434 (482)
Q Consensus 360 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 434 (482)
+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+.. -+..+...+|.+-...|..
T Consensus 181 ~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCCh
Confidence 3 33566666667666442 455666666666666666777777777766665542 2233333333332333333
Q ss_pred hHHHHHHHHHHHc
Q 038748 435 PEAVKYAKGMAEK 447 (482)
Q Consensus 435 ~~A~~~~~~m~~~ 447 (482)
+-..+.+.+++..
T Consensus 259 ~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 259 EVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 3344555555433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8e-05 Score=74.64 Aligned_cols=220 Identities=11% Similarity=0.076 Sum_probs=116.7
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+...+..|+..+...+++++|.++.+......+-....|..+...+.+.++.+.+..+ .+. +..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~---------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFS---------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhcc----------
Confidence 3445666667776777777777766654433333444444444455566665555444 222 1111
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
.. .++.-+..+...|...+ -+...+..+..+|-+.|+.+++..++++++ +.. +-|..+.|.+...|+.. +
T Consensus 95 ----~~-~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 95 ----QN-LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ----cc-cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-h
Confidence 11 33333333333344322 234466667777777788888888888776 333 44566777777777777 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------ccChhhHHHH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-------------------VLNHENCRAA 389 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~l 389 (482)
.++|++++.+.... +...+++..+.++|.++..... .--..++-.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 77777777766553 3333444445555554444321 1122233334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC 429 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (482)
-..|-..++++++..+++.+.+..- -|.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 4455555556666666666655432 12334444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=68.91 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=117.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 212 EGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
.+......|.+|+.+++.+..+ .. ....|..+...|... |+++.|.++|.+. ..++-.|.+|.+.|
T Consensus 740 eaai~akew~kai~ildniqdq-k~---~s~yy~~iadhyan~-~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ-KT---ASGYYGEIADHYANK-GDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh-cc---ccccchHHHHHhccc-hhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 3344556666677776666532 11 122455555666666 8888887777542 23455677788888
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++..|.++-.+.. |-+.....|-+-..-+-+.|++.+|+++|-.+.+ |+ ..|..|-+.|..+..+.+.
T Consensus 806 kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHH
Confidence 8888777766553 4444556666666666677777777777644332 33 2456677777777777766
Q ss_pred HHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 372 NEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
++-.... -..|...+..-|...|+...|.+.|-+.. -|..-++.|-..+.|++|.++-+
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6543222 22345556666777777777777664432 34555666777777777776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-05 Score=74.08 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH------------------HHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT------------------FDV 160 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~~ 160 (482)
.+...+..|+..+...+++++|.++.+...+..+-....|..+...+.+.++..++..+ ...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 34566677777776777777777777766555543333444443355555554444443 112
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 161 MEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 161 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|.+.+ -+...+-.+..+|-+.|+.++|..+++++..-.+-|+.+.|.+...|... ++++|+.++.+..
T Consensus 109 i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 109 ILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 22211 11234444555555555555555555554443345555555555555555 5555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0015 Score=63.93 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=143.8
Q ss_pred HHHHHHHhhCCCCc----cHHHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhC
Q 038748 39 IKTLCEIIANTPSP----TVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKN 114 (482)
Q Consensus 39 ~~~~~~~l~~~~~~----~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 114 (482)
++.+++.+...+-. ...+.+++.+..+-...+..+.....|..++|..+++.... -...|..+...+-..|.+.
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~--~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG--LKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc--CCCCchHHHHHHHHHHHHH
Confidence 44555555544332 36666777777777777777777778899999988887655 2334888899999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-C--------
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-K-------- 185 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~-------- 185 (482)
++.++|..+|+...+..+- ..-...+..+|++.+++.+-.++--++-+. ..-..+.|=++++.....- .
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999998887654 777777888888888776655544444432 2224455444555554331 1
Q ss_pred -hHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 186 -TIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 186 -~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
..-|...++.+.. |--.+..=...-...+...|++++|.+++..-... ...+.+...-+.-+..+... +++.+..
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l-~~w~~l~ 246 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLL-NRWQELF 246 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHh-cChHHHH
Confidence 1224444444322 21122222333344556788899999988443322 33333333334445555555 8899999
Q ss_pred HHHHHHHHcC
Q 038748 263 NSLKRMMERG 272 (482)
Q Consensus 263 ~~~~~m~~~~ 272 (482)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9988888876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6e-05 Score=74.65 Aligned_cols=131 Identities=7% Similarity=-0.009 Sum_probs=79.1
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+...+-.|.....+.|..++|+.+++.+.+-.+-+......+..++.+.+++++|+..+++.. ...|++......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHHHH
Confidence 455555566666666666666666666555445555556666666666666666666666664 33566666666666
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.++... |++++|..+|+++...+ +-+..++..+..++...|+.++|...|+..+
T Consensus 162 ~~l~~~-g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEI-GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHh-cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666 66666666666666522 2235556666666666666666666666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.001 Score=64.42 Aligned_cols=186 Identities=7% Similarity=-0.000 Sum_probs=126.0
Q ss_pred HhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 111 LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
....|.+++|..+|.+.++ |..|=..|-..|.|++|.++-+.-.+-.+ ..||..-..-+-..+|.+.|+
T Consensus 810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 3457889999999999887 44555667778999999998876444222 345655666666778999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
+.|++-.. +--.++..|. .++...+.+.+.+. +. +.......|+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~---hafev~rmL~------e~p~~~e~Yv~~~~--------d~-~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 879 EYYEKAGV---HAFEVFRMLK------EYPKQIEQYVRRKR--------DE-SLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhcCC---hHHHHHHHHH------hChHHHHHHHHhcc--------ch-HHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 99986542 1112222221 23333344444443 12 2223344555555999999999987654
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
|-.+++..|-.|+.++|.++-++- -|......|.+.|-..|++.+|..+|.+...
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 556777888889999998887654 2666777888999999999999988876643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=62.51 Aligned_cols=93 Identities=5% Similarity=-0.115 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+..+...+...|++++|...|+......+.+..+|..+..++...|++++|...|+.....+. .+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 333445555555555565555555555555555555555555555555555555555555432 2445555555555555
Q ss_pred CChHhHHHHHHHhh
Q 038748 184 GKTIDAWQFLRVVD 197 (482)
Q Consensus 184 g~~~~a~~~~~~~~ 197 (482)
|++++|...|+...
T Consensus 106 g~~~eAi~~~~~Al 119 (144)
T PRK15359 106 GEPGLAREAFQTAI 119 (144)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=66.24 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-HhcCC--hHhHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI-CRDGK--TIDAW 190 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~ 190 (482)
.++.+++...++...+.++.+...|..+...|...|++++|...|+...+... -+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45556666666776666666777777777777777777777777777766542 2555566665543 45555 36777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+++++.....+.+..++..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777776555556666777777777777777777777777653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0024 Score=62.59 Aligned_cols=368 Identities=12% Similarity=0.021 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHH---hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH
Q 038748 64 RVSQETVEQVLK---FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140 (482)
Q Consensus 64 ~~~~~~~~~ll~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (482)
.++......++. ...++.+.|..+++.+..+ -|+.+....+..+|.+.+++.+-.+.--++.+.-+-+...+=+
T Consensus 73 ~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 73 KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 344444555555 3368889999999987763 3557788888888999888776555544544443334444444
Q ss_pred HHHHHHhhC----------ChhhHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hh-CCCCCCHHHH
Q 038748 141 VFSSYVVAD----------RVKDAITTFDVMEQYG-CKHDVFALNSLLSAICRDGKTIDAWQFLRV-VD-GRIKPDNDTY 207 (482)
Q Consensus 141 li~~~~~~~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~-~~~~~~~~~~ 207 (482)
++..+.+.- -..-|...++.+.+.+ -.-+..-...-...+-..|++++|++++.. .. .-..-+...-
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~ 229 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE 229 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH
Confidence 555544431 1234666777776654 222222233334556678999999998854 33 2334455556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH----HHHHH----Hcc----CCChHHHHHHHHHHHHcCCCC
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS----YLITL----LKG----CDGIYETVNSLKRMMERGCNP 275 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~----l~~~~----~~~----~~~~~~a~~~~~~m~~~~~~~ 275 (482)
+.-+..+...++|.+..++-.++..+ .+|+..+|.- ++... ... .+..+...+...+.....
T Consensus 230 ~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~--- 303 (932)
T KOG2053|consen 230 NKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK--- 303 (932)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---
Confidence 67778888889999988888888765 3444212111 11111 000 022222233222222221
Q ss_pred CHHHHHHHHHHHH---hcCChhHHHHHHHHhhcccCCCC----C---------HHHHHHHHHHHHh--------------
Q 038748 276 GMTFFKLAFEECL---TGQNLRGAEFIWGAMVGRIGFRP----D---------THMYNMMISLYCY-------------- 325 (482)
Q Consensus 276 ~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~----~---------~~~~~~li~~~~~-------------- 325 (482)
....|-+-+.+.. .-|+.+++...|-+- .|-.| | ......++..+..
T Consensus 304 ~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k---fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 304 SRGPYLARLELDKRYKLIGDSEEMLSYYFKK---FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ 380 (932)
T ss_pred ccCcHHHHHHHHHHhcccCChHHHHHHHHHH---hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 1112223333332 335555544333221 12111 1 1111122222211
Q ss_pred ----------cCC-----HHHHHHHHHHHH---HCC------CCCCHh---------hHHHHHHHHHhcCCHH---HHHH
Q 038748 326 ----------SNE-----TGAAMKLLDEMV---YNG------AFPDIQ---------TYNILFEFLVKGRKLW---EASG 369 (482)
Q Consensus 326 ----------~~~-----~~~a~~~~~~m~---~~g------~~p~~~---------~~~~ll~~~~~~g~~~---~a~~ 369 (482)
.|. .+....++.+.. ++| +-|+.. +.+.++..+.+.++.. +|+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 121 122222332221 223 223332 2356667777777655 3444
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 370 LFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+++........ |..+-..+|+.|+-.|-+..|.++|+.+--+.+..|..-|. +..-+...|++..+...+....
T Consensus 461 LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 461 LLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 55554443322 44555578888888899999999998887666666643332 2234455677777766666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=66.59 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=108.0
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhhCC--hhhHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSY-VVADR--VKDAI 155 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~ 155 (482)
++.+++...++.... ..+.|...|..+...|...|+++.|...|++..+..+.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445666667776665 56778999999999999999999999999999999988999999998874 67777 59999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHH
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAI 209 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 209 (482)
+++++..+.+.. +...+..+...+.+.|++++|...|+.+.+..+|+..-+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence 999999997643 77888999999999999999999999988777777655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=60.44 Aligned_cols=103 Identities=8% Similarity=-0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33445555666666666666666665432 25555666666666666666666666665554455666666666666666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAY 244 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~ 244 (482)
|++++|...|+... .+.|++...+
T Consensus 106 g~~~eAi~~~~~Al---~~~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAI---KMSYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHH---HhCCCChHHH
Confidence 66666666666665 2345444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0013 Score=65.09 Aligned_cols=150 Identities=11% Similarity=-0.006 Sum_probs=111.0
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhhCChhhHHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLA--TFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 157 (482)
+...|.+.|+.+.. -...+...+....+.|++..+++.|..+.-..-+..+.-.. .|....-.|.+.++...|..-
T Consensus 507 Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 55677777876655 45567788999999999999999999995555555443222 233344557778999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
|+...+..+ -|...|..+..+|.++|.+..|.++|.+...-.+.+...---..-.-+..|.+.+|+..+.....
T Consensus 585 fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 585 FQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988654 37889999999999999999999999886643233333333333445678999999998887764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-05 Score=60.30 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC
Q 038748 124 IKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD 203 (482)
Q Consensus 124 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (482)
|+......+.+......+...+...|++++|.+.|+.....+. .+...+..+...+...|++++|..+++......+.+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444444444444555555666666666666666666655432 245555556666666666666666666654444555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...+..+..+|...|++++|...|+...
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00081 Score=61.31 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=113.4
Q ss_pred HHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCH
Q 038748 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD-IQTYNILFEFLVKGRKL 364 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 364 (482)
.+...|+++.|+..+..+++.. +-|...+......+.+.|+..+|.+.++++... .|+ ....-.+..++.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 4456788899999999887332 345556666677888999999999999988885 455 44555667788889999
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 365 WEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
.+|..+++........ |+..|..|.++|...|+..++..-..+ +|...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 9999999888776544 788899999999999988887765544 456678899999888887
Q ss_pred HHcC--CCCCHHHHHHHHHHH
Q 038748 445 AEKG--IQVTPFALSKLKQIL 463 (482)
Q Consensus 445 ~~~~--~~~~~~~~~~l~~~~ 463 (482)
.+.. -.|+..-+...|...
T Consensus 452 ~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 452 SQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHhccCCcHHHHHHHHHHHHH
Confidence 6653 123444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00074 Score=56.13 Aligned_cols=190 Identities=13% Similarity=0.035 Sum_probs=129.0
Q ss_pred hcCCchhHhHHhhhhhcC--CC-CCCCH-hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChh
Q 038748 77 SYSHPGPAVKFFRWSAYQ--LN-DKHSP-YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVK 152 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~--~~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 152 (482)
...++++..+++..+... .+ ..++. ..|..++-+....|+.+.|..+++++..+-+-+..+-..-.-.+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 355677777777765553 23 33443 346677777778888888888888888876544443333333344568888
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|+++++.+.+.+ +.|..++--=+...-..|+.-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 8888888888765 34666666666666667777778777777666677888888888888888888888888888886
Q ss_pred hcCCCCCChhhHHHHHHHHHccCC---ChHHHHHHHHHHHHc
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCD---GIYETVNSLKRMMER 271 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~m~~~ 271 (482)
-+.|-+...+..+...++.. | +...+.+.|.+..+.
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~-gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQ-GGAENLELARKYYERALKL 220 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHh
Confidence 44665555555555555544 3 344556666665553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=49.69 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0011 Score=55.03 Aligned_cols=186 Identities=14% Similarity=0.127 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHhHHh--cC-CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChh
Q 038748 219 DVANAKKTFGEMVIE--VG-WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK-LAFEECLTGQNLR 294 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~--~~-~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~ 294 (482)
+.++..+++.++... .| ..++-...|..++.+.... ++.+.|...++.+...- |...-.. .-.-.+-..|+++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 344444444444321 12 3333334444445555555 55555555555554432 2221111 1111223345566
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
+|.++++.++++. +.|..++-.-+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 6666666555222 334444444444444445545555555554443 3345566666666666666666666666665
Q ss_pred HhCCCccChhhHHHHHHHHhcC---CChHHHHHHHHHHHH
Q 038748 375 VKNENVLNHENCRAAVRVYMDS---DDPYVAIKFWKYMIE 411 (482)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 411 (482)
+-..+. ++..+..+...+.-. .+.+.+.++|.+..+
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 543221 222333333333222 234455556655555
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=71.85 Aligned_cols=120 Identities=14% Similarity=0.015 Sum_probs=63.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKN--ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
+...+..++..+....+++.+..++.+.... ....-..|..++|+.|.+.|..+.++++++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444555555555555555555555555443 11112233445555555555555555555555555555665666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 466 (482)
+..+.+.|++..|.++..+|...+...++.|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666665555555554444555544444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-06 Score=49.02 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=57.95 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH--hhHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV--FALNSL 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 176 (482)
..|..++..+. .++...+...++.+...++.+ ....-.+...+...|++++|...|+........++. ...-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44555555553 677777777788887776544 233444556777778888888888888776522221 233445
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
...+...|++++|+..++.... .......+.....+|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6667777888888887766432 233445666777778888888888877765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-06 Score=48.17 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=7e-05 Score=68.53 Aligned_cols=123 Identities=18% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
...++..+...++++.|..+|+++. +. .|+. ...++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~-~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLR-ER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHH-hc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555566666666666664 22 2332 2335555555555566666666555431 113444444444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
+.++.+.|+.+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 566666666666666553221 3345666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=48.01 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0001 Score=57.58 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=82.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+......+...+...|++++|.+.|+.+...++.+...+..+..++...|++++|..+++...+.+ +.+...+..+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 456677777888889999999999999988888788889999999999999999999999887765 3456777778888
Q ss_pred HHhcCChHhHHHHHHHhhC
Q 038748 180 ICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~ 198 (482)
+...|++++|.+.|+....
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.3e-05 Score=68.41 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
.....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++.....+.+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555566677777777777776643 33 33345666666666666777666644444556666666666677
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
+.++++.|+.+.+++. .+.|++..+|..|..+|... |+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~-~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQL-GDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhc-CCHHHHHHHHhcC
Confidence 7777777777777765 44666666777777777777 7777777666654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.2e-05 Score=69.19 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=103.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.+.+.+...+..+++.+....+++.+..++........ ...-..|..++|+.|.+.|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45667788888899999999999999999888852211 11233455699999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (482)
++|.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988887776777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00044 Score=54.59 Aligned_cols=85 Identities=8% Similarity=-0.035 Sum_probs=35.2
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (482)
..++.. |++++|...|+........++ ......+...+...|++++|...++... .. ......+......|.+.
T Consensus 56 ~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHC
Confidence 334444 455555555544444331111 1122223344444555555555554331 11 12223334444445555
Q ss_pred CCHHHHHHHHH
Q 038748 327 NETGAAMKLLD 337 (482)
Q Consensus 327 ~~~~~a~~~~~ 337 (482)
|++++|...|+
T Consensus 132 g~~~~A~~~y~ 142 (145)
T PF09976_consen 132 GDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHH
Confidence 55555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.3e-05 Score=53.12 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=46.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMISLYCYSN--------ETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
.|..|...+++...-.+|+.+ ++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..||+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445556666666666666 46666 566666666666655432 23345666667776667777777777
Q ss_pred HHHHHHh
Q 038748 354 LFEFLVK 360 (482)
Q Consensus 354 ll~~~~~ 360 (482)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=1e-05 Score=44.42 Aligned_cols=29 Identities=38% Similarity=0.602 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666555
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=51.44 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=46.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHC-SDLSETGNLLVAGLCDMH--------MLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666665555432 2334566777777777777777777777
Q ss_pred HHHHH
Q 038748 461 QILIK 465 (482)
Q Consensus 461 ~~~~~ 465 (482)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.01 Score=53.31 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCCh
Q 038748 320 ISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDP 399 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 399 (482)
|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++.+. +-++.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334444555555544443331 24555555555555555555554443221 11234455555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 400 YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
.+|.++... + .+..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHH
Confidence 555555544 1 1133344555555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00033 Score=53.16 Aligned_cols=94 Identities=21% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC---CCCHHHHHHHHH
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRI---KPDNDTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~ 212 (482)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+.... +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444455555555555554433210 012233334444555555555555555433211 112334444445
Q ss_pred HHHhcCCHHHHHHHHHHhH
Q 038748 213 GWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~ 231 (482)
++.+.|++++|...++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHhCChHHHHHHHHHHH
Confidence 5555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00031 Score=62.21 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=88.2
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV-ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
.+|..++...-+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|..+|+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4677777777777778888888888876555555556555555233 46666688888877765 334667777777778
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDN---DTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
...|+.+.|..+|+.....+.++. ..|...+..=.+.|+++.+.++.+++..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888665544433 5777777777788888888877777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-05 Score=43.98 Aligned_cols=29 Identities=38% Similarity=0.622 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00054 Score=60.71 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4577777777777777888888877775422 123333333333 22345666678888777765 33356667777777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 393 YMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 393 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
+.+.++.+.|..+|+..... +.++. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888777654 32322 36777777767777777777777777664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00066 Score=51.47 Aligned_cols=105 Identities=17% Similarity=0.022 Sum_probs=61.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC--CCHhhHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDVMEQYGCK--HDVFALNSL 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 176 (482)
.++..+...+.+.|++++|.+.|+.+....+. ....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34455556666667777777777666655432 2345555666666667777777777666653211 113445555
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCCHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPDNDT 206 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 206 (482)
..++.+.|+.++|...++.+....+.+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666677777777666655444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-05 Score=53.05 Aligned_cols=81 Identities=19% Similarity=0.075 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCS-DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
.|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888888887765421 2344455577778888888888888877 22221 122444455777888888888888
Q ss_pred HHHH
Q 038748 475 LLKK 478 (482)
Q Consensus 475 ~~~~ 478 (482)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00048 Score=49.55 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=40.5
Q ss_pred HHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 038748 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (482)
+...+...|++++|...++...+... .+...+..+..++...|++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 34444444555555555544444321 12233444444444445555555555443332233334444555555555555
Q ss_pred HHHHHHHHHh
Q 038748 221 ANAKKTFGEM 230 (482)
Q Consensus 221 ~~a~~~~~~~ 230 (482)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0079 Score=50.46 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDTYAIL 210 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l 210 (482)
..+.++.++...|.+.-...++++.++...+.++.....|.+.-.+.||.+.|...|+.+.+ +.+-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45566777777788888888898888877677888888888888889999999988886643 333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFK 281 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 281 (482)
...|.-.+++..|...+.++... +|.++...|.-..+..-. |+..+|++.++.|... .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~---D~~~~~a~NnKALcllYl-g~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM---DPRNAVANNNKALCLLYL-GKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhcccc---CCCchhhhchHHHHHHHH-HHHHHHHHHHHHHhcc--CCccchhh
Confidence 55666778888888888887643 555566666666666666 8888888888888774 34444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.022 Score=49.26 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=42.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATF---ASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+...+-.....+...|++++|.+.|+.+....+.+.... -.+..++.+.+++++|...+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333343444555667788888888888877665433332 45566777778888888888777765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.031 Score=50.22 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
+.+..|.-|...|+...|.++-.+. + .|+..-|-..+.+++..++|++-.++... +-.+..|-.++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 3444555666667776666665544 2 36666677777777777777665554321 12346677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 359 VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7777777776666651 1245566667777777766643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00085 Score=48.18 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
|..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.|+...+... .+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 445556666677777777777777666555556666666677777777777777776665432 2334566666666677
Q ss_pred CChHhHHHHHHHhh
Q 038748 184 GKTIDAWQFLRVVD 197 (482)
Q Consensus 184 g~~~~a~~~~~~~~ 197 (482)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 77777776666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=56.11 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 038748 275 PGMTFFKLAFEECLT-----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----------------NETGAAM 333 (482)
Q Consensus 275 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~ 333 (482)
-+..+|..+++.+.+ .|.++-....+..| .+.|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 355666666666653 35556666666666 4677777777777777666432 1235567
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 038748 334 KLLDEMVYNGAFPDIQTYNILFEFLVKGR 362 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 362 (482)
+++++|...|+.||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 77777777777777777777777775544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.026 Score=48.74 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTY---AILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
..+...|++++|.+.|+.+....+-+.... -.+..+|.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455666666666666554333333322 34455666667777777777666644
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=51.73 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=8.4
Q ss_pred HHHHHHhhCChhhHHHHHHH
Q 038748 141 VFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~ 160 (482)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0018 Score=52.60 Aligned_cols=63 Identities=10% Similarity=-0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP--DIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
..|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444445555555555555555554432111 112444455555555555555555555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.06 Score=52.24 Aligned_cols=323 Identities=11% Similarity=0.053 Sum_probs=176.4
Q ss_pred CCCCCHhhHH-----HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCCh--hhHHHHHHHHHhcCCCC
Q 038748 96 NDKHSPYAWN-----LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV--KDAITTFDVMEQYGCKH 168 (482)
Q Consensus 96 ~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~ 168 (482)
|.+.+..-|. .+|+-+...+.+..|+++-..+...-......|......+.+..+. +++++..++=..... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 4455544444 4567777788888888887777655433456666666666666422 222222222222112 2
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhC-C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---------
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDG-R----IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV--------- 234 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 234 (482)
....|..+..-....|+.+.|..+++.=.. + .-.+..-+...+.-+.+.|+.+-...++-++..+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777788999998887764221 1 11233445666777778888888777776665431
Q ss_pred CCCCCChhhHHHHHH--------HHHccCCChHHHHHHHHHHH------HcCCCCCHHHHHHHHHHHHhcCCh-------
Q 038748 235 GWDPDNVPAYDSYLI--------TLLKGCDGIYETVNSLKRMM------ERGCNPGMTFFKLAFEECLTGQNL------- 293 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~--------~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~~~~li~~~~~~g~~------- 293 (482)
...|.....|.-+++ .+... ++...++.-|..-. ..|..|+ ......+|.+....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 112322223322222 11111 22222221111000 0122222 22233344433321
Q ss_pred ---hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 294 ---RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 294 ---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
.+-.++.+.+..+.|..-...+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 12223333333333433333344444555666778888877766654 36888888888888888888776666
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
-+... .+.-|.-++.+|.+.|+.++|.+++-+... . .-...+|.+.|++.+|.++.-
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHH
Confidence 55442 245567778888888888888887755321 1 145677888888888776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0021 Score=52.55 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 296 AEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
-...|+... +-..+..+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+
T Consensus 33 ~~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~ 107 (228)
T PF06239_consen 33 HEELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF 107 (228)
T ss_pred hHHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH
Confidence 345555542 2356777888888888753 6677777777888888888888888888877654 3321 1112
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMH 432 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 432 (482)
|+.+-- -.-.+-+-|++++++|...|+-||..++..++..+++.+
T Consensus 108 fQ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 221111 011245567888888888888888888888888885544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=50.84 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=40.8
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|..+|+.+..-.+-+..-|-.|.-++...|++++|+..|.... .+.|++...+-.+..+++.. |+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~c~L~l-G~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAECYLAC-DNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHHHHHHc-CCHH
Confidence 3344555555555544433333344444444445555555555555554443 23444444444455555555 5555
Q ss_pred HHHHHHHHHH
Q 038748 260 ETVNSLKRMM 269 (482)
Q Consensus 260 ~a~~~~~~m~ 269 (482)
.|.+.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0063 Score=49.65 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVR 391 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 391 (482)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3445555555566666666666666554322221 234555555566666666666666666554322 3334444555
Q ss_pred HHhcCCChHH
Q 038748 392 VYMDSDDPYV 401 (482)
Q Consensus 392 ~~~~~~~~~~ 401 (482)
+|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0022 Score=59.03 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=62.6
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (482)
...+...|++++|++.|++.++... -+...|..+..+|...|++++|+..++......+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4445566777777777777776543 245566666677777777777777777655544556666777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCCCh
Q 038748 222 NAKKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 222 ~a~~~~~~~~~~~~~~p~~~ 241 (482)
+|...|++.. .+.|++.
T Consensus 88 eA~~~~~~al---~l~P~~~ 104 (356)
T PLN03088 88 TAKAALEKGA---SLAPGDS 104 (356)
T ss_pred HHHHHHHHHH---HhCCCCH
Confidence 7777777665 3355443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.095 Score=50.92 Aligned_cols=319 Identities=11% Similarity=0.029 Sum_probs=190.8
Q ss_pred hcCCCCCHHHHHHH-----HH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHHh
Q 038748 60 KTLIRVSQETVEQV-----LK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMKK 129 (482)
Q Consensus 60 ~~~~~~~~~~~~~l-----l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~ 129 (482)
+-|++++-..|..+ +. .+.+.+..|.++-.|+... -.. ....|......+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p-~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP-ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc-ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45777777766543 22 4467888999999998762 112 25666666666666532 2223333333333
Q ss_pred cCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC-------
Q 038748 130 ENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK----HDVFALNSLLSAICRDGKTIDAWQFLRVVDG------- 198 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------- 198 (482)
. ......|..+.+.....|+++.|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-.+..
T Consensus 503 ~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 234456888888888899999999988754332211 1223455667777888888887776655432
Q ss_pred -----CCCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HhHH---hcCCCCCChhhHHHHHHHHHccCCC---
Q 038748 199 -----RIKPDNDTYAILLE--------GWEKERDVANAKKTFG--EMVI---EVGWDPDNVPAYDSYLITLLKGCDG--- 257 (482)
Q Consensus 199 -----~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~~---~~~~~p~~~~~~~~l~~~~~~~~~~--- 257 (482)
..+.....|.-+++ .+.+.++-..+..-|. .... ..+..|+ .......+.+. ..
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~----lk~~a~~~a~s-k~~s~ 656 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA----LKTAANAFAKS-KEKSF 656 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh----HHHHHHHHhhh-hhhhh
Confidence 12222333333332 1122222222222221 1000 0133332 22233333333 22
Q ss_pred -------hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCH
Q 038748 258 -------IYETVNSLKRMME-RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329 (482)
Q Consensus 258 -------~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (482)
..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..++|
T Consensus 657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhH
Confidence 1111222222222 2334445556667778888999999999988774 68888888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
++-+++-+.+. .+..|..++.+|.+.|+.++|.+++.+... . .-...+|.+.|++.+|.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88766554432 357788999999999999999999876532 1 15778899999999888754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0036 Score=57.64 Aligned_cols=89 Identities=9% Similarity=-0.125 Sum_probs=59.5
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 188 (482)
..+...|+++.|++.|++..+.++.+...|..+..+|...|++++|+..++...+... .+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 3444566777777777777776666666677777777777777777777777766532 245566666667777777777
Q ss_pred HHHHHHHhhC
Q 038748 189 AWQFLRVVDG 198 (482)
Q Consensus 189 a~~~~~~~~~ 198 (482)
|...|+....
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 7777766544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0004 Score=46.49 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=42.2
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
...|++++|+++|+.+....+.+...+..+..+|.+.|++++|.++++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 356777777777777777777677777777777777777777777777776653 44333333
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=48.23 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3344444445555555555555555544321111 23444455555555555555555555433223334444444444
Q ss_pred HHhcCC
Q 038748 214 WEKERD 219 (482)
Q Consensus 214 ~~~~~~ 219 (482)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.076 Score=48.43 Aligned_cols=379 Identities=11% Similarity=0.069 Sum_probs=219.7
Q ss_pred hHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 85 VKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+++-+.++ ..+.|..+|-.||.-+...+..++..+++++|....+.-..+|..-+.+=...+++.....+|.+....
T Consensus 29 lrLRerIk---dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIK---DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhh---cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 34444443 456788999999999999999999999999999887767788999898888889999999999999886
Q ss_pred CCCCCHhhHHHHHHHHHhcCChH------hHHHHHHHhhC--CCCC-CHHHHHHHHHHH---HhcCCHH------HHHHH
Q 038748 165 GCKHDVFALNSLLSAICRDGKTI------DAWQFLRVVDG--RIKP-DNDTYAILLEGW---EKERDVA------NAKKT 226 (482)
Q Consensus 165 ~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~--~~~~-~~~~~~~l~~~~---~~~~~~~------~a~~~ 226 (482)
.+ +...|..-+.-.-+.+..- ...+.|+-... ++.| ....|+..+... -..|.|+ .....
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 54 4666766666444433211 11223333222 3333 334455544433 3345444 44555
Q ss_pred HHHhHHhcCCCCC-Ch-------hhHHHHHHHHHcc------CCChHHHHHHHHHHHH--cCCCC----CHHH-------
Q 038748 227 FGEMVIEVGWDPD-NV-------PAYDSYLITLLKG------CDGIYETVNSLKRMME--RGCNP----GMTF------- 279 (482)
Q Consensus 227 ~~~~~~~~~~~p~-~~-------~~~~~l~~~~~~~------~~~~~~a~~~~~~m~~--~~~~~----~~~~------- 279 (482)
+.++.. .|- +. ..|..-++..... .--+-.|.+.++++.. .|+.. +..+
T Consensus 184 Y~ral~----tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 184 YMRALQ----TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHc----CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 666543 221 11 0111111111100 0112333444444322 12111 1111
Q ss_pred -------------------------------HHHHH--------------HHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 280 -------------------------------FKLAF--------------EECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 280 -------------------------------~~~li--------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
|+..+ ..+...++-+.|.+....-. ...|+..
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~---~~spsL~ 336 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI---EMSPSLT 336 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc---cCCCchh
Confidence 11111 11123344455555544332 1123311
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--------------CCC---------------CCCHhhHHHHHHHHHhcCCHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVY--------------NGA---------------FPDIQTYNILFEFLVKGRKLW 365 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------------~g~---------------~p~~~~~~~ll~~~~~~g~~~ 365 (482)
. .+-..|.-.++.+.+...|++..+ .+. .--...|...+.+-.+..-++
T Consensus 337 ~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 M--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred e--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 1 111222223333333333332211 011 012345667777777777889
Q ss_pred HHHHHHHHHHhCC-CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 038748 366 EASGLFNEMVKNE-NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETG-NLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 366 ~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.|..+|.++.+.+ +.++...++++|..++ .|+...|.++|+.-... .||...| +-.+.-+...++-+.|..+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999988 6678888899998776 57888899999876653 3555444 5556667788999999999996
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 444 MAEKGIQVT--PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 444 m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+. +.-+ ..+|..++..=..-|+...+..+-++|.+
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 5443 1222 46888999888888998888877777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.01 Score=46.24 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
.-.+...+...|++++|..+|+.+....+ -+..-|-.|..++-..|++++|+..|...-.-.+.|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34445555667777777777777766543 24445566666677777777777777775443456677777777777777
Q ss_pred CCHHHHHHHHHHhHHhcC
Q 038748 218 RDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~ 235 (482)
|+.+.|.+.|+......+
T Consensus 117 G~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 117 DNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 777777777777665433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.077 Score=47.47 Aligned_cols=316 Identities=11% Similarity=0.025 Sum_probs=192.5
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHh--hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HhhCCh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG--KNCLFDAMWDAIKSMKKENVLSLATFASVFSSY--VVADRV 151 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~ 151 (482)
.....+..+...|...+.. ..|..|-.++. ..|+-..|.++-.+..+.-..+...+..++.+- .-.|++
T Consensus 64 ~iw~sP~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~ 136 (531)
T COG3898 64 SIWESPYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDY 136 (531)
T ss_pred HHHhCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCch
Confidence 4467888888888876664 34555555544 356777777776655433223444444444433 345999
Q ss_pred hhHHHHHHHHHhcCCCCCHhh--HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 152 KDAITTFDVMEQYGCKHDVFA--LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
+.|.+-|+.|... |.... ...|.-..-+.|+.+.|..+-+..-..-+.-...+...+...+..|+|+.|+++++.
T Consensus 137 ~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 137 EDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999999999862 33222 223333344678888888887776655555677888899999999999999999988
Q ss_pred hHHhcCCCCCChhhH-HHHHHHHH--ccCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 230 MVIEVGWDPDNVPAY-DSYLITLL--KGCDGIYETVNSLKRMMERGCNPGMT-FFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 230 ~~~~~~~~p~~~~~~-~~l~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
-....-+.++-..-- ..|+.+-. ....+...|...-.+..+ +.||-. .-.....++.+.|++.++-.+++.+-
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW- 290 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW- 290 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-
Confidence 765544555322111 11221111 111355566655554444 445432 22344577888999999999999886
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh
Q 038748 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH 383 (482)
Q Consensus 306 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 383 (482)
+. .|....+.. ..+.+.|+.. +.-++..... .++| +...-..+..+....|++..|..--+.... ..|..
T Consensus 291 K~--ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 291 KA--EPHPDIALL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred hc--CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 33 454444332 3345556532 2222222110 1233 345566667777788888887776666554 46777
Q ss_pred hhHHHHHHHHh-cCCChHHHHHHHHHHHHc
Q 038748 384 ENCRAAVRVYM-DSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 384 ~~~~~li~~~~-~~~~~~~a~~~~~~m~~~ 412 (482)
..|..|.+.-. ..|+-.++...+.+..+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777776654 448888888888777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0029 Score=51.41 Aligned_cols=96 Identities=11% Similarity=-0.083 Sum_probs=71.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL--NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLV 425 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 425 (482)
...|..+...+...|++++|...|+........+ ...++..+..+|...|++++|.+.++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556667777888999999999999998764332 23478888899999999999999999988742 22235566666
Q ss_pred HHHH-------hcCChhHHHHHHHHH
Q 038748 426 AGLC-------DMHMLPEAVKYAKGM 444 (482)
Q Consensus 426 ~~~~-------~~g~~~~A~~~~~~m 444 (482)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 778888776666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.014 Score=56.29 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 198 GRIKPDNDTYAILLEGWEKE-----RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
...+.|...|...+++.... ++.+.|..+|++.. ...|+...++..+..++... ..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~-~~~~------------- 393 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVR-HSQQ------------- 393 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHH-HhcC-------------
Confidence 34567778888888875542 23668888888887 44887766666654444332 1111
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
+.. ..++..+.+.............+...|.++.-.+...|++++|...+++..+.+ |+...|.
T Consensus 394 --~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~ 457 (517)
T PRK10153 394 --PLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYV 457 (517)
T ss_pred --Ccc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHH
Confidence 000 001112222222211110112233444444444444556666666666555542 4555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
.+...+...|+.++|.+.+++...
T Consensus 458 ~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 458 LLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555556666666666655554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.098 Score=47.84 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-------MMISLYCY----SNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p 346 (482)
.+|..++....+.++...|.+.+.-+. -+.|+...-. .+-+..+. .-+..+-+.+|+......+.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~---~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLK---ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH---hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 456666666777777777777766553 2233332111 11122221 11122334445444443222
Q ss_pred CHhhHHHHHHH---HHhcCC-HHHHHHHHHHHHhCCCccChhhHHH----HHHHHhc---CCChHHHHHHHHHHHHcCCC
Q 038748 347 DIQTYNILFEF---LVKGRK-LWEASGLFNEMVKNENVLNHENCRA----AVRVYMD---SDDPYVAIKFWKYMIENHCS 415 (482)
Q Consensus 347 ~~~~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~---~~~~~~a~~~~~~m~~~~~~ 415 (482)
.......++.+ +-+.|. -++|..+++.+.+-.. -|...-|. +=.+|.. ...+..-.++-+-+.+.|++
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11222333333 233444 7788888888876321 12222222 2223322 23344444555555577876
Q ss_pred CCh----hhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 416 DLS----ETGNLLVAG--LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 416 p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
|-. ..-|.|..+ +...|++.++.-.-.-..+ +.|++.+|..+.-++....++++|.+++.++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 643 344555544 4567888888776665553 5689999999888999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.047 Score=45.88 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=19.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
...|++++|...|+.+.....-.|-...+.-.++.++.+. |++++|...++...
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFI 69 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 3444444444444444433222221222333333444444 44444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=43.53 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..+...|++++|...|+.+....+-+...+..+..++...|++++|..+|+++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555544444455555555555555555555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=49.68 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=39.9
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHhc---CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-----CHH-HHH
Q 038748 212 EGWEKE-RDVANAKKTFGEMVIEV---GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-----GMT-FFK 281 (482)
Q Consensus 212 ~~~~~~-~~~~~a~~~~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~-~~~ 281 (482)
..|-.. |+++.|.+.|++...-. +-.-.....+..+...+... |++++|.++|++........ +.. .|.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 444444 56666666666554311 10000112334444555555 66666666666655432111 111 122
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+-++...|+...|.+.+++..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334444566666666666553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.05 Score=48.99 Aligned_cols=298 Identities=11% Similarity=-0.021 Sum_probs=169.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
....-..+.+..++..|+..+...++..+. +..-|..-...+...|+++++.--.+.-.+--......+.-.-+++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 444567778888889999999888887543 4556666677777777887776544332221122233444555555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCChhH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLA-FEECLTGQNLRG 295 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~ 295 (482)
++..+|...++.- ..+ ....++..++....... +|...++..+ ..++...|++++
T Consensus 131 ~~~i~A~~~~~~~-----------~~~------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 131 SDLIEAEEKLKSK-----------QAY------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred HHHHHHHHHhhhh-----------hhh------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 5555555555411 111 11122222222222211 2333444333 234556788888
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-------------HHHHHh
Q 038748 296 AEFIWGAMVGRIGFRPDTHMYNMMISL--YCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL-------------FEFLVK 360 (482)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------l~~~~~ 360 (482)
|.++-..+.+... ...+...+++ +...++.+.|...|++.... .|+...-..+ ..-..+
T Consensus 188 a~~ea~~ilkld~----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 188 AQSEAIDILKLDA----TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHHHHHHHhccc----chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 8887777753221 1223333332 33456778888888777664 3443221111 122467
Q ss_pred cCCHHHHHHHHHHHHhC---CCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhH
Q 038748 361 GRKLWEASGLFNEMVKN---ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~ 436 (482)
.|++..|.+.|.+.+.. +..++...|........+.|+..+|+.-.++..+.+ +.. ..|-.-..++...++|++
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988765 345666777777778888999999998888877632 221 222222344556688899
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhc
Q 038748 437 AVKYAKGMAEKGIQV-TPFALSKLKQILIKAR 467 (482)
Q Consensus 437 A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g 467 (482)
|.+-|+...+..-.+ ...++.....++-+..
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 998888876543222 2344444444554433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0034 Score=53.77 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
-+.+.++|++|+..|.+.++... -|.+.|..-..+|++.|.++.|++-.+....-.+-...+|..|-.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 35567888888888888888643 36677777888888888888888766665444455567888888888888888888
Q ss_pred HHHHHHhHHhcCCCCCCh
Q 038748 224 KKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~ 241 (482)
++.|++.+ .+.|++.
T Consensus 169 ~~aykKaL---eldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNE 183 (304)
T ss_pred HHHHHhhh---ccCCCcH
Confidence 88888775 6688655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.004 Score=53.40 Aligned_cols=100 Identities=11% Similarity=-0.035 Sum_probs=72.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHH
Q 038748 323 YCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 402 (482)
+.+.+++++|+..|.+.++... -|.+.|..-..+|.+.|.++.|.+=.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 4567888888888888887532 25566677777888888888888877777764433 345788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
.+.|+..++ +.|+..+|-.=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888888776 5677766644443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=43.26 Aligned_cols=54 Identities=6% Similarity=-0.042 Sum_probs=25.0
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
++-..|+.++|+.+|++....|... ...+-.+...+...|++++|..+|+....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555544322 22333444444444555555555554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.019 Score=55.50 Aligned_cols=135 Identities=8% Similarity=-0.053 Sum_probs=69.6
Q ss_pred cCCCCHHHHHHHHHHHHhh-----CChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhc--------CChHhHHHHHHH
Q 038748 130 ENVLSLATFASVFSSYVVA-----DRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRD--------GKTIDAWQFLRV 195 (482)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~--------g~~~~a~~~~~~ 195 (482)
..+.+..+|...+++.... +....|..+|++..+.. |+ ...|..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3344556666666554332 22456666666666542 33 23333332222211 112223333332
Q ss_pred hhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 196 VDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 196 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
... ....+..+|..+.-.+...|++++|...+++.. .+.| +..+|..+...+... |+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~p-s~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEM-SWLNYVLLGKVYELK-GDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 111 233444566666555555677777777777765 3345 456666666666666 7777777777766653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.061 Score=42.88 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccChhhH
Q 038748 308 GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-VLNHENC 386 (482)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 386 (482)
...|++..-..|..+..+.|+..+|...|.+...--..-|....-.+.++....+++..|...++++.+.+. .-++.+.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 345666666677777788888888888887776543445666666777777777888888888877776531 1123345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 387 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
..+.+.|...|.+.+|..-|+.....- |+...-......+.++|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 566777777888888888887777643 44333233334456667666554433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=43.35 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=41.0
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
...+...|++++|.+.|+++.+..+.+...+..+..++...|++++|...|+.+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777777777777777777667777777777777777777777777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.009 Score=53.47 Aligned_cols=268 Identities=12% Similarity=-0.028 Sum_probs=162.3
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHH--Hh--cCCC-CCHhhHHHHHHH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVM--EQ--YGCK-HDVFALNSLLSA 179 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~~ 179 (482)
.-+++.|+...-+.+|+...+-|..+ ..+|..|..+|.-.+++++|++....= .. .|-+ -.......|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46889999999999999999988643 456777788888889999998865321 11 1111 112233334445
Q ss_pred HHhcCChHhHHHHHHH-hh---C-C-CCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhHH-
Q 038748 180 ICRDGKTIDAWQFLRV-VD---G-R-IKPDNDTYAILLEGWEKERD--------------------VANAKKTFGEMVI- 232 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~-~~---~-~-~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 232 (482)
+--.|.+++|...... +. + + -......+..+.+.|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556777776653322 21 0 1 11123344455566654332 3344455543221
Q ss_pred --hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhh-
Q 038748 233 --EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM----ERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMV- 304 (482)
Q Consensus 233 --~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 304 (482)
+.|-.-....+|..+-+.|+-. |+++.|+..-+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLL-GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeee-ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1121111234566677777777 89999887665432 22311 224567777888888899999988887643
Q ss_pred ---cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 305 ---GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN-----GAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 305 ---~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+-..-.....+..+|..+|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11112334566777888888888899998887654321 1122446788888899999999999887766554
Q ss_pred C
Q 038748 377 N 377 (482)
Q Consensus 377 ~ 377 (482)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 3
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.097 Score=43.98 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+-.....+...|++++|.+.|+.+....+ ....+.-.++.++.+.|+++.|...++.+.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444556667888888888888877654 23455667777788888888888888887765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=50.86 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..|......|...|++++|.+.|....
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 445566666666777777777766653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=47.18 Aligned_cols=98 Identities=6% Similarity=0.017 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
|..++..+|.++++.|+++....+++.. .|+.++....- +. --......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHH
Confidence 4678888999999999999988888655 46666422110 00 1122346788999999
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
++.+|+..|++..|.++.+...+..+++.+..+|..|+.=.
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999888888888888888888643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=43.34 Aligned_cols=63 Identities=10% Similarity=0.135 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHh
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQ 163 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 163 (482)
...|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666656666666666666666 56666666666554
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=44.24 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=22.9
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|++++|.++|+.+....+.+...+..+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455554444433333344444445555555555555555554444
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.18 Score=45.60 Aligned_cols=254 Identities=12% Similarity=0.031 Sum_probs=139.1
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHhHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 190 (482)
-+..++..|+..+....+..+.+...|..-...+...|++++|.-=.+.-.+.. |+ .....-.-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHHHHH
Confidence 344455556666666666555555555555555555566665555444433321 11 111111222222223333333
Q ss_pred HHHH------------HhhC-----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 191 QFLR------------VVDG-----RIKPDNDTYAIL-LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 191 ~~~~------------~~~~-----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+.++ .... .-+|...+|-.+ ..++...|++++|.+.-..+++ +++.+......--.++.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLY 214 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccc
Confidence 2221 1111 122444455544 4566778888888887776653 34433332222222333
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChhHHHHHHHHhhcc--cCCCCCHHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLA-------------FEECLTGQNLRGAEFIWGAMVGR--IGFRPDTHMYN 317 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ 317 (482)
-. ++.+.+..-|++....+ |+...-..+ .+-..+.|++..|.+.+.+.+.. .++.++...|.
T Consensus 215 y~-~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 215 YN-DNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred cc-cchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 34 77888888888776643 543332222 23345789999999999988711 12334556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-H--HHHHHhcCCHHHHHHHHHHHHhC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI-L--FEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l--l~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
.......+.|+..+|+.--+...+. |..-.-. + ..++...++|++|.+-|+...+.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777778889999999888777663 4332222 2 23455578888888888887765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.13 Score=43.44 Aligned_cols=133 Identities=13% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHH----
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAV---- 390 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 390 (482)
+.+.++..+.-.|.+.-....+++..+...+-++.....+.+.-.+.|+.+.|..+|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555556666666666666665545555666666666666677777766666665543333433333332
Q ss_pred -HHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 391 -RVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 391 -~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
..|.-++++.+|...+.++...+- .|...-|.-.-+..-.|+..+|++.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 234445566666666666654431 222233333333334566677777777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.056 Score=40.57 Aligned_cols=90 Identities=8% Similarity=-0.060 Sum_probs=45.2
Q ss_pred HHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHHHHHHHhc
Q 038748 250 TLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMMISLYCYS 326 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 326 (482)
++-.. |+.++|+.+|++....|.... ...+..+..++...|++++|..+|+....+..- ..+......+..++...
T Consensus 10 a~d~~-G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSL-GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 33444 666666666666666554433 233444555566666666666666665422110 00112222233345556
Q ss_pred CCHHHHHHHHHHHH
Q 038748 327 NETGAAMKLLDEMV 340 (482)
Q Consensus 327 ~~~~~a~~~~~~m~ 340 (482)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=49.09 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV 195 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 195 (482)
+.-++++++.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 334455666665566543 33455666677777666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0041 Score=49.21 Aligned_cols=69 Identities=6% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHh-----cCCCCCHhh
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ-----YGCKHDVFA 172 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 172 (482)
...++..+...|+++.|..+...+....+.+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455566666666666666666666666666666666666666666666665532 355555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.2 Score=44.54 Aligned_cols=121 Identities=15% Similarity=0.038 Sum_probs=64.5
Q ss_pred hhCCCcHHHHHHHHHHHhcC-CCCHH--------HHHHHHHHHHhhC-ChhhHHHHHHHHHhc--------CCCCCH---
Q 038748 112 GKNCLFDAMWDAIKSMKKEN-VLSLA--------TFASVFSSYVVAD-RVKDAITTFDVMEQY--------GCKHDV--- 170 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 170 (482)
.+.|+++.|..++.+..... ..++. .|+.-... ...+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677888888887776644 22222 22222222 3334 666666666554332 112222
Q ss_pred --hhHHHHHHHHHhcCChHh---HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 171 --FALNSLLSAICRDGKTID---AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 171 --~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.++..++.+|...+..+. |..+++.+.+..+-...++..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555666666555433 444444454433334555555566666667777777777777653
|
It is also involved in sporulation []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.33 Score=47.01 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-C---------CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-V---------LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCK 167 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 167 (482)
.|-+..|..+.......-.++-|...|-+...-. + .+...-.+=+.+| -|++++|.++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 3666777777766666656666666555443321 1 1222222223333 277777777776665532
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
..+..+.+.|++-.+.++++.=.. ..+.-...|+.+...++....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666676666655543221 1122234566666666666666666666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=51.16 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+..+..+|...|++++|...|..+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.036 Score=43.78 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=51.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFALS 457 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~~ 457 (482)
....++..+...|+++.|.++++.+.... +.|...|..+|.+|...|+..+|.+.|+++. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44566777788899999999999988765 3466788899999999999999999988773 458888876643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=50.43 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCC---CCHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHD----VFALNSLLSAICRDGKTIDAWQFLRVVDGRIK---PDNDTYAI 209 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~ 209 (482)
.|...+..+.+.|++++|...|+.+.+.. |+ ...+--+..+|...|++++|...|+.+....+ .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444444556666666666555532 22 13444455555566666666666665543222 22333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
+..++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555666666666666666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0044 Score=41.52 Aligned_cols=59 Identities=17% Similarity=-0.035 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR-KEAVYEELLKKC 479 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m 479 (482)
.|..+...+...|++++|+..|++.++.+. -+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444555555555544444431 12334444444444444 444444444443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=51.27 Aligned_cols=131 Identities=10% Similarity=-0.074 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-ccChhhHHHHHHHHhcCCChHHHHHHHHHHH----HcCC-CCChh
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKN----EN-VLNHENCRAAVRVYMDSDDPYVAIKFWKYMI----ENHC-SDLSE 419 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~ 419 (482)
.|..|-..|.-.|+++.|....+.-++. |- ......+..+..++.-.|+++.|.+.|+.-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667788777665543321 21 1123456667777888888888888777543 2221 12234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMA----EKG-IQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
+..+|.+.|.-..++++|+.++.+-. +.+ ..-....+.+|..+|...|..++|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55667777777778888888776532 211 22244677788888888888888887766543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.084 Score=45.75 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=68.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---CChHhHHHHHHHhhCCCC
Q 038748 125 KSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD---GKTIDAWQFLRVVDGRIK 201 (482)
Q Consensus 125 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~ 201 (482)
+.-...++-|...|..|...|...|+++.|...|....+.. .++...+..+..++... .+..++..+|+++....+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 33344556677777777777777777777777777776642 13445555555544433 234556667777666566
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
.|+.+...|...+...|++.+|...|+.|.+
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6777777777777777777777777777763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.47 Score=46.05 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=116.2
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChh
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVK 152 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 152 (482)
...|.+++|.+++-.+.++ ...|..+.+.|++-...+++..-- .+. .-..+|+.+...++....|+
T Consensus 745 ~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888765542 345677788888877777665311 112 23567889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|.+.|..-.. ....+.++.+..++++.+.+...+ +.|....-.+..++...|.-++|.+.|-+..
T Consensus 814 ~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s- 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS- 879 (1189)
T ss_pred HHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence 99988876532 123566676666666655544443 4455666677788888888888887765432
Q ss_pred hcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHHhcCChhHHHH
Q 038748 233 EVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFF--------------KLAFEECLTGQNLRGAEF 298 (482)
Q Consensus 233 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------~~li~~~~~~g~~~~a~~ 298 (482)
.|. ..+..+... +++.+|.++-+...- |...+. ...|..+.+.|+.-+|.+
T Consensus 880 ----~pk------aAv~tCv~L-nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daar 944 (1189)
T KOG2041|consen 880 ----LPK------AAVHTCVEL-NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAAR 944 (1189)
T ss_pred ----CcH------HHHHHHHHH-HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHH
Confidence 221 123445555 677777766554321 111111 112444556666666666
Q ss_pred HHHHhh
Q 038748 299 IWGAMV 304 (482)
Q Consensus 299 ~~~~~~ 304 (482)
++.+|.
T Consensus 945 ll~qma 950 (1189)
T KOG2041|consen 945 LLSQMA 950 (1189)
T ss_pred HHHHHh
Confidence 666664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0089 Score=40.53 Aligned_cols=57 Identities=4% Similarity=0.038 Sum_probs=45.9
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
..|.+.++++.|.++++.+...++.+...+.....++...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 466778888888888888888877777778888888888888888888888887754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.37 Score=43.97 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-C--CCCCHHHHHHHHHHHHh---cCCH
Q 038748 259 YETVNSLKRMMERGCNP---GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-G--FRPDTHMYNMMISLYCY---SNET 329 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~~~~~~li~~~~~---~~~~ 329 (482)
++..+.+.+|...--.| +..+...++-+|....+++...++.+.+. .. . +.-...+--...-++.+ .|+.
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 44555556665542222 33344456667888999999999999984 32 1 11122222334445666 7899
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC-h
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVK---------GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD-P 399 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~ 399 (482)
++|++++..+......++..+|..+...|-. ....++|...|.+.-+.. ||...--.+...+.-.|. .
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcc
Confidence 9999999997666667788888888876532 124667778887766543 454332222222333332 2
Q ss_pred H---HHHHHH---HH-HHHcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 400 Y---VAIKFW---KY-MIENHCS---DLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 400 ~---~a~~~~---~~-m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+ +..++- .. +.++|.. .|.-.+..++.++.-.|+.++|.+..++|....
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 233333 11 1133432 233344677888888999999999999998663
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.19 Score=40.24 Aligned_cols=127 Identities=13% Similarity=-0.007 Sum_probs=100.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC---CCCChhh
Q 038748 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH---CSDLSET 420 (482)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~ 420 (482)
..|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3578877888999999999999999999999876666688888899999999999999999999988753 2343 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 474 (482)
.-.+...|...|++.+|...|+.....- |+...-......+.+.|+.+++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 4556688899999999999999998765 555444445556777886655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.4 Score=43.20 Aligned_cols=294 Identities=11% Similarity=-0.051 Sum_probs=169.2
Q ss_pred HHHHHHHHHh--hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH--HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 138 FASVFSSYVV--ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI--CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 138 ~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
|.+|-.+++- .|+-..|.++-.+..+. +.-|....-.|+.+- .-.|+++.|.+-|+-|....+.-..-..-|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4455555443 46777777766655432 233555555555443 345888888888888865211111122233333
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHh-
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNPGMT--FFKLAFEECLT- 289 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~li~~~~~- 289 (482)
..+.|+.+.|.+.-+..- +..|.-.-.+...+...+.. |+++.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 164 Aqr~GareaAr~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 164 AQRLGAREAARHYAERAA---EKAPQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHhcccHHHHHHHHHHHH---hhccCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 456788888888777764 44565556778888888888 88888888888765543 333322 12223322221
Q ss_pred --cCChhHHHHHHHHhhcccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 038748 290 --GQNLRGAEFIWGAMVGRIGFRPDTHM-YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 290 --~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 366 (482)
..+...|...-.+.. ++.||..- --.-..++.+.|+..++-.+++.+-+....|+ .+ .+....+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--
Confidence 234445555444443 44555332 22234567888888888888888887644443 22 22223445542
Q ss_pred HHHHHHHHHhC-CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHH
Q 038748 367 ASGLFNEMVKN-ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC-DMHMLPEAVKYAKG 443 (482)
Q Consensus 367 a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~ 443 (482)
+..-++...+. .++| +......+..+-...|++..|..--+.... ..|....|-.|...-. ..|+-.++...+.+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333222211 1222 445556677777788888887776666554 4566677776665543 44888888888877
Q ss_pred HHHc
Q 038748 444 MAEK 447 (482)
Q Consensus 444 m~~~ 447 (482)
....
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.079 Score=45.91 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=92.8
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC---ChhhHHHHHHHHHhcCCCCCHhh
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD---RVKDAITTFDVMEQYGCKHDVFA 172 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 172 (482)
..+-|...|-.|...|...|+++.|..-|....+..+.+...+..+..++..+. .-.++..+|+++..... -|+.+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence 355688999999999999999999999999999998889998988888876653 46789999999998653 47777
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDND 205 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 205 (482)
...|...+...|++.+|...++.|.+..+|+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888999999999999999998876666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.47 Score=45.63 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=45.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----------
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP----------- 453 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------- 453 (482)
+...+...+.+...+.-|-++|..|-+. ..++......++|.+|..+.++..+. .||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333344444455566666666665432 23445555666677766666654332 1221
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 454 FALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.-|...-++|.++|+..+|.++++++
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 22333445677777777777777765
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.19 Score=39.20 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 104 WNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 104 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
...+|..+...+.+.....+++.+...+..+...++.++..|++.+. .+.++.+.. ..+......++..|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 34455555555556666666666555554455555666666654422 222222221 12223334455555555
Q ss_pred CChHhHHHHHHHh
Q 038748 184 GKTIDAWQFLRVV 196 (482)
Q Consensus 184 g~~~~a~~~~~~~ 196 (482)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.25 Score=38.94 Aligned_cols=87 Identities=11% Similarity=-0.057 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (482)
+...|++++|..+|.-+...+.. +..-+..|..+|-..+++++|...|......+. -|...+.....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44566777777777666554433 344455566666666667777776666554332 2333344455566666777777
Q ss_pred HHHHHHHHH
Q 038748 438 VKYAKGMAE 446 (482)
Q Consensus 438 ~~~~~~m~~ 446 (482)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777666655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.058 Score=40.92 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
...|+..+..+++.+|+..|++..|.++++...+.+++.- ...+|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i-~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPI-PKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHh
Confidence 3568888888888888888888888888888888777544 466777777655544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=40.42 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GI-QVT-PFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666665422 11 111 3455566666667777777766666543
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.12 Score=48.85 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
...+.++..+-+.|-.+.|+.+...-.. -.....+.|+++.|.++.++. .+...|..|...+.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3455555555555555555554333211 123334445555554443222 24445555555555
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
+.|+++-|++.|.+.+ -|..|+-.|.-.|+.+...++.+..
T Consensus 359 ~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 5555555555555443 2344444444455544444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.028 Score=38.00 Aligned_cols=51 Identities=8% Similarity=-0.059 Sum_probs=20.5
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+.+++++|.++++.+..-.+.+...+.....++.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444333223333334444444444444444444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.53 Score=40.89 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=52.9
Q ss_pred HhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 111 LGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
....|++..|..+|.........+...-..++.+|...|+++.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 33455555555555555555544445555555555555555555555555543211111111112233333333333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 191 QFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.+-..... .+-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 224 ~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22222221 12244444444555555555555554444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.9 Score=40.50 Aligned_cols=128 Identities=10% Similarity=0.095 Sum_probs=60.3
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCC--
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCY--SN----ETGAAMKLLDEMVYNGA---FPDIQTYNILFEFLVKGRK-- 363 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~-- 363 (482)
+...+++.+. +.|+.-+..+|-+....... .. ...+|..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 80 EVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666663 55666665554442222221 11 24456667777766532 2333445444433 2222
Q ss_pred --HHHHHHHHHHHHhCCCccChh-hHHHHHHHHhcC-CC--hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038748 364 --LWEASGLFNEMVKNENVLNHE-NCRAAVRVYMDS-DD--PYVAIKFWKYMIENHCSDLSETGNLLV 425 (482)
Q Consensus 364 --~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~~~~~li 425 (482)
.+.++.+|+.+.+.|+..+-. -+.+-+-++... .. +..+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234556666666655544322 122222222221 11 335566666666666666655554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.092 Score=47.41 Aligned_cols=125 Identities=10% Similarity=-0.038 Sum_probs=70.2
Q ss_pred HHHHHhhCChhhHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQY-----GCK---------HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (482)
...|.+.|++..|..-|+..... +.. .-..+++.|..++.+.+++..|++..+....-.++|....
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34677888888888888876542 111 1123445555666666666666666666554445566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
---..+|...|+++.|...|+.+. .+.|+|..+-+.++...-+.....+...++|..|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~---k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL---KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666665 34665554444444444333122223344555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.7 Score=43.36 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=55.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQ 191 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 191 (482)
-+.|++++|...|-+-...--|+ .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 34666776666555433321122 3455555555566666666666666653 44445566666666666666655
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 192 FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
+.+....|.. ..-....+..+.+.+-.++|..+-.
T Consensus 453 fI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 453 FISKCDKGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5554443211 0012334444555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.1 Score=40.97 Aligned_cols=28 Identities=4% Similarity=0.041 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
..+.+++.+..-.|+.++|.+..++|.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3344444555555555555555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.8 Score=39.01 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNH---ENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.+-|.+.|.+..|..-+++|++. ..-+. ..+-.+..+|...|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 334566666666666666666665 11122 223345556666666666665544443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.19 Score=46.58 Aligned_cols=68 Identities=9% Similarity=-0.118 Sum_probs=59.1
Q ss_pred CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 97 DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 97 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+.+...|+.+..+|...|++++|+..|++..+.++.+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999998887555 45899999999999999999999999884
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=39.02 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
++.+..+|...|++++|++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=43.44 Aligned_cols=100 Identities=20% Similarity=0.094 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC-CC-CHhhHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGC-KH-DVFALNSLL 177 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll 177 (482)
.|+.-++.+ +.|++..|...|....+..+ -...++..|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 45567777777777777664 2455666777777777777777777777765411 11 224555566
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCC
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPD 203 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 203 (482)
.+..+.|+.++|..+|+++.+..+-+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 66666677777777777665544433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.34 Score=45.89 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=101.0
Q ss_pred HHHhhCCCcHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 109 DLLGKNCLFDAMWDAIKSMK-KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
....-+++++.+.++...-. -..+ +....+.++..+-+.|..+.|+++-..-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 44455788888777665111 1112 35668888888888899998887653321 2445667889999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -+..++-.+... |+.+...++.+.
T Consensus 336 ~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~-g~~~~L~kl~~~ 398 (443)
T PF04053_consen 336 IALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSST-GDREKLSKLAKI 398 (443)
T ss_dssp HHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHC-T-HHHHHHHHHH
T ss_pred HHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHh-CCHHHHHHHHHH
Confidence 987665543 377799999999999999999999888764 245556666666 888777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 268 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
....|- ++....++.-.|++++..+++.+.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666552 455566666678888877777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.1 Score=44.59 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----------------NETGAAMKLLDEMVYNGAFPDIQTYNILFE 356 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 356 (482)
++-....++.| ++.|+..|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..++.
T Consensus 88 veFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 88 VEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred HHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 33333344444 3455555555555555444332 123457888999999999999999999999
Q ss_pred HHHhcCC
Q 038748 357 FLVKGRK 363 (482)
Q Consensus 357 ~~~~~g~ 363 (482)
++.+.+-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 8877664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.5 Score=45.43 Aligned_cols=178 Identities=12% Similarity=0.018 Sum_probs=116.6
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-CCC------HHHHHHHHHHHHh----hCCh
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN-VLS------LATFASVFSSYVV----ADRV 151 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~------~~~~~~li~~~~~----~~~~ 151 (482)
-..-+|..+.. -. +.....+++..+=.||-+..++++.+..+.+ +.. .-.|..++..++. ....
T Consensus 175 ~G~G~f~L~lS--lL---Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLS--LL---PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHH--hC---CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 34566666665 22 3456677888888888888888888776654 211 2334444444443 4567
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHH-HHHHhcCChHhHHHHHHHhhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 152 KDAITTFDVMEQYGCKHDVFALNSLL-SAICRDGKTIDAWQFLRVVDG---R-IKPDNDTYAILLEGWEKERDVANAKKT 226 (482)
Q Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (482)
+.|.++++.+.+. .|+...|...- +.+...|++++|.+.|+.... . -+.....+--+.-++.-.++|++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 8889999988875 46666654433 556677999999999986332 1 223344555666778888999999999
Q ss_pred HHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-------HHHHHHHHHHHH
Q 038748 227 FGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-------YETVNSLKRMME 270 (482)
Q Consensus 227 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-------~~a~~~~~~m~~ 270 (482)
|..+.+...+. ...|.-+..++.-..++. ++|.++|.+...
T Consensus 328 f~~L~~~s~WS---ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKWS---KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccccH---HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99998764443 334544444444443777 899999887644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.14 Score=43.76 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=40.5
Q ss_pred hcCChHhHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 182 RDGKTIDAWQFLRVVDGRIKP---DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
+.|++..|...|....++.+- ....+-.|..++...|++++|..+|..+.+..+-.|....++--+..+.... |+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCH
Confidence 334455555555543332221 2223344555555555555555555555544333333333444444444444 555
Q ss_pred HHHHHHHHHHHH
Q 038748 259 YETVNSLKRMME 270 (482)
Q Consensus 259 ~~a~~~~~~m~~ 270 (482)
++|-.+|++..+
T Consensus 232 d~A~atl~qv~k 243 (262)
T COG1729 232 DEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.21 Score=46.27 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=67.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNH----ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGN 422 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 422 (482)
+...++.+..+|...|++++|...|+..++.+ |+. .+|..+..+|...|++++|++.+++.++.+ . ..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHH
Confidence 55678888999999999999999999988854 443 358889999999999999999999998752 1 1222
Q ss_pred HHHH--HHHhcCChhHHHHHHHHHHHcCC
Q 038748 423 LLVA--GLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 423 ~li~--~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.. .+..-.+.++..++++.+...|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122233456666666666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.17 Score=39.89 Aligned_cols=82 Identities=9% Similarity=-0.070 Sum_probs=37.5
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
..|++++|..+|.-+...++-+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 345555555555555444444444444444444444555555555544433321 2333333344444444555555544
Q ss_pred HHH
Q 038748 193 LRV 195 (482)
Q Consensus 193 ~~~ 195 (482)
|..
T Consensus 128 f~~ 130 (165)
T PRK15331 128 FEL 130 (165)
T ss_pred HHH
Confidence 444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.9 Score=43.71 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
+..++....=.|+-+.+++.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44444444445555555555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.16 Score=43.44 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh
Q 038748 310 RPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384 (482)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 384 (482)
+.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 44666666666666542 455666666677777777777777777766553322 122111
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
.-..++ -|= .+-+-+++++++|...|+-||..+-..|++++.+.+-
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111 111 1233467888999999999999888889998877664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.38 Score=36.10 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
.+...+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-++|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555566666666666655542 244555555566666666666666666666555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.8 Score=38.71 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHhhcccCC--CCCHHHHHHHHHHHHhcCC-
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLT--GQ----NLRGAEFIWGAMVGRIGF--RPDTHMYNMMISLYCYSNE- 328 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~- 328 (482)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+.+.+ .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567778888888888887777664433333 22 345688999999544433 2345556666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCccChhhHHHHHHH
Q 038748 329 ---TGAAMKLLDEMVYNGAFPDIQ--TYNILFEFLVKGRK--LWEASGLFNEMVKNENVLNHENCRAAVRV 392 (482)
Q Consensus 329 ---~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 392 (482)
.+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456788888888888765432 33333332222222 45788899999999998887776655443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.93 Score=35.33 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS 326 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 326 (482)
.++..+...+.......+++.+++. + ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555422 2 23444455555555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.9 Score=38.70 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=21.6
Q ss_pred hcCChHhHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 182 RDGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...+.++|+..+..... ....--.+|..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34555666555544221 122233455555566666666555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.56 Score=42.59 Aligned_cols=63 Identities=10% Similarity=-0.084 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+++.+.-+|.+.+++..|++..+..+..+ ++|......-..+|...|+++.|...|+++++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34455556666666666666666666544 2444444445556666666666666666666543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.6 Score=38.72 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=117.0
Q ss_pred HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--H--HHHHHHHHhcC
Q 038748 287 CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQT--Y--NILFEFLVKGR 362 (482)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~--~~ll~~~~~~g 362 (482)
....|+..+|-..+++++++ .+.|...+...=.+|...|+.+.-...++++... ..+|... | ....-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567788888888888643 3667777887788888889888888888887754 2233322 2 23334456788
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChhHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN---HCSDLSETGNLLVAGLCDMHMLPEAVK 439 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~ 439 (482)
-+++|++.-++..+.+.. |.-...+..+.+...|++.++.++..+-.+. +.-.-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 899999888888776533 6666677778888888898888876654421 111112334444445666788999999
Q ss_pred HHHHHHHcCC-CCCHH---HHHHHHHHHHHhccHHHHHHHH
Q 038748 440 YAKGMAEKGI-QVTPF---ALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 440 ~~~~m~~~~~-~~~~~---~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
+|+.=+-..+ +.|.. .|.-+.........+.+...+-
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 9986433332 34442 2333344444554555444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.071 Score=31.73 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
.++..+...|...|++++|+++|++..+. .|++...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHh
Confidence 35667777888888888888888888743 77766665544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.1 Score=40.03 Aligned_cols=352 Identities=11% Similarity=0.018 Sum_probs=201.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....+...|+.+|.---...+.+.+..+++.+....|.-..-|......=.+.|..+.+.++|++.+. |+..+...|..
T Consensus 40 ~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 40 NDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred cchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 44556677888887776666778888888888887766666677777777888999999999999887 46567777766
Q ss_pred HHHHHH-hcCChHhHHHHHHHhhC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH
Q 038748 176 LLSAIC-RDGKTIDAWQFLRVVDG--R-IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251 (482)
Q Consensus 176 ll~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 251 (482)
.+.-+. ..|+.+.....|+.... | .-.....|...|..-..++++.....++++.++- | ...++.....+
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P--~~~~~~~f~~f 192 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P--LHQLNRHFDRF 192 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h--hhHhHHHHHHH
Confidence 665544 45777777778887654 2 3345667888888888889999999999988752 3 22333333322
Q ss_pred HccC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhhcccCCCCCHHHHHHHH--
Q 038748 252 LKGC--------DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL-RGAEFIWGAMVGRIGFRPDTHMYNMMI-- 320 (482)
Q Consensus 252 ~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li-- 320 (482)
.+.. ...+++.++-...... ......+.. +......+... ..+-. -....+.+-
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~-~~s~~-l~~~~~~l~~~ 257 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDST-DPSKS-LTEEKTILKRI 257 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhcc-Cccch-hhHHHHHHHHH
Confidence 2210 1111111111111100 000001111 11111122211 10000 011111111
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHCC---CC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH
Q 038748 321 -----SLYCYSNETGAAMKLLDEMVYNG---AF----PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388 (482)
Q Consensus 321 -----~~~~~~~~~~~a~~~~~~m~~~g---~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 388 (482)
.++...-...+....|+.-...- ++ ++..+|+.-+.--...|+.+.+.-+|+...-- +..=...|-.
T Consensus 258 ~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWik 336 (577)
T KOG1258|consen 258 VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIK 336 (577)
T ss_pred HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHH
Confidence 11222222233333333333321 22 34567888888888999999999999887542 1112234555
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLC-DMHMLPEAVKYAKGMAEKGIQVTP-FALSKLKQILIKA 466 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~ 466 (482)
.++.....|+.+-|..++....+--+ |+......+-..+. ..|++..|..+++.+.+.- |+. ..-..-+....+.
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 56666666999999888877665432 33222223333333 4689999999999997664 443 2333344566677
Q ss_pred ccHHHHH
Q 038748 467 RKEAVYE 473 (482)
Q Consensus 467 g~~~~a~ 473 (482)
|+.+.+.
T Consensus 414 ~~~~~~~ 420 (577)
T KOG1258|consen 414 GNLEDAN 420 (577)
T ss_pred cchhhhh
Confidence 7777776
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.7 Score=37.07 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=28.5
Q ss_pred hCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 113 KNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+.|++++|.+.|+.+..+.+ -...+.-.++.++.+.+++++|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44556666666666555543 13444445555555556666666666555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.082 Score=31.44 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS 140 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (482)
+|..+...|...|++++|.++|+++.+..+.+...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 34455555555555555555555555555544444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.2 Score=40.13 Aligned_cols=78 Identities=9% Similarity=-0.072 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHH
Q 038748 280 FKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA-FPDIQTYNILFEF 357 (482)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~ 357 (482)
-..+..++.+.|+.++|.+.+.++.+.....-...+...|+.++...+.+.++..++.+-.+... +.-...|+..+--
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 34456667788999999999999975543223445777889999999999999999888654322 2223456665543
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1 Score=44.87 Aligned_cols=245 Identities=11% Similarity=0.094 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI----CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
....-+..+.+...++.|+.+-+.- + .|..+...+...| .+.|++++|...|-+-...+.|. .++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHH
Confidence 3445566666666676666654432 2 2333333444333 35677777776665544334443 2344
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038748 213 GWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 292 (482)
-|.....+.+-..+++.+.++ |+.- ...-..|+.+|.+. ++.++..++.+.-- .|.. ..-....+..|.+.+-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~-gla~--~dhttlLLncYiKl-kd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKK-GLAN--SDHTTLLLNCYIKL-KDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHc-cccc--chhHHHHHHHHHHh-cchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 455555566666666666643 5543 33455667777777 77766666655433 2211 1123455666666666
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
.++|..+-.... . +......+ +-..+++++|++.+..|.-...-+....|...+- ...+++-.+++-
T Consensus 479 l~~a~~LA~k~~-~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili 545 (933)
T KOG2114|consen 479 LDEAELLATKFK-K-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILI 545 (933)
T ss_pred HHHHHHHHHHhc-c-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHH
Confidence 666666654441 1 22222222 3445677888877766532212222233332221 234566666665
Q ss_pred HHHhCCCccChhhHHHH-----HHHHhcCCChHHHHHHHHHHHH
Q 038748 373 EMVKNENVLNHENCRAA-----VRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 373 ~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~ 411 (482)
+.......++....... -..+.-.+++..-..+++.|.+
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 55544332222222222 1223345667776667776664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=34.66 Aligned_cols=84 Identities=6% Similarity=0.040 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
..+-.-.....+.|++++|.+.|+.+..+.+ -...+.-.++.+|.+.+++++|...+++.++....--..-|-..+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3333444555677999999999999998875 3567788889999999999999999999988754333345666666
Q ss_pred HHHhcCC
Q 038748 179 AICRDGK 185 (482)
Q Consensus 179 ~~~~~g~ 185 (482)
+++....
T Consensus 91 gL~~~~~ 97 (142)
T PF13512_consen 91 GLSYYEQ 97 (142)
T ss_pred HHHHHHH
Confidence 6655433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.00 E-value=3 Score=38.69 Aligned_cols=386 Identities=8% Similarity=0.012 Sum_probs=195.9
Q ss_pred cCCCCCHHHHHHHHHhhcCCchhHhHHhh-hhhcCCCCCC------------CHhhHHHHHHHHhhCCCcHHHHHHHHHH
Q 038748 61 TLIRVSQETVEQVLKFSYSHPGPAVKFFR-WSAYQLNDKH------------SPYAWNLVVDLLGKNCLFDAMWDAIKSM 127 (482)
Q Consensus 61 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~-~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 127 (482)
.|..+--..+..++....++.+.|++.+. |-....+..+ |-..=+..++.+...|++.++..+++++
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44445555666666667788888988887 5444222221 1122344566777899999999999998
Q ss_pred HhcCC-----CCHHHHHHHHHHHHhh--------CChhhHHHHH-------HHHHhc------CCCCCHhhHHHHHHHHH
Q 038748 128 KKENV-----LSLATFASVFSSYVVA--------DRVKDAITTF-------DVMEQY------GCKHDVFALNSLLSAIC 181 (482)
Q Consensus 128 ~~~~~-----~~~~~~~~li~~~~~~--------~~~~~a~~~~-------~~~~~~------~~~~~~~~~~~ll~~~~ 181 (482)
...-. -+..+|+.++-.+.+. ...+-+...| .+|... .+.|.......++.-..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 87653 3778888755444332 1222222222 222211 23343333443433322
Q ss_pred hc--CChHhHHHHHHHhhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHh--cCCCCCChhhHHHHHHHHHccC
Q 038748 182 RD--GKTIDAWQFLRVVDG-RIKPDN-DTYAILLEGWEKERDVANAKKTFGEMVIE--VGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 182 ~~--g~~~~a~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
-. ....--.++++.... -+.|+. -+...++..+.. +.+++..+-+.+... ..+...-+.++..++....+.
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~- 311 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ- 311 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11 122222333333322 233332 223334443333 333333333222210 001111345677777777777
Q ss_pred CChHHHHHHHHHHHHcC--------CCCCHHHHHHHHH-HHHhcCChhHHHHHHHHhhcccCCCCCHH-HHHHH---HHH
Q 038748 256 DGIYETVNSLKRMMERG--------CNPGMTFFKLAFE-ECLTGQNLRGAEFIWGAMVGRIGFRPDTH-MYNMM---ISL 322 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l---i~~ 322 (482)
++...|.+.+.-+.... +-....+...++. -=...-+...-..+|.... ...+ |.. ....| ..-
T Consensus 312 ~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~Di--DrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDI--DRQQLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcc--cHHHHHHHHHHHHHH
Confidence 77777777766554321 1112222222221 0001112233344444442 3322 211 11112 233
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCccChh----hHHHHH
Q 038748 323 YCYSNE-TGAAMKLLDEMVYNGAFPDIQTYNILF----EFLVK---GRKLWEASGLFNEMVKNENVLNHE----NCRAAV 390 (482)
Q Consensus 323 ~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li 390 (482)
+.+.|. -++|+++++...+-- .-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|+.|-.. .-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 555555 778888888777641 11332222222 23322 234566666666677777765433 333333
Q ss_pred HH--HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 391 RV--YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 391 ~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.. ++|+..++++=+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHHH
Confidence 32 4467888888766555555 778888998888888888899999998876 456666665533
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2 Score=36.49 Aligned_cols=224 Identities=13% Similarity=-0.004 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCh
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYLITLLKGCDGIYETVNSLKRMMER-GCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~ 293 (482)
.+....+...+...... .+. ....+......+... +.+..+...+...... ........+......+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALEL---LPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhc---CccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 45666666666666532 221 234566666777777 8888888888777653 2334555666667777777888
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMIS-LYCYSNETGAAMKLLDEMVYNGA--FPDIQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
..+...+.... .....+ ......... .+...|+++.|...+........ ......+......+...++.+.+...
T Consensus 112 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 EEALELLEKAL-ALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHH-cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 88888888775 222122 122222222 67778888888888888755211 11223333344445667788888888
Q ss_pred HHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 371 FNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+....+.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+++...+.+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8887765322135566677777777778888888888777643 32 2334444444446667788887777776554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.1 Score=38.58 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhH-HHHH
Q 038748 313 THMYNMMISLYCYSNETGAAMKLLDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENC-RAAV 390 (482)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 390 (482)
..+|...+....+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--... .||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888888888999999999999998 6788889999998775 56778899999876554 3344443 4566
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHCSDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLK 460 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 460 (482)
..+...++-+.|..+|+..+++ +.-+ ...|..+|.-=..-|+...+..+-++|.+.- |...+.....
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~--pQen~~evF~ 542 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV--PQENLIEVFT 542 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc--CcHhHHHHHH
Confidence 6777889999999999965532 1122 3688999988888899999988888887643 4443433333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.38 Score=41.94 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
++..++..+...|+++.+.+.++++....+-+...|..+|.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.4 Score=42.41 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Q 038748 454 FALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
.....|+.++...|..+.|.++-+
T Consensus 1185 ~E~~~Ll~~l~~~g~~eqa~~Lq~ 1208 (1265)
T KOG1920|consen 1185 NELKRLLEVLVTFGMDEQARALQK 1208 (1265)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHH
Confidence 345567777777777776665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.9 Score=37.11 Aligned_cols=152 Identities=8% Similarity=-0.074 Sum_probs=108.7
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH----hhHHHHHHHHHhcCChH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDV----FALNSLLSAICRDGKTI 187 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~ 187 (482)
-.+|++.+|-..++++.+..+.+.-++...=.+|...|+...-...++++... -.+|. +.-....-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34678888888899999888878888888888899999988888888888764 12333 22233334556789999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---hhhHHHHHHHHHccCCChHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN---VPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
+|++.-++..+-.+.|...-.+..+.+-..|+..++.++..+-.. .+.-.. ..-|-.....++.. +.++.|+++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted--~Wr~s~mlasHNyWH~Al~~iE~-aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED--DWRQSWMLASHNYWHTALFHIEG-AEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc--chhhhhHHHhhhhHHHHHhhhcc-cchhHHHHH
Confidence 999888887666677888888888888889999999887766542 111100 11233334455666 889999999
Q ss_pred HHH
Q 038748 265 LKR 267 (482)
Q Consensus 265 ~~~ 267 (482)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 874
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.2 Score=34.44 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHhcCChHhHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKP---DNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
..+.|++++|.+.|+.+....+. ....-..++.+|.+.+++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556666666666666553332 233445566666666666666666666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=3 Score=39.04 Aligned_cols=133 Identities=8% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC--------CChHHHHHHHHHHH
Q 038748 205 DTY--AILLEGWEKE-----RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--------DGIYETVNSLKRMM 269 (482)
Q Consensus 205 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~~~a~~~~~~m~ 269 (482)
..| ..++.+.... ...+.|..+|.+......++|+...+|..+..++.... ....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 23567788888887555778876766666655554430 12233344444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
+.+ +-|......+..+..-.++++.|...|++.. .+.|| ..+|........-+|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 332 2244444444444444555555555555553 22333 22222222223334555555555555433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.1 Score=37.67 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP---DIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
...+|..++..+.+.|+++.|...+..+...+... +......-+..+-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567777777888888888888888777643211 2233333445556677778888887777763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=4.4 Score=38.02 Aligned_cols=129 Identities=6% Similarity=-0.038 Sum_probs=68.2
Q ss_pred hhH--HHHHHHHhhC-----CCcHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhh---------CChhhHHHHHHHHH
Q 038748 102 YAW--NLVVDLLGKN-----CLFDAMWDAIKSMK---KENVLSLATFASVFSSYVVA---------DRVKDAITTFDVME 162 (482)
Q Consensus 102 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~ 162 (482)
..| ..++.+.... ...+.|..+|.+.. ..++.....|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 13456777888877 44443455565555554332 22344555555555
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 163 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+.+. -|......+..+..-.++++.|..+|++...-.+....+|....-.+.-.|+.++|.+.+++..
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5442 3555555555555555666666666666444333334444444444445566666666666543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.4 Score=33.80 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=65.5
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhh-HHHH--
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL--ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFA-LNSL-- 176 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l-- 176 (482)
..|..-+. +++.+..++|+.-|..+.+.|.-+- -..-.......+.|+...|...|+++-.....|-..- .--|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 2344556666666666666554221 1112222334455666666666666654332232221 1111
Q ss_pred HHHHHhcCChHhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChh
Q 038748 177 LSAICRDGKTIDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
.-.+...|.++....-.+-+.. +.+--...-..|.-+-.+.|++.+|.++|..+... ...|.++.
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~aprnir 204 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAPRNIR 204 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCcHHHH
Confidence 1123455666666555555432 22333334445555555666666666666666543 34444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.9 Score=38.67 Aligned_cols=45 Identities=4% Similarity=0.009 Sum_probs=23.2
Q ss_pred hhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..+.+.++|+..|..-..+-- .-..+|..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345556666666655444321 123445555666666666555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.3 Score=39.11 Aligned_cols=59 Identities=5% Similarity=0.045 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC-------hhhHHHHHHHHHhc
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR-------VKDAITTFDVMEQY 164 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~ 164 (482)
.+|-.|.+.|++++|.++..+...........+...+..|....+ -+....-|+...+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 456778889999999998866665544445567777777766532 23445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4.3 Score=36.11 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=10.7
Q ss_pred HHhcCChhHHHHHHHH
Q 038748 428 LCDMHMLPEAVKYAKG 443 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~ 443 (482)
+.+.+++++|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456777777777764
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.74 Score=40.21 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444444444444444444443322 44444444555555555444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.92 E-value=9.7 Score=40.04 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM 394 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (482)
.|.+....+.....+++|--.|+..-+ ....+.+|..+|+|.+|+.+...+....-. -..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 344444445556667776666654322 133456677778888887777766432111 1112245666777
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
..+++-+|-++..+.... ..-.+..|++...|++|.++....
T Consensus 1011 e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 778877777777665431 123345566777777777766544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.84 E-value=3.6 Score=34.84 Aligned_cols=53 Identities=25% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENH---CSDLSETGNLLVAGLCDMHMLPEAVKYA 441 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (482)
..|-.|.-..++..|.+.++.--..+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444455555555555433211 111224444455444 234444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.3 Score=32.17 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
..-.|.+++..++..+.... .+..-+|-++...... -+-+-..+.++.+-+. .|.. ..|++
T Consensus 12 ~ildG~V~qGveii~k~v~S-----sni~E~NWvICNiiDa-a~C~yvv~~LdsIGki---FDis----------~C~Nl 72 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS-----SNIKEYNWVICNIIDA-ADCDYVVETLDSIGKI---FDIS----------KCGNL 72 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH-----S-HHHHTHHHHHHHHH---HHHHHHHHHHHGGG---S-GG----------G-S-T
T ss_pred HHHhchHHHHHHHHHHHcCc-----CCccccceeeeecchh-hchhHHHHHHHHHhhh---cCch----------hhcch
Confidence 34567788888887777643 2556677777777666 5555555555554332 1211 22344
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 373 (482)
......+..+ ..+......-+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+
T Consensus 73 KrVi~C~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 73 KRVIECYAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444444333 123444566677788888888888888887752 356778888888999999999999999999
Q ss_pred HHhCCCc
Q 038748 374 MVKNENV 380 (482)
Q Consensus 374 ~~~~~~~ 380 (482)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.42 E-value=7.2 Score=36.92 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=24.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCc-cChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENV-LNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33334445555555555555433211 12223334555555555555555555444
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=4 Score=33.88 Aligned_cols=65 Identities=18% Similarity=0.063 Sum_probs=43.4
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
-+.+||.+.-.+...|+++.|.+.|+...+.++....+...-.-++.-.|++..|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 35778888888888888888888888888877643333322222334457888887766666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.1 Score=32.24 Aligned_cols=90 Identities=12% Similarity=-0.084 Sum_probs=50.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCh
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS---ETGNLLVAGLCDMHML 434 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~ 434 (482)
+...|+++.|++.|...+..-++ ....||.-..++--.|+.++|++-+++..+..-.-.. ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45566666666666666554322 4556666666666666666666666666543111111 1222223345556777
Q ss_pred hHHHHHHHHHHHcC
Q 038748 435 PEAVKYAKGMAEKG 448 (482)
Q Consensus 435 ~~A~~~~~~m~~~~ 448 (482)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666666555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.5 Score=34.29 Aligned_cols=87 Identities=8% Similarity=0.018 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...|.....+|-...++++|...+.+..+. .+.+...|.+ ...++.|.-+.+++.. +.--+..|+-....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k-lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK-LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 344555556666666666666665555431 1112222211 1123333333333332 111123344555566
Q ss_pred HhcCCHHHHHHHHHHh
Q 038748 215 EKERDVANAKKTFGEM 230 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~ 230 (482)
..+|..+.|-..+++.
T Consensus 102 ~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKA 117 (308)
T ss_pred HHhCCcchHHHHHHHH
Confidence 6666666665555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.8 Score=37.91 Aligned_cols=48 Identities=4% Similarity=-0.076 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.7 Score=35.46 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVL---SLATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
..+..+...|.+.|+.+.|++.|.++.+.-.. -...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555566666666666666655554321 233444555555555555555555544433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=3.7 Score=32.72 Aligned_cols=53 Identities=6% Similarity=0.039 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
...|.++....-++-+-. .-.|-...+-..|..+.++. |++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~--d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccC--CCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence 344555555544444431 22222233344444444455 555555555555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.5 Score=35.72 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 349 QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 349 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+..+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455666667777777777777777665533322 2234556666666667666666665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.9 Score=31.55 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=18.5
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
+..|+.+.|++.|.+....- +-....||.-..++--.|+.++|+.=+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHH
Confidence 33344444444444443321 113333444444444444444444333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.63 Score=32.73 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
++.+-++.+....+.|++....+.+++|-+.+|+..|..+|+-++.+...+...|..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 4444555555555566666666666666666666666666665553333333344443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.69 E-value=5.5 Score=39.45 Aligned_cols=185 Identities=14% Similarity=-0.017 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCChhHHHHHHHHhhcc------cCCCCCHHHHHHHHHHHHhcC-
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAF--EE-CLTGQNLRGAEFIWGAMVGR------IGFRPDTHMYNMMISLYCYSN- 327 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~- 327 (482)
...+.++++...+.|..-. ......+ .. +....+.+.|..+|+.+.+. .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a-~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEA-QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 5678888888888773221 1111222 22 34567889999999988531 33 3335566677776643
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHh--cCCChH
Q 038748 328 ----ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK-GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYM--DSDDPY 400 (482)
Q Consensus 328 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~ 400 (482)
+.+.|..++.+..+.|. |+...+-..+.-... ..+...|.++|......|.. ....+..++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56779999988888765 354444333322222 24577899999998888754 2222222222222 234688
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (482)
.|..+++...+.|. |....--..+..+.. ++++.+.-.+..+.+.|.+
T Consensus 382 ~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 88889988888873 332222222333444 7888888888777777754
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.5 Score=31.32 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+-++.+....+.|++.+..+.+.+|-+.+++..|..+|+.++....+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 34444555555555666666666666666666666666666655543333222444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.35 Score=27.15 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556667777777777777777764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.15 E-value=5.2 Score=32.06 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=46.6
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 298 FIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
+++..+. +.++.|+...+..+|..+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--+|.+.
T Consensus 15 EYirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3444442 45566666666666666666665433 3344444555555544444332222 222233333333221
Q ss_pred CCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 378 ENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 378 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
= ...+..+++.+...|++-+|.++.+..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 012334555555566666666655543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.2 Score=39.05 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
+.++++.++..=+ +.|+-||..+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555544 555566666666666666666665555555544443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.56 E-value=8.9 Score=33.53 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 038748 386 CRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFALS 457 (482)
Q Consensus 386 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~~ 457 (482)
++.....|..+|.+.+|.++.+.....+ +.+...|-.|+..+...|+--.|.+-++++. +.|+..+..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445567778888888888888777654 3455677777888888888777777776663 346666655543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.26 E-value=15 Score=35.62 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh-CCCcHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhhCChhhH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK-NCLFDAMWDAIKSMKKEN---VLSLATFASVFSSYVVADRVKDA 154 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 154 (482)
|..+.+.++|+.-.. +.+.+...|...+..++. .|+.+.....|+...... ..+...|...|.--..++++...
T Consensus 93 g~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 556778888887766 788888888888877665 577788888888877653 35777888888888888899999
Q ss_pred HHHHHHHHhc
Q 038748 155 ITTFDVMEQY 164 (482)
Q Consensus 155 ~~~~~~~~~~ 164 (482)
..+++..++.
T Consensus 171 ~~iyeRilei 180 (577)
T KOG1258|consen 171 ANIYERILEI 180 (577)
T ss_pred HHHHHHHHhh
Confidence 9999998873
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.51 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+|..|...|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777788888888888777743
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.3 Score=27.05 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=12.4
Q ss_pred HhcCCCCHHHHHHHHHHHHhhCChhhH
Q 038748 128 KKENVLSLATFASVFSSYVVADRVKDA 154 (482)
Q Consensus 128 ~~~~~~~~~~~~~li~~~~~~~~~~~a 154 (482)
.+.++.+..+|+.+...|...|++++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.99 E-value=10 Score=33.27 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555555443221 23334445555555555555555555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.9 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.+..+. ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHH
Confidence 455666677777777888888888888999999999999999888773232 22444565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.38 E-value=8 Score=30.99 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 262 VNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 262 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
++.++.+.+.+++|+...+..+++.+.+.|++....+++. .++-+|.......+-.+. +....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 4555667778899999999999999999998876666554 344566555444443332 233444444444444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 342 NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 342 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
. -...+..+++.+...|++-+|..+.+..... +......++.+-.+.+|...-..+++-..+.
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 1124566778888999999999988775332 2223345677777777766666666655543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=16 Score=34.44 Aligned_cols=203 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
.|...-...-|.--...|++-.|-+-+...+....-.|+.....+.| +...|+++.+...+...... +.....+..+
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~ 362 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRC 362 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
+++...+.|++++|..+-..|....++ +..........--..|-++++...|+++.... +|...-|-.++..-.--++
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~-~~~~~g~v~~~~~~~~~~~ 440 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN-PETQSGWVNFLSSTQYFND 440 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC-ChhcccceeeeccceeccC
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhhC
Q 038748 434 LPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKAH 482 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 482 (482)
...--+.|..-+... ..+.......+....+-.+.--....++++.+|
T Consensus 441 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (831)
T PRK15180 441 GNAFSEAFHAGIQSQ-RLNDTFMETALSLAIKFSDELIFMHALEQLLRH 488 (831)
T ss_pred cchHHHHHHhhhhhh-hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.14 Score=40.25 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHM 433 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (482)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666677778888888888888766556677888888888888777777777661 111233456677777888
Q ss_pred hhHHHHHHHHH
Q 038748 434 LPEAVKYAKGM 444 (482)
Q Consensus 434 ~~~A~~~~~~m 444 (482)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 88888887765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.75 E-value=8.7 Score=30.42 Aligned_cols=50 Identities=16% Similarity=-0.088 Sum_probs=23.0
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+.++.+.+..++.-+.---+-....-..-...+...|+|.+|.++|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44555566555555443111111111112233455666666666666654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=19 Score=34.32 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=91.3
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
....|....-+++..++.+..+.-...+-.+|..-| .+...|..++++|... ..+.-..+++++.+..+. |++.-..
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 344566666777777777777777777777777655 3445577777777776 456666777777665432 3333333
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHH
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKP------DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~ 249 (482)
|..-| ..++...+..+|..+...+-| -...|.-+...- ..+.+....+...+....|..- -...+.-+-.
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR-GSVLMQDVYK 213 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch-HHHHHHHHHH
Confidence 33333 336666666666664332222 112343333321 3445555555555554434333 2233333334
Q ss_pred HHHccCCChHHHHHHHHHHHHcC
Q 038748 250 TLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
.|-.. .++++|++++..+.+..
T Consensus 214 ~Ys~~-eN~~eai~Ilk~il~~d 235 (711)
T COG1747 214 KYSEN-ENWTEAIRILKHILEHD 235 (711)
T ss_pred Hhccc-cCHHHHHHHHHHHhhhc
Confidence 44444 66666666666655543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.9 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+.|. ....|..++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 33455666666777778888888888888888888888888888887433332 222565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.41 E-value=12 Score=31.52 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 149 DRVKDAITTFDVMEQYGCK-HDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
+....+...+......... .....+......+...+.+..+...+..... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 1234455555555566666666555555432 233444455555555555555666666
Q ss_pred HHHHhH
Q 038748 226 TFGEMV 231 (482)
Q Consensus 226 ~~~~~~ 231 (482)
.+....
T Consensus 117 ~~~~~~ 122 (291)
T COG0457 117 LLEKAL 122 (291)
T ss_pred HHHHHH
Confidence 665554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.12 E-value=9 Score=29.83 Aligned_cols=53 Identities=2% Similarity=-0.203 Sum_probs=35.1
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
..++++++..+++.|.--.+.....-..-...+...|+|.+|..+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 47778888888888777655332222223344567788888888888887753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.72 E-value=4.4 Score=33.40 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG----RIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
=+.|.+.|-.+...+.--++...-.|...|. ..+.+++..++....+ +..+|+..+..|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3677777878877765556555555555555 5678888887766432 34778888999999999888888774
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.37 E-value=24 Score=33.70 Aligned_cols=181 Identities=12% Similarity=0.002 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
..|.....+++..++.+....-.+.+..+|+ .. ..+...|..++.+|..+ ..++-..+|+.+.+..+. |.+.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l-~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVL-EY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHH-Hh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 3456667777777877777777788877776 32 34666777788888777 556677788877775443 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCcc--C---hhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCCChhhHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVL--N---HENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSDLSETGNLLVAG 427 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~ 427 (482)
|..-|.+ ++.+.+..+|.++...-+.- + ...|.-++... ..+.+....+...+.. .|..--...+.-+..-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444444 77777888887776542210 1 12344443322 3456666666666553 3433334555566667
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 463 (482)
|....++++|++++..+.+.+- -|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 7778888888888887776653 2444444555444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.17 E-value=3.7 Score=34.14 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
.++.+.+.+...+++....+-.+..+.+...-..+++.++-.|+|++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444444555555555554444444444444444555555555555554444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.15 E-value=18 Score=31.88 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCccChhhHHHHHHHHhcCCChHHHHH
Q 038748 329 TGAAMKLLDEMVY-NGAFPDIQTYNILFEFLVK-GR-KLWEASGLFNEMVKN-ENVLNHENCRAAVRVYMDSDDPYVAIK 404 (482)
Q Consensus 329 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 404 (482)
+.+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555542211 1233355555555555544 11 222223333333322 345566666677777777777777777
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH-----HHcCCCCCHHHHHHHHHHH
Q 038748 405 FWKYMIEN-HCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM-----AEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 405 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~~~~~~~~~l~~~~ 463 (482)
+|+..... +..-|...|..+|+.....|+..-..++.++- ++.|+..++..-..+-+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77766644 44556667777777777777776666665542 3445555555554444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.14 E-value=57 Score=37.73 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=97.9
Q ss_pred HHHHHHHhhCChhhHHHHHHHH----HhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHH-hhCCCCCCHHHHHHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVM----EQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRV-VDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~ 214 (482)
.+..+-.+.+.+.+|...++.- ++.. .....|-.+...|+..+++|...-+... .. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4455667788899999988883 2211 1233444455589999999988777664 22 122 22334456
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMT-FFKLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~ 293 (482)
...|++..|...|+.+. +..|+....++-++...... +.++.++-..+-..... .+... .++.-+.+-.+.+++
T Consensus 1460 e~~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~-~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAI-QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HhhccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcc-cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcch
Confidence 67899999999999996 56887777888888888888 88888877655544432 22222 223334555677888
Q ss_pred hHHHHHHH
Q 038748 294 RGAEFIWG 301 (482)
Q Consensus 294 ~~a~~~~~ 301 (482)
+..+..+.
T Consensus 1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred hhhhhhhh
Confidence 77776655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.25 Score=38.72 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD 397 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 397 (482)
.+|..+.+.+.++....+++.+...+..-+....+.++..|++.+..++...+++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 367778888999999999999998776677889999999999998888888887721 1122346778888888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 398 DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 398 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
-+++|.-++..+....- .+..+...++++.|.+++.+. .++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 88888877766432211 111133445666666444332 457788888877765544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.83 E-value=33 Score=34.66 Aligned_cols=188 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhcccCCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCH
Q 038748 293 LRGAEFIWGAMVGRIGFRP--DTHMYNMMISLYC-YSNETGAAMKLLDEMVYNGAFPDI-----QTYNILFEFLVKGRKL 364 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~ 364 (482)
+..|.+.++.+.++..+.| +..++-.+...+. ...+++.|+..+.+....--.++. ..-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Q ss_pred HHHHHHHHHHHhC----CCccChhhHHHH-HHHHhcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHH--hcCCh
Q 038748 365 WEASGLFNEMVKN----ENVLNHENCRAA-VRVYMDSDDPYVAIKFWKYMIENH---CSDLSETGNLLVAGLC--DMHML 434 (482)
Q Consensus 365 ~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~ 434 (482)
. |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+...- ..|....+-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Q ss_pred hHHHHHHHHHHHcCCCC---------CHHHHHHHHH--HHHHhccHHHHHHHHHHHhh
Q 038748 435 PEAVKYAKGMAEKGIQV---------TPFALSKLKQ--ILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~---------~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 481 (482)
+++.+.++++......+ ...+|..+++ ++...|+.+.+...++++.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.78 E-value=12 Score=31.69 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=10.5
Q ss_pred HHhhCCCcHHHHHHHHHH
Q 038748 110 LLGKNCLFDAMWDAIKSM 127 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~ 127 (482)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344455666666666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=29.53 Aligned_cols=53 Identities=9% Similarity=-0.173 Sum_probs=31.5
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+.++.+++..++..+.--.+-....-..-...+...|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44567777777777776655433322233334456667777777777776654
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=10 Score=36.29 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC
Q 038748 55 EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS 134 (482)
Q Consensus 55 ~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (482)
...+...|+.+++..+..+.+.+.|+...|+.+++.+..- + ....++..+...+ |..+
T Consensus 190 ~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~-~--~~~it~~~V~~~l-------------------g~~~ 247 (484)
T PRK14956 190 EKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVF-T--DSKLTGVKIRKMI-------------------GYHG 247 (484)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHh-C--CCCcCHHHHHHHh-------------------CCCC
Confidence 3444456788888888888888888888888888764331 1 1112333332222 4456
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF 171 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (482)
...+..++.++...+....|+.+++.+.+.|..|...
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666677776666566678888888888888665443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.21 E-value=5.8 Score=32.69 Aligned_cols=72 Identities=11% Similarity=-0.022 Sum_probs=36.3
Q ss_pred HhHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCCChhhHHHHHHHHHccCCChHHH
Q 038748 187 IDAWQFLRVVDG-RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGW--DPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 187 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
+.|...|-.+.. +.--++.....+...|. ..+.+++..++.+...-..- .+ ++..+.+|+..+.+. ++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-n~eil~sLas~~~~~-~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-NPEILKSLASIYQKL-KNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHh-cchhhh
Confidence 344444444443 22233444444444333 55666666666665532111 22 455666666666666 666655
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.87 E-value=38 Score=34.34 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHH
Q 038748 326 SNETGAAMKLLDEMVYNG-AFPDI--QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVA 402 (482)
Q Consensus 326 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 402 (482)
..+.+.|..++....... ..+.. .....+.......+...++...+....... .+.....--+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888887764432 22211 223333333333322456666666544322 2333444445555577888887
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
...+..|....- -...-.-=+..++...|+.++|..+|++..
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777654221 111222224455556788888888888763
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.71 E-value=41 Score=34.59 Aligned_cols=303 Identities=9% Similarity=0.022 Sum_probs=145.6
Q ss_pred CCCHhhHHHHHHHHhhCCC--------cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc-----
Q 038748 98 KHSPYAWNLVVDLLGKNCL--------FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY----- 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 164 (482)
.+.-+.|..+..-+.+..- .+--..-.+.....|.|+. .|......|+++.|..+++.....
T Consensus 320 ~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~e-----AI~hAlaA~d~~~aa~lle~~~~~L~~~~ 394 (894)
T COG2909 320 EGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSE-----AIDHALAAGDPEMAADLLEQLEWQLFNGS 394 (894)
T ss_pred CCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHH-----HHHHHHhCCCHHHHHHHHHhhhhhhhccc
Confidence 3445666666665554321 1112223344455555542 244445567777777776654110
Q ss_pred ----------CCCCCHhhHH----HHHH--HHHhcCChHhHHHHHHHhhCCCCC-----CHH---HHHHHH-HHHHhcCC
Q 038748 165 ----------GCKHDVFALN----SLLS--AICRDGKTIDAWQFLRVVDGRIKP-----DND---TYAILL-EGWEKERD 219 (482)
Q Consensus 165 ----------~~~~~~~~~~----~ll~--~~~~~g~~~~a~~~~~~~~~~~~~-----~~~---~~~~l~-~~~~~~~~ 219 (482)
++ |+....+ .++. .......+++|..+..++....++ ... .++.+- ......|+
T Consensus 395 ~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~ 473 (894)
T COG2909 395 ELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD 473 (894)
T ss_pred chHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC
Confidence 11 2221111 1222 234567888888888876542211 211 233332 22345788
Q ss_pred HHHHHHHHHHhHHhcC---CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHhcC
Q 038748 220 VANAKKTFGEMVIEVG---WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA-----FEECLTGQ 291 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----i~~~~~~g 291 (482)
+++|.++.+....... ..+ ....+..+..+..-. |++++|..+..+..+..-.-+...+..+ ...+...|
T Consensus 474 ~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~-G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 474 PEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIR-GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHh-chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 8999888887764311 111 234455555666666 9999998888766554222233333222 23345566
Q ss_pred Chh--HHHHHHHHhhcccCC-----CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhc
Q 038748 292 NLR--GAEFIWGAMVGRIGF-----RPDTHMYNMMISLYCYS-NETGAAMKLLDEMVYNGAFPDIQT--YNILFEFLVKG 361 (482)
Q Consensus 292 ~~~--~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 361 (482)
... +.+..|.....+... .+-..++..+..++.+. +...++..-+.........|-... +..++......
T Consensus 552 q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~ 631 (894)
T COG2909 552 QVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR 631 (894)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc
Confidence 333 233333333211111 11233444555555441 111222222222222212222222 23566777889
Q ss_pred CCHHHHHHHHHHHHhCCCcc----ChhhHHHHHH--HHhcCCChHHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVL----NHENCRAAVR--VYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~--~~~~~~~~~~a~~~~~~ 408 (482)
|+.++|...+.++......+ +...-...+. .....|+.+.+.....+
T Consensus 632 Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 632 GDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99999999888887653322 2222222222 23456777777666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.6 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444555444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.13 E-value=23 Score=31.17 Aligned_cols=144 Identities=11% Similarity=0.139 Sum_probs=89.9
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHh-hC-ChhhHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-N-VLSLATFASVFSSYVV-AD-RVKDAITT 157 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~li~~~~~-~~-~~~~a~~~ 157 (482)
++-..+++....+........ |..++. ++....+|+++|+..... . +.+..+...+++.... .+ ....--++
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEv 188 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEV 188 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHH
Confidence 444555555444222222211 555443 234456777777744332 2 3677777788877766 22 22222333
Q ss_pred HHHHHhc-CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 158 FDVMEQY-GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGE 229 (482)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (482)
.+.+... |-.++..+...++..+++.+++.+..++++.... +...|...|...|+.-.+.|+..-...+.++
T Consensus 189 V~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 189 VDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3333332 4567778888888889999999998888887544 4666888889999999999988877777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.10 E-value=12 Score=30.83 Aligned_cols=90 Identities=16% Similarity=0.015 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 038748 357 FLVKGRKLWEASGLFNEMVKNENVLN----HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDM 431 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 431 (482)
-+...|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|++-....++.+ |+. .....-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 47789999999999999988633222 2234445567888999999999888888755 321 2333335678889
Q ss_pred CChhHHHHHHHHHHHcC
Q 038748 432 HMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 432 g~~~~A~~~~~~m~~~~ 448 (482)
..+++|+.-|.++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998876
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.03 E-value=5.9 Score=33.02 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHh---hCCCCCCHHHHHHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV---DGRIKPDNDTYAILLEG 213 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~l~~~ 213 (482)
|.+..+..+.+.+..++++.+.+.-++... .|..+-..++..+|-.|++++|..-++.. .....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567778888999999999888777643 36667788889999999999998766654 33556667778887765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.9 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 419 ETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777888888888777764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=43 Score=33.99 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=113.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...-+....+....|+.++|......+-..|.......+.++..+.+.|.+.... ++..|...=...+...-..++
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4566666777788888888777777777776666655666777777777666544332 222221110011222222222
Q ss_pred HHHHh------------cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhHHhcCCCCCCh-h
Q 038748 178 SAICR------------DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW--EKERDVANAKKTFGEMVIEVGWDPDNV-P 242 (482)
Q Consensus 178 ~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~p~~~-~ 242 (482)
..+.. ..+...+..++. ..+++...-..++.++ ....+.+.|..++.......++.+... .
T Consensus 205 ~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 205 KQLPADYQTIASALIKLQNDPNTVETFAR----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred HhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 21100 011111111111 1122321111111122 234556778888877654433433221 1
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISL 322 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 322 (482)
.+..+....... +...++...++...... .+......-+......++++.+...+..|.... .-...-..-+..+
T Consensus 281 ~~~~lA~~~a~~-~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~--~~~~rw~YW~aRa 355 (644)
T PRK11619 281 LRDIVAWRLMGN-DVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh--ccCHhhHHHHHHH
Confidence 223333333332 22555555555443222 233334444455557778877777777774222 2233444556666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038748 323 YCYSNETGAAMKLLDEMV 340 (482)
Q Consensus 323 ~~~~~~~~~a~~~~~~m~ 340 (482)
+...|+.++|...|+.+.
T Consensus 356 ~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 666788888888777663
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.84 E-value=2.4 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 384 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=85.41 E-value=26 Score=35.78 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=44.5
Q ss_pred HHHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhhhhcCCCC------------CCCHhhHHHHHHHHhhCCCcHHHHH
Q 038748 55 EDVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQLND------------KHSPYAWNLVVDLLGKNCLFDAMWD 122 (482)
Q Consensus 55 ~~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~ 122 (482)
...+...++.++...+..+.+.+.|+...|+.+++......+. ..|......++..+. .++...++.
T Consensus 188 ~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~ 266 (830)
T PRK07003 188 ERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILA 266 (830)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 3444456778888888888888888888888887654431111 122223333333332 355666666
Q ss_pred HHHHHHhcCC
Q 038748 123 AIKSMKKENV 132 (482)
Q Consensus 123 ~~~~~~~~~~ 132 (482)
+++++...|.
T Consensus 267 ~~~~l~~~g~ 276 (830)
T PRK07003 267 VADEMALRSL 276 (830)
T ss_pred HHHHHHHhCC
Confidence 6666665554
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=85.38 E-value=16 Score=28.52 Aligned_cols=80 Identities=8% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----ccChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNEN-----VLNHENCRAAVRVYMDSDD-PYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
+++++.-....+++.....+++.+..... ..+...|.+++.+.++... ---+..+|+-|.+.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666666555522110 1233445555555544443 33344555555555555555555555
Q ss_pred HHHHHh
Q 038748 425 VAGLCD 430 (482)
Q Consensus 425 i~~~~~ 430 (482)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.36 E-value=3.5 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|..+..+|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.11 E-value=0.97 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=11.2
Q ss_pred CCCChhhHHHHHHHHHccCCChHHH
Q 038748 237 DPDNVPAYDSYLITLLKGCDGIYET 261 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~~~~~~~a 261 (482)
.|++..+|+.+...+... |++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~-g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQ-GDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHC-cCHHhh
Confidence 444444444444444444 444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.05 E-value=13 Score=36.12 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=21.6
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|...
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555544444332 3344555555555555555555554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=2.8 Score=37.30 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFP-DIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
.|.+.|.+++|+..|..-... .| +.+++..-..+|.+...+..|+.=....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 366667777777766655542 34 5566666666666666665554443333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.3 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 454 FALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+++.+..+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788899999999999999999998753
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.89 E-value=47 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+|--|.++|++++|.++..............+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 445556666666666666555544445555555555655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.42 E-value=34 Score=31.54 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP---DTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
...++..+...+.+.|.++.|...+..+. ..+... ...+.-.-++.+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~-~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLF-QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHh-ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777888888888888877774 322111 233334445566677777888877777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.39 E-value=18 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=24.6
Q ss_pred hcCChHhHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 182 RDGKTIDAWQFLRVVDGR--IKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
..++++++..+++.|.-- -.+...++.. -.+...|+|++|.++|+++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhc
Confidence 355666666666555431 1122223332 234556666666666666653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.00 E-value=6.5 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+.++.+....+.|++......+.+|-+-+|+..|..+|+-++....+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34445555566667777777777777777777777777777777655444444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.87 E-value=49 Score=32.96 Aligned_cols=151 Identities=15% Similarity=0.037 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 256 DGIYETVNSLKRMME-------RGCNPGMTFFKLAFEECLTGQ-----NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
.+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++.... +.| .|+....-..+...
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHc
Confidence 567777777776655 34 2223444555555432 5566777777764 444 34444333332222
Q ss_pred Hh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChH
Q 038748 324 CY-SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV--KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 324 ~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 400 (482)
.. ..+...|.++|...-+.|.. +...+..++.... ...+.+.|..++++..+.| .|....-...+..+.. +.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 22 24567788888877777643 2222222221111 2336777888888877776 3332222233334444 6666
Q ss_pred HHHHHHHHHHHcCC
Q 038748 401 VAIKFWKYMIENHC 414 (482)
Q Consensus 401 ~a~~~~~~m~~~~~ 414 (482)
.+.-.+..+.+.|.
T Consensus 415 ~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 415 TALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666655543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.61 E-value=3.5 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 038748 456 LSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 456 ~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
+..+..++.+.|++++|++.+++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=25 Score=28.95 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHH--
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI--LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCR-- 387 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 387 (482)
-...|..++.... .+.. +.....+++......-....+.. +...+...|++++|..-++...... ....+.
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l 127 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHH
Confidence 3456666666654 3333 55555666666422211122222 2345677888999988888776532 222222
Q ss_pred ---HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 388 ---AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 388 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|.+.....|.+++|++.++...+.++.+ .....-.+.+...|+-++|..-|++..+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34556677888899988888776654321 223334467888889999999998888776
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.97 E-value=4.3 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=21.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChhHHHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLS--ETGNLLVAGLCDMHMLPEAVKY 440 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 440 (482)
...+.++|+..|....+.-..+.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443221111 3444555555555555555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.85 E-value=3.4 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.+..++.+.|++++|.+.|+++..+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455566666777777776666644
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.64 E-value=38 Score=30.84 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=21.2
Q ss_pred HHhhhcCCCCCHHHHHHHHHhhcCCchhHhHHhh
Q 038748 56 DVLDKTLIRVSQETVEQVLKFSYSHPGPAVKFFR 89 (482)
Q Consensus 56 ~~l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 89 (482)
....+.|+.+++..+..++..+.|+...|+..++
T Consensus 169 ~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 169 KVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3344456666666666666666666666666665
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.37 E-value=34 Score=30.13 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHH
Q 038748 118 DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDV 160 (482)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 160 (482)
.+|.++|..+.++.-... +-..++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk~v-~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGKEV-TSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCCcc-cHhHHHHHHccccchhhHHHHHHH
Confidence 567888887776642111 134456666666666666665543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=30 Score=34.75 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCchHHHHHHHhhCCCCc--cHHHH----hhhcCCCCCHHHHHHHHHhhcCCchhHhHHhhh
Q 038748 35 LPPTIKTLCEIIANTPSP--TVEDV----LDKTLIRVSQETVEQVLKFSYSHPGPAVKFFRW 90 (482)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~--~~~~~----l~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 90 (482)
..+.+.+-|..+.-.+.. ++... +.+.|+..+...+..+.+.+.|++..|+.+++.
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555555555543332 23332 334566677666666666777777777777664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.9 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=16.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHhh
Q 038748 458 KLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 458 ~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+..++.+.|++++|.+.++++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 455566677777777777776653
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.26 E-value=4.1 Score=24.12 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=11.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~ 446 (482)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.23 E-value=9.1 Score=26.01 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=37.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhccHHHHHHHH
Q 038748 430 DMHMLPEAVKYAKGMAEKGIQVTP--FALSKLKQILIKARKEAVYEELL 476 (482)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 476 (482)
...+.++|+..|....+.-..+.. .++..++.+++.-|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999998776544333 57888999999999999887753
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.44 E-value=19 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.6
Q ss_pred hhHhHHhhhhh
Q 038748 82 GPAVKFFRWSA 92 (482)
Q Consensus 82 ~~a~~~~~~~~ 92 (482)
++|..+-+|+.
T Consensus 22 qEA~tIAdwL~ 32 (115)
T TIGR02508 22 QEANTIADWLH 32 (115)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 76/357 (21%)
Query: 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197
F F V D K ++ ++ K V L + + + +F V+
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKF---VE 84
Query: 198 GRIKPDNDTYAILLEGWEKE-RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
++ + Y L+ + E R + + + E + + ++ + Y ++
Sbjct: 85 EVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQR-DRLY--NDNQVFAKYNVS------ 132
Query: 257 GIYETVNSLKRMMERGCNP-------GMT-FFK--LAFEECLTGQNLRGAEF--IWGAMV 304
+ L++ + P G+ K +A + CL+ + +F W +
Sbjct: 133 -RLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNL 189
Query: 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL 364
P+T + M+ L + + D + + L R+L
Sbjct: 190 KNC-NSPETVL-EMLQKLLYQIDPNWTS--RSDHS-----SNIKLRIHSIQAEL---RRL 237
Query: 365 WEASGLFNEM-----VKNENVLNHEN--CRAAV--RVYMDSD--DPYVAIKFWKYMIENH 413
++ N + V+N N N C+ + R D A +++H
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHH 294
Query: 414 CSDLS--ETGNLLVAGL-CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467
L+ E +LL+ L C LP V P LS +I
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVL----------TTNPRRLS-----IIAES 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 9e-08
Identities = 70/489 (14%), Positives = 143/489 (29%), Gaps = 153/489 (31%)
Query: 39 IKTLCEIIANTPSPTVEDVLDKTL-IRVSQETVEQVLKFSYSHPGPAVKFFRWSAYQ--- 94
++ L I P D + I++ +++ L+ + + Y+
Sbjct: 202 LQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELR----------RLLKSKPYENCL 247
Query: 95 --LNDKHSPYAWNL---------------VVDLLGKNCLFD-AMWDAIKSMKKENVLSLA 136
L + + AWN V D L ++ ++ + V SL
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306
Query: 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196
D+ + + L S+++ RDG + W +
Sbjct: 307 -LLKYLD-----------CRPQDLPRE-VLTTNPRRL-SIIAESIRDG--LATWDNWK-- 348
Query: 197 DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256
+ D ++E + A +K F + + P + L + D
Sbjct: 349 ----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----PPSAHIPTILLSLIW--FD 398
Query: 257 GIYETV----NSL--KRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF 309
I V N L ++E+ ++ + E + +N
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN----------------- 441
Query: 310 RPDTHMYNMMISLY----CYSNETGAAMKLLDEMVYN---------------GAFPDIQT 350
H ++ Y + ++ L D+ Y+ F +
Sbjct: 442 EYALH--RSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTLFRMV-- 496
Query: 351 YNIL-FEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409
+ L F FL +K+ S +N N L ++ Y Y+
Sbjct: 497 F--LDFRFL--EQKIRHDSTAWNASGSILNTLQQ------LKFYK------------PYI 534
Query: 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKE 469
+N LV + + LP+ E+ + + + + L +I + A E
Sbjct: 535 CDND-----PKYERLVNAI--LDFLPKI--------EENLICSKY--TDLLRIALMAEDE 577
Query: 470 AVYEELLKK 478
A++EE K+
Sbjct: 578 AIFEEAHKQ 586
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 7e-07
Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 4/212 (1%)
Query: 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI--GFRPDTHMYNMMISLYC 324
+ + + F+ CL L A + G+ MYN ++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 325 YSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE 384
+ +L + G PD+ +Y + + + + E + E +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 385 NCRAAVRVYMDSDDPYVAIKFWK--YMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAK 442
A + D A+ K + + T LL + +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 443 GMAEKGIQVTPFALSKLKQILIKARKEAVYEE 474
+ + + ++ + + ++
Sbjct: 297 LKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 4e-05
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFAL---NSLLSAICRDGKTIDAW 190
+ F ++ D++ A V K + L N+++ R G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 191 Q-FLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241
V D + PD +YA L+ ++ A + E + + G +
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.37 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.24 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.68 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.2 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.02 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.84 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.8 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.76 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.74 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.32 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.92 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.43 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.2 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.3 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.89 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.2 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.9 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.54 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.88 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.72 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.88 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.61 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.34 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.17 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.58 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 82.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.46 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.01 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.39 | |
| 2jul_A | 256 | Calsenilin; EF-hand, calcium, LXXLL, DNA binding p | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=293.54 Aligned_cols=402 Identities=10% Similarity=-0.025 Sum_probs=312.3
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC-----------
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN----------- 131 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----------- 131 (482)
|+...+..+.. ...|+++.|..+|+.+.. ..+++.+++.++..|.+.|++++|.++|+++....
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 44444444443 235566666666665432 23556666666666666666666666666422221
Q ss_pred -----CCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH-------------------------------
Q 038748 132 -----VLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS------------------------------- 175 (482)
Q Consensus 132 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------- 175 (482)
..+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 123556666666666666666666666666654321 2222222
Q ss_pred -------HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 176 -------LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 176 -------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
++..|.+.|++++|.++|+++... +++..+|+.++.+|.+.|++++|..+|+++... .|++..++..++
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~ 346 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI---DPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc---CcccHHHHHHHH
Confidence 233444556666666666665443 578999999999999999999999999999854 566788999999
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
..+... |++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+
T Consensus 347 ~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 347 ASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 999999 99999999999998653 5578899999999999999999999999997321 3468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 408 (482)
+++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|++
T Consensus 423 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999998743 47889999999999999999999999999886543 788999999999999999999999999
Q ss_pred HHHc----CCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 409 MIEN----HCSDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 409 m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9875 66787 6799999999999999999999999998876 34789999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=293.87 Aligned_cols=402 Identities=8% Similarity=-0.086 Sum_probs=345.0
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 142 (482)
++...+..++. ...|++++|..+|+.+.. ..|+..++..++..|.+.|++++|..+|+.+... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 34556667776 457999999999998874 3468899999999999999999999999998654 46788999999
Q ss_pred HHHHhhCChhhHHHHHHHHHhc---------------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHH
Q 038748 143 SSYVVADRVKDAITTFDVMEQY---------------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTY 207 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 207 (482)
.+|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|++++|.++|+++....+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853221 2334688999999999999999999999999865334344443
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHH
Q 038748 208 AIL--------------------------------------LEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI 249 (482)
Q Consensus 208 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~ 249 (482)
..+ +..|.+.|++++|.++|+++... |++..+++.++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~ 313 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHH
Confidence 333 55677889999999999998742 457889999999
Q ss_pred HHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCH
Q 038748 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (482)
.+.+. |++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+. .+.+..+|+.++.+|.+.|++
T Consensus 314 ~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 314 TLFVR-SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHh-cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccH
Confidence 99999 99999999999999865 347788999999999999999999999999732 255788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 038748 330 GAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYM 409 (482)
Q Consensus 330 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 409 (482)
++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+.+
T Consensus 390 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988532 3678999999999999999999999999998754 37889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQVT--PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9864 346789999999999999999999999999876 66787 78999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=264.66 Aligned_cols=206 Identities=12% Similarity=0.104 Sum_probs=152.8
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC---------HH
Q 038748 261 TVNSLKRMMERGCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE---------TG 330 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~ 330 (482)
+..+.+++.+.+.... ...++.+|++|++.|++++|.++|++|. +.|+.||..+||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444455555554433 3356677777777777777777777774 66777777777777777776544 57
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 331 AAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 331 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|...+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888888888888888888888887776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=258.05 Aligned_cols=186 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHhhcccCCCCCH
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN---------LRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 313 (482)
.++.+|..+++. |++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|. ..|+.||.
T Consensus 28 ~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~-~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI-VDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH-HTTCCCCH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH-HhCCCCCH
Confidence 455566666666 6666666666666666666666666666666665443 456667777773 66677777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
.+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 394 MDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 394 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-27 Score=223.98 Aligned_cols=378 Identities=11% Similarity=0.012 Sum_probs=324.9
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|.+.|..+.. ..+.+...+..+...+...|++++|...++......+.+..+|..+..++.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 457999999999998776 345567788888889999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
+.|+++.+... .+..+|..+..++...|++++|.+.|+.+....+.+...+..+...+...|++++|...|+++...
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 164 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-- 164 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 99999988642 356679999999999999999999999976555667778889999999999999999999999854
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
.|++..+|..+...+... |++++|++.|+++.+.. +.+...+..+...+...|++++|...+.+.++.. +.+..+
T Consensus 165 -~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 239 (388)
T 1w3b_A 165 -QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVV 239 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHH
T ss_pred -CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHH
Confidence 787888999999999999 99999999999999864 3357788899999999999999999999987331 335788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+...|...|++++|+..|+++.+.+.. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999999986432 56789999999999999999999999998864 3477889999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKAR 467 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 467 (482)
.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++.+... .+...|..+...+.+.|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 999999999999998753 34457899999999999999999999999987542 24566766666665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=222.84 Aligned_cols=362 Identities=10% Similarity=-0.076 Sum_probs=318.9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...+.+.|++++|.+.++.+.+..+.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 4566788999999999999999988888889999999999999999999999988864 357889999999999999999
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
+|.+.|+++....+.+..+|..+..++.+.|++++|...|+++... .|++...+..+...+... |++++|.+.|++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 160 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKAL-GRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-cCHHHHHHHHHH
Confidence 9999999976655667788999999999999999999999999754 788888888888888888 999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 038748 268 MMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD 347 (482)
Q Consensus 268 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 347 (482)
+.+.. +-+..++..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++..+... -+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 98864 3357889999999999999999999999997332 33577889999999999999999999999887532 25
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 427 (482)
..++..+...+...|++++|...|+++.+.+.. +..+|..+..++.+.|++++|.+.|+++.+.. +.+..+|+.+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 778899999999999999999999999987543 56789999999999999999999999999864 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+...|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999998764 34678899999999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-23 Score=198.19 Aligned_cols=362 Identities=9% Similarity=-0.027 Sum_probs=283.7
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+.+...|..+...+.+.|++++|+.+|+++.+..+.+..+|..+..++...|++++|...|+.+.+.+. .+..++..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 34556788999999999999999999999999988888889999999999999999999999999988753 36788889
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHhHHhcCCCCCC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDN---DTYAILL------------EGWEKERDVANAKKTFGEMVIEVGWDPDN 240 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 240 (482)
+..+|...|++++|.+.|+.+....+.+. ..+..+. ..+.+.|++++|...|+++... .|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 99999999999999999999876545555 6666554 4488999999999999999753 6777
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-CHHHHHHH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMM 319 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 319 (482)
..++..+...+... |++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .| +...+..+
T Consensus 177 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~ 251 (450)
T 2y4t_A 177 AELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHY 251 (450)
T ss_dssp HHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHH
Confidence 88899999999999 99999999999988753 346788999999999999999999999998732 34 34444444
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 320 ------------ISLYCYSNETGAAMKLLDEMVYNGAFPD-----IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 320 ------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+... .+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cc
Confidence 78889999999999999999884 344 34678888999999999999999999887542 26
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHH------------HHhcC-----ChhHHHHHHHHH
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-ETGNLLVAG------------LCDMH-----MLPEAVKYAKGM 444 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~------------~~~~g-----~~~~A~~~~~~m 444 (482)
...|..+..+|...|++++|.+.++.+.+. .|+. ..+..+..+ |...| +.+++.+.++++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 788999999999999999999999999874 4543 455555422 33334 567778888864
Q ss_pred -HHcCC--CCCH-------HHHHHHHHHHHHhccHHH
Q 038748 445 -AEKGI--QVTP-------FALSKLKQILIKARKEAV 471 (482)
Q Consensus 445 -~~~~~--~~~~-------~~~~~l~~~~~~~g~~~~ 471 (482)
.+... .++. ..+..+..+|...|+.++
T Consensus 407 ~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33221 1222 256666666666666543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-23 Score=200.65 Aligned_cols=393 Identities=11% Similarity=0.002 Sum_probs=284.1
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|+.+... . |+..+|..+..++...|++++|...|+++.+.++.+..+|..+..++...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~al~~-~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALEL-K--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc-C--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4579999999999988873 2 689999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHH-----------------------------------HhhC--
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLR-----------------------------------VVDG-- 198 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-----------------------------------~~~~-- 198 (482)
..|+.+.+.+. ++......++..+........+.+.+. .+..
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 99999998763 344444444444333222222211111 0000
Q ss_pred -C-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhHHh----cCCC-------CCChhhHHHHHHHHHccCC
Q 038748 199 -R-------IKPDNDTYAILLEGWEK---ERDVANAKKTFGEMVIE----VGWD-------PDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 199 -~-------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~----~~~~-------p~~~~~~~~l~~~~~~~~~ 256 (482)
. .+.+...+......+.. .|++++|...|+++... .... |.+..++..+...+... |
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-N 251 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC-C
Confidence 0 01124444444444443 78888888888887751 0112 33455677777778888 8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
++++|...++++.+... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|
T Consensus 252 ~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888877643 37777778888888888888888888876221 335667788888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-
Q 038748 337 DEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS- 415 (482)
Q Consensus 337 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 415 (482)
++..+.... +...+..+...+...|++++|..+++.+.+.... +...+..+...|...|++++|.+.++.+.+....
T Consensus 328 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 888776432 4567777778888888888888888888765332 4567777888888888888888888887753211
Q ss_pred CC----hhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 416 DL----SETGNLLVAGLCD---MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 416 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11 2377778888888 888888888888887764 2356777788888888888888888887765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-22 Score=190.69 Aligned_cols=330 Identities=12% Similarity=0.076 Sum_probs=267.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.+...+.+.....+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+.+..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44455556666666778899999999999999999999999998864 34788999999999999999999999999776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh---hhHHHHH------------HHHHccCCChHHHHH
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV---PAYDSYL------------ITLLKGCDGIYETVN 263 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~~l~------------~~~~~~~~~~~~a~~ 263 (482)
..+.+..++..+..+|.+.|++++|...|+++. ...|++. ..+..+. ..+... |++++|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~ 164 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL---KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIA 164 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 556788999999999999999999999999997 4577666 6666553 347788 99999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
.|+++.+.. +.+...+..+..++.+.|++++|.++|..+.+.. +.+..+|..+...|...|++++|+..|+++.+.
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 240 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 240 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998864 4467889999999999999999999999997432 456889999999999999999999999999875
Q ss_pred CCCC-HhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCccC-----hhhHHHHHHHHhcCCChHHHHHH
Q 038748 344 AFPD-IQTYNIL------------FEFLVKGRKLWEASGLFNEMVKNENVLN-----HENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 344 ~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
.|+ ...+..+ ...+...|++++|..+|+.+.+.. |+ ...+..+..++.+.|++++|.+.
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344 3334433 788999999999999999998853 33 34788889999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 406 WKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
++.+.+.. +.+...|..+..+|...|++++|...|+++.+... -+...+..+..+
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 99998753 34568999999999999999999999999987542 245566555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-22 Score=195.09 Aligned_cols=372 Identities=9% Similarity=-0.073 Sum_probs=290.5
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVF 142 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 142 (482)
|++..+..+.. ...|+++.|...|+.+.. ..+.+..+|..+..++...|++++|...|+++...++.+......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALE--LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc--cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 56666655555 457999999999998877 44567889999999999999999999999999998876666566666
Q ss_pred HHHHhhCChhhHHHHHHHHHhc-----------------------------------CC---------CCCHhhHHHHHH
Q 038748 143 SSYVVADRVKDAITTFDVMEQY-----------------------------------GC---------KHDVFALNSLLS 178 (482)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---------~~~~~~~~~ll~ 178 (482)
..+........+.+.+..+... .. ..+...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 5555443333333333211110 00 011334444444
Q ss_pred HHHh---cCChHhHHHHHHHhhC-----C--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh
Q 038748 179 AICR---DGKTIDAWQFLRVVDG-----R--I-------KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV 241 (482)
Q Consensus 179 ~~~~---~g~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 241 (482)
.+.. .|++++|..+|+++.. . . +.+..++..+...+...|++++|...|+++... .|+ .
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~-~ 270 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPR-V 270 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCC-H
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---Ccc-H
Confidence 4444 8999999999998644 1 1 334678889999999999999999999999854 565 7
Q ss_pred hhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 038748 242 PAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 321 (482)
.++..+...+... |++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 271 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 346 (514)
T 2gw1_A 271 NSYIYMALIMADR-NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHHHTS-SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHH
Confidence 8889999999999 99999999999998764 3456788899999999999999999999997332 335778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHhc-
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-LN----HENCRAAVRVYMD- 395 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~- 395 (482)
.|...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.... ++ ...+..+..+|..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988532 25678888999999999999999999998874322 11 3378899999999
Q ss_pred --CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 396 --SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 396 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+..
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999998864 3355788889999999999999999999998876
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-21 Score=187.76 Aligned_cols=388 Identities=13% Similarity=0.049 Sum_probs=276.6
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|+..|+.+.. ..+.++.+|..+..++.+.|++++|++.|+++.+.++.+..++..+..++...|++++|.
T Consensus 36 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 457999999999998887 455678999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-------CCCCHHH----------------------
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR-------IKPDNDT---------------------- 206 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~---------------------- 206 (482)
..|+.+ .. .|+. .+..+..+...+....|...++.+... ..|+...
T Consensus 114 ~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 999643 32 2222 222333444555556677766665321 1122221
Q ss_pred --------HHHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCCChh-------hHHHHHHHHHccCCChHHHHH
Q 038748 207 --------YAILLEGWEK--------ERDVANAKKTFGEMVIEVGWDPDNVP-------AYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 207 --------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~a~~ 263 (482)
...+...+.. .|++++|..+|+++. ...|++.. ++..+...+... |++++|.+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~ 264 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL---SANTVDDPLRENAALALCYTGIFHFLK-NNLLDAQV 264 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH---C--CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHCCCcchhhHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 1222222211 247788888888886 34665433 355555666777 88889988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG 343 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 343 (482)
.+++..+.. |+...+..+...+...|++++|...+..+.+.. +.+..+|..+...|...|++++|...|++..+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 888888754 557777888888888888999988888886332 3457778888888888889999998888888753
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC-----CCCh
Q 038748 344 AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC-----SDLS 418 (482)
Q Consensus 344 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~ 418 (482)
.. +...+..+...+...|++++|..+++++.+.... +...+..+...|...|++++|.+.|+.+.+... ....
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 22 4567778888888888999999888888876433 556778888888888999999888888775321 0111
Q ss_pred hhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 419 ETGNLLVAGLCDM----------HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 419 ~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+..+...+... |++++|...|+++.+... .+...+..+..++.+.|++++|.+.+++..+
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233445566666 888889998888877652 4567788888888888999888888887653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-20 Score=178.74 Aligned_cols=358 Identities=10% Similarity=-0.029 Sum_probs=270.7
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|++.|+.+.. ..+.+..+|..+...+...|++++|...|+.+ ...+.. ....+..+...+....|.
T Consensus 70 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 70 ISTGDLEKVIEFTTKALE--IKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDF---DGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCC---ChHHHHHHHHHHHHHHHH
Confidence 557999999999998877 44567899999999999999999999999744 332211 122344556666678888
Q ss_pred HHHHHHHhc------CCCCCHhh------------------------------HHHHHHHHHh--------cCChHhHHH
Q 038748 156 TTFDVMEQY------GCKHDVFA------------------------------LNSLLSAICR--------DGKTIDAWQ 191 (482)
Q Consensus 156 ~~~~~~~~~------~~~~~~~~------------------------------~~~ll~~~~~--------~g~~~~a~~ 191 (482)
..++.+... ...|+... ...+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 888888553 11122211 1222222211 247889999
Q ss_pred HHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHH
Q 038748 192 FLRVVDGRIKPDND-------TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 192 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
+|+.+....+.+.. ++..+...+...|++++|...|++.... .|+ ..++..+...+... |++++|++.
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~-~~~~~A~~~ 298 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADK-ENSQEFFKF 298 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCS-SCCHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHh-cCHHHHHHH
Confidence 99997765555543 5677778888999999999999999854 675 77888888888888 999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
++++.+.. +.+..++..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...++++.+...
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998864 3467789999999999999999999999997332 33567889999999999999999999999988632
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----cChhhHHHHHHHHhcC----------CChHHHHHHHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV-----LNHENCRAAVRVYMDS----------DDPYVAIKFWKYM 409 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m 409 (482)
.+...+..+...+...|++++|...|+++.+.... .....+.....++... |++++|.+.|+.+
T Consensus 376 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 376 -TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 35678888999999999999999999998775321 1112234445667777 9999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038748 410 IENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.. +.+...+..+...|...|++++|.+.|++..+...
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9864 24557889999999999999999999999987753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-19 Score=164.98 Aligned_cols=335 Identities=11% Similarity=0.039 Sum_probs=205.9
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
|+..+..+...+...|++++|+..|+++.+..+.+..++..+..++...|++++|...|+.+.+... .+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3456677777777888888888888888777777777777788888888888888888887776542 255667777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIK---PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+...|++++|...|+......+ .+...+..+...+. ...+..+...+... |
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~-~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFDG-A 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHT-T
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHc-c
Confidence 7777777777777777654333 34444443311000 00111113334444 5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLL 336 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 336 (482)
++++|++.++++.+.. +.+...+..+...+...|++++|...++.+++. .+.+..++..+...|...|++++|...|
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554432 223444555555555555555555555555421 1234455555555555556666666665
Q ss_pred HHHHHCCCCCCHhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHhcCCChH
Q 038748 337 DEMVYNGAFPDIQTY------------NILFEFLVKGRKLWEASGLFNEMVKNENVLNH----ENCRAAVRVYMDSDDPY 400 (482)
Q Consensus 337 ~~m~~~g~~p~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 400 (482)
++..+.... +...+ ..+...+...|++++|...++++.+.... +. ..+..+..+|...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 555543211 11111 12355677888888888888888775432 22 22445677888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+|.+.++...+.. +.+..+|..+...|...|++++|...|+++.+... -+...+..+..+....++
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHH
Confidence 8888888888753 23557788888888888888888888888886652 245566666666555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-19 Score=162.56 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+.+.+... .+..++..+..++...|++++|...|+.+....+.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34566677777777777777777777776542 35666777777777777777777777775544445667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC---CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDP---DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ 291 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 291 (482)
...|++++|...|++.. ...| ++...+..+..... ...+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVL---KSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHH---hcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHcc
Confidence 77777777777777775 3344 33322222211110 112334467888999
Q ss_pred ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 038748 292 NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLF 371 (482)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 371 (482)
++++|.++++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 135 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999997332 4567889999999999999999999999999864 336788899999999999999999999
Q ss_pred HHHHhCCCccChhhHH------------HHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCh
Q 038748 372 NEMVKNENVLNHENCR------------AAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-----ETGNLLVAGLCDMHML 434 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~ 434 (482)
+...+.... +...+. .+...+.+.|++++|.+.++.+.+.. |+. ..+..+...+...|++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCH
Confidence 999875432 223222 23667899999999999999999854 332 2345577889999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 435 PEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 435 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++..+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998875 34778999999999999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-18 Score=158.53 Aligned_cols=290 Identities=7% Similarity=-0.052 Sum_probs=186.0
Q ss_pred CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 038748 96 NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNS 175 (482)
Q Consensus 96 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 175 (482)
..+.+...+..+...+...|++++|.++|+++.+..+.+...+..++.++...|++++|..+++.+.+... .+...+..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34456667777777888888888888888888877776666777777788888888888888888877542 35666777
Q ss_pred HHHHHHhcC-ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 176 LLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 176 ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
+...+...| ++++|.+.|+......+.+...|..+..++...|++++|...|++.... .|++...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 777777777 7788888777766555556677777777777788888888777777643 454555666666666666
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-------CCCCHHHHHHHHHHHHhcC
Q 038748 255 CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-------FRPDTHMYNMMISLYCYSN 327 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~ 327 (482)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+... .+....++..+...|...|
T Consensus 173 -~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 -NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp -TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 77777777777766543 23455666666666666666666666666542210 0222445555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
++++|...|++..+... .+...+..+...+...|++++|...|++..+.... +...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 66666666666555421 13445555555555566666666666555543221 334444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-18 Score=158.42 Aligned_cols=285 Identities=9% Similarity=-0.044 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|.++|+.+.+... .+...+..++.++...|++++|..+++.+....+.+..++..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 334455555555555555555555555554432 2333444445555555555555555555443333444555555555
Q ss_pred HHhcC-CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038748 214 WEKER-DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN 292 (482)
Q Consensus 214 ~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 292 (482)
+...| ++++|...|++.. ...|++..++..+...+... |++++|++.+++..+.. +.+...+..+...+...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKAT---TLEKTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHH---TTCTTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhhhhHHHHHHHHHHHH---HhCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 55555 5555555555554 23444444555555555555 55555555555544432 1122333334444444444
Q ss_pred hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038748 293 LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFN 372 (482)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 372 (482)
+ ++|...+++..+... .+...+..+...+...|++++|...++
T Consensus 175 ~------------------------------------~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 175 S------------------------------------KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp H------------------------------------HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H------------------------------------HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4 444444444444321 133444444445555555555555555
Q ss_pred HHHhCC--------CccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038748 373 EMVKNE--------NVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 373 ~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (482)
++.+.. ...+..++..+..+|...|++++|.+.++...+.. +.+...|..+...|...|++++|.+.|++.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444321 01223455555555666666666666666555432 123345555556666666666666666655
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 038748 445 AEKGIQVTPFALSKLKQIL 463 (482)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~ 463 (482)
.+.. +.+...+..+..++
T Consensus 297 l~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 297 LGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp TTTC-SCCHHHHHHHHHHH
T ss_pred HccC-CCchHHHHHHHHHH
Confidence 5433 12344555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-19 Score=165.63 Aligned_cols=265 Identities=10% Similarity=-0.029 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~ 250 (482)
..+..+...+...|++++|...|+.+....+.+..++..+..+|...|++++|...|+++... .|++..++..+...
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 334455555555555555555555544333445555555555555555555555555555432 34445555555555
Q ss_pred HHccCCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 251 LLKGCDGIYETVNSLKRMMERGCNPGMTFFKL---------------AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
+... |++++|++.++++...... +...+.. .+..+...|++++|...+..+++.....++..+
T Consensus 142 ~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 142 FTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 5555 5555555555555543211 1111100 122222455555555555555422111113445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+... .+...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 5555555555555555555555555431 11334455555555555555555555555544321 133445555555555
Q ss_pred CCChHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChhHHHHHHH
Q 038748 396 SDDPYVAIKFWKYMIENHCSD----------LSETGNLLVAGLCDMHMLPEAVKYAK 442 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (482)
.|++++|.+.|+.+.+..... ...+|..+..+|...|++++|..+++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 555555555555544321000 12445555555555555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-15 Score=143.52 Aligned_cols=340 Identities=11% Similarity=-0.026 Sum_probs=242.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hC
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV----AD 149 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 149 (482)
.++.+.|+..|...... .++..+..+...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCC
Confidence 56778888888876653 356777777777777 778888888888877765 45566667777776 67
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 038748 150 RVKDAITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK----ERDVA 221 (482)
Q Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 221 (482)
++++|...|+...+.| +...+..|...|.. .++.++|.++|+..... .+...+..+...|.. .++++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 8888888888877754 45666777777776 67788888888774331 367777777777777 78888
Q ss_pred HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCh
Q 038748 222 NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNL 293 (482)
Q Consensus 222 ~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 293 (482)
+|..+|++.... + +..++..+...+.. . +++++|.++|++..+.| +...+..+...+.. .++.
T Consensus 205 ~A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 205 ISAQWYRKSATS-G----DELGQLHLADMYYFGIGVT-QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp HHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 888888877642 2 34566666666665 4 77888888888877654 34555666666666 7788
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS-----NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR---KLW 365 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~ 365 (482)
++|.+.|+... +.+ +...+..+...|... +++++|+..|++..+.| +...+..+...|...| +.+
T Consensus 276 ~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 276 LKALEWYRKSA-EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHH-TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHH-HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 88888888875 332 455666677777766 78888888888877764 3455666666666655 677
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHH
Q 038748 366 EASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEA 437 (482)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 437 (482)
+|.++|++..+.+ +...+..+...|.. .+++++|.+.|+...+.| +...+..|...|.. .+++++|
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 8888888887763 45667777777777 678888888888877765 34566677777776 6788888
Q ss_pred HHHHHHHHHcCCC
Q 038748 438 VKYAKGMAEKGIQ 450 (482)
Q Consensus 438 ~~~~~~m~~~~~~ 450 (482)
..+|++..+.+..
T Consensus 423 ~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 423 WAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCC
Confidence 8888888777643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-18 Score=156.80 Aligned_cols=303 Identities=10% Similarity=-0.107 Sum_probs=166.0
Q ss_pred CCchhHhH-HhhhhhcCCCCCC--CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 79 SHPGPAVK-FFRWSAYQLNDKH--SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 79 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
++++.|+. .|+.........| +...+..+...+...|++++|...|+++.+..+.+..++..+..++...|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 5553332111111 34455666666666666666666666666665556666666666666666666666
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
..|+.+.+... .+..++..+..++...|++++|...++.+....+.+...+..+... .. .
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~------------~ 178 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG------------G 178 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh------------h
Confidence 66666665432 2455555566666666666666666655433222222222111000 00 0
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
..+. ..+. .+..+... |++++|+..|+++.+..... +..++..+...+...|++++|...++.+++.. +.+..
T Consensus 179 ~~~~--~~~~-~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 252 (368)
T 1fch_A 179 AGLG--PSKR-ILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL 252 (368)
T ss_dssp ---------C-TTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hccc--HHHH-HHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH
Confidence 0000 0000 12223344 67777777777766643211 35666667777777777777777777765221 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc----------Chh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL----------NHE 384 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 384 (482)
++..+...|...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...|+++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 67777777777777777777777776642 2245666777777777777777777777766532111 146
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKY 408 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~ 408 (482)
+|..+..+|...|++++|..+++.
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 677777777777777777777654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-16 Score=149.98 Aligned_cols=406 Identities=10% Similarity=0.043 Sum_probs=291.9
Q ss_pred CHHHHHHHHH-hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038748 66 SQETVEQVLK-FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS 144 (482)
Q Consensus 66 ~~~~~~~ll~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 144 (482)
+......++. ...|+.+.|..+|+.+.. ..+.+...|..++..+.+.|++++|..+|+++.... |+...|...+..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHH
Confidence 4445555555 346899999999999887 567788899999999999999999999999999886 477778777754
Q ss_pred H-HhhCChhhHHH----HHHHHHhc-CCCC-CHhhHHHHHHHHHh---------cCChHhHHHHHHHhhCCCCCC--HHH
Q 038748 145 Y-VVADRVKDAIT----TFDVMEQY-GCKH-DVFALNSLLSAICR---------DGKTIDAWQFLRVVDGRIKPD--NDT 206 (482)
Q Consensus 145 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~--~~~ 206 (482)
. ...|+++.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+.... .+.+ ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHH
Confidence 3 34588887766 77776553 5444 46678777776654 6889999999999765 2222 234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHhHH---hcC-----CCCCC-------hhhHHHHHHHHHccC---
Q 038748 207 YAILLEGW-------------EKERDVANAKKTFGEMVI---EVG-----WDPDN-------VPAYDSYLITLLKGC--- 255 (482)
Q Consensus 207 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~~---~~~-----~~p~~-------~~~~~~l~~~~~~~~--- 255 (482)
|....... .+.++++.|..++..+.. ... +.|.. ...|...+.......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 134567778777765321 011 23321 134444443222210
Q ss_pred CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHhhcccCCCCCHHHHH
Q 038748 256 DGI----YETVNSLKRMMERGCNPGMTFFKLAFEECLT-------GQNLR-------GAEFIWGAMVGRIGFRPDTHMYN 317 (482)
Q Consensus 256 ~~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 317 (482)
++. ..+..+|++.... .+-+...|......+.+ .|+++ +|..+|++.+ ..-.+.+...|.
T Consensus 248 ~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~ 325 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYF 325 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHH
Confidence 222 3677888888775 24467778888877775 79987 8999999987 211234588899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHH-Hh
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDI--QTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRV-YM 394 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 394 (482)
.++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|++..+.... +...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHH
Confidence 9999999999999999999999985 4542 47888888888999999999999999886322 33333332222 33
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHHhccHHH
Q 038748 395 DSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGI-QV--TPFALSKLKQILIKARKEAV 471 (482)
Q Consensus 395 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~g~~~~ 471 (482)
..|++++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .| ....|...+....+.|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 6899999999999998753 23568899999999999999999999999988742 23 24578888888888999999
Q ss_pred HHHHHHHHhh
Q 038748 472 YEELLKKCKA 481 (482)
Q Consensus 472 a~~~~~~m~~ 481 (482)
+..+.+++.+
T Consensus 482 ~~~~~~r~~~ 491 (530)
T 2ooe_A 482 ILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-15 Score=145.85 Aligned_cols=364 Identities=10% Similarity=0.027 Sum_probs=298.7
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhh----CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hCChhh
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGK----NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV----ADRVKD 153 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 153 (482)
..+++.+..... ..++.++..+...|.. .+++++|+..|+...+.+ +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 334555554433 2577888888888888 899999999999998875 56678888899988 899999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK----ERDVANAKK 225 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 225 (482)
|.+.|++..+.| +...+..|...|.. .+++++|..+|+.... .-+...+..+...|.. .+++++|..
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998865 66777888888888 7899999999998543 2367888888888887 889999999
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNLRGAE 297 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 297 (482)
+|++.... .+..++..+...+.. . +++++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 173 ~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 173 WYSKAAEQ-----GNVWSCNQLGYMYSRGLGVE-RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHC-----CCHHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998753 256688888888887 6 99999999999998876 56677778888876 88999999
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHH
Q 038748 298 FIWGAMVGRIGFRPDTHMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG-----RKLWEAS 368 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~ 368 (482)
++|+... +.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|.
T Consensus 244 ~~~~~a~-~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 244 VLFSQSA-EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHH-TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHH-HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 9999986 433 56677777778877 899999999999998764 455677777778777 8999999
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMDSD---DPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYA 441 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 441 (482)
.+|++..+.+ +...+..+...|...| ++++|.+.|+...+.| +...+..+...|.. .+++++|..+|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999875 4456777888887766 7899999999999864 45778888888888 89999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHhh
Q 038748 442 KGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKKCKA 481 (482)
Q Consensus 442 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 481 (482)
++..+.| ++..+..+...|.+ .++.++|.+++++..+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9999876 57788888888888 8999999999988653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=160.37 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKL 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 282 (482)
+...+..+...+.+.|++++|...|+++... .|++..++..+...+... |++++|++.|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3444666666667777777777777766543 455666666666666666 77777777777666643 234566666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhh
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPD-----------THMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PDIQT 350 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 350 (482)
+..++...|++++|...|+++++. .|+ ...+..+...+...|++++|...|+++.+.... ++...
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 667777777777777777766521 121 223344567778888888888888888775322 15677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
+..+...+...|++++|...|+++.+.... +..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 888888888888888888888888775433 56788888888888999999999998888753 2335778888888889
Q ss_pred cCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 431 MHMLPEAVKYAKGMAEKGIQ-----------VTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
.|++++|...|+++.+.... .+..+|..+..++...|+.+.+..+.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999888654311 1356788888899999999888877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-18 Score=156.30 Aligned_cols=265 Identities=11% Similarity=0.020 Sum_probs=160.5
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+..+...+.+.|++++|..+|+.+....+.+..+|..+..+|...|++++|...|+++... .|++..++..+...+.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL---QPNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3334444444444444444444433222334444444444444444444444444444321 3334444444444444
Q ss_pred ccCCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCN---------PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLY 323 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (482)
.. |++++|++.|+++.+.... .....+..+...+...|++++|..+++++++...-..+..++..+...|
T Consensus 145 ~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 44 4444444444444432100 0122334456777788888888888888874432222677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHH
Q 038748 324 CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAI 403 (482)
Q Consensus 324 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 403 (482)
...|++++|+..|++..+... .+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 888999999988888887532 35678888888888899999999999888875432 4677888888899999999999
Q ss_pred HHHHHHHHcCC---C--------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 404 KFWKYMIENHC---S--------DLSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 404 ~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
+.|+++.+... . .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99988875321 0 1357889999999999999888877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=180.15 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhc--ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVG--RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNI 353 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 353 (482)
-..||+++|++||+.|++++|.++|.+|.+ ..|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356777777777777777777777766531 246677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 038748 354 LFEFLVKGRK-LWEASGLFNEMVKNENVLNHENCRAAVRVY 393 (482)
Q Consensus 354 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (482)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 7777777776 356777777777777777777777766544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=151.85 Aligned_cols=289 Identities=12% Similarity=0.147 Sum_probs=133.4
Q ss_pred HHHHHHHhhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 038748 69 TVEQVLKFSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVA 148 (482)
Q Consensus 69 ~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 148 (482)
....+|. ..|+.++|.++++.+. ++.+|..+..++.+.|++++|++.|.+. ++..+|..++.++...
T Consensus 8 a~~~ll~-~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 8 AVQVLIE-HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 3344443 4578999999999762 2359999999999999999999999653 4666899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFG 228 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 228 (482)
|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988777764 4567889999999999999999988775 4777899999999999999999999998
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG 308 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 308 (482)
.+ ..|..++.++.+. |++++|.+.++++ .+..+|..++.+|...|+++.|......+
T Consensus 147 ~a-----------~n~~~LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----- 203 (449)
T 1b89_A 147 NV-----------SNFGRLASTLVHL-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----- 203 (449)
T ss_dssp HT-----------TCHHHHHHHHHTT-TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----
T ss_pred Hh-----------hhHHHHHHHHHHh-ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----
Confidence 66 2789999999999 9999999999988 26899999999999999999996655443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcc-----
Q 038748 309 FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG--RKLWEASGLFNEMVKNENVL----- 381 (482)
Q Consensus 309 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~----- 381 (482)
...+.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- ++..+.++.|.. +.+++|
T Consensus 204 -~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~ 279 (449)
T 1b89_A 204 -VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAA 279 (449)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHH
T ss_pred -HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHH
Confidence 2334445578999999999999999999987653 34566777777667664 344444444432 223333
Q ss_pred -ChhhHHHHHHHHhcCCChHHHHHH
Q 038748 382 -NHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 382 -~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
+...|..+...|...++++.|..+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 567888999999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-17 Score=144.60 Aligned_cols=251 Identities=12% Similarity=0.048 Sum_probs=117.6
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
....|+++.|+..++................+..+|...|+++.|...++. ..+|+..++..+...+...|+.++|.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344566666666555543322111122334445566666666655543322 23445555555566666666666666
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+.++++... +..|++...+..+...+... |++++|++.+++ +.+...+..++..+.+.|++++|.+.|+.+.
T Consensus 86 ~~l~~ll~~-~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 86 AELDREMSR-SVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHS-CCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655532 34455555555555555555 666666655554 2344445555555555555555555555554
Q ss_pred cccCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 038748 305 GRIGFRPDTHMY---NMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL 381 (482)
Q Consensus 305 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 381 (482)
+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+....
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 21 2332111 11112222234455555555554443 1223444444444445555555555555544443221
Q ss_pred ChhhHHHHHHHHhcCCChHH-HHHHHHHHHH
Q 038748 382 NHENCRAAVRVYMDSDDPYV-AIKFWKYMIE 411 (482)
Q Consensus 382 ~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 411 (482)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33344444444444444433 3344444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=176.87 Aligned_cols=136 Identities=9% Similarity=-0.022 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAMKLLDEMVY---NGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRA 388 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 388 (482)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038748 389 AVRVYMDSDDP-YVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT 452 (482)
Q Consensus 389 li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (482)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 99999998874 78889999999999999999999888766553 455555555 3345544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-17 Score=148.97 Aligned_cols=279 Identities=9% Similarity=-0.110 Sum_probs=151.6
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+...+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|.+.|+.+.+... .+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 4455677777788888888888888888887777777788888888888888888888888777542 356667777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH-HH-HHHccCCC
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY-LI-TLLKGCDG 257 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-~~-~~~~~~~~ 257 (482)
+...|++++|.+.++.+....+.+...+..+...+ |+.. ....+ .. .+... |+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~-~~~~~~~~~~~~~~-~~ 153 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------VDID-DLNVQSEDFFFAAP-NE 153 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------CCTTSH-HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------HHHH-HHHHHHHhHHHHHc-cc
Confidence 77777777777777775433233333332220000 0000 00000 11 12233 44
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLD 337 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 337 (482)
+++|.+.++++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...+...|++++|...|+
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555554444432 1234444444555555555555555555543211 2234455555555555555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----------ChhhHHHHHHHHhcCCChHHHHHHH
Q 038748 338 EMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL-----------NHENCRAAVRVYMDSDDPYVAIKFW 406 (482)
Q Consensus 338 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~ 406 (482)
++.+... .+...+..+...+...|++++|...++++.+..... +...+..+..++...|++++|..++
T Consensus 231 ~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5554321 134455555555555566666666555555432111 2445555566666666666666555
Q ss_pred HH
Q 038748 407 KY 408 (482)
Q Consensus 407 ~~ 408 (482)
+.
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-14 Score=140.29 Aligned_cols=371 Identities=8% Similarity=0.015 Sum_probs=264.7
Q ss_pred CCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHH-hhCCCcHHHHH----HHHHHHhc-C--CCC
Q 038748 65 VSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLL-GKNCLFDAMWD----AIKSMKKE-N--VLS 134 (482)
Q Consensus 65 ~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~--~~~ 134 (482)
-+.......+. ...|+.+.|..+|+.+.. .. |+...|...+... ...|+.+.|.+ +|+..... | +.+
T Consensus 44 ~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--~~-p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~ 120 (530)
T 2ooe_A 44 SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--KV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120 (530)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--TC-CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cC-CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc
Confidence 34444444554 447899999999998876 22 5888888887644 45677777665 77776553 3 356
Q ss_pred HHHHHHHHHHHHh---------hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-------------HhcCChHhHHHH
Q 038748 135 LATFASVFSSYVV---------ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI-------------CRDGKTIDAWQF 192 (482)
Q Consensus 135 ~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~ 192 (482)
...|...+....+ .|+++.|..+|++..+.........|....... .+.++++.|..+
T Consensus 121 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~ 200 (530)
T 2ooe_A 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRV 200 (530)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHH
Confidence 7888888877655 789999999999998832111123343322211 124567777777
Q ss_pred HHHhh-------C---CCCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 193 LRVVD-------G---RIKPD--------NDTYAILLEGWEKE----RDV----ANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 193 ~~~~~-------~---~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
+..+. . .++|+ ...|...+...... ++. ..+..+|++.... .|.+...|..
T Consensus 201 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~ 277 (530)
T 2ooe_A 201 AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 76521 1 13444 24566555443322 232 3677889888754 6777888888
Q ss_pred HHHHHHc-------cCCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 247 YLITLLK-------GCDGIY-------ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 247 l~~~~~~-------~~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
....+.. . |+++ +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+.+++ +.|+
T Consensus 278 ~~~~~~~~~~~~~~~-g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~ 353 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEK-GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDI 353 (530)
T ss_dssp HHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSS
T ss_pred HHHHHHHhchhhhhc-cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---cccc
Confidence 8888775 5 8887 8999999988632344678889999999999999999999999973 3554
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccChhhHHHH
Q 038748 313 --THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF-LVKGRKLWEASGLFNEMVKNENVLNHENCRAA 389 (482)
Q Consensus 313 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 389 (482)
...|..++..+.+.|++++|.++|++..+.... +...|...... +...|+.++|..+|+..++... -+...|..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~ 431 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAY 431 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 258999999999999999999999999886321 22333222222 3368999999999999987542 257889999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIENHC-SDL--SETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
+..+.+.|+.++|..+|+.....+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998642 232 247888888888899999999999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.7e-17 Score=145.92 Aligned_cols=276 Identities=16% Similarity=0.003 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+...|++++|..+|+.+.+... .+...+..+..++...|++++|.+.++.+....+.+..++..+...|..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 345555566666666666666666655432 2445555555666666666666666665443334455555666666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChh
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE--ECLTGQNLR 294 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~ 294 (482)
.|++++|...++++... .|++...+..+.... |+......+.. .+...|+++
T Consensus 102 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS---QPQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp TTCHHHHHHHHHHHHHT---STTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666655432 332222221111000 01111111112 255667777
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
+|.+.+..+.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777775221 33566677777777777777777777777766422 24556666667777777777777777776
Q ss_pred HhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038748 375 VKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-----------LSETGNLLVAGLCDMHMLPEAVKYAKG 443 (482)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (482)
.+.... +...+..+..+|...|++++|.+.++.+.+..... +...|..+..++...|++++|..++++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 664322 45566666667777777777777777666532111 245666666666667777766666653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-15 Score=140.70 Aligned_cols=365 Identities=13% Similarity=-0.007 Sum_probs=240.4
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc----
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE---------NVLSLATFASVFSSYVVADRVKDAITTFDVMEQY---- 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 164 (482)
......||.+...+...|++++|++.|++..+. .+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567899999999999999999999876542 2335678889999999999999999999877642
Q ss_pred -C-CC-CCHhhHHHHHHHHHhc--CChHhHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCC
Q 038748 165 -G-CK-HDVFALNSLLSAICRD--GKTIDAWQFLRVVDGRIKPDNDTYAILLEGW---EKERDVANAKKTFGEMVIEVGW 236 (482)
Q Consensus 165 -~-~~-~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 236 (482)
+ .. ....++..+..++... +++++|.+.|++.....+.+...+..+..++ ...++.++|++.+++... +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 11 1345566555555543 5789999999986554455666666655553 445777888888888764 4
Q ss_pred CCCChhhHHHHHHHHHcc---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCH
Q 038748 237 DPDNVPAYDSYLITLLKG---CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 237 ~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 313 (482)
.|++..++..+...+... .+++++|.+.+++..... +.+...+..+...+...|++++|...+.+..+.. +-+.
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~ 281 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA 281 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence 677776666665544432 167888999998887754 3456778888899999999999999999987332 3345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038748 314 HMYNMMISLYCYS-------------------NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEM 374 (482)
Q Consensus 314 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 374 (482)
.++..+...|... +..+.|...+++..+... .+...+..+...+...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5666665555321 235677777777776532 24566778888899999999999999998
Q ss_pred HhCCCccChh--hHHHHHH-HHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 375 VKNENVLNHE--NCRAAVR-VYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 375 ~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+....+... .+..+.. .+...|++++|+..|++..+ +.|+...... ....+.+++++..+.+ +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CC
Confidence 8865443221 2222322 23577899999999998887 4455432222 2233455566555554 24
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 452 TPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
+..+|..+..++...|++++|++.+++..+
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888888899999999999998887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=150.46 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=134.5
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
+.|++++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~~-----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 56779999999999833 358999999999999999999999653 5777999999999999999999998
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG 272 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~ 272 (482)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .| +..+|..+...+... |.+++|...|..+
T Consensus 84 l~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~p-n~~a~~~IGd~~~~~-g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 84 LQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------GP-NNAHIQQVGDRCYDE-KMYDAAKLLYNNV---- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC------------------CTTTHHHHHHHT----
T ss_pred HHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------CC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHh----
Confidence 8876654 5568889999999999999999988774 24 456999999999999 9999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 273 CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
..|..++.++.+.|++++|.+.+..+. ++.+|..++.+|...|+++.|......+. ..+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 368999999999999999999999872 78999999999999999999966554422 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH-cCCCC------ChhhHHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE-NHCSD------LSETGNLLV 425 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p------~~~~~~~li 425 (482)
.++..|.+.|++++|..+++...... .-....|+.+.-+|++- ++++..+.++.... .+++| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998765 34566777777777754 34444443333221 23333 357899999
Q ss_pred HHHHhcCChhHHHHHH
Q 038748 426 AGLCDMHMLPEAVKYA 441 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~ 441 (482)
..|...++++.|....
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999987743
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-15 Score=135.22 Aligned_cols=275 Identities=16% Similarity=0.069 Sum_probs=214.6
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPD--NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
++-....|++..|+..++.+... .|+ ......+.++|...|+++.|...++. ..|++..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCC
Confidence 44566789999999998876542 333 34667788999999999999976643 2444677888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 255 CDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 255 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 333 (482)
++.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.
T Consensus 79 -~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 79 -SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp -TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred -CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999877555 455666777899999999999999875 457788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 334 KLLDEMVYNGAFPDIQTYN---ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+.|+++.+.. |+....+ ..+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999863 5543221 22333445689999999999999874 3478889999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPE-AVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEEL 475 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 475 (482)
+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..-
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 864 3456788899999999999976 678999998776 44322 23456667777776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-14 Score=141.41 Aligned_cols=324 Identities=12% Similarity=0.054 Sum_probs=181.9
Q ss_pred CCCCHHHHHHHHH--hhcCCchhHhHHhhhhhcCCC-CCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHH
Q 038748 63 IRVSQETVEQVLK--FSYSHPGPAVKFFRWSAYQLN-DKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFA 139 (482)
Q Consensus 63 ~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (482)
-..+|..+....+ ...|.+.+|+++++.+...+. +.-+....+.++....+. +..+..+..+...... ..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 3466666666666 456778888888886664322 223445556666555555 4455555555444211 22
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.+++. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 255556666777777777766421 1122222222 4566666666666553 35666677777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
+++|.+.|.+. ++...|..++.++.+. |++++|.+.|...++.. ++....+.++.+|++.+++++...+
T Consensus 1121 ~kEAIdsYiKA--------dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--------DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 77777766443 2455666666666666 77777777776655543 2222233466666666666643333
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 379 (482)
.. .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++..
T Consensus 1190 I~--------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1190 IN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred Hh--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 21 234445555666666666666666666653 256666666666666666666666551
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334555555555555555555554332 22233344555556666666666666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-13 Score=138.05 Aligned_cols=337 Identities=10% Similarity=0.048 Sum_probs=261.7
Q ss_pred hHhHHhhhhhcC-CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhhCChhhHHHHH
Q 038748 83 PAVKFFRWSAYQ-LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV---LSLATFASVFSSYVVADRVKDAITTF 158 (482)
Q Consensus 83 ~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 158 (482)
.-.++.+|...- ..-..++.--...+.+|...|.+.+|+++++.....+. .+...-+.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 334566664432 12345666777888999999999999999999985543 3456667777777777 556777766
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDP 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 238 (482)
+..... + ..-+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++..
T Consensus 1045 ~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aervn------- 1103 (1630)
T 1xi4_A 1045 NRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERCN------- 1103 (1630)
T ss_pred HHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-------
Confidence 666531 2 3347778889999999999999864 12222233332 7789999999988662
Q ss_pred CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHH
Q 038748 239 DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNM 318 (482)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
+..+|..+..++... |++++|++.|.+. -|...|..++.+|.+.|++++|.+.+.... +. .++....+.
T Consensus 1104 -~p~vWsqLAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~--~~e~~Idt~ 1172 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETE 1172 (1630)
T ss_pred -CHHHHHHHHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--cccccccHH
Confidence 456899999999999 9999999999663 467788899999999999999999999875 33 344444556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD 398 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 398 (482)
++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|+
T Consensus 1173 LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 999999999988644332 2 356677778999999999999999999985 379999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 038748 399 PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKK 478 (482)
Q Consensus 399 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 478 (482)
+++|.+.+++. .+..+|..+-.+|...|++..|..+... +..++..+..++..|.+.|.+++|+.+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999876 3458999999999999999999887653 456778888999999999999999999986
Q ss_pred H
Q 038748 479 C 479 (482)
Q Consensus 479 m 479 (482)
-
T Consensus 1306 a 1306 (1630)
T 1xi4_A 1306 A 1306 (1630)
T ss_pred H
Confidence 5
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-13 Score=132.40 Aligned_cols=356 Identities=12% Similarity=-0.061 Sum_probs=238.6
Q ss_pred HHHhhcCCchhHhHHhhhhhcC-------CCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcC--------CCCHHH
Q 038748 73 VLKFSYSHPGPAVKFFRWSAYQ-------LNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKEN--------VLSLAT 137 (482)
Q Consensus 73 ll~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~ 137 (482)
.+....|+.++|++.|+..... ........+|+.+..+|...|++++|...+++..... +....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3446689999999999865431 1233446789999999999999999999999876531 234567
Q ss_pred HHHHHHHHHhh--CChhhHHHHHHHHHhcCCCCCHhhHHHHHHH---HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 138 FASVFSSYVVA--DRVKDAITTFDVMEQYGCKHDVFALNSLLSA---ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 138 ~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
+..+..++... +++++|++.|++..+... -+...+..+..+ +...++.++|++.+++...-.+.+..++..+..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 77666666554 579999999999988643 245555555544 345677888988888765444566777776665
Q ss_pred HHHh----cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 213 GWEK----ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL 288 (482)
Q Consensus 213 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 288 (482)
.+.. .|++++|.+.+++... ..|+...++..+...+... |++++|++.+++..+.. +-+..++..+..+|.
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~---~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALE---KAPGVTDVLRSAAKFYRRK-DEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 5544 5678899999998874 3777888999999999999 99999999999998764 234555665555543
Q ss_pred hc-------------------CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 289 TG-------------------QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 289 ~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
.. +..+.|...+....+.. +.+..++..+...|...|++++|+..|++..+....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 21 23566777777775322 3345567888999999999999999999998864433221
Q ss_pred --hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038748 350 --TYNILFE-FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 350 --~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
.+..+.. .....|+.++|...|++.++. .|+...... ....+.++++...+.+ +.+..+|+.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~ 438 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1222222 345789999999999999885 344322221 2234455566655543 345689999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|...|++++|++.|++..+.+
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHCC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-14 Score=124.45 Aligned_cols=237 Identities=8% Similarity=-0.032 Sum_probs=165.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--HhhHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--VFALNSLLS 178 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~ 178 (482)
...+......+...|++++|+..|++..+..+.+..++..+..++...|++++|++.++...+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445666677788888888888888888887776666788888888888888888888888877432222 233777788
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
.+...|++++|.+.|+......+.+..++..+..+|...|++++|...|++.. ...|++...+..+...+... +++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHH-HHH
Confidence 88888888888888887655445567788888888888888888888888775 34676677777666344445 688
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhcccCCCCC------HHHHHHHHHHHHhcCCH
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN---LRGAEFIWGAMVGRIGFRPD------THMYNMMISLYCYSNET 329 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~ 329 (482)
++|++.|++..+.. +.+...+..+...+...|+ +++|...+++.++...-.|+ ..+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 88888888777653 2235556666666666666 66677777766533222233 24566666667777777
Q ss_pred HHHHHHHHHHHHC
Q 038748 330 GAAMKLLDEMVYN 342 (482)
Q Consensus 330 ~~a~~~~~~m~~~ 342 (482)
++|.+.|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777664
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-14 Score=123.56 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC--CCCC----H
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG--CNPG----M 277 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~ 277 (482)
...+..+...+...|++++|...|++.... . ++..++..+...+... |++++|++.+++..+.. ..++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~---~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H---KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S---CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h---ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 467888888999999999999999998865 3 3567888888888888 99999999999887642 1112 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
.++..+...+...|++++|...|+.+.+ ..|+. ..+...|++++|...++.+.+... .+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLT---EHRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh---cCchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHH
Confidence 7788888888899999999999998863 24553 345666788899999988887522 244567777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (482)
+...|++++|...++++.+.... +...+..+..+|...|++++|.+.++...+.. +.+...|..+...|...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 88889999999999988876433 56778888888889999999999998888754 23457788888888889999999
Q ss_pred HHHHHHHHHc
Q 038748 438 VKYAKGMAEK 447 (482)
Q Consensus 438 ~~~~~~m~~~ 447 (482)
...+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=120.97 Aligned_cols=197 Identities=12% Similarity=-0.069 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038748 276 GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILF 355 (482)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 355 (482)
+...+..+...+...|++++|...|+..++.. +.+...+..+...+.+.|++++|+..|++..+... -+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34445555555555566666665555554111 22345555555555566666666666655555321 1334455555
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 356 EFLVKG-----------RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 356 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
..+... |++++|...+++..+..+. +...+..+..+|...|++++|.+.|++..+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 6777777777776664332 45566666667777777777777777776655 555666667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
..+|...|++++|+..|++..+... .+...+..+..++.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777777766542 34556666666777777777777766654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-14 Score=121.58 Aligned_cols=223 Identities=13% Similarity=0.071 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC---CCCCC----HHHHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG---RIKPD----NDTYAI 209 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~----~~~~~~ 209 (482)
.|..+...+...|++++|...|+...+.. .+...+..+..++...|++++|.+.++.... ...++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555554443 3444455555555555555555555544322 11111 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT 289 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 289 (482)
+..+|...|++++|...|++.... .|+ . ..+... |++++|.+.++.+.... +.+...+..+...+..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---~~~-~-------~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---HRT-A-------DILTKL-RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCC-H-------HHHHHH-HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---Cch-h-------HHHHHH-hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 555555555555555555555432 221 1 223333 55566666665555532 1233445555556666
Q ss_pred cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038748 290 GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASG 369 (482)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 369 (482)
.|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+... .+...+..+...+...|++++|..
T Consensus 152 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666654221 23455566666666666666666666666665421 235556666666666666666666
Q ss_pred HHHHHHhC
Q 038748 370 LFNEMVKN 377 (482)
Q Consensus 370 ~~~~~~~~ 377 (482)
.++...+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-14 Score=119.61 Aligned_cols=208 Identities=12% Similarity=-0.062 Sum_probs=106.2
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
++...+..+...+.+.|++++|...|++..+..+.+...+..+..++.+.|++++|+..|++..+... .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 45566777777777777777777777777777666777777777777777777777777777766542 24555666666
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
++...+. .. .. .+...|++++|+..|++..+ +.|++..++..+...+... |++
T Consensus 82 ~~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~-g~~ 134 (217)
T 2pl2_A 82 AYVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALL-GER 134 (217)
T ss_dssp HHHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHc-CCh
Confidence 6655500 00 00 00112555555555555542 2444444555555555555 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
++|+..|++..+.. .+...+..+..++...|++++|...|+..++.. +.+...+..+...+...|++++|+..|++
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555554443 344444455555555555555555555544211 22344444455555555555555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=117.49 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=102.8
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|...|+++....+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 344555556666666666666666666665555555666666666666666666666666655432 2444555555555
Q ss_pred HhcCChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
...|++++|.++++.+.. ..+.+...+..+..+|...|++++|...|++.... .|.+...+..+...+... |++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-g~~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKE-REY 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHc-CCH
Confidence 555555555555555443 22334445555555555555555555555555432 333344444444444444 555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++|...++++.+.. +.+...+..+...+...|++++|.+.++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555444321 123333444444444444444444444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-12 Score=113.39 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHH
Q 038748 203 DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMT 278 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~ 278 (482)
+..++..+...|...|++++|...|++... |++..++..+...+.. . +++++|++.|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---CHH
Confidence 455666667777777777777777777663 3345566666666666 6 77777777777777665 556
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhh
Q 038748 279 FFKLAFEECLT----GQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQT 350 (482)
Q Consensus 279 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~ 350 (482)
.+..+...|.. .+++++|.+.|+... +.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 66667777777 777777777777775 322 56667777777777 778888888887777764 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHH
Q 038748 351 YNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGN 422 (482)
Q Consensus 351 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 422 (482)
+..+...+.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+. ...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 6666666666 778888888888777754 44566677777777 7888888888888777542 45666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038748 423 LLVAGLCD----MHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (482)
.+...|.. .+++++|.+.|++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777 788888888888877776
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-13 Score=115.46 Aligned_cols=199 Identities=9% Similarity=-0.042 Sum_probs=117.8
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+...|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|.+.++.+.+... .+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4556666667777777777777777777666665666666777777777777777777776666432 245556666666
Q ss_pred HHhc-CChHhHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC
Q 038748 180 ICRD-GKTIDAWQFLRVVDG--RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD 256 (482)
Q Consensus 180 ~~~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 256 (482)
+... |++++|...++.+.. ..+.+...+..+..++...|++++|...++++... .|++...+..+...+... |
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA-G 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH-T
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc-C
Confidence 6666 666666666666544 22233455666666666666666666666666532 344455555555555555 6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666666655554321123444444444455555555555555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-12 Score=114.47 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=192.9
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhcccCCCCCH
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLT----GQNLRGAEFIWGAMVGRIGFRPDT 313 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 313 (482)
|.+..++..+...+... +++++|++.|++..+.+ +...+..+...+.. .+++++|...|++.. +.+ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKE-KDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CH
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CH
Confidence 45677888888889999 99999999999998843 56678888889999 999999999999997 433 77
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhh
Q 038748 314 HMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHEN 385 (482)
Q Consensus 314 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 385 (482)
..+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 888899999999 999999999999999875 67788888889998 999999999999999876 5567
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 386 CRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 386 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
+..+...|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7788888887 899999999999999865 35677888888988 999999999999998876 367788
Q ss_pred HHHHHHHH----hccHHHHHHHHHHHhh
Q 038748 458 KLKQILIK----ARKEAVYEELLKKCKA 481 (482)
Q Consensus 458 ~l~~~~~~----~g~~~~a~~~~~~m~~ 481 (482)
.+...|.+ .+++++|.+.+++..+
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 88888988 8999999999988653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-13 Score=118.44 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLA 283 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l 283 (482)
.+......+...|++++|...|++... ..|++..++..+...+... |++++|++.+++..+....++ ...|..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA---KKYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 344455555666666666666666653 2444455566666666666 666666666666655221111 2235556
Q ss_pred HHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 038748 284 FEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK 363 (482)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 363 (482)
...+...|++++|.+.|+...+.. +.+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 666666666666666666665221 2234556666666666666666666666665541 1233444444423333446
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCC
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENH-CSDL------SETGNLLVAGLCDMHM 433 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~ 433 (482)
+++|...|+++.+.... +...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 66777766666654322 34455555555655565 666666666665421 1122 1355666667777777
Q ss_pred hhHHHHHHHHHHHcC
Q 038748 434 LPEAVKYAKGMAEKG 448 (482)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (482)
+++|.+.|++..+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-13 Score=121.23 Aligned_cols=234 Identities=5% Similarity=-0.050 Sum_probs=183.1
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR-VKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
+...|+.+...+...|++++|+..|+++...++.+..+|+.+..++...|+ +++|+..|++..+... -+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 356788888889999999999999999999988888999999999999996 9999999999988754 36788888999
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..|+++.. +.|++..+|+.+...+....|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999987665677888999999999999999999999999874 47888888988888888831665
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC----
Q 038748 259 YET-----VNSLKRMMERGCNPGMTFFKLAFEECLTGQ--NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN---- 327 (482)
Q Consensus 259 ~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 327 (482)
++| ++.|++..... +-+...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 47777776643 224566777777777766 577777777665 22 2345666777777777653
Q ss_pred -----CHHHHHHHHHHH-HH
Q 038748 328 -----ETGAAMKLLDEM-VY 341 (482)
Q Consensus 328 -----~~~~a~~~~~~m-~~ 341 (482)
..++|+++|+++ .+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE 347 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 247777777777 44
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-13 Score=115.14 Aligned_cols=202 Identities=7% Similarity=-0.073 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|.+.|+.+.+... .+...+..+...+...|++++|.+.++++....+.+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 45566777777777888888888777776542 35666777777777777777777777775543445666777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLR 294 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (482)
...|++++|...++++.. .+..|.+...+..+...+... |++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777654 234555556666666666666 77777777777666543 223555666666666666666
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 295 GAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
+|...++.+.+. .+.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666421 1234455555666666666666666666666553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=119.33 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=112.8
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
.+...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|...|+.+.+... .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 44556666666777777777777777777776666666777777777777777777777777666532 25566666666
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
.+...|++++|.+.++.+....+.+...+..+...+...|++++|...++++... .|++...+..+...+... |++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANE-GML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH-TCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHc-CCH
Confidence 6666777777777666654444455666666666666777777777766666533 444555566666666666 666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++|++.++++.+.. +.+..++..+..++...|++++|.+.++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666655542 2234455555556666666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-14 Score=124.86 Aligned_cols=93 Identities=12% Similarity=-0.067 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 206 TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFE 285 (482)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 285 (482)
++..+..+|...|++++|...|++.... .|++..++..+...+... |++++|++.|++..+.. +.+...+..+..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 3444444444444444444444444321 333333444444444444 44444444444443321 112233333333
Q ss_pred HHHhcCChhHHHHHHHHh
Q 038748 286 ECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~ 303 (482)
.+...|++++|...|+.+
T Consensus 120 ~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 344444444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=125.38 Aligned_cols=118 Identities=8% Similarity=-0.151 Sum_probs=60.4
Q ss_pred hCCCcHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh
Q 038748 113 KNCLFDAMWDAIKSMKKENV----LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID 188 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 188 (482)
..|++++|+..|+++.+... .+..++..+...+...|++++|...|+.+.+... .+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34555556666655555421 1344555555555555555555555555555432 234455555555555555555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|...|++.....+.+..++..+..+|...|++++|...|+++.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555433233344455555555555555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-13 Score=112.57 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLA 283 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 283 (482)
...+..+...+...|++++|...|+++... .|++...+..+...+... |++++|.+.++++.+.. +.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 344555555555555555555555555432 343444555555555555 55555555555554432 2234444445
Q ss_pred HHHHHhc-CChhHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 038748 284 FEECLTG-QNLRGAEFIWGAMVGRIGFRPD-THMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKG 361 (482)
Q Consensus 284 i~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 361 (482)
...+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|+..++++.+... .+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHc
Confidence 5555555 555555555555542 111121 33444444455555555555555555444311 1233444444444444
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|++++|..+++.+.+.....+...+..+...+...|+.+.|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444444444433211133333334444444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-12 Score=120.25 Aligned_cols=217 Identities=8% Similarity=-0.005 Sum_probs=129.7
Q ss_pred HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD-VANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 170 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
...|+.+...+...|++++|++.|+.+....+-+..+|+.+..++...|+ +++|+..|++... +.|++..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHH
Confidence 45567777777777888888888877655556677777777777777775 8888887777764 3676777777777
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh-cC
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY-SN 327 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~ 327 (482)
..+... |++++|+..|+++.+.. +-+...|..+..++...|++++|...++++++.. +-+...|+.+..++.. .|
T Consensus 174 ~~~~~~-g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWL-RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHH-TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc-cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC
Confidence 777777 77777777777776643 2245566666666666666666666666665221 2245566666666666 44
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC
Q 038748 328 ETGAA-----MKLLDEMVYNGAFPDIQTYNILFEFLVKGR--KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS 396 (482)
Q Consensus 328 ~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (482)
..++| +..|++..+.... +...|+.+...+...| ++++|.+.+.++ +.. ..+...+..+..+|.+.
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 43555 2445554443111 2334444444444444 345555555444 211 11333444444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-13 Score=125.26 Aligned_cols=372 Identities=10% Similarity=-0.032 Sum_probs=243.1
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC---
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF---DAMWDAIKSMKKENVLSLATFASVFSSYVVAD--- 149 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 149 (482)
...|+++.|++.|...... + ++.++..+...|...|+. ++|...|+...+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CC
T ss_pred HhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCC
Confidence 4578999999999987663 3 445666666777777877 8999999998866 5556667777555554
Q ss_pred --ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhH---HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 150 --RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA---WQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 150 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
++++|...|++..+.|. ...+..|...|...+..+.+ .+.+..... ..+...+..+...|...+.++++.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCH
Confidence 78899999999998764 23677788888776654444 334443321 224556777888888888666555
Q ss_pred HHHHHhHHh-cCCCCCChhhHHHHHHHHHccCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHH
Q 038748 225 KTFGEMVIE-VGWDPDNVPAYDSYLITLLKGCD---GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTG----QNLRGA 296 (482)
Q Consensus 225 ~~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a 296 (482)
.....+.+. ....| .++..+...+... | +.++|++.|++..+.| .++...+..+...|... +++++|
T Consensus 162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 162 DDVERICKAALNTTD---ICYVELATVYQKK-QQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHHTTTCT---THHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 543333322 12233 3788888888887 9 9999999999999887 34555555666666554 799999
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----CHHHHH
Q 038748 297 EFIWGAMVGRIGFRPDTHMYNMMISL-Y--CYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGR-----KLWEAS 368 (482)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~ 368 (482)
.+.|+... +-+...+..|... | ...+++++|+..|++..+.| +...+..+...|. .| ++++|.
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 99999984 3355666777666 4 46899999999999999876 5566666777676 45 999999
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHH
Q 038748 369 GLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKY 440 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 440 (482)
.+|++.. .| +...+..|...|.. ..++++|.+.|+...+.|. ......|...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999987 33 55667777777776 4489999999999998774 2455556666653 4689999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 441 AKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 441 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|+...+.|.. +.......+......++.++|..+.+++++
T Consensus 381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999998853 333333333333445567778887777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-13 Score=116.11 Aligned_cols=123 Identities=11% Similarity=-0.016 Sum_probs=41.9
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+...+...|++++|..+|+++....+.+..++..+...|...|++++|...++++... .|++..++..+...+...
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~- 104 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL---DSSAATAYYGAGNVYVVK- 104 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCcchHHHHHHHHHHHHh-
Confidence 3333333444444444444333322333344444444444444444444444443321 222333333333333333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44444444444433321 112233333333334444444444444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=126.73 Aligned_cols=301 Identities=13% Similarity=0.037 Sum_probs=185.2
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCC
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD----NDTYAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDN 240 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~ 240 (482)
.....+......+...|++++|...|++.....+.+ ..++..+...|...|++++|...+++..... +..|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 445556667777888888888888888754432333 3567777888888888888888888876531 112223
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCC--------------------hhH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERG----CNP-GMTFFKLAFEECLTGQN--------------------LRG 295 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~g~--------------------~~~ 295 (482)
..++..+...+... |++++|+..+++..+.. ..+ ...++..+...+...|+ +++
T Consensus 87 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45666677777777 88888888887766531 110 13356667777777777 777
Q ss_pred HHHHHHHhhcc---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHH
Q 038748 296 AEFIWGAMVGR---IGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA-FPD----IQTYNILFEFLVKGRKLWE 366 (482)
Q Consensus 296 a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 366 (482)
|...+....+. .+..+ ...++..+...|...|++++|...+++..+... .++ ...+..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777765421 11111 134566677777777788888777777654310 011 1256666677777777777
Q ss_pred HHHHHHHHHhCCCc----c-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChhH
Q 038748 367 ASGLFNEMVKNENV----L-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGNLLVAGLCDMHMLPE 436 (482)
Q Consensus 367 a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~ 436 (482)
|...+++..+.... + ...++..+...|...|++++|.+.++...+. +-.+. ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776643111 1 1345666777777777777777777776642 11111 2456666677777777777
Q ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhccH
Q 038748 437 AVKYAKGMAEKGIQVT-----PFALSKLKQILIKARKE 469 (482)
Q Consensus 437 A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~ 469 (482)
|...+++..+..-... ..++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7777777766543222 12344444444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=127.85 Aligned_cols=171 Identities=12% Similarity=-0.023 Sum_probs=107.7
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHHHhc----CCCC-
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQY----GCKH- 168 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~- 168 (482)
......+......+...|++++|...|+++.+..+.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455666777788888888888888888888876544 356777888888888888888888876542 1111
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCC--CCCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGR--IKPD----NDTYAILLEGWEKERD--------------------VAN 222 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~ 222 (482)
...++..+...+...|++++|...+++.... ..++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2445677777788888888888877764320 0111 4466777777777777 666
Q ss_pred HHHHHHHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHH
Q 038748 223 AKKTFGEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 223 a~~~~~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
|...+++.... .+..|....++..+...+... |++++|++.+++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Confidence 66666655421 111111223444455555555 55555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-13 Score=125.89 Aligned_cols=131 Identities=8% Similarity=-0.115 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCC---Chh
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENV-LN----HENCRAAVRVYMDSDDPYVAIKFWKYMIENH--CSD---LSE 419 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p---~~~ 419 (482)
.+..+...+...|++++|..++++..+.... .+ ...+..+...|...|++++|.+.+++..+.. ... ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555566666666666666655542111 01 1245556666666666666666666655321 000 124
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEKG----I-QVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
++..+...|...|++++|..++++..+.. . .....++..+..++.+.|++++|.+.+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666666666666666666654321 0 0112355556666666666666666666543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=122.81 Aligned_cols=267 Identities=10% Similarity=-0.045 Sum_probs=150.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCC----hhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDN----VPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFK 281 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~ 281 (482)
...+...|++++|...|+++... .|++ ...+..+...+... |++++|.+.+++.... +..+ ...++.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34444455555555555554432 2322 12344444444444 5555555555443321 1111 133445
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 038748 282 LAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNE--------------------TGAAMKLLD 337 (482)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~ 337 (482)
.+...+...|++++|...+.+..+...-.++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5555556666666666666554321111111 2355556666666666 666666666
Q ss_pred HHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----ccChhhHHHHHHHHhcCCChHHHHHHHH
Q 038748 338 EMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN-----VLNHENCRAAVRVYMDSDDPYVAIKFWK 407 (482)
Q Consensus 338 ~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~ 407 (482)
+..+. +..+ ....+..+...+...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54431 1111 123566666677777888888877777664311 1112356677777888888888888887
Q ss_pred HHHHc----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 038748 408 YMIEN----HCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----IQ-VTPFALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 408 ~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
+..+. +..+. ..++..+...|...|++++|...+++..+.. -. ....++..+..++.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76642 11111 3466677778888888888888888775431 11 113467778888888888888888888
Q ss_pred HHhh
Q 038748 478 KCKA 481 (482)
Q Consensus 478 ~m~~ 481 (482)
+..+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=127.96 Aligned_cols=277 Identities=9% Similarity=-0.045 Sum_probs=155.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhhCChhhHHHHHHHHHhc----CC-CCCHhh
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----ATFASVFSSYVVADRVKDAITTFDVMEQY----GC-KHDVFA 172 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 172 (482)
..+..+...+...|++++|+..|+++.+..+.+. .+|..+...|...|++++|...+++..+. +. .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677788888888888888888765443 46777888888888888888888877653 11 123455
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhC-----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDG-----R-IKPDNDTYAILLEGWEKERD-----------------VANAKKTFGE 229 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 229 (482)
+..+...|...|++++|...+++... + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 67777777788888888887776432 1 12234466677777777777 6666666655
Q ss_pred hHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 038748 230 MVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVG 305 (482)
Q Consensus 230 ~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 305 (482)
.... .+..+....++..+...+... |++++|++.+++..+.... .+.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~---------------------------- 259 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDR---------------------------- 259 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcCCc----------------------------
Confidence 4321 111111223444444555555 5555555555544331100 000
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 038748 306 RIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA----F-PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN- 379 (482)
Q Consensus 306 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 379 (482)
.....++..+...|...|++++|...+++..+... . ....++..+...+...|++++|..++++..+...
T Consensus 260 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 260 ----AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00012444455555555555555555554433210 0 0123455555556666666666666665544210
Q ss_pred ----ccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 380 ----VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 380 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.....++..+..+|...|++++|.+.+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11123555666666666777777766666655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-13 Score=125.61 Aligned_cols=343 Identities=10% Similarity=-0.019 Sum_probs=221.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCCh---hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRV---KDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
+...+.+.|++++|.++|++..+.+.++ ++..+...|...|+. ++|...|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCT--GGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 5667778899999999999998887433 455566666777888 8999999998863 556667777756555
Q ss_pred C-----ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 184 G-----KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVAN---AKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 184 g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+ +.++|..+|++......+ ..+..|...|...+..+. +.+.+...... | +..+...+...+...
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g----~~~a~~~Lg~~y~~~- 154 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G----YPEAGLAQVLLYRTQ- 154 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T----CTTHHHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcC-
Confidence 5 788999999985432222 377777777777665444 44444444322 2 344677777888777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc----CC
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQ---NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS----NE 328 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~ 328 (482)
+.++++......+.+.-...+...+..+...|...| +.++|.+.|.... +.| .++...+..|...|... ++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 766666555444433222233347788888898999 9999999999986 444 55666656677777654 79
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC-----ChH
Q 038748 329 TGAAMKLLDEMVYNGAFPDIQTYNILFEF-L--VKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD-----DPY 400 (482)
Q Consensus 329 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 400 (482)
+++|+..|++.. .| +...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 32 44555555555 3 45899999999999999877 5667777777777 45 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hccHHHH
Q 038748 401 VAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVY 472 (482)
Q Consensus 401 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 472 (482)
+|.+.|+... .| +...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999887 33 44666677766665 3489999999999988874 3334445444442 3477888
Q ss_pred HHHHHHHh
Q 038748 473 EELLKKCK 480 (482)
Q Consensus 473 ~~~~~~m~ 480 (482)
..++++..
T Consensus 378 ~~~~~~A~ 385 (452)
T 3e4b_A 378 YVFSQLAK 385 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=110.86 Aligned_cols=218 Identities=5% Similarity=-0.048 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------hCCh-------hhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHh
Q 038748 118 DAMWDAIKSMKKENVLSLATFASVFSSYVV-------ADRV-------KDAITTFDVMEQY-GCKHDVFALNSLLSAICR 182 (482)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~ 182 (482)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+. . +-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHh
Confidence 567777777777666677777777666653 3554 6666666666652 2 1234456666666666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH-ccCCChHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL-KGCDGIYE 260 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~~ 260 (482)
.|++++|.++|++.....+.+.. +|..+...+.+.|++++|..+|++..+ ..|.+...|........ .. |++++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~-~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCS-KDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTS-CCHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHc-CCHHH
Confidence 66666666666665442222333 566666666666666666666666542 23333333322222111 12 45555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP--DTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
|.++|+...+.. +-+...+..++..+.+.|++++|..+|++.++...+.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555444421 12334444444444444444444444444432111222 233444444444444444444444444
Q ss_pred HHH
Q 038748 339 MVY 341 (482)
Q Consensus 339 m~~ 341 (482)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=120.16 Aligned_cols=228 Identities=6% Similarity=-0.123 Sum_probs=130.3
Q ss_pred HHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHH
Q 038748 249 ITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNM 318 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 318 (482)
..+... |++++|++.+++..+. +-.+ ...++..+...+...|+++.|...+.+..+-..-.+ ...+++.
T Consensus 111 ~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 111 MYELDQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 334444 6666666666665542 1111 234555666666666666666666666542211111 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccChhhHHH
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHENCRA 388 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 388 (482)
+...|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+++..+ ........++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666777777777777777666542100 11 13566666777777777777777777665 221223455667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIEN----HCSDLSETGNLLVAGLCDMHM---LPEAVKYAKGMAEKGIQVT-PFALSKLK 460 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l~ 460 (482)
+..+|.+.|++++|.+.+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 777777777777777777766532 111111234556666667777 55666666554 22222 24566677
Q ss_pred HHHHHhccHHHHHHHHHHHh
Q 038748 461 QILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 461 ~~~~~~g~~~~a~~~~~~m~ 480 (482)
..|.+.|++++|.+.+++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=122.05 Aligned_cols=276 Identities=12% Similarity=0.016 Sum_probs=146.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhCChhhHHHHHHHHHhc----CCCC-CHhhH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS----LATFASVFSSYVVADRVKDAITTFDVMEQY----GCKH-DVFAL 173 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 173 (482)
.+......+...|++++|...|+++.+..+.+ ...+..+...+...|++++|.+.+++..+. +..+ ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445566677788888888888777765544 356667777777778888887777765442 1111 23456
Q ss_pred HHHHHHHHhcCChHhHHHHHHHhhCC--CCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 038748 174 NSLLSAICRDGKTIDAWQFLRVVDGR--IKPD----NDTYAILLEGWEKERD--------------------VANAKKTF 227 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 227 (482)
..+...+...|++++|...+++.... ..++ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 66667777777777777777664220 0111 3356666666666676 66666666
Q ss_pred HHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 228 GEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 228 ~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++.... .+..+....++..+...+... |++++|.+.+++..+..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-------------------------------- 213 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIA-------------------------------- 213 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH--------------------------------
Confidence 554321 111111122344444444444 55555555555443210
Q ss_pred cccCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038748 305 GRIGF-RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE 378 (482)
Q Consensus 305 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 378 (482)
...+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00000 001224444555555555555555555544331 0000 02344555555666666666666665554321
Q ss_pred C-----ccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 379 N-----VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 379 ~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
. .....++..+...|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 11123455566666666666666666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-10 Score=111.50 Aligned_cols=418 Identities=8% Similarity=-0.020 Sum_probs=275.0
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHh--hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHH
Q 038748 54 VEDVLDKTLIRVSQETVEQVLKF--SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMK 128 (482)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~ll~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 128 (482)
+++.+... +.+......++.. ..+..+.+..+|+.+.. .++.+...|...+..-.+.++ ++.+..+|++..
T Consensus 55 lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 55 LNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44444443 4566677777773 35678888888888887 567778888888888888888 889999999888
Q ss_pred hcCC--CCHHHHHHHHHHHHhhCCh--------hhHHHHHHHHHhc-CC-CCC-HhhHHHHHHHHH---------hcCCh
Q 038748 129 KENV--LSLATFASVFSSYVVADRV--------KDAITTFDVMEQY-GC-KHD-VFALNSLLSAIC---------RDGKT 186 (482)
Q Consensus 129 ~~~~--~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~ll~~~~---------~~g~~ 186 (482)
...+ ++...|...+....+.++. +.+.++|+..... |. .++ ...|...+.... ..+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 8764 7888888887776666554 3344777766553 65 443 456777666543 23456
Q ss_pred HhHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCC-------------HHHHHHHHHHhHHh-cCCC---CCC-------
Q 038748 187 IDAWQFLRVVDGRIKP--DNDTYAILLEGWEKERD-------------VANAKKTFGEMVIE-VGWD---PDN------- 240 (482)
Q Consensus 187 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~~-~~~~---p~~------- 240 (482)
+.+..+|+.... ++. -..+|......-...+. ++.|...+.++..- .++. |..
T Consensus 211 ~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 211 QYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 778888888654 222 23445544333222222 12233333332211 0111 110
Q ss_pred ------------hhhHHHHHHHHHccCC-C------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHH
Q 038748 241 ------------VPAYDSYLITLLKGCD-G------IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE-FIW 300 (482)
Q Consensus 241 ------------~~~~~~l~~~~~~~~~-~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~ 300 (482)
...|...+..--.. + . .+.+..+|++.... ++-....|...+..+...|+.++|. ++|
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~-~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDN-KLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12233333222221 1 1 22345667776664 3446677777788888889999996 999
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HhhHHHHHHHHH
Q 038748 301 GAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA---------FPD------------IQTYNILFEFLV 359 (482)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~ 359 (482)
+..+. .++.+...|-..+...-+.|++++|.++|+.+.+... .|+ ...|...+....
T Consensus 368 ~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 368 KLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99873 3345666788888888999999999999999886410 132 235777777778
Q ss_pred hcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 038748 360 KGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAV 438 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 438 (482)
+.|..+.|..+|....+.........|...+..-.+. ++++.|.++|+...+. ++-+...|...+......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8899999999999998862222334444443333344 4599999999999876 3345567778888888899999999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 439 KYAKGMAEKGIQV--TPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 439 ~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+|++.......+ ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998765322 346788888888899999999999999864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-12 Score=116.52 Aligned_cols=233 Identities=9% Similarity=-0.045 Sum_probs=154.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC--C----CCCHHHH
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMERG--C----NPGMTFF 280 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~ 280 (482)
....+...|++++|...|++......-.++ ...++..+...+... |++++|++.+++..+.- . .....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 445556667777777777766532111222 234566666666666 77777777777665421 1 0113466
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNETGAAMKLLDEMVYN----GA-FPDIQTY 351 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~ 351 (482)
..+...|...|++++|...+.+.++...-..+ ..++..+...|...|++++|+..|++..+. +. .....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 77778888888888888888877522111112 246777888888999999999988887762 22 2335667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCCh-hhHHH
Q 038748 352 NILFEFLVKGRKLWEASGLFNEMVKNE----NVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLS-ETGNL 423 (482)
Q Consensus 352 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~ 423 (482)
..+...+...|++++|...+++..+.. -......+..+...|...|+ +++|..+++.. +..|+. ..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 888888889999999999988877541 11122335667788888888 66666666654 333332 46677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-11 Score=110.40 Aligned_cols=217 Identities=9% Similarity=-0.038 Sum_probs=180.4
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHh-------hCCCc-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLG-------KNCLF-------DAMWDAIKSMKK-ENVLSLATFASVFSSYV 146 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~li~~~~ 146 (482)
+.|..+|+.+.. ..+.++..|..++..+. +.|++ ++|..+|++... ..+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 577788887776 45667888988888876 45886 899999999999 46778889999999999
Q ss_pred hhCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 038748 147 VADRVKDAITTFDVMEQYGCKHD-VF-ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE-KERDVANA 223 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 223 (482)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.....+.+...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 343 33 79999999999999999999999977655566666665544433 36999999
Q ss_pred HHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 038748 224 KKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNP--GMTFFKLAFEECLTGQNLRGAEFIW 300 (482)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 300 (482)
..+|++..+. .|++...|..++..+... |++++|..+|++..... ++| ....|..++....+.|+.+.|..++
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999854 677888999999999998 99999999999999863 455 3667888899999999999999999
Q ss_pred HHhhcc
Q 038748 301 GAMVGR 306 (482)
Q Consensus 301 ~~~~~~ 306 (482)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998733
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-12 Score=103.93 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=129.2
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
++..|..+...+...|++++|++.|++..+.++.+..++..+..++.+.|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 5667888888888888888888888888888777778888888888888888888888888777543 355666777777
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...++++.+.+.+.......+.+...+..+..+|.+.|++++|+..|++..+. .|++..++..+...+... |+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~-g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGK-GLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHC-CCHH
Confidence 778888888888887765555667777888888888888888888888877643 677777788888888877 8888
Q ss_pred HHHHHHHHHHHc
Q 038748 260 ETVNSLKRMMER 271 (482)
Q Consensus 260 ~a~~~~~~m~~~ 271 (482)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-10 Score=108.14 Aligned_cols=391 Identities=8% Similarity=-0.014 Sum_probs=264.5
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC---hhhHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR---VKDAIT 156 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~ 156 (482)
.+.+....|+.... ..+.|..+|..++..+.+.+.++.+..+|+++....+.+...|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 45556656665555 4567999999999999999999999999999999988889999999999889899 999999
Q ss_pred HHHHHHhcC-CCCCHhhHHHHHHHHHhcCCh--------HhHHHHHHHhhC--CC-CC-CHHHHHHHHHHHHh-------
Q 038748 157 TFDVMEQYG-CKHDVFALNSLLSAICRDGKT--------IDAWQFLRVVDG--RI-KP-DNDTYAILLEGWEK------- 216 (482)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~l~~~~~~------- 216 (482)
+|+...... ..|++..|..-+.-..+.++. +.+.++|+.... |. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998863 247888888888776666554 334467777432 44 34 56788888876543
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCCC-h-hhHH---HHHHHHHccC---------CChHHHHHHHHHHHH--cCCC----
Q 038748 217 --ERDVANAKKTFGEMVIEVGWDPDN-V-PAYD---SYLITLLKGC---------DGIYETVNSLKRMME--RGCN---- 274 (482)
Q Consensus 217 --~~~~~~a~~~~~~~~~~~~~~p~~-~-~~~~---~l~~~~~~~~---------~~~~~a~~~~~~m~~--~~~~---- 274 (482)
.++++.+..+|+..+. .|.. . ..|. .+-..+.... ..++.|...+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~----iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC----QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT----SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred HHHhHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 4467888999998873 3421 1 2222 2222210000 012223334433322 1111
Q ss_pred -----------C-----C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCC
Q 038748 275 -----------P-----G---MTFFKLAFEECLTGQ-------NLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNE 328 (482)
Q Consensus 275 -----------~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 328 (482)
| + ...|...+..--..+ ..+.+..+|++.+... +-....|...+..+...|+
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCc
Confidence 1 0 123444443332222 1234556788876433 4467788888888888899
Q ss_pred HHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------ccC------------hhhH
Q 038748 329 TGAAM-KLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN---------VLN------------HENC 386 (482)
Q Consensus 329 ~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~ 386 (482)
.++|. .+|+..... ++.+...|-..+....+.|++++|.++|+.+++... .|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99997 999999874 333555566777888889999999999999886410 131 2367
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 387 RAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDLSETGNLLVAGLCDM-HMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 387 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
...++...+.|+.+.|.++|....+. +. .....|-..+..-.+. ++.+.|.++|+...+. ..-+...+...+....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 77888888889999999999999875 21 1223343332222333 5599999999999876 3346667778888888
Q ss_pred HhccHHHHHHHHHHHhh
Q 038748 465 KARKEAVYEELLKKCKA 481 (482)
Q Consensus 465 ~~g~~~~a~~~~~~m~~ 481 (482)
..|+.+.|..+|++..+
T Consensus 516 ~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 516 YVNEESQVKSLFESSID 532 (679)
T ss_dssp HHTCHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-12 Score=121.33 Aligned_cols=212 Identities=10% Similarity=-0.068 Sum_probs=146.3
Q ss_pred chhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHH
Q 038748 81 PGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF-DAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFD 159 (482)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 159 (482)
.+.++..++.... ..+.+...|..+...+...|++ ++|++.|++..+..+.+..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555554443 3445677777777777778888 888888888777777677777778888888888888888887
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhc---------CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 038748 160 VMEQYGCKHDVFALNSLLSAICRD---------GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE--------RDVAN 222 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 222 (482)
...+.. |+...+..+..++... |++++|.+.|++.....+.+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 777653 5567777777777777 7777777777775544455677777777777777 77777
Q ss_pred HHHHHHHhHHhcCCCC---CChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 223 AKKTFGEMVIEVGWDP---DNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 223 a~~~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
|+..|++.... .| ++..+|..+...+... |++++|++.|++..+.. +-+...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777643 45 5666777777777777 77777777777766643 22344566666666666666666654
Q ss_pred HH
Q 038748 300 WG 301 (482)
Q Consensus 300 ~~ 301 (482)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-13 Score=119.33 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc-----
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG-----WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----- 271 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----- 271 (482)
.+..++..+...+...|++++|..+|+++..... -.|....++..+...+... |++++|.+.+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777764200 1333344555666666666 6666666666665542
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 038748 272 -GC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----GF-RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN- 342 (482)
Q Consensus 272 -~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 342 (482)
+. +....++..+...+...|++++|...+.++++.. +. ......+..+...|...|++++|+.+|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 1123344455555555555555555555554211 11 112233444444455555555555555444432
Q ss_pred -----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 343 -----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 343 -----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+..| ...++..+...+...|++++|..+++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 112334444444444444444444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-13 Score=118.39 Aligned_cols=172 Identities=15% Similarity=0.033 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCC-------
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQY-------GCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGR------- 199 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 199 (482)
...++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666667777777766666552 11223344555555555666666666555543210
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCC
Q 038748 200 -IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV-----GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGC 273 (482)
Q Consensus 200 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~ 273 (482)
.+....++..+...|...|++++|...+++..... +..|.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------------------- 151 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD---------------------------------- 151 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH----------------------------------
Confidence 11123344444444555555555555554444221 11121
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----G-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
....+..+...+...|++++|.++++.+.+.. + ......++..+...|...|++++|...++++.+
T Consensus 152 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 152 --VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp --HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344455555556666666666665554210 1 111234566677777777777777777777665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=108.07 Aligned_cols=225 Identities=8% Similarity=-0.050 Sum_probs=136.5
Q ss_pred HHccCCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHHHH
Q 038748 251 LLKGCDGIYETVNSLKRMMERGC-NP----GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNMMI 320 (482)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li 320 (482)
+... |++++|+..|++..+... .+ ...++..+...|...|+++.|...+.+..+...-.+ ...+++.+.
T Consensus 111 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 111 EFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445 777777777776654310 01 134566666677777777777777766542211111 134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccChhhHHHHH
Q 038748 321 SLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVK-----NENVLNHENCRAAV 390 (482)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li 390 (482)
..|...|++++|.+.|++..+. |..+ ...++..+...|...|++++|...+++..+ .... ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 7777777777777777766542 1111 123566667777777888888888777766 3333 255667777
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIENHC----SDLSETGNLLVAGLCDMHM---LPEAVKYAKGMAEKGIQVT-PFALSKLKQI 462 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~ 462 (482)
.+|.+.|++++|.+.+++..+..- ......+..+...|...|+ +++|+.++++ .+..++ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 778888888888888877765321 1112344555555666666 6666666665 222222 2455667777
Q ss_pred HHHhccHHHHHHHHHHHh
Q 038748 463 LIKARKEAVYEELLKKCK 480 (482)
Q Consensus 463 ~~~~g~~~~a~~~~~~m~ 480 (482)
|.+.|++++|.+.+++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=99.55 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+..+|..+...|...|++++|++.|++..+... -+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 455666666667777777777777776666542 2455666666666666666666666666544445555666666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
+...++++.|...+.+... ..|++..++..+...+... |++++|++.|++..+.. +.+..++..+..++.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 6666666666666666553 2455555566666666666 66666666666655542 22344555555555556666
Q ss_pred hHHHHHHHHhh
Q 038748 294 RGAEFIWGAMV 304 (482)
Q Consensus 294 ~~a~~~~~~~~ 304 (482)
++|.+.|++.+
T Consensus 158 ~~A~~~~~~al 168 (184)
T 3vtx_A 158 DEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-12 Score=118.98 Aligned_cols=212 Identities=8% Similarity=-0.063 Sum_probs=138.8
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHH
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV-ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNS 264 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 264 (482)
++++.+.++......+.+...+..+..+|...|++ ++|+..|++..+. .|++..+|..+...+... |++++|++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~-g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKK-GDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 45555556655554555677777777777777777 7777777777643 566677777777777777 777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhc--------C
Q 038748 265 LKRMMERGCNPGMTFFKLAFEECLTG---------QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYS--------N 327 (482)
Q Consensus 265 ~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~ 327 (482)
|++..+.. |+...+..+...+... |++++|.+.|++.++.. +.+...|..+..+|... |
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 77776643 5556666677777777 77777777777776321 23466667777777666 6
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHH
Q 038748 328 ETGAAMKLLDEMVYNGAF--PDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKF 405 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 405 (482)
++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776664210 25566666666777777777777777776664322 344555666666666666666654
Q ss_pred H
Q 038748 406 W 406 (482)
Q Consensus 406 ~ 406 (482)
+
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-10 Score=104.23 Aligned_cols=232 Identities=9% Similarity=-0.076 Sum_probs=155.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CC-CC-CHHHH
Q 038748 210 LLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GC-NP-GMTFF 280 (482)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~ 280 (482)
....+...|++++|...|++......-.++ ...++..+...+... |+++.|+..+++..+. +. .+ ...++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777776532111121 234566667777777 7788777777766542 11 11 24566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRP----DTHMYNMMISLYCYSNETGAAMKLLDEMVY-----NGAFPDIQTY 351 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 351 (482)
..+...|...|++++|.+.|.+.++...-.. ...++..+...|...|++++|+..|++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 7777888888888888888887753211111 234677788888899999999999988876 3222 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----ccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCCh-hhHHH
Q 038748 352 NILFEFLVKGRKLWEASGLFNEMVKNEN----VLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLS-ETGNL 423 (482)
Q Consensus 352 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~ 423 (482)
..+...+.+.|++++|..++++..+... ......+..+...|...++ +.+|...++. .+..|+. ..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 7888889999999999999998876421 1122345566667777888 6666666665 2332332 45667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-11 Score=96.87 Aligned_cols=163 Identities=10% Similarity=-0.044 Sum_probs=86.2
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+...|++++|...|+++....+.+..++..+...+...|++++|...++.+.+... .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444555555555566666655555555444555555555555555566666555555554421 234445555555555
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.|++++|.+.++.+....+.+...+..+...+...|++++|...+++.... .|++..++..+...+... |++++|.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~~~~~A~ 164 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQM-GRHEEAL 164 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHc-CCHHHHH
Confidence 555555555555543333444555555555555555555555555555432 343444555555555555 5555555
Q ss_pred HHHHHHHH
Q 038748 263 NSLKRMME 270 (482)
Q Consensus 263 ~~~~~m~~ 270 (482)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-10 Score=101.99 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhc---CCC--CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC--C--CHH
Q 038748 208 AILLEGWEKERDVANAKKTFGEMVIEV---GWD--PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN--P--GMT 278 (482)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~ 278 (482)
..+...+...|++++|...+++..... +.. |.....+..+...+... |++++|...+++....... + ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344444455555555555554443211 111 11122333344444444 5555555555544432110 0 122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---Hhh
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYN-----MMISLYCYSNETGAAMKLLDEMVYNGAFPD---IQT 350 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~ 350 (482)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 344444455555555555555555431111000001111 122234455555555555555443221110 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccCh-hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKN----ENVLNH-ENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|.+.+++..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555556666666655554432 111111 134444555556666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-10 Score=102.67 Aligned_cols=292 Identities=11% Similarity=-0.013 Sum_probs=190.9
Q ss_pred HHHHHhcCChHhHHHHHHHhhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHH
Q 038748 177 LSAICRDGKTIDAWQFLRVVDGRIKPD-N----DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYL 248 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~ 248 (482)
...+...|++++|...+++.....+++ . .+++.+...+...|++++|...+++......-.++ ...++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344456677777777766643222222 1 24566667777888888888888876642111111 122355667
Q ss_pred HHHHccCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhccc---CCCCCHHHHHH
Q 038748 249 ITLLKGCDGIYETVNSLKRMMER----GCN--P-GMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNM 318 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 318 (482)
..+... |++++|.+.+++..+. +.. | ....+..+...+...|++++|...+.+.++.. +......++..
T Consensus 101 ~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 101 EILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 777788 9999999999987653 222 2 24456667888999999999999999876322 11112456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCccC---hhhHHHH
Q 038748 319 MISLYCYSNETGAAMKLLDEMVYNGAFPDI-QTYN-----ILFEFLVKGRKLWEASGLFNEMVKNENVLN---HENCRAA 389 (482)
Q Consensus 319 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 389 (482)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|..+++........+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 888999999999999999988753211111 1121 233447789999999999998876432211 2245677
Q ss_pred HHHHhcCCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC----CCHHHH
Q 038748 390 VRVYMDSDDPYVAIKFWKYMIEN----HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQ----VTPFAL 456 (482)
Q Consensus 390 i~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~~ 456 (482)
...+...|++++|.+.++..... |..++. ..+..+..++...|+.++|...+++.... |.. ......
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~ 339 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 339 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHH
Confidence 88899999999999999987642 222222 25666778888999999999999887543 321 112234
Q ss_pred HHHHHHHHHhccH
Q 038748 457 SKLKQILIKARKE 469 (482)
Q Consensus 457 ~~l~~~~~~~g~~ 469 (482)
..++..+......
T Consensus 340 ~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 340 AQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCC
Confidence 4555566555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-11 Score=117.30 Aligned_cols=166 Identities=10% Similarity=0.000 Sum_probs=150.8
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
+..+|+.+...+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4688999999999999999999999999999888899999999999999999999999999998753 367889999999
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChH
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 259 (482)
+...|++++|++.|++..+-.+-+...|+.+..+|.+.|++++|+..|++..+ +.|++..++..+...+... |+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhc-ccHH
Confidence 99999999999999996654566889999999999999999999999999974 4888899999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 038748 260 ETVNSLKRMME 270 (482)
Q Consensus 260 ~a~~~~~~m~~ 270 (482)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-10 Score=91.42 Aligned_cols=161 Identities=13% Similarity=0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+..+...+...|++++|...++.+....+.+..++..+...+...|++++|...++++... .|++...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3344444445555555555554444333344445555555555555555555555554422 3333444444444444
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 253 KGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAA 332 (482)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 332 (482)
.. |++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QV-QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred Hh-cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 44 44555554444444331 1233334444444444444444444444443111 12233444444444444444444
Q ss_pred HHHHHHHH
Q 038748 333 MKLLDEMV 340 (482)
Q Consensus 333 ~~~~~~m~ 340 (482)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=103.28 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI-----G-FRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN------GA 344 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~ 344 (482)
..++..+...+...|++++|...+.++++.. + .+....++..+...|...|++++|...|.+..+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566666666666666666666654221 1 1223445666677777777777777777666553 11
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----
Q 038748 345 -FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKN------ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN---- 412 (482)
Q Consensus 345 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 412 (482)
......+..+...+...|++++|..++++..+. +..| ...++..+..+|...|++++|.+.++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 112445666667777777777777777776654 1112 3455667777777788888888877777642
Q ss_pred ---CCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHH--H-cC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 413 ---HCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMA--E-KG--IQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 413 ---~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
...+.. ..|..+...+...+....+..+..... + .+ ......++..+..+|.+.|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222 233333333333333332222211110 1 11 112235677788888888888888888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.3e-10 Score=94.66 Aligned_cols=193 Identities=9% Similarity=-0.009 Sum_probs=144.0
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV-LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
.|+..|......+...|++++|+..|++..+..+ ++...+..+..++...|++++|++.|+...+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 4667888888888999999999999999888887 7777777788889999999999999999887643 2566788888
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--ChhhHHHHH
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDN-------DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPD--NVPAYDSYL 248 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~~l~ 248 (482)
.++...|++++|.+.|++.....+.+. .+|..+...+...|++++|+..|++.. .+.|+ +..++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 889999999999999988655445555 557888888888999999999999886 45786 667777777
Q ss_pred HHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 249 ITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..+... |+ ..++++...+ ..+...|.... ....+.+++|...++...
T Consensus 161 ~~~~~~-~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 161 VLFYNN-GA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-HH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 777655 33 3344444432 22233333332 233466788888888886
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=103.31 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc------C
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMVIEV-----GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER------G 272 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~------~ 272 (482)
..++..+...|...|++++|...+++..... +-.|....++..+...+... |++++|++.+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCC
Confidence 4455556666666666666666666554321 22233344555555555555 6666666666555432 0
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 273 -CNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR------IGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 273 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
.+....++..+...+...|++++|...+.++++. ...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112344455555555556666665555555421 00111234455555555566666666666555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-10 Score=109.19 Aligned_cols=165 Identities=11% Similarity=0.017 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+..+|+.+...+.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+-.+-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 568899999999999999999999999998653 3578899999999999999999999999665456678999999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
|.+.|++++|++.|++..+ +.|++..+|+.+...+... |++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999974 4888899999999999999 99999999999998864 23577889999999999999
Q ss_pred hHHHHHHHHhh
Q 038748 294 RGAEFIWGAMV 304 (482)
Q Consensus 294 ~~a~~~~~~~~ 304 (482)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-09 Score=91.07 Aligned_cols=194 Identities=9% Similarity=-0.097 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 038748 275 PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNIL 354 (482)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 354 (482)
.|...+......+...|++++|...|...+ +..-.++...+..+..++...|++++|+..|++..+.... +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 356778888888999999999999999887 3332267777777888899999999999999998886332 45678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC---hhhHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNENVLNH-------ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDL---SETGNLL 424 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l 424 (482)
...+...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+...+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88899999999999999998875432 33 45777788888899999999999998874 455 3566667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 425 VAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 67665443 344555554432 2344444433 3456778999998887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=81.90 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+...|++++|..+|+++.+.++.+...+..+...+...|++++|...++++.+.+. .+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 4556666666677777777777776666555666666666666677777777777776665532 245556666666666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|++++|.++++.+....+.+..++..+..++.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 6666666666666544334455666666666666666666666666655
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-09 Score=92.37 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChh---
Q 038748 314 HMYNMMISLYCYS-NETGAAMKLLDEMVYNGAFP-D----IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHE--- 384 (482)
Q Consensus 314 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 384 (482)
.+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3455666667774 77777777777665521000 1 2456667777777888888888888777754332211
Q ss_pred ---hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH--hcCChhHHHHHHHHHH
Q 038748 385 ---NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS------ETGNLLVAGLC--DMHMLPEAVKYAKGMA 445 (482)
Q Consensus 385 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 445 (482)
.|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4566667777788888888888776642 2321 12334445554 3466777777776653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-09 Score=92.76 Aligned_cols=206 Identities=9% Similarity=-0.077 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRPD-THMYNMMISLYCYSNETGAA 332 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~~~~~~a 332 (482)
++++|...|++. ...|...|++++|...|.+.++- .|-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 588888888776 34577889999999999877632 121122 56888899999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcc-C----hhhHHHHHHHHhcCCChHH
Q 038748 333 MKLLDEMVYN----GAFP-DIQTYNILFEFLVKG-RKLWEASGLFNEMVKNENVL-N----HENCRAAVRVYMDSDDPYV 401 (482)
Q Consensus 333 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~ 401 (482)
+..|++..+. |-.. -..+++.+...|... |++++|...|++..+..... + ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653 1110 135678888899996 99999999999988642111 1 3468888999999999999
Q ss_pred HHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--Hhc
Q 038748 402 AIKFWKYMIENHCSDLSE------TGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTP------FALSKLKQILI--KAR 467 (482)
Q Consensus 402 a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g 467 (482)
|.+.|++..+........ .|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999999854322211 46777788999999999999999986533 321 23444555554 345
Q ss_pred cHHHHHHHHHHH
Q 038748 468 KEAVYEELLKKC 479 (482)
Q Consensus 468 ~~~~a~~~~~~m 479 (482)
++++|+..++++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 688888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-09 Score=107.88 Aligned_cols=153 Identities=10% Similarity=-0.075 Sum_probs=74.7
Q ss_pred hhCCCcHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 112 GKNCLFDAMWDAIKSMK--------KENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
...|++++|++.|++.. +..+.+...+..+..++...|++++|++.|++..+... .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 44455555555555554 33333444455555555555555555555555544321 2344444455555555
Q ss_pred CChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHH
Q 038748 184 GKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 184 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 263 (482)
|++++|.+.|++.....+.+...|..+..+|.+.|++++ +..|++..+ +.|++..+|..+...+... |++++|++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~-g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAE-GDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHc-CCHHHHHH
Confidence 555555555555333233344455555555555555555 555555442 2444444555555555555 55555555
Q ss_pred HHHHHHH
Q 038748 264 SLKRMME 270 (482)
Q Consensus 264 ~~~~m~~ 270 (482)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 5555444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=89.18 Aligned_cols=100 Identities=10% Similarity=-0.077 Sum_probs=62.7
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC-CC-CHhhH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGC-KH-DVFAL 173 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~ 173 (482)
.+...+-.+...+.+.|++++|+..|+++....+.+ ..++..+..++.+.|++++|+..|+...+... .| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345566666666677777777777777777665544 56666677777777777777777777766422 11 13345
Q ss_pred HHHHHHHHh--------cCChHhHHHHHHHhhC
Q 038748 174 NSLLSAICR--------DGKTIDAWQFLRVVDG 198 (482)
Q Consensus 174 ~~ll~~~~~--------~g~~~~a~~~~~~~~~ 198 (482)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 555556666 6666666666666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.9e-09 Score=89.87 Aligned_cols=216 Identities=7% Similarity=-0.020 Sum_probs=126.6
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG---MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD 312 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 312 (482)
..|++...+......+... |++++|+..|+++.+.. +-+ ...+..+..++...|++++|...|+..++...-.|.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 3555566666667777777 77777777777776643 112 455666667777777777777777777633211222
Q ss_pred -HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 038748 313 -THMYNMMISLYCY--------SNETGAAMKLLDEMVYNGAFPDIQ-TYNILFEFLVKGRKLWEASGLFNEMVKNENVLN 382 (482)
Q Consensus 313 -~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 382 (482)
...+..+..++.. .|++++|+..|+++.+. .|+.. ....+. .+..+... .
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----H
Confidence 3445556666666 67777777777776664 23221 111110 00000000 0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCC
Q 038748 383 HENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD--LSETGNLLVAGLCDM----------HMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 383 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~ 450 (482)
...+..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+....
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 0113566778888999999999999988753211 224566777777755 8889999999998876522
Q ss_pred CC--HHHHHHHHHHHHHhccHHHHH
Q 038748 451 VT--PFALSKLKQILIKARKEAVYE 473 (482)
Q Consensus 451 ~~--~~~~~~l~~~~~~~g~~~~a~ 473 (482)
.. ......+...+.+.|+++.+.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 234444555555556555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-08 Score=77.90 Aligned_cols=129 Identities=14% Similarity=0.142 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
+|..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|..+++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 456667777777777788777777766542 3556666677777777777777777777554344556667777777777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.|++++|...++++... .|++...+..+...+... |++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHc
Confidence 77777777777776643 344455666666666666 777777777666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-07 Score=78.13 Aligned_cols=221 Identities=9% Similarity=-0.031 Sum_probs=144.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----Hhc---CC
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD--RVKDAITTFDVMEQYGCKHDVFALNSLLSAI----CRD---GK 185 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~ 185 (482)
...++|+++++.+...++....+|+.--..+...| +++++++.++.+...+.+ +..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34456777777777777666667776666666666 777777777777765432 444455444444 334 56
Q ss_pred hHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC------
Q 038748 186 TIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA--NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG------ 257 (482)
Q Consensus 186 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------ 257 (482)
+++++++++.+....+.|..+|+.-.-++.+.|.++ ++++.++.+... .|.+..+|+.-...+... ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l-~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSK-KHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSS-GGGCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhc-cccchhhh
Confidence 777777777766656667777777777777777777 777777777643 666777777666666555 55
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhccc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRG-AEFIWGAMVGRI-GFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
++++++.+++++... +-|...|+-.-..+.+.|+... +..+...+.+.. .-..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 677777777777653 3456666666666666666433 445555554211 1134567777777788777888888888
Q ss_pred HHHHHH
Q 038748 336 LDEMVY 341 (482)
Q Consensus 336 ~~~m~~ 341 (482)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=84.78 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=63.7
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
+..++.+.|++++|...|++.....+.+...+..+..+|...|++++|...|++... +.|++..++..+...+...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~- 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLT- 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHH-
Confidence 555666666666666666664443445566666666666666666666666666653 2565666666655555443
Q ss_pred CC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 256 DG--IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 256 ~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+. ...+...++.... ..|....+.....++...|++++|...|++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 32 2223333333221 11222222233334444556666666666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-07 Score=82.86 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
++..++..+..++...|++++|++++.+.... +-.+++...+...+..+++. |+.+.|.+.+++|.+
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 33333344444555555555555555444311 11113344444444444444 444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-07 Score=80.24 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC-----CHHHHHH
Q 038748 245 DSYLITLLKGCDGIYETVNSLKRMMERGC-NPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP-----DTHMYNM 318 (482)
Q Consensus 245 ~~l~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 318 (482)
..+...+... |++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|. +. .| +..+...
T Consensus 104 ~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 104 YLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CccccccchHHHHH
Confidence 3444444444 555555555555443331 1133444445555555555555555555553 21 33 1233333
Q ss_pred HHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 319 MISLYC--YSN--ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMV 375 (482)
Q Consensus 319 li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 375 (482)
|+.++. ..| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333311 112 455555555555443 2222222222234455555555555555433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=90.45 Aligned_cols=161 Identities=10% Similarity=-0.048 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHH-HHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDT-YAILLEGW 214 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~ 214 (482)
..+..+...+...|++++|...|+...+... -+...+..+...+...|++++|...++.+... .|+... .......+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHH
Confidence 3344444444555555555555555544321 13344444555555555555555555543322 122221 11122223
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCN-PGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~ 293 (482)
...++.+.|...+++.... .|++...+..+...+... |++++|++.|.++.+.... .+...+..++..+...|+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4444455555555554422 454555555555555555 5555555555555543211 1134455555555555555
Q ss_pred hHHHHHHHH
Q 038748 294 RGAEFIWGA 302 (482)
Q Consensus 294 ~~a~~~~~~ 302 (482)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-09 Score=103.44 Aligned_cols=185 Identities=10% Similarity=-0.083 Sum_probs=150.2
Q ss_pred HhhCChhhHHHHHHHHH--------hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 146 VVADRVKDAITTFDVME--------QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
...|++++|++.+++.. +.. ..+...+..+..++...|++++|.+.|++.....+.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999998 432 235677888999999999999999999997665677889999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAE 297 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 297 (482)
|++++|...|++..+ +.|++...+..+...+... |++++ ++.|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999975 4788888999999999999 99999 99999998864 335778889999999999999999
Q ss_pred HHHHHhhcccCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Q 038748 298 FIWGAMVGRIGFRPD-THMYNMMISLYCYSNE--------TGAAMKLLDEMV 340 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~--------~~~a~~~~~~m~ 340 (482)
+.|++.+ ...|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 555 ~~~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 555 RTLDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999886 33565 5667777777755443 555665555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.8e-08 Score=83.66 Aligned_cols=183 Identities=8% Similarity=-0.052 Sum_probs=96.6
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC-CH-hhHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKH-DV-FALNS 175 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~ 175 (482)
...+..+...+...|++++|+..|+++....+.+ ...+..+..++.+.|++++|+..|+.+.+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455555666777777777777777777665422 3566667777777777777777777776653221 11 12333
Q ss_pred HHHHHHh------------------cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 176 LLSAICR------------------DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 176 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
+..++.. .|++++|...|+.+....+-+...+....... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH-------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH-------
Confidence 3333332 34555555555554443333322221111000 000000
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP--GMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
......+...+... |++++|+..|+++.+..... ....+..+..++.+.|+.++|.+.++.+.
T Consensus 147 ---~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTER-GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp ---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 00112344555566 77777777777766642111 12456666677777777777777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.6e-09 Score=83.93 Aligned_cols=160 Identities=7% Similarity=-0.078 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HH
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA-IC 181 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 181 (482)
.+......+...|++++|...|++..+..+.+...+..+...+...|++++|+..|+...... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555566666667777766666666655566666666666666666766666666665532 233222221111 11
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCChH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGIY 259 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~ 259 (482)
..+....|...++......+.+...+..+..++...|++++|...|+++.. ..|+. ...+..+...+... |+.+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~-g~~~ 161 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSAL-GQGN 161 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHH-CSSC
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHh-CCCC
Confidence 111222344444443332333455555555555555555555555555542 23321 22444455555555 5555
Q ss_pred HHHHHHHHH
Q 038748 260 ETVNSLKRM 268 (482)
Q Consensus 260 ~a~~~~~~m 268 (482)
+|...|++.
T Consensus 162 ~A~~~y~~a 170 (176)
T 2r5s_A 162 AIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=7.5e-06 Score=77.99 Aligned_cols=366 Identities=9% Similarity=-0.032 Sum_probs=189.0
Q ss_pred HHHHHHHHHhh-cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC-cHHHHHHHHHHHhc---CCCCHHHHHHH
Q 038748 67 QETVEQVLKFS-YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL-FDAMWDAIKSMKKE---NVLSLATFASV 141 (482)
Q Consensus 67 ~~~~~~ll~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~~~l 141 (482)
...|...+... .++.+.+..+|+.... ..|+...|...+....+.++ .+....+|+..... ++.+...|...
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 34455555522 3666777777775544 23566677776666665552 34455566665543 23455666666
Q ss_pred HHHHH----hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 142 FSSYV----VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR---DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 142 i~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
+..+. .+++.+.+..+|+........ + +..+-..|.. ..+...+..+..+ .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~---~~~lw~~Y~~fE~~~~~~~~~~~~~~------------------~ 149 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMG-S---LSELWKDFENFELELNKITGKKIVGD------------------T 149 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-T---HHHHHHHHHHHHHHHCHHHHHHHHHH------------------H
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhh-h---HHHHHHHHHHHHHHhccccHHHHHHH------------------H
Confidence 65443 235566677777776653111 1 1111111111 1111111111111 1
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC-CC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DG-----IYETVNSLKRMMERGCNPGMTFFKLAFEECL 288 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 288 (482)
.+.+..|..+++.+... ....+...|...+..--... +- .+.+..+|+++... ++-+...|...+..+.
T Consensus 150 --~~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 150 --LPIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp --HHHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 12233344444443321 00002223433333221110 00 23456677777664 3445666777777777
Q ss_pred hcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHhhHHHHHH
Q 038748 289 TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNG---------AFP---DIQTYNILFE 356 (482)
Q Consensus 289 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~ 356 (482)
..|+++.|..++++.+.. +.+...|. .|+...+.++. ++.+.+.- ..+ ....|...+.
T Consensus 225 ~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 888888888888888632 22332222 22222111221 22222210 001 1234555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 038748 357 FLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-DDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLP 435 (482)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (482)
.+.+.+..+.|..+|+.. +.. ..+...|......-... ++++.|.++|+...+.. +-+...|...+......|+.+
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHH
Confidence 666677888899998888 321 22334443222222222 36888999998887753 223345666677677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 436 EAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 436 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.|..+|+++. -....|...+..-...|+.+.+..++++..
T Consensus 372 ~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 372 NARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888862 246677777777777788888888877765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-08 Score=97.74 Aligned_cols=161 Identities=12% Similarity=-0.056 Sum_probs=124.6
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT 157 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 157 (482)
.|+.++|.+.|+.... ..+.+...|..+...+...|++++|.+.|++..+..+.+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678899999998766 44556889999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhHHhc
Q 038748 158 FDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE---RDVANAKKTFGEMVIEV 234 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 234 (482)
|++..+... .+...+..+..++...|++++|.+.|++.....+.+...+..+..++... |++++|.+.+++....
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~- 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ- 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc-
Confidence 999988753 36788999999999999999999999997655566788999999999999 9999999999998754
Q ss_pred CCCCCChhhH
Q 038748 235 GWDPDNVPAY 244 (482)
Q Consensus 235 ~~~p~~~~~~ 244 (482)
.|++...+
T Consensus 158 --~p~~~~~~ 165 (568)
T 2vsy_A 158 --GVGAVEPF 165 (568)
T ss_dssp --TCCCSCHH
T ss_pred --CCcccChH
Confidence 45444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-09 Score=83.26 Aligned_cols=132 Identities=11% Similarity=-0.104 Sum_probs=63.3
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
..|++++|+..+.......+.+...+..+...|.+.|++++|++.|++..+... -+..+|..+..++...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344455555555554443332333444455555555555555555555555432 2444555555555555555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhHHhcCCCCCChhhHHHHH
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVANAKKT-FGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
|+....-.+-+..+|..+...|.+.|++++|... +++.. .+.|++..+|....
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al---~l~P~~~~~~~l~~ 141 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA---KLFPGSPAVYKLKE 141 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH---HHSTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HhCcCCHHHHHHHH
Confidence 5554333333455555555555555555443332 34443 22454444444333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-08 Score=82.68 Aligned_cols=165 Identities=11% Similarity=-0.012 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHhhCChhhHHHHHHHHHhcCCCCC
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFAS----------------VFSSYVVADRVKDAITTFDVMEQYGCKHD 169 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 169 (482)
.....+...|++++|+..|++.....+.+...|.. +..++.+.|++++|+..|+...+... -+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CC
Confidence 33444555666666666666666655444445555 66666677777777777777666542 25
Q ss_pred HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 170 VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD--VANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 170 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
...+..+..++...|++++|...|++.....+.+..+|..+..+|...|. .+.+...+.... ...| ....+...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTK-MQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCc-hhHHHHHH
Confidence 56666666777777777777777776554445566666666666655443 233334443332 1111 11123333
Q ss_pred HHHHHccCCChHHHHHHHHHHHHcCCCCCHH
Q 038748 248 LITLLKGCDGIYETVNSLKRMMERGCNPGMT 278 (482)
Q Consensus 248 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 278 (482)
..++... |++++|+..|++..+. .|+..
T Consensus 164 g~~~~~~-~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 164 GLSKLFT-TRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHH-HTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHh--CCCHH
Confidence 4444445 6677777777776653 35543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-07 Score=79.82 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-C-CHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCK-H-DVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
...+..+...+.+.|++++|+..|+.+.+.... + ....+..+..++.+.|++++|...|+.+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666677788889999999999888875322 1 134677778888888888888888888654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-08 Score=80.73 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-WEK 216 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 216 (482)
+..+...+...|++++|...|+...+... .+...+..+..++...|++++|...|+......+ +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 44455556666666666666666555321 2445566666666666666666666666433222 43333222111 112
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNP-GMTFFKLAFEECLTGQNLRG 295 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 295 (482)
.+....|...+++... ..|++...+..+...+... |++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2222334555555543 2555555555555555555 66666666666555543211 23345555555555555555
Q ss_pred HHHHHHHh
Q 038748 296 AEFIWGAM 303 (482)
Q Consensus 296 a~~~~~~~ 303 (482)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=83.97 Aligned_cols=160 Identities=8% Similarity=-0.072 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH-HHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL-SAI 180 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~ 180 (482)
..+..+...+...|++++|...|++.....+.+...+..+...+.+.|++++|...++...... |+........ ..+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHH
Confidence 3444444444455555555555555555444444455555555555555555555555444332 2222211111 123
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC--hhhHHHHHHHHHccCCCh
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--VPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~ 258 (482)
...++.+.|...+++.....+.+...+..+...+...|++++|...|.++... .|+. ..++..+...+... |+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~-g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL-GTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH-CTT
T ss_pred HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc-CCC
Confidence 33444444444444433333444445555555555555555555555555432 3322 33444444444444 555
Q ss_pred HHHHHHHHH
Q 038748 259 YETVNSLKR 267 (482)
Q Consensus 259 ~~a~~~~~~ 267 (482)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.1e-08 Score=86.32 Aligned_cols=26 Identities=12% Similarity=-0.128 Sum_probs=12.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
++..+...|...|++++|.+.|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-06 Score=79.41 Aligned_cols=362 Identities=8% Similarity=-0.068 Sum_probs=180.8
Q ss_pred HHHHHhhCCCCccHHHHhhhc-CCCCCHHHHHHHHHhh--cC-CchhHhHHhhhhhcCCC-CCCCHhhHHHHHHHHhh--
Q 038748 41 TLCEIIANTPSPTVEDVLDKT-LIRVSQETVEQVLKFS--YS-HPGPAVKFFRWSAYQLN-DKHSPYAWNLVVDLLGK-- 113 (482)
Q Consensus 41 ~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~ll~~~--~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 113 (482)
+.+..+.......+...+.+. ...|+.......++.. .+ ..+....+|+.+....| ...+...|...+..+..
T Consensus 20 r~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 20 HARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred HHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 344555443333344444432 2346888777777722 22 34667788887776444 34578889999987653
Q ss_pred --CCCcHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHH
Q 038748 114 --NCLFDAMWDAIKSMKKENVLSL-ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAW 190 (482)
Q Consensus 114 --~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 190 (482)
+++.+.+.++|++.......+. ..|..... +........+..++.+.. +.+..|.
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar 157 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDTL---------------------PIFQSSF 157 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHH
Confidence 4678899999999998533332 22222222 111122222222222111 1122222
Q ss_pred HHHHHhhCCC-CCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 191 QFLRVVDGRI-KPDNDTYAILLEGWEKER--D-----VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.+++.+.... ..+...|...+..-...+ - .+.+..+|+++... .|.....|...+...... |+.+.|.
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~-~~~~~ar 233 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGI-GQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 2222221100 012233433333321110 0 22344556555532 233344555555555555 6666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---cC-----C---CCCHHHHHHHHHHHHhcCCHHH
Q 038748 263 NSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGR---IG-----F---RPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 263 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~-----~---~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.+|++.... +.+...+. .|......++. ++.+.+. .. . .....+|...+....+.++.+.
T Consensus 234 ~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 234 KVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 666666655 22221111 11111111111 1111100 00 0 0112456666666666777888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVK-GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 410 (482)
|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.... +...+...++...+.|+.+.|..+|+.+.
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887 321 1233333322221112 23688888888887765322 33445566776677788888888888862
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 411 ENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.....|...+..-...|+.+.+.++++++.
T Consensus 382 -----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 382 -----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234667777766667788888888777765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-07 Score=77.45 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 038748 260 ETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSN----ETGAAMKL 335 (482)
Q Consensus 260 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 335 (482)
+|++.|++..+.| +...+..+...|...+++++|.+.|+... +.| +...+..|-..|.. + ++++|+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 55666667777777778888888887775 333 45666666666666 5 78888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCc-cChhhHHHHHHHHhc----CCChHHHHHHH
Q 038748 336 LDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENV-LNHENCRAAVRVYMD----SDDPYVAIKFW 406 (482)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 406 (482)
|++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|.+.|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88877754 44566666666665 67888888888888776532 125566677777776 67888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 038748 407 KYMIENHCSDLSETGNLLVAGLCDM-H-----MLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~ 449 (482)
+...+. ..+...+..|...|... | ++++|..+|++..+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888775 22334566666666543 2 78888888888877774
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-06 Score=75.39 Aligned_cols=220 Identities=6% Similarity=-0.053 Sum_probs=177.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCC--CcHHHHHHHHHHHhcCCCCHHHHHHHHHHH----Hhh---
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC--LFDAMWDAIKSMKKENVLSLATFASVFSSY----VVA--- 148 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 148 (482)
....++|++.++.+.. -.+-+..+|+.--..+...| ++++++++++.+...++-+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3455789999988776 44455677898888888888 999999999999999987777777665555 555
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH--hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------H
Q 038748 149 DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI--DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD------V 220 (482)
Q Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 220 (482)
+++++++++++.+.+... -+-.+|+.-..++.+.|.++ +++++++.+....+.|...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 789999999999998764 37788888888888889888 99999999877677889999888777777776 8
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI-YETVNSLKRMMERG--CNPGMTFFKLAFEECLTGQNLRGAE 297 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 297 (482)
+++++.++.+... .|.+..+|+-.-..+.+. |+. +++..+..++...+ -+.+...+..+...+.+.|+.++|.
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERF-DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHT-TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhc-CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999988754 888999999888888777 664 44556777665432 2346788889999999999999999
Q ss_pred HHHHHhh
Q 038748 298 FIWGAMV 304 (482)
Q Consensus 298 ~~~~~~~ 304 (482)
++++.+.
T Consensus 279 ~~~~~l~ 285 (306)
T 3dra_A 279 TVYDLLK 285 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-08 Score=78.65 Aligned_cols=140 Identities=8% Similarity=0.002 Sum_probs=116.0
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
..|+.+.|+..+..... ..+-+...+-.+...|.+.|++++|++.|++..+..+.+..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 45677888888887655 3334566778889999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHH-HHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 157 TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQF-LRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.|+...+... -+...+..+...+.+.|++++|.+. ++...+-.+.+..+|......+...|+
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999998753 3678899999999999999877664 576555456678888888877777664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-06 Score=72.57 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-ChHhHHHH
Q 038748 116 LFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD-G-KTIDAWQF 192 (482)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~ 192 (482)
..++|+++++.+...++.+..+|+.--..+...| .++++++.++.+.....+ +..+|+.--.++... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3345555555555555545555554444444444 355555555555544322 344444444444443 4 45555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC-------
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEKERDVA--------NAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG------- 257 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~------- 257 (482)
++.+....+.|..+|+.-.-++.+.|.++ ++++.++++.+. .|.+..+|+.....+... ++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l-~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSR-PGAETSSRS 223 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTS-TTCCCCHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhc-cccccchHH
Confidence 55554444455555554444444444443 556666665533 555555665555555544 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHhhccc----CCCCCH
Q 038748 258 IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL--------------------RGAEFIWGAMVGRI----GFRPDT 313 (482)
Q Consensus 258 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~----~~~~~~ 313 (482)
++++++.++++.... +-|...|+-+-..+.+.|+. ........++.... .-.++.
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 455555555555532 22444444444444433332 11222222221110 013456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038748 314 HMYNMMISLYCYSNETGAAMKLLDEMVYN 342 (482)
Q Consensus 314 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 342 (482)
.....|++.|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 66777777777777777777777777543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=93.15 Aligned_cols=155 Identities=7% Similarity=-0.040 Sum_probs=117.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.|++++|.+.|++..+..+.+...|..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999999988888889999999999999999999999999988653 36788899999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC--CChHHHHHHHHHHHHc
Q 038748 194 RVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC--DGIYETVNSLKRMMER 271 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~m~~~ 271 (482)
++.....+.+...+..+..+|.+.|++++|.+.|++..+. .|++..++..+...+.... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9976555667889999999999999999999999998754 6777778877777776653 7899999999998876
Q ss_pred C
Q 038748 272 G 272 (482)
Q Consensus 272 ~ 272 (482)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-07 Score=83.47 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=112.9
Q ss_pred hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTF 227 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (482)
.|++++|.+++++..+... .. + +...++++.|...|... ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 4667777777776665311 11 0 11146677776666543 34666777888887777
Q ss_pred HHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 038748 228 GEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNP-GMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 228 ~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
.+...- .+-.+....+|+.+...+... |++++|+..|++..+. |-.. -..++..+...|.. |++++|...
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766532 111111133566666666666 7777777777765442 1111 12455556666666 777777777
Q ss_pred HHHhhcccCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHH
Q 038748 300 WGAMVGRIGFRP----DTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFPD-IQTYNILFEFLVKGRKLWEASGL 370 (482)
Q Consensus 300 ~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 370 (482)
|++.++...-.. ...+++.+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 776652110000 1345666667777777777777777666542 11111 12344444555566777777777
Q ss_pred HHHHH
Q 038748 371 FNEMV 375 (482)
Q Consensus 371 ~~~~~ 375 (482)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77766
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.3e-07 Score=78.42 Aligned_cols=163 Identities=9% Similarity=-0.019 Sum_probs=101.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHH
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDT----HMYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNI 353 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 353 (482)
.+..+...|++++|..+++...+.....++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677778888888877775332222332 12334555566667788888888777763222 12 225677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKN-----ENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGN 422 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 422 (482)
+...|...|++++|..+|+++.+. +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777888888888887777631 1111 2235667777777888888888877776532 22222 35667
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH
Q 038748 423 LLVAGLCDMHM-LPEAVKYAKGMA 445 (482)
Q Consensus 423 ~li~~~~~~g~-~~~A~~~~~~m~ 445 (482)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77777777774 577777777664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-06 Score=77.29 Aligned_cols=163 Identities=9% Similarity=-0.035 Sum_probs=102.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-CC----HhhHH
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLA------TFASVFSSYVVADRVKDAITTFDVMEQYGCK-HD----VFALN 174 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 174 (482)
..+..+...|++++|..++++.......+.. .+..+...+...|++++|+..|++..+.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466777888888888888887775432211 2334556666667888888888887763222 22 23577
Q ss_pred HHHHHHHhcCChHhHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCChhhH
Q 038748 175 SLLSAICRDGKTIDAWQFLRVVDG------RIKP-DNDTYAILLEGWEKERDVANAKKTFGEMVIE---VGWDPDNVPAY 244 (482)
Q Consensus 175 ~ll~~~~~~g~~~~a~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~ 244 (482)
.+..+|...|++++|...|++... ...+ ...++..+..+|.+.|++++|...+++...- .+..+.-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777788888888888887777532 1111 2336677777788888888888777766532 12222224456
Q ss_pred HHHHHHHHccCC-ChHHHHHHHHHHH
Q 038748 245 DSYLITLLKGCD-GIYETVNSLKRMM 269 (482)
Q Consensus 245 ~~l~~~~~~~~~-~~~~a~~~~~~m~ 269 (482)
..+..++... | .+++|.+.+++..
T Consensus 240 ~~lg~~~~~~-g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKL-EYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 6666666666 6 3477777766654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-06 Score=72.90 Aligned_cols=176 Identities=10% Similarity=-0.047 Sum_probs=121.3
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC----ChhhHHHHH
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD----RVKDAITTF 158 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 158 (482)
+|+..|...... -++.++..+...|...+++++|++.|++..+.+ +..++..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466666655552 467778888888888888888888888887765 45566667777766 5 788888888
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHh----cCChHhHHHHHHHhhCCCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 038748 159 DVMEQYGCKHDVFALNSLLSAICR----DGKTIDAWQFLRVVDGRIKP--DNDTYAILLEGWEK----ERDVANAKKTFG 228 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~~~ 228 (482)
+...+.| +...+..|...|.. .+++++|.++|++....... +...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 55667777777766 67888888888875542221 26677777777777 777888888888
Q ss_pred HhHHhcCCCCCChhhHHHHHHHHHccCC-----ChHHHHHHHHHHHHcC
Q 038748 229 EMVIEVGWDPDNVPAYDSYLITLLKGCD-----GIYETVNSLKRMMERG 272 (482)
Q Consensus 229 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~~~a~~~~~~m~~~~ 272 (482)
+.... |.+..++..+...+....| ++++|..+|+...+.|
T Consensus 154 ~A~~~----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77642 2234456666666654322 7788888887777766
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-06 Score=77.45 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc---cC--hhh
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDI-----QTYNILFEFLVKGRKLWEASGLFNEMVKNENV---LN--HEN 385 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~ 385 (482)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566666666666666665553221110 11223334455566666666666666543111 11 235
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHH
Q 038748 386 CRAAVRVYMDSDDPYVAIKFWKYMIEN-HCSDL-----SETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----IQV-TPF 454 (482)
Q Consensus 386 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~ 454 (482)
++.+...|...|++++|.+.+++..+. ...|+ ..+|+.+...|...|++++|+.++++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 566666666667777776666665521 00111 1355666666666777777776666654321 111 144
Q ss_pred HHHHHHHHHHHhccHHHH-HHHHHHH
Q 038748 455 ALSKLKQILIKARKEAVY-EELLKKC 479 (482)
Q Consensus 455 ~~~~l~~~~~~~g~~~~a-~~~~~~m 479 (482)
+|..+..++.+.|++++| ...+++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 566666666666666666 5545543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.6e-06 Score=73.92 Aligned_cols=164 Identities=7% Similarity=-0.055 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC---CC--Hh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL------ATFASVFSSYVVADRVKDAITTFDVMEQYGCK---HD--VF 171 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 171 (482)
.+...+..+...|++++|.+.+++..+...... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566666677777666666555433211 12233444455556666666666665542111 11 23
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCCh
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVD---GRIKPD----NDTYAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDNV 241 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~ 241 (482)
+++.+...|...|++++|...|++.. ...+.+ ..++..+..+|.+.|++++|...+++...-. +......
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55566666666666666666665532 111111 1455566666666666666666666554210 1111112
Q ss_pred hhHHHHHHHHHccCCChHHH-HHHHHH
Q 038748 242 PAYDSYLITLLKGCDGIYET-VNSLKR 267 (482)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~a-~~~~~~ 267 (482)
.+|..+...+... |++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~-g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKL-EYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcHHHHHHHHHH
Confidence 3444445555555 555555 444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=73.81 Aligned_cols=127 Identities=10% Similarity=-0.071 Sum_probs=63.5
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.+...+...|++++|...|++.. .|+...+..+..++...|++++|.+.|+......+.+...|..+..+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 33444445555555555555442 23445555555555555555555555555433233445555555555555555
Q ss_pred HHHHHHHHHHhHHhcC-------------CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 220 VANAKKTFGEMVIEVG-------------WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~-------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
+++|...|++...... ..|....++..+...+... |++++|.+.|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHc
Confidence 5555555555543200 1111224555555555555 5666666655555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=73.83 Aligned_cols=129 Identities=11% Similarity=-0.059 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038748 278 TFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEF 357 (482)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 357 (482)
..+..+...+...|++++|...|.+.+ .|+...|..+...|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 345566677788888888888888764 5577888888888888888888888888887753 2356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcc---------------ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 358 LVKGRKLWEASGLFNEMVKNENVL---------------NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
+...|++++|...|+...+..... ....+..+..+|...|++++|.+.|+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888888888754321 1256677778888888888888888888764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-07 Score=71.67 Aligned_cols=129 Identities=9% Similarity=-0.102 Sum_probs=81.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
..|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...++...+... .+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44566666666777777777777777776666666777777777777777777777777666532 34556666666667
Q ss_pred hcCChHhHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhH
Q 038748 182 RDGKTIDAWQFLRVVDGRIKPDNDTYAI--LLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..|++++|...|++.....+.+...+.. ....+...|++++|...+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777776654433344444433 3333556666666666665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.6e-07 Score=68.34 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..+......|.+.|++++|++.|++..+... .+...|..+..++.+.|++++|++.|+....-.+.+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3455555566666666666666666655432 245556666666666666666666666544333445666666666666
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
..|++++|...|++..+ +.|++..++..+
T Consensus 93 ~~~~~~~A~~~~~~al~---l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ---VDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH---HCcCCHHHHHHH
Confidence 66666666666666653 356555544433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.4e-07 Score=67.19 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=51.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|.+.|+++....+.+..++..+...+...|++++|...|+.+.+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555555555666666666666665555544555555555555555555555555555554321 2344444455555
Q ss_pred HhcCChHhHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVV 196 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~ 196 (482)
...|++++|...|+.+
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 5555555555555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-06 Score=69.38 Aligned_cols=126 Identities=9% Similarity=-0.089 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD 430 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (482)
+..+...+...|++++|...|+...+.... +...+..+..++...|++++|.+.++...+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 334444445555555555555555443221 34445555555555555555555555555432 1233455555555556
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHhccHHHHHHHHHHH
Q 038748 431 MHMLPEAVKYAKGMAEKGIQVTPFAL--SKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
.|++++|...|++..+... .+...+ ...+..+.+.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666554432 122233 22222355556666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-07 Score=69.20 Aligned_cols=118 Identities=6% Similarity=-0.139 Sum_probs=68.8
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...+++..+... .+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 344556666666666777777777777776666555666666666666666666666666666665432 2445555555
Q ss_pred HHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 178 SAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.++...|++++|.+.|++.....+.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 566666666666666655433222333444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-07 Score=67.25 Aligned_cols=111 Identities=5% Similarity=-0.124 Sum_probs=90.8
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|......+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|+...+.+. .+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 355777788888999999999999999988888888999999999999999999999999888653 3677888899999
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
...|++++|.+.|++..+-.+.+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 99999999999998865544556666555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-07 Score=67.73 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=65.7
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+...|+++.|...|++.....+.+...+..+..++...|++++|...++...+... .+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 345555556666666666666666666655555555566666666666666666666666555431 2344555555555
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
...|++++|...|+......+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555666666555555433233344555555555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-08 Score=87.99 Aligned_cols=151 Identities=10% Similarity=-0.002 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 038748 115 CLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--------------VFALNSLLSAI 180 (482)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~ 180 (482)
+++++|...|+......+.....+..+...+.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444333333556777778888888888888888888877543221 35666667777
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 260 (482)
.+.|++++|+..|+......+.+...|..+..+|...|++++|...|++... +.|++..++..+...+... ++.++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~-~~~~~ 282 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRI-RRQLA 282 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHH-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHH-HHHHH
Confidence 7777777777777765444455666777777777777777777777776653 3565666666666666666 66666
Q ss_pred H-HHHHHHHH
Q 038748 261 T-VNSLKRMM 269 (482)
Q Consensus 261 a-~~~~~~m~ 269 (482)
+ ...|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=7e-07 Score=74.20 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 204 NDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..++..+...+...|++++|...+++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444444444455555555555444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-07 Score=78.87 Aligned_cols=98 Identities=7% Similarity=-0.131 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|+..|+...+... .+...|..+..++.+.|++++|...++......+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345566666667777777777777777766532 2556666677777777777777777777655555566777777777
Q ss_pred HHhcCCHHHHHHHHHHhHH
Q 038748 214 WEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~ 232 (482)
|...|++++|...|++...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-05 Score=70.11 Aligned_cols=221 Identities=8% Similarity=-0.075 Sum_probs=169.9
Q ss_pred hcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCC-CcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-C-Chhh
Q 038748 77 SYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNC-LFDAMWDAIKSMKKENVLSLATFASVFSSYVVA-D-RVKD 153 (482)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~ 153 (482)
..+..++|+++++.+.. -.+-+..+|+.--..+...| .+++++.+++.+...++-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 34566789999998877 45556778888888888888 599999999999999998999999888888777 7 8999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH--------hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI--------DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD------ 219 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 219 (482)
++++++.+.+... -+-.+|+.-..++.+.|.++ ++++.++++.+..+.|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999998654 37778887776666666666 88888888766667899999999888888876
Q ss_pred -HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh--------------------HHHHHHHHHHHHcC-----C
Q 038748 220 -VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI--------------------YETVNSLKRMMERG-----C 273 (482)
Q Consensus 220 -~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~ 273 (482)
++++++.+++... ..|.+..+|+-+-..+.+. |+. ....++..++...+ -
T Consensus 223 ~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 223 SLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHF-SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc-CCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6888888888874 4888888888776666665 543 23333333333321 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 274 NPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.++......++..|...|+.++|.++++.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567888889999999999999999999985
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-07 Score=75.34 Aligned_cols=158 Identities=11% Similarity=-0.046 Sum_probs=88.3
Q ss_pred HhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcC
Q 038748 288 LTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGR 362 (482)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 362 (482)
...|++++|.++++.+. . .......++..+...+...|++++|...+++..+. |..+ ....+..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35677777777554443 1 11124556667777777777777777777766551 1111 2344556666677777
Q ss_pred CHHHHHHHHHHHHhC----CCc--cChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--C-CCC--hhhHHHHHHHHHhc
Q 038748 363 KLWEASGLFNEMVKN----ENV--LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH--C-SDL--SETGNLLVAGLCDM 431 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~~ 431 (482)
++++|...+++..+. +-. .....+..+...+...|++++|.+.+++..+.. . .+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777766543 101 112345566666667777777777776665321 1 111 12345555666667
Q ss_pred CChhHHHHHHHHHHHc
Q 038748 432 HMLPEAVKYAKGMAEK 447 (482)
Q Consensus 432 g~~~~A~~~~~~m~~~ 447 (482)
|++++|...+++..+.
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777776665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-06 Score=66.18 Aligned_cols=103 Identities=7% Similarity=-0.088 Sum_probs=83.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAG 427 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 427 (482)
...+..+...+.+.|++++|...|+...+..+. +...|..+..+|...|++++|.+.|+...+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345667777888899999999999998886543 67788888899999999999999999998854 2345778888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHH
Q 038748 428 LCDMHMLPEAVKYAKGMAEKGIQVTPF 454 (482)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ 454 (482)
|...|++++|...|++..+.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999988765 5543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-06 Score=64.72 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|..+++.+....+.+..++..+..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45667777777788888888888887776542 35666777777777778888887777776544455667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLIT 250 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~ 250 (482)
...|++++|...|+++... .|++...+..+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 7778888887777777643 45444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=73.51 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=78.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCCh--Hh
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSA-ICRDGKT--ID 188 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~ 188 (482)
...|++++|...++......+.+...|..+...|...|++++|...|+...+... .+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456677777777777776666667777777777777777777777777766532 245556666666 5566776 77
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 038748 189 AWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (482)
|...|+......+.+...+..+..+|...|++++|...|++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777765444455566777777777777777777777777763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=83.99 Aligned_cols=151 Identities=11% Similarity=-0.061 Sum_probs=123.6
Q ss_pred CCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 038748 79 SHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---------------LATFASVFS 143 (482)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~ 143 (482)
++++.|.+.|+.... ..+-+...|..+...+.+.|++++|+..|++.....+.+ ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555555554332 112246788889999999999999999999999987655 589999999
Q ss_pred HHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038748 144 SYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANA 223 (482)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (482)
+|.+.|++++|+..|+...+... .+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 47788999999999999999999999997665567888999999999999999988
Q ss_pred -HHHHHHhHH
Q 038748 224 -KKTFGEMVI 232 (482)
Q Consensus 224 -~~~~~~~~~ 232 (482)
..+|..|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=79.02 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-C--------------CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCC
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCK-H--------------DVFALNSLLSAICRDGKTIDAWQFLRVVDGRI 200 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 200 (482)
..+..+...+...|++++|+..|++..+.... + ....+..+..++...|++++|...++......
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 33444445555555555555555555442111 0 01344455555555555555555555543333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 201 KPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
+.+...+..+..+|...|++++|...|++.... .|++..++..+...+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHH
Confidence 444555555555555556666665555555432 444444444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=76.52 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFL 358 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 358 (482)
.+..+...+...|++++|...|...++.. +.+...|..+..+|...|++++|+..+++..+... -+...+..+..++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 33444444455555555555555444211 12344445555555555555555555555444321 1334444445555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 038748 359 VKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~ 376 (482)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-06 Score=71.03 Aligned_cols=184 Identities=8% Similarity=-0.114 Sum_probs=91.0
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhhCChhhHHHHHHHHHhcCCCCCH---------------
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASV-------FSSYVVADRVKDAITTFDVMEQYGCKHDV--------------- 170 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 170 (482)
..++...|.+.|.++....+.....|..+ ...+.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777777777677777766 4555555555555555544433 11211
Q ss_pred -------hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCC---
Q 038748 171 -------FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDN--- 240 (482)
Q Consensus 171 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--- 240 (482)
...-.+...+...|++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+.... .|++
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccH
Confidence 1122334445555666666666655544322222 444444455566666666666653321 1111
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG--MTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
..++..+-.++... |++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 171 ~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 171 GAAGVAHGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11333444444444 555555555555443221122 1223333444444555555555555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.6e-07 Score=69.25 Aligned_cols=94 Identities=15% Similarity=0.034 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|...|++...-.+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 333344444444444444444444443321 1333334444444444444444444443322222333344444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 038748 217 ERDVANAKKTFGEMV 231 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (482)
.|++++|...|++..
T Consensus 117 lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 117 LKAPLKAKECFELVI 131 (151)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.1e-07 Score=69.99 Aligned_cols=96 Identities=13% Similarity=-0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33444444445555555555555555444321 23444444444555555555555555543332233444555555555
Q ss_pred HhcCCHHHHHHHHHHhH
Q 038748 215 EKERDVANAKKTFGEMV 231 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=74.90 Aligned_cols=126 Identities=7% Similarity=-0.168 Sum_probs=63.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHh
Q 038748 283 AFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPD--IQTYNILFEFLVK 360 (482)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~ 360 (482)
....+...|++++|.++|..+. .. .|+......+...+.+.+++++|+..|+...... .|. ...+..+-.++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~-~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAP-VA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSC-CT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3445555666666666665553 21 2332244444445556666666666665443321 110 1234445555666
Q ss_pred cCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038748 361 GRKLWEASGLFNEMVKNENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIEN 412 (482)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 412 (482)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666553322132 223344455555666666666666666653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-06 Score=65.25 Aligned_cols=115 Identities=10% Similarity=-0.052 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.+++.....+.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455666667777777777777777777666432 2556666666666677777777777766544344456666666677
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHH
Q 038748 214 WEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLL 252 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 252 (482)
+.+.|++++|...|++.... .|.+...+..+...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHH
Confidence 77777777777777666532 4444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.2e-06 Score=61.23 Aligned_cols=96 Identities=6% Similarity=-0.185 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
..+..+...+...|++++|...|+......+.+...+..+..++...|++++|...++...+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44555555666666666666666666655555555566666666666666666666666555432 23444555555555
Q ss_pred hcCChHhHHHHHHHhhC
Q 038748 182 RDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 182 ~~g~~~~a~~~~~~~~~ 198 (482)
..|++++|.+.++....
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-06 Score=63.73 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.++......+.+...+..+..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44566666666777777777777777665432 24556666666666677777777666665443344566666666666
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG 254 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 254 (482)
...|++++|...|++.... .|++...+..+...+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHH
Confidence 6677777777666666532 444444555554444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-07 Score=70.51 Aligned_cols=99 Identities=6% Similarity=-0.062 Sum_probs=85.9
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
.+...+..+...+...|++++|...|+.....++.+...|..+..+|...|++++|+..|+....... .+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 35667788888999999999999999999998888899999999999999999999999999988653 36677888899
Q ss_pred HHHhcCChHhHHHHHHHhhC
Q 038748 179 AICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~ 198 (482)
++...|++++|.+.|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-06 Score=69.17 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=100.3
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhhCCh--hhH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSS-YVVADRV--KDA 154 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~a 154 (482)
.|+.+.|...|+.... ..+.+...|..+...+...|++++|...|++.....+.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 5788899999987766 3456788999999999999999999999999999888888889999998 7889998 999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 155 ITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
...|+...+... .+...+..+..++...|++++|...|+....
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999999998753 3577888899999999999999999998654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-06 Score=63.17 Aligned_cols=92 Identities=12% Similarity=-0.071 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.|..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|+...+... .+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555555555555555432 134444445555555
Q ss_pred cCChHhHHHHHHH
Q 038748 183 DGKTIDAWQFLRV 195 (482)
Q Consensus 183 ~g~~~~a~~~~~~ 195 (482)
.|++++|...|++
T Consensus 85 ~~~~~~A~~~~~~ 97 (126)
T 3upv_A 85 VKEYASALETLDA 97 (126)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhCHHHHHHHHHH
Confidence 5555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=67.28 Aligned_cols=96 Identities=5% Similarity=-0.156 Sum_probs=65.2
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...+..+...+.+.|++++|...|+.....++.+...|..+..++...|++++|+..|+...+... .+...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 345555666667777777777777777777666677777777777777777777777777766542 2455566666677
Q ss_pred HhcCChHhHHHHHHHhh
Q 038748 181 CRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~ 197 (482)
...|++++|.+.|+...
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=66.59 Aligned_cols=99 Identities=14% Similarity=-0.086 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHH
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLE 212 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
.+...+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|...|+......+.+...+..+..
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445566666677777777777777777776542 356667777777777777777777777755444556667777777
Q ss_pred HHHhcCCHHHHHHHHHHhHH
Q 038748 213 GWEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 213 ~~~~~~~~~~a~~~~~~~~~ 232 (482)
+|...|++++|...|+....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00047 Score=61.16 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=111.1
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCC-
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERD----------VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCD- 256 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 256 (482)
+|+++++.+....+-+..+|+.--.++...+. +++++.+++.+... .|.+..+|+.-...+... +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~PKny~aW~hR~wlL~~l-~~ 123 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRL-PE 123 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHC-SS
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhcc-Cc
Confidence 55666666554444555555544333333332 34555555555432 455555555544444444 3
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 257 -GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQN-LRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMK 334 (482)
Q Consensus 257 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 334 (482)
.+++++++++.+.+.. +-|...|+.-.-.+...|. ++++.+.+..+++.. +-|...|+.....+...+....+-
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~- 199 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG- 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhccccc-
Confidence 2455555555555432 2233444443334444444 244444444444221 223334443333332221000000
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcC-----------CChHHHH
Q 038748 335 LLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDS-----------DDPYVAI 403 (482)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~ 403 (482)
..|. ...+.++++++++...+...+. |...|+.+-..+.+. +.+++++
T Consensus 200 ------~~~~--------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 200 ------PQGR--------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp ---------C--------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred ------cccc--------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 0000 0002355666666666554333 444554433333333 3467778
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 404 KFWKYMIENHCSDLSETGNLLVAGL-----CDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
+.++++.+. .||. .|..+..++ ...|..+++...+.++++.+. ....-|.-+...
T Consensus 259 ~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp-~r~~~y~d~~~~ 318 (331)
T 3dss_A 259 ESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc-chhhHHHHHHHH
Confidence 888888774 3554 444322222 235667788888888876652 223344444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=59.09 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++......+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566677777777888888888877776542 35666777777777777777777777775544445667777777777
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChhhHH
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVPAYD 245 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 245 (482)
...|++++|...+++.. ...|++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~~ 110 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGL---KHEANNPQLKE 110 (118)
T ss_dssp HHTTCHHHHHHHHHHHH---TTCTTCHHHHH
T ss_pred HHHhhHHHHHHHHHHHH---HcCCCCHHHHH
Confidence 77777777777777765 34555444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-06 Score=62.59 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCC----hhhHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENH--CSDL----SETGNL 423 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 423 (482)
.+..+...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|++.++..++.+ ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445556666667777777777666664332 45566666667777777777777776665421 1111 124556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALS 457 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (482)
+..++...|++++|++.|++..... |++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 6677777888888888888776543 5555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=72.49 Aligned_cols=151 Identities=14% Similarity=0.012 Sum_probs=105.4
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH----------------HHHHHH
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL----------------ATFASV 141 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l 141 (482)
.++++.+.+.++.... ........+..+...+...|++++|+..|++.....+.+. .+|..+
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -----CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3556666666663222 1112345677778888889999999999999887654333 788888
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVA 221 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (482)
..+|...|++++|+..++...+... .+...+..+..++...|++++|.+.|+......+.+..++..+..++...++.+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988643 467788888899999999999999999866545667788888888887777766
Q ss_pred HHH-HHHHHhH
Q 038748 222 NAK-KTFGEMV 231 (482)
Q Consensus 222 ~a~-~~~~~~~ 231 (482)
++. ..|..+.
T Consensus 174 ~~~~~~~~~~f 184 (198)
T 2fbn_A 174 KKDKLTFGGMF 184 (198)
T ss_dssp C----------
T ss_pred HHHHHHHHHHh
Confidence 665 4444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-05 Score=60.94 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWE 215 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
..|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...|+......+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566666777777777777777777776542 356667777777777777777777777755444556667777777777
Q ss_pred hcCCHHHHHHHHHHhHH
Q 038748 216 KERDVANAKKTFGEMVI 232 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~ 232 (482)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777776653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-06 Score=60.06 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=52.4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC--CHhhHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH--DVFALNSLLS 178 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 178 (482)
...|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|.+.|++..+... . +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHH
Confidence 344555555556666666666666666555555555555555555555666666666655555321 1 2444555555
Q ss_pred HHHhc-CChHhHHHHHHHhh
Q 038748 179 AICRD-GKTIDAWQFLRVVD 197 (482)
Q Consensus 179 ~~~~~-g~~~~a~~~~~~~~ 197 (482)
++... |++++|.+.++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 55555 55555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.3e-06 Score=63.00 Aligned_cols=98 Identities=11% Similarity=-0.063 Sum_probs=70.2
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
+.+...|..+...+...|++++|...|+......+.+...|..+..++...|++++|...++...+... .+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 345667777777777777777777777777777766677777777777777777777777777776542 2556667777
Q ss_pred HHHHhcCChHhHHHHHHHh
Q 038748 178 SAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~ 196 (482)
.++...|++++|...|+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 7777777777777777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-05 Score=72.11 Aligned_cols=200 Identities=8% Similarity=-0.044 Sum_probs=119.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh--------------hhHHHHHHHHHccCCChHHHHHHHHHHHHcC-CCC
Q 038748 211 LEGWEKERDVANAKKTFGEMVIEVGWDPDNV--------------PAYDSYLITLLKGCDGIYETVNSLKRMMERG-CNP 275 (482)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--------------~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~ 275 (482)
...+.+.|++++|++.|..+.+...-..+.. .++..+...|... |++++|.+.+..+.+.- ..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence 4567888999999999998886422222110 1256677777777 88888888777765421 111
Q ss_pred CHH----HHHHHHHHHHhcCChhHHHHHHHHhhcc---cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-
Q 038748 276 GMT----FFKLAFEECLTGQNLRGAEFIWGAMVGR---IGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYN--GA- 344 (482)
Q Consensus 276 ~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~- 344 (482)
+.. +.+.+-..+...|+.+.+..++...... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 1222222333457777777777765421 11122 2446667777777788888888777766542 11
Q ss_pred -CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-cc---ChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 345 -FP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKNE--N-VL---NHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 345 -~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.+ ....+..++..|...|++++|..+++...... . .| -...+..+...+...|++++|.+.|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 13456667777777888888887777765431 1 11 123455566667777778888777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=63.58 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+...|++++|+..|++..+... .+...|..+..+|...|++++|+..|+......+.+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334444444444444444444444444321 1333444444444444444444444444332223344444455555555
Q ss_pred cCCHHHHHHHHHHhH
Q 038748 217 ERDVANAKKTFGEMV 231 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (482)
.|++++|...|++..
T Consensus 92 ~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 92 MADYKGAKEAYEKGI 106 (164)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-05 Score=63.23 Aligned_cols=100 Identities=7% Similarity=-0.141 Sum_probs=88.9
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLL 177 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 177 (482)
..+...|..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|+..|+...+... .+...|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 345677888899999999999999999999999888899999999999999999999999999998753 3678899999
Q ss_pred HHHHhcCChHhHHHHHHHhhC
Q 038748 178 SAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 178 ~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.++...|++++|...|++...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-05 Score=61.31 Aligned_cols=96 Identities=15% Similarity=-0.074 Sum_probs=50.4
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSL 176 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 176 (482)
+...+..+...+...|++++|.+.|++..+..+.+ ...|..+..++...|++++|...++...+... .+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 44555555566666666666666666655554332 44555555555555555555555555554321 133444444
Q ss_pred HHHHHhcCChHhHHHHHHHh
Q 038748 177 LSAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 177 l~~~~~~g~~~~a~~~~~~~ 196 (482)
..++...|++++|...|++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=9.8e-06 Score=61.46 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCC----hhhHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC--SDL----SETGNL 423 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 423 (482)
.+..+...+...|++++|..+|++..+... .+...+..+...|...|++++|...++...+... .++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344445555555666666666655554332 1344555555566666666666666666554321 111 345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQI 462 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 462 (482)
+...|...|++++|.+.|++..+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6666777777777777777776654 455444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-05 Score=59.81 Aligned_cols=109 Identities=9% Similarity=-0.066 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHH
Q 038748 133 LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD----VFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYA 208 (482)
Q Consensus 133 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 208 (482)
.+...+..+...+...|++++|.+.|+...+.. |+ ...+..+..++...|++++|...++......+.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888888888899999999888888753 44 567777788888888888888888876544455677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 209 ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
.+..+|...|++++|...|++.... .|++...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 138 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHH
Confidence 8888888888888888888887643 5655444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.8e-05 Score=70.90 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=47.3
Q ss_pred hHHHHHHHHHccCCChHHHHHHHHHHHHc--CC--C-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccC-CC-C-C--
Q 038748 243 AYDSYLITLLKGCDGIYETVNSLKRMMER--GC--N-PGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIG-FR-P-D-- 312 (482)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~a~~~~~~m~~~--~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-~-~-- 312 (482)
++..+...+... |++++|..++++.... +. . ....++..++..|...|++++|..++........ +. | .
T Consensus 137 ~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 444444555555 5555555555544331 00 0 1133455556666666666666666655431110 11 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 313 THMYNMMISLYCYSNETGAAMKLLDEMV 340 (482)
Q Consensus 313 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 340 (482)
...+..+...+...|++++|...|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2334445555556667777666665544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=83.27 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHh
Q 038748 117 FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD--------------VFALNSLLSAICR 182 (482)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~ 182 (482)
+++|...|+......+.....|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333332223445667777777777888888888877766422111 3455555566666
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETV 262 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 262 (482)
.|++++|+..|+......+.+...|..+..+|...|++++|...|++.. .+.|++..++..+...+... ++.+++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~-~~~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKA-KEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHH-HHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666666666665443334455566666666666666666666666554 33555555555555555554 4444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0017 Score=57.60 Aligned_cols=129 Identities=6% Similarity=-0.095 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC--h
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADR----------VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK--T 186 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~ 186 (482)
+|+.+++.+...++.+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-..++...|. +
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccH
Confidence 56677777666666555555544333333222 45566666666554432 45555555555555552 5
Q ss_pred HhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH
Q 038748 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD-VANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251 (482)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 251 (482)
++++.+++.+....+.|..+|+.-.-++...|. ++++++.++.+... .|.+..+|+.....+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
Confidence 566666666554445566666655555555555 35666666666533 455555555444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=60.95 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCC--CCC----HhhHHH
Q 038748 102 YAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGC--KHD----VFALNS 175 (482)
Q Consensus 102 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 175 (482)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666666677777777777777777766666666677777777777777777777776655421 111 445555
Q ss_pred HHHHHHhcCChHhHHHHHHHhh
Q 038748 176 LLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
+..++...|++++|.+.|+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5666666666666666666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-05 Score=63.96 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=51.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSD-LSETGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQ-VTPF 454 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~ 454 (482)
++..+...|...|++++|.+.++...+. +-.+ ....+..+...+...|++++|...+++..+. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555556666666555554431 1000 0234555556666667777777666665432 111 1124
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 455 ALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 455 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45566667777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=59.65 Aligned_cols=61 Identities=7% Similarity=0.005 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
++..+...+.+.|++++|++.|++..+..+.+..+|..+..+|...|++++|++.|+...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666666666666666666665555556666666666666666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-05 Score=58.24 Aligned_cols=89 Identities=19% Similarity=0.019 Sum_probs=42.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHH
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSL---ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD---VFALNSLLSAI 180 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 180 (482)
+...+...|++++|...|+.+....+.+. .++..+..++...|++++|...|+...+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33444455555555555555555443222 34444555555555555555555555443211 1 23344444444
Q ss_pred HhcCChHhHHHHHHHh
Q 038748 181 CRDGKTIDAWQFLRVV 196 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~ 196 (482)
...|++++|...|+.+
T Consensus 87 ~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4445555555444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=58.12 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCC--CHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKP--DNDTYAILL 211 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 211 (482)
+...+..+...+...|++++|...|+...+... .+...+..+..++...|++++|.+.|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 455677788888999999999999999888653 36778888889999999999999999986654455 788899999
Q ss_pred HHHHhc-CCHHHHHHHHHHhHHh
Q 038748 212 EGWEKE-RDVANAKKTFGEMVIE 233 (482)
Q Consensus 212 ~~~~~~-~~~~~a~~~~~~~~~~ 233 (482)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999988743
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.1e-05 Score=59.39 Aligned_cols=96 Identities=6% Similarity=-0.136 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGW 214 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (482)
...+..+...+...|++++|...|+...+... .+...|..+..++...|++++|...++......+.+...+..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444444444444444444444444444321 13334444444444444444444444443322233344444444444
Q ss_pred HhcCCHHHHHHHHHHhH
Q 038748 215 EKERDVANAKKTFGEMV 231 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.2e-05 Score=58.90 Aligned_cols=94 Identities=11% Similarity=-0.089 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 103 AWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 103 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.+..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|++..+... .+...+..+..++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3455556667777777777777777777776777777777777777777777777777776542 245566667777777
Q ss_pred cCChHhHHHHHHHhh
Q 038748 183 DGKTIDAWQFLRVVD 197 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~ 197 (482)
.|++++|...|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=78.34 Aligned_cols=149 Identities=9% Similarity=-0.059 Sum_probs=116.4
Q ss_pred CchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 038748 80 HPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLS---------------LATFASVFSS 144 (482)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li~~ 144 (482)
+++.|.+.|+.... ...-....|..+...+.+.|++++|+..|++..+..+.+ ..+|..+..+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555543322 111235678888999999999999999999999876644 6889999999
Q ss_pred HHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 145 YVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
|.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 367889999999999999999999999987766667788999999999999988876
Q ss_pred H-HHHHhH
Q 038748 225 K-TFGEMV 231 (482)
Q Consensus 225 ~-~~~~~~ 231 (482)
+ .+..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-05 Score=57.35 Aligned_cols=89 Identities=7% Similarity=-0.136 Sum_probs=40.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 389 AVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 389 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+... -+...+..+..++.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3344444455555555555444432 11234444444444455555555555555444431 133444444445555555
Q ss_pred HHHHHHHHHHH
Q 038748 469 EAVYEELLKKC 479 (482)
Q Consensus 469 ~~~a~~~~~~m 479 (482)
+++|+..+++.
T Consensus 101 ~~~A~~~~~~a 111 (121)
T 1hxi_A 101 ANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=62.13 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----Cc-cChh
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAF-PD----IQTYNILFEFLVKGRKLWEASGLFNEMVKNE----NV-LNHE 384 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~ 384 (482)
++..+...|...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+++..+.. .. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555556666666655554432100 01 1245555566666677777766666655421 10 0133
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIEN----HCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
.+..+...+...|++++|.+.+++..+. +..+. ...+..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556667777777777777777766532 11111 24566677777888888888888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.1e-05 Score=56.97 Aligned_cols=95 Identities=16% Similarity=-0.024 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCH---hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCC---HHHHHHHH
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDV---FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPD---NDTYAILL 211 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 211 (482)
+..+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...|+.+....+.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344566777888888888888888775422 22 366667777888888888888888765433334 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHhHHh
Q 038748 212 EGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
.++...|++++|...|+.+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-06 Score=77.10 Aligned_cols=120 Identities=11% Similarity=-0.074 Sum_probs=88.1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+... .+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34456678888888888888888777788888888888888888888888888887643 35677888888888888888
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEG--WEKERDVANAKKTFG 228 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 228 (482)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888544333344455555555 777888888888887
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-05 Score=71.98 Aligned_cols=124 Identities=10% Similarity=-0.118 Sum_probs=74.2
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hhHHH
Q 038748 358 LVKGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ETGNL 423 (482)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~ 423 (482)
+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..++++..+. | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665542 1111 2345666777777777777777777665521 2 12222 45677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAE-----KGIQ-VT-PFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
|...|...|++++|..++++..+ .|.. |+ ..+...+..++.+.|++++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776542 2321 22 23445555667777777777777777764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-05 Score=69.66 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=56.5
Q ss_pred CHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHH
Q 038748 169 DVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYL 248 (482)
Q Consensus 169 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~ 248 (482)
+..+|..+..+|.+.|++++|++.+++.....+.+...|..+..+|...|++++|+..|++..+. .|++...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 34556666666666777777777666655544556666666777777777777777777666532 555555666555
Q ss_pred HHHHccCCChHHHHH
Q 038748 249 ITLLKGCDGIYETVN 263 (482)
Q Consensus 249 ~~~~~~~~~~~~a~~ 263 (482)
..+... ++.+++.+
T Consensus 349 ~~~~~~-~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKI-KAQKDKEK 362 (370)
T ss_dssp HHHHHH-HHHHHHHH
T ss_pred HHHHHH-HHHHHHHH
Confidence 555555 55555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=74.85 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=95.4
Q ss_pred HHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 038748 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (482)
+...+.+.|++++|.+.|++..+... .+...|..+..++.+.|++++|.+.+++..+..+.+..+|..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34456678999999999999988642 35788999999999999999999999987665667888999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHHHHHH--HHccCCChHHHHHHHH
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDSYLIT--LLKGCDGIYETVNSLK 266 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 266 (482)
++|++.|++..+. .|++..++..+..+ +... |++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQ-KAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHH-HHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHH-HHHHHHhcccc
Confidence 9999999998754 56666666666665 7777 89999999888
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=59.56 Aligned_cols=85 Identities=9% Similarity=-0.078 Sum_probs=40.9
Q ss_pred hCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 148 ADRVKDAITTFDVMEQYG--CKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 148 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++.....+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 111233444555555555555555555555433334445555555555555555555555
Q ss_pred HHHHhHH
Q 038748 226 TFGEMVI 232 (482)
Q Consensus 226 ~~~~~~~ 232 (482)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=71.33 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh------------------hHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF------------------ALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
..+..+...+.+.|++++|...|+...... |+.. .|..+..+|.+.|++++|+..++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 335555566666677777777776665532 3222 33444444444444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 198 GRIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
...+.+...|..+..+|...|++++|...|++.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222334444444444444444444444444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=9.8e-05 Score=67.52 Aligned_cols=138 Identities=11% Similarity=-0.034 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
.+..+...+.+.|++++|++.|++..+.- +... ..... +......+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666777777788888888777776520 1000 00011 11111122355678888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGA 296 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 296 (482)
.|++++|+..+++.. .+.|++..++..+..++... |++++|++.|++..+.. +-+...+..+...+...++.+++
T Consensus 286 ~g~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 286 MSDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888886 45777788888888888888 89999999998888753 23556666677777777777666
Q ss_pred HH
Q 038748 297 EF 298 (482)
Q Consensus 297 ~~ 298 (482)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00012 Score=58.14 Aligned_cols=96 Identities=9% Similarity=0.028 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHhc--------CC---------CCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 136 ATFASVFSSYVVADRVKDAITTFDVMEQY--------GC---------KHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 136 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
..+......+.+.|++++|+..|....+. .. +.+...|..+..+|.+.|++++|+..++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666667777777766666543 00 01123444444455555555555555544333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 199 RIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..+.+...|..+..+|...|++++|...|++..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 233444455555555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.2e-05 Score=68.49 Aligned_cols=131 Identities=11% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSL-----------------ATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
...+..+...+.+.|++++|...|++.....+.+. .+|..+..+|.+.|++++|+..++...+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888889999999999999887654333 3788899999999999999999999988
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHH
Q 038748 164 YGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG-WEKERDVANAKKTFGEMVI 232 (482)
Q Consensus 164 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~ 232 (482)
... .+...|..+..+|...|++++|...|+......+.+...+..+... ....+..+.+..+|..|..
T Consensus 259 ~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 259 EEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 653 3678899999999999999999999999766445566666666655 3345667778888888863
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=3e-05 Score=57.75 Aligned_cols=87 Identities=7% Similarity=-0.107 Sum_probs=58.6
Q ss_pred cCCchhHhHHhhhhhcCC-CCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHH
Q 038748 78 YSHPGPAVKFFRWSAYQL-NDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAIT 156 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 156 (482)
.|+++.|+..|+...... ..+.+...|..+...+...|++++|+..|++..+..+.+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 366677777777666521 0233456677777777777777777777777777777677777777777777777777777
Q ss_pred HHHHHHhc
Q 038748 157 TFDVMEQY 164 (482)
Q Consensus 157 ~~~~~~~~ 164 (482)
.|++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.1e-05 Score=57.71 Aligned_cols=93 Identities=10% Similarity=-0.082 Sum_probs=63.0
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-------Hhh
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-------VFA 172 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~ 172 (482)
+...|..+...+...|++++|++.|++.....+.+...+..+..++...|++++|++.|+...+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 455677777777778888888888888777777677777777778888888888888887777643 33 334
Q ss_pred HHHHHHHHHhcCChHhHHHHHH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLR 194 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~ 194 (482)
+..+..++...|+.+.|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4445555555555555544333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.8e-05 Score=59.16 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKE------------------NVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
...+......+.+.|++++|+..|.+.... .+....+|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355667777888888888888888887775 33345678888888999999999999999888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 163 QYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 163 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
+... .+...|..+..++...|++++|...|+....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 8653 3677888888899999999999998888554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00092 Score=64.74 Aligned_cols=174 Identities=8% Similarity=-0.044 Sum_probs=133.5
Q ss_pred cCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCC----------cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038748 78 YSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCL----------FDAMWDAIKSMKKENVLSLATFASVFSSYVV 147 (482)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (482)
....++|++.++.+.. -.+-+..+|+.--..+...|+ ++++++.++.+.+.++-+..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445778888887776 444556778777777766666 8899999999999888888888888888888
Q ss_pred hC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-------
Q 038748 148 AD--RVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG-KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE------- 217 (482)
Q Consensus 148 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 217 (482)
.| +++++++.++++.+... -+..+|+.-..++.+.| .++++.+.++++.+..+-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 88 66999999999988764 37788888888888888 788888888887766777888888877776663
Q ss_pred -------CCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 218 -------RDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 218 -------~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
+.++++.+.+++... +.|++..+|+-.-..+... ++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~-~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRA-EPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCC-CCC
T ss_pred ccccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcC-CCc
Confidence 456778888877764 3777777887766666655 553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0011 Score=64.11 Aligned_cols=176 Identities=5% Similarity=-0.119 Sum_probs=135.9
Q ss_pred hCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 038748 113 KNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR----------VKDAITTFDVMEQYGCKHDVFALNSLLSAICR 182 (482)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 182 (482)
.....++|++.++.+...++.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 33445688999999999998888888887777777777 89999999999987643 77888888888888
Q ss_pred cC--ChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHcc-----
Q 038748 183 DG--KTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER-DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKG----- 254 (482)
Q Consensus 183 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 254 (482)
.| ++++++++++.+.+..+.|..+|+.-..++.+.| .++++++.++++. ...|.+..+|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I---~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI---TRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT---TTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH---HHCCCCccHHHHHHHHHHhhccccc
Confidence 88 6799999999987767788999998888888888 8899999998886 55888888888877766552
Q ss_pred --------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038748 255 --------CDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNL 293 (482)
Q Consensus 255 --------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 293 (482)
.+.++++++.+++..... +-+...|.-.-..+.+.++.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 034577777777776643 23455666555555555553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00028 Score=52.03 Aligned_cols=80 Identities=5% Similarity=-0.100 Sum_probs=59.2
Q ss_pred hHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHH
Q 038748 83 PAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.|++.|+.... ..+.+...|..+...+...|++++|+..|++.....+.+...|..+..++...|++++|...|+...
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666665555 3445677777788888888888888888888887777677777788888888888888888887776
Q ss_pred hc
Q 038748 163 QY 164 (482)
Q Consensus 163 ~~ 164 (482)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0013 Score=50.33 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHH
Q 038748 327 NETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVA 402 (482)
Q Consensus 327 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a 402 (482)
+++++|+..|++..+.|. ++.. +-..|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 567888888888888763 3333 5566666777888888888888865 55667777777776 7888899
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 038748 403 IKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 449 (482)
.+.|+...+.| +...+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988888765 34566777777777 7888889988888888774
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00055 Score=53.12 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+......+...|++++|+..|++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3455566667777777777777777764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00035 Score=54.23 Aligned_cols=99 Identities=16% Similarity=-0.012 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHh----c
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDGRIKP-------DN-----DTYAILLEGWEKERDVANAKKTFGEMVIE----V 234 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 234 (482)
..+......+.+.|++++|+..|++...-.+. +. ..|..+..++.+.|++++|+..+++.+.- .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555666777888888888888874331111 22 37888888888888888888888877631 1
Q ss_pred CCCCCChhhH----HHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 235 GWDPDNVPAY----DSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 235 ~~~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+.|++..+| .....++... |++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHh
Confidence 2377777777 7777777777 888888888877665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00046 Score=50.85 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 366 EASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
.+...|++..+.... +...+..+...|...|++++|.+.|+...+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666654432 55666677777777777777777777777643 2234566677777777777777777777765
Q ss_pred Hc
Q 038748 446 EK 447 (482)
Q Consensus 446 ~~ 447 (482)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0019 Score=49.36 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHH
Q 038748 291 QNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK----GRKLWE 366 (482)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 366 (482)
+++++|.+.|.... +.| .++.. |-..|...+.+++|++.|++..+.| +...+..+-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa-~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHH-cCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35566666666664 333 22322 4445555556666666666666653 34455555555555 566666
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcC
Q 038748 367 ASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENH 413 (482)
Q Consensus 367 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 413 (482)
|..+|++..+.| +...+..|...|.. .+++++|.+.|+...+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666666654 34455556666655 566666666666666655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00085 Score=46.69 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAI 180 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 180 (482)
...|..+...+...|++++|...|++.....+.+..++..+..++...|++++|...|++..+... .+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 455666666777777777777777777766666666677777777777777777777777666432 2344454444444
Q ss_pred H
Q 038748 181 C 181 (482)
Q Consensus 181 ~ 181 (482)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=66.88 Aligned_cols=89 Identities=11% Similarity=-0.119 Sum_probs=52.8
Q ss_pred HHhcCChHhHHHHHHHhhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-----cCCCCCChhhHHH
Q 038748 180 ICRDGKTIDAWQFLRVVDG----RIKP----DNDTYAILLEGWEKERDVANAKKTFGEMVIE-----VGWDPDNVPAYDS 246 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~ 246 (482)
+...|++++|+.++++... -+.+ ...+++.|..+|...|++++|+.++++...- ..-.|+...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456777777777765321 1112 2456777777777777777777777665431 1223444455666
Q ss_pred HHHHHHccCCChHHHHHHHHHHH
Q 038748 247 YLITLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 247 l~~~~~~~~~~~~~a~~~~~~m~ 269 (482)
|...+... |++++|+.++++..
T Consensus 399 La~~~~~~-G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHA-GHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHH
Confidence 66666666 66666666666544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=8e-05 Score=54.49 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=9.0
Q ss_pred HHHHHHHhhCChhhHHHHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVME 162 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~ 162 (482)
.+...+...|++++|++.|+...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al 31 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLI 31 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444443333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00059 Score=48.84 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 98 KHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+-+...|..+...+...|++++|+..|++..+.++.+..+|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466778888888888888888888888888888777778888888888888888888888877653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0012 Score=45.92 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+..+...+...|++++|...|++.....+.+..++..+..++.+.|++++|...|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444322223334444444444444555555555444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00042 Score=53.67 Aligned_cols=108 Identities=9% Similarity=-0.057 Sum_probs=56.4
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
.+.+.+++|.+.++...+... .+...|+.+-.++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHH
Confidence 344556666666666665542 255555555555555554432221111 1446666
Q ss_pred HHHHhHHhcCCCCCChhhHHHHHHHHHccCC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 226 TFGEMVIEVGWDPDNVPAYDSYLITLLKGCD-----------GIYETVNSLKRMMERGCNPGMTFFKLAF 284 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li 284 (482)
.|++.. .+.|+...+|..+..++... | ++++|++.|++..+. .|+...|...+
T Consensus 68 ~le~AL---~ldP~~~~A~~~LG~ay~~l-g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 68 KFEEAL---LIDPKKDEAVWCIGNAYTSF-AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHH---HHCTTCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHH---HhCcCcHHHHHHHHHHHHHh-cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 666654 33565556666666666554 3 566666666666553 34444443333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=46.58 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 202 PDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
.+...+..+..+|...|++++|+..|++..+. .|++..+|..+..++... |++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 35556666666666666666666666666533 555555666666666666 666666666665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00099 Score=51.56 Aligned_cols=65 Identities=5% Similarity=-0.156 Sum_probs=29.9
Q ss_pred hhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCc----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 038748 82 GPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLF----------DAMWDAIKSMKKENVLSLATFASVFSSYVVA 148 (482)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 148 (482)
++|.+.++.... -.+.+...|+.+..++...+++ ++|+..|++..+.++....+|..+..+|...
T Consensus 19 eeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 19 EQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444444444333 2233444444444444444332 2555555555555444444555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.052 Score=55.31 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
..++..+.+.|.+++|+++.+.-. .-...+...|+++.|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcC
Confidence 445555555555555554442110 1122334556666666554433 24556666666666666
Q ss_pred CHHHHHHHHHHh
Q 038748 219 DVANAKKTFGEM 230 (482)
Q Consensus 219 ~~~~a~~~~~~~ 230 (482)
+++.|++.|..+
T Consensus 696 ~~~~A~~~y~~~ 707 (814)
T 3mkq_A 696 NFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 666666666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.022 Score=58.10 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=79.8
Q ss_pred HhhCChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038748 146 VVADRVKDAIT-TFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAK 224 (482)
Q Consensus 146 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (482)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. .. .-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD--------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH---HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC--------cc---hheehhhhcCCHHHHH
Confidence 34566666655 33111 1122235566666777777777654421 11 1123345567777777
Q ss_pred HHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 225 KTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
++.+.+. +...|..+...+.+. ++++.|.+.|..+.. |..+...+...|+.+...++-+...
T Consensus 673 ~~~~~~~--------~~~~W~~la~~al~~-~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 673 DLLTDES--------AEMKWRALGDASLQR-FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHTTCC--------CHHHHHHHHHHHHHT-TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC--------cHhHHHHHHHHHHHc-CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 7654331 455777777777777 777777777776543 3344444555666655554444432
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 305 GRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDE 338 (482)
Q Consensus 305 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 338 (482)
..| -++.-..+|.+.|++++|++++.+
T Consensus 735 -~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 735 -TTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -HTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -HcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 222 122233334445555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.027 Score=50.23 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 310 RPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 310 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345555555544555566666666666665543 4544454455555556666666666665555
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0056 Score=56.82 Aligned_cols=88 Identities=13% Similarity=-0.142 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHhC---CCcc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hhHHHHH
Q 038748 360 KGRKLWEASGLFNEMVKN---ENVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ETGNLLV 425 (482)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~li 425 (482)
..|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++..+. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467788888888776652 1222 2346777888888888888888888876631 2 12333 5677788
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 038748 426 AGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
..|...|++++|+.++++..+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8888888888888888877654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.004 Score=57.75 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=56.9
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-Ccc-ChhhHHHHH
Q 038748 325 YSNETGAAMKLLDEMVYN---GAFPD----IQTYNILFEFLVKGRKLWEASGLFNEMVKN-----E-NVL-NHENCRAAV 390 (482)
Q Consensus 325 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li 390 (482)
..|++++|+.++++..+. -+-|+ ..+++.+..+|...|++++|..++++.++. | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456777888777766552 11121 256777777788888888888887776643 2 122 234577777
Q ss_pred HHHhcCCChHHHHHHHHHHHH
Q 038748 391 RVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~m~~ 411 (482)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888887777655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0055 Score=43.32 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLA-TFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
...+...|++++|+..|++..+..+.+.. .+..+..++...|++++|.+.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455566666666666666666655555 66666666666666666666666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0089 Score=55.52 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=68.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---Ccc----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHc-----C-CCCCh-hh
Q 038748 355 FEFLVKGRKLWEASGLFNEMVKNE---NVL----NHENCRAAVRVYMDSDDPYVAIKFWKYMIEN-----H-CSDLS-ET 420 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~-~~ 420 (482)
+..+...|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++..+. | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788999999998887641 122 2346788888999999999999999887631 2 22333 57
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038748 421 GNLLVAGLCDMHMLPEAVKYAKGMA 445 (482)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~ 445 (482)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999998874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.016 Score=40.44 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=56.3
Q ss_pred CCCHhhHHHHHHHHhhCCC---cHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 98 KHSPYAWNLVVDLLGKNCL---FDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
+.|+..+..+..++...++ .++|..+|++....++.+..+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777765544 7899999999999888888888888899999999999999999988864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.012 Score=54.73 Aligned_cols=89 Identities=8% Similarity=-0.087 Sum_probs=44.0
Q ss_pred HHHhcCChHhHHHHHHHhhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-----cCCCCCChhhHH
Q 038748 179 AICRDGKTIDAWQFLRVVDG----RIKP----DNDTYAILLEGWEKERDVANAKKTFGEMVIE-----VGWDPDNVPAYD 245 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~~~~~~~ 245 (482)
.+...|++++|++++++... -+.| ...+++.+..+|...|++++|+.++++...- ....|+...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34445566666666655322 1111 1345555566666666666666665554421 122333334455
Q ss_pred HHHHHHHccCCChHHHHHHHHHH
Q 038748 246 SYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 246 ~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
.+...+... |++++|+.++++.
T Consensus 376 nLa~~~~~~-g~~~eA~~~~~~A 397 (429)
T 3qwp_A 376 KVGKLQLHQ-GMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCHHHHHHHHHHH
Confidence 555555555 5555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.075 Score=47.43 Aligned_cols=75 Identities=8% Similarity=-0.057 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHH
Q 038748 200 IKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTF 279 (482)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 279 (482)
.+.+..+|..+...+...|++++|...+++...- .| +...|..+...+... |++++|.+.|++.... .|...+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~-s~~a~~llG~~~~~~-G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EM-SWLNYVLLGKVYEMK-GMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CCCcCh
Confidence 3556667777666666667777777777777643 35 455555555666666 7777777777776664 355555
Q ss_pred HH
Q 038748 280 FK 281 (482)
Q Consensus 280 ~~ 281 (482)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.027 Score=39.60 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=21.5
Q ss_pred HhcCChHhHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 181 CRDGKTIDAWQFLRVVDGRIKPDND-TYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 181 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...|++++|...|+......+.+.. .+..+..+|...|++++|...|++..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444443222223333 44444444444444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.066 Score=45.81 Aligned_cols=84 Identities=6% Similarity=-0.066 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCccC---hhhHHHHHHHHhc-----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChh
Q 038748 365 WEASGLFNEMVKNENVLN---HENCRAAVRVYMD-----SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDM-HMLP 435 (482)
Q Consensus 365 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 435 (482)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++..+...++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445555442 233 3345555555555 366666666666666532111244555555555553 6666
Q ss_pred HHHHHHHHHHHcCCC
Q 038748 436 EAVKYAKGMAEKGIQ 450 (482)
Q Consensus 436 ~A~~~~~~m~~~~~~ 450 (482)
++.+++++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.052 Score=41.48 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC---ChHhHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 038748 151 VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG---KTIDAWQFLRVVDGRIKP--DNDTYAILLEGWEKERDVANAKK 225 (482)
Q Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 225 (482)
...+.+-|.+..+.|. ++..+...+..++++++ +.+++..+|+.+-+...| +...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344555555544443 56666666666666666 455666666664332222 34455566667777888888888
Q ss_pred HHHHhHHhcCCCCCCh
Q 038748 226 TFGEMVIEVGWDPDNV 241 (482)
Q Consensus 226 ~~~~~~~~~~~~p~~~ 241 (482)
.++.+.+ +.|++.
T Consensus 93 y~~~lL~---ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ---TEPQNN 105 (152)
T ss_dssp HHHHHHH---HCTTCH
T ss_pred HHHHHHh---cCCCCH
Confidence 8877764 366544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.08 Score=36.84 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc
Q 038748 202 PDNDTYAILLEGWEKERD---VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~ 271 (482)
.|...+..+..++...++ .++|..++++... ..|++..+...+...+... |++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFIS-FRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 344444444444433332 4555555555542 2555555555555555555 5555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.45 Score=37.35 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=20.1
Q ss_pred hhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhh
Q 038748 147 VADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVD 197 (482)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 197 (482)
+.|+++.|.++.+.+ .+...|..|.......|+++-|+..|....
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344444444444333 133444444444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.046 Score=41.80 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHH
Q 038748 363 KLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSD---DPYVAIKFWKYMIENHCSD--LSETGNLLVAGLCDMHMLPEA 437 (482)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 437 (482)
.+..+.+-|.+....+. ++..+...+..++++.+ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777665 57777778888888888 6779999999998865 34 345666677788999999999
Q ss_pred HHHHHHHHHcC
Q 038748 438 VKYAKGMAEKG 448 (482)
Q Consensus 438 ~~~~~~m~~~~ 448 (482)
.++++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.11 Score=37.04 Aligned_cols=65 Identities=2% Similarity=-0.101 Sum_probs=40.0
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKE-------NVLSLATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
+...+..+...+.+.|++..|...|+...+. +......+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455566666666667777777666665543 2234556666666666666666666666666653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=1.5 Score=40.77 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--hh
Q 038748 281 KLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----THMYNMMISLYCYSNETGAAMKLLDEMVY----NGAFPDI--QT 350 (482)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~ 350 (482)
..+...+...|++.+|.+++..+..+..-.-+ ...+...++.|...+++.+|..++.+... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566667777777777777776422111111 34556666777777777777777776532 2122221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038748 351 YNILFEFLVKGRKLWEASGLFNEMVK 376 (482)
Q Consensus 351 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 376 (482)
+...+..+...+++.+|...|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555556667777777777666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.34 Score=35.54 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=61.3
Q ss_pred HhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHh---HHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCH
Q 038748 146 VVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTID---AWQFLRVVDGRIKP--DNDTYAILLEGWEKERDV 220 (482)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 220 (482)
........+.+-|......|. ++..+--.+..+++++.+... ++.+++.+-....| .....-.+.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 333445555666665555554 666666667777777776555 77777776543323 344555667788899999
Q ss_pred HHHHHHHHHhHHhcCCCCCChh
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
++|.+.++.+.+. .|++..
T Consensus 91 ~~A~~~~~~lL~~---eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQT---EPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHHHHHHHHHh---CCCCHH
Confidence 9999999888754 776544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.15 Score=36.30 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHHHHHhcC------CCCCHhhHHHHHHHHHhcCChHhHHHHHHHh
Q 038748 135 LATFASVFSSYVVADRVKDAITTFDVMEQYG------CKHDVFALNSLLSAICRDGKTIDAWQFLRVV 196 (482)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 196 (482)
...+..+...+.+.|++..|...|+...+.. -.+....+..|..++.+.|+++.|...+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445556666666677777776666655421 0122334444555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.65 Score=34.33 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=36.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
...+...+..+...|+-++-.+++.++.. +..|++.....+..+|.+.|+..+|.+++.+.-++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555566666666666655433 2344555555566666666666666666666655554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.33 Score=36.68 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038748 396 SDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQV 451 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (482)
.+++++|.++|+.+++.+-.- ...|-....--.+.|+...|.+++.+.+..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776542111 4455555555567777777777777777766543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=1.3 Score=41.26 Aligned_cols=190 Identities=10% Similarity=0.076 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC---ChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----h
Q 038748 217 ERDVANAKKTFGEMVIEVGWDPD---NVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECL----T 289 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~ 289 (482)
.|+++.|++.+..+.+......| .......++..+... ++++...+.+..+.+..... ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc
Confidence 36777887777777654222222 233455666677777 78877777666554432121 222333333332 2
Q ss_pred cCChhHH--HHHHHHhhcccCCC-----CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HhhHHHH
Q 038748 290 GQNLRGA--EFIWGAMVGRIGFR-----PD---THMYNMMISLYCYSNETGAAMKLLDEMVYN--GAFPD---IQTYNIL 354 (482)
Q Consensus 290 ~g~~~~a--~~~~~~~~~~~~~~-----~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l 354 (482)
....+.. ..+.... ..+. .. ......|...|...|++.+|.+++..+... |.... ...+...
T Consensus 107 ~~~~d~~~~~~~i~~l---~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 107 SKSLDLNTRISVIETI---RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HCTTHHHHHHHHHHCC---SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2322221 1122111 1111 11 123355667777777777777777776542 22111 2345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCccC--hhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 355 FEFLVKGRKLWEASGLFNEMVK----NENVLN--HENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 355 l~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
++.|...+++.+|..+++++.. ....|+ ...|...+..+...+++.+|.+.|.++.+
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6677777777777777776532 111221 12345556666666777777776666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.91 Score=33.57 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 345 (482)
...+...+..+...|+-++..+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666666432 33455555666666666666666666666666666553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=1.8 Score=37.05 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCCCHHHH
Q 038748 121 WDAIKSMKKENVLSLATF 138 (482)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~ 138 (482)
+.+++-+...++.+....
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll 69 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLS 69 (301)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhCCCCHHHH
Confidence 455666666665444333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.0088 Score=54.79 Aligned_cols=217 Identities=10% Similarity=0.052 Sum_probs=126.4
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
-|+..|..+|.+..+.|.+++-++.+...++. ..+...=+.|+-+|++.++..+-.+.+ . .|+..-...+.+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 152 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHH
Confidence 35566777778888888887777777665554 323333456777777777765543322 1 255555666667
Q ss_pred HHHhcCChHhHHHHHHHhhC---------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 038748 179 AICRDGKTIDAWQFLRVVDG---------------------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWD 237 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (482)
-|...|.++.|.-+|..+.. .-..++.||-.+-.+|...+.+.-|.-.--.+.- .
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----h 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----H 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----C
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----c
Confidence 77777777777666655432 1134667888888888888877766544333321 2
Q ss_pred CCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCC------
Q 038748 238 PDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRP------ 311 (482)
Q Consensus 238 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------ 311 (482)
|| ....++..|-.. |.+++.+.+++.-... -......|+.|.-.|++- ++++..+.++....+-+++.
T Consensus 229 ad---eL~elv~~YE~~-G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 AD---ELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp SS---CCSGGGSSSSTT-CCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred HH---HHHHHHHHHHhC-CCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22 122334444455 7777777777765532 123456677766666654 44444444443322222221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 038748 312 DTHMYNMMISLYCYSNETGAAM 333 (482)
Q Consensus 312 ~~~~~~~li~~~~~~~~~~~a~ 333 (482)
....|.-++-.|+.-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 2345677777777777777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.5 Score=34.38 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=22.8
Q ss_pred hhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHH
Q 038748 112 GKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVM 161 (482)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 161 (482)
...|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 23444555555555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.25 E-value=3.1e-05 Score=70.34 Aligned_cols=215 Identities=9% Similarity=0.131 Sum_probs=132.1
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
-.+.+|..+..+..+.+...+|++-|-+ . .|+..|..+|.+..+.|.+++-+..+.-.++.. -++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3467899999999999988888654422 1 244558899999999999999999887776653 34455568999
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------------------CCCCCC
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEV------------------GWDPDN 240 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------~~~p~~ 240 (482)
+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+..-. .-+..+
T Consensus 125 ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998776544332 4666666777888888888888877776542100 011224
Q ss_pred hhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCC-CCCHHHHHHH
Q 038748 241 VPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGF-RPDTHMYNMM 319 (482)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l 319 (482)
+.+|..+-.++... +.+.-|.-.--.+.-. +| -...++..|-..|.+++...+++.-+ |. .....+|+-|
T Consensus 199 ~ktWKeV~~ACvd~-~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTEL 269 (624)
T 3lvg_A 199 TRTWKEVCFACVDG-KEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTEL 269 (624)
T ss_dssp SCSHHHHTHHHHHS-CTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHH
T ss_pred hhHHHHHHHHHhCc-hHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHH
Confidence 44555555555555 5544443222222211 11 11234455556666666666666554 22 2345566666
Q ss_pred HHHHHhcCCHHHHHHHH
Q 038748 320 ISLYCYSNETGAAMKLL 336 (482)
Q Consensus 320 i~~~~~~~~~~~a~~~~ 336 (482)
.-.|++- ++++..+.+
T Consensus 270 aILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHHHHSS-CTTHHHHHH
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 6666654 344444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.33 Score=44.29 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHHHH
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDTYA 208 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~ 208 (482)
..++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. |+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344555555666666666655555432 12455566666666666666666666655432 5566555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.6 Score=46.21 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=81.8
Q ss_pred HHHHHHHhhCCC-cHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHhhC-ChhhHHHHHHHHHhc------CCCC-CH----
Q 038748 105 NLVVDLLGKNCL-FDAMWDAIKSMKKENVLSLATFA-SVFSSYVVAD-RVKDAITTFDVMEQY------GCKH-DV---- 170 (482)
Q Consensus 105 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 170 (482)
..++..+...++ .+.|..+|+++....+.....+. .++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555666 57899999999988764433333 3333332222 233455555544321 1111 11
Q ss_pred ------hhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 171 ------FALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 171 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
...+.-...+...|+++.|+++-++...-.+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222223456678999999999988766567778999999999999999999999998873
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.95 E-value=0.57 Score=34.36 Aligned_cols=77 Identities=16% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhh---HHHHHHHHHhcCCCC--CHhhHHHHHHHHHhcCChHhHHHHH
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVADRVKD---AITTFDVMEQYGCKH--DVFALNSLLSAICRDGKTIDAWQFL 193 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 193 (482)
.+.+-|.+....+.++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344444434344444444444555554443333 445555444432 11 1222233334455555555555555
Q ss_pred HHh
Q 038748 194 RVV 196 (482)
Q Consensus 194 ~~~ 196 (482)
+.+
T Consensus 98 ~~l 100 (126)
T 1nzn_A 98 RGL 100 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.89 E-value=2.3 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=23.6
Q ss_pred CCCHhhHHHHHHHHhhCCCc------HHHHHHHHHHHhcCCC
Q 038748 98 KHSPYAWNLVVDLLGKNCLF------DAMWDAIKSMKKENVL 133 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~ 133 (482)
+-|.++|-..+..+-+.|++ ++..++|++....-+|
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp 51 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP 51 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence 34566677777776666777 6667777766665444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.73 E-value=0.36 Score=33.42 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILL 211 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 211 (482)
+..+-++.+....+.|++.+..+.+++|-+.+++..|..+|+-++........+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 44444455555555555555555555555555555555555555443333333344433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.57 E-value=5.9 Score=41.97 Aligned_cols=129 Identities=5% Similarity=0.034 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHH
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPG----MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMM 319 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 319 (482)
|..++..+-+. +.++.+.++-....+....-+ ...|..+++.+...|++++|...+-.+. .... -......|
T Consensus 902 Y~hv~~LFe~~-~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~--r~~cLr~L 977 (1139)
T 4fhn_B 902 YLHLSKKLFEE-SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHT-SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSS--CHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHH--HHHHHHHH
Confidence 45555555555 666666666555544321111 1135556666666666666666665553 2221 23334444
Q ss_pred HHHHHhc------------CCHHHHHHHHHHHHHCCCCC-CHhhHHHHHH-HHHhcCCHHHHH-HHHHHHHh
Q 038748 320 ISLYCYS------------NETGAAMKLLDEMVYNGAFP-DIQTYNILFE-FLVKGRKLWEAS-GLFNEMVK 376 (482)
Q Consensus 320 i~~~~~~------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~ 376 (482)
+..+|.. |..+++.+++....+....+ +...|..++. -+...|++.+|- -+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 4444433 34556666654332211001 1112434443 345566666544 45555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.20 E-value=11 Score=38.31 Aligned_cols=258 Identities=7% Similarity=-0.080 Sum_probs=119.3
Q ss_pred HHHhhCCCcHHHHHHHHHHHhcC-CCCHH--HHHHHHHHHHhhCChhhHHHHHHHHHhcCC-------CCCHhhHHHHHH
Q 038748 109 DLLGKNCLFDAMWDAIKSMKKEN-VLSLA--TFASVFSSYVVADRVKDAITTFDVMEQYGC-------KHDVFALNSLLS 178 (482)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~ 178 (482)
-+....|+.++++.+++.....+ ..+.. .=..+.-+.+..|..+++..++.......- .+....-.++--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556677777777776655422 12222 222333344555555566666665554311 011122222323
Q ss_pred HHHh--cCChHhHHHHHHH-hhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 179 AICR--DGKTIDAWQFLRV-VDGRIKPDNDTYA--ILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 179 ~~~~--~g~~~~a~~~~~~-~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
+++- .++- ++.+.+.. +... .+...... .|...++-.|+-+....++..+... ..+++.-...+..+++.
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 3333 3333 33333333 3321 11111122 2333344556666666666665532 12222223333334445
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFK--LAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
. |+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.
T Consensus 537 ~-g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 Y-GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp T-TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred C-CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 5 77777777777766532 22221111 2234556677777777677776422 12223222222234444566666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKL-WEASGLFNEMVK 376 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 376 (482)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 667766555543 34444334444444444443 466667777754
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.90 E-value=1.5 Score=30.43 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=50.1
Q ss_pred HHHHHccCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHH
Q 038748 248 LITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMIS 321 (482)
Q Consensus 248 ~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 321 (482)
...++.... +.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+. .....+|..++.
T Consensus 15 y~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 15 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 334444323 556677777777777888888888888999999999999999888884333 333445665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.54 E-value=13 Score=37.79 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~ 341 (482)
+|+..|+.....++++.+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444454444445554444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.17 E-value=4.3 Score=43.02 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----------------
Q 038748 318 MMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENV----------------- 380 (482)
Q Consensus 318 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------------- 380 (482)
.++..+...+..+.+.++..... -+...--.+..++...|++++|.++|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 34555566666666655443322 23333344556677788888888888765221 10
Q ss_pred ------cChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038748 381 ------LNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS----ETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 381 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (482)
.-..-|.-++..+.+.+.++.+.++-+..++..-.-+. ..|..+++++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01124667888888899999999888777754221121 2678889999999999999999988876654
Q ss_pred CCHHHHHHHHHHHHHhccHHHH
Q 038748 451 VTPFALSKLKQILIKARKEAVY 472 (482)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~a 472 (482)
-...+..|+..+++.|..+.-
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhh
Confidence 466788888888888776544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.97 Score=44.77 Aligned_cols=129 Identities=13% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-hHhHHHHHHH-hhC------CCC-CCH-
Q 038748 136 ATFASVFSSYVVADR-VKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK-TIDAWQFLRV-VDG------RIK-PDN- 204 (482)
Q Consensus 136 ~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~-~~~------~~~-~~~- 204 (482)
.....++..+...++ ++.|..+|+++.+.....+......++..+...++ --+|.+++.+ ++. ... .+.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344556666666666 58899999999886422222222333333333322 2224444433 321 111 121
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHH
Q 038748 205 ---------DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRM 268 (482)
Q Consensus 205 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m 268 (482)
.....-...+...|+++.|+.+-++.. .+.|++..+|..|..+|... |+++.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l-~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKK-EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHh-ccHHHHHHHHhcC
Confidence 122233455677899999999999986 55898999999999999999 9999999999876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=2.2 Score=38.77 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=41.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHH
Q 038748 388 AAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMA-----EKGIQVTPFAL 456 (482)
Q Consensus 388 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~~ 456 (482)
.++.++...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++. +.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45555666666766666666665543 2344566666677777777777766666553 34666666543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.89 Score=33.40 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 154 AITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 154 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
..+-++.+....+.|++....+.+++|-+.+|+..|..+|+-++.+..+...+|..+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 344444444445555555555555555555555555555555544333333334443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.72 E-value=3.3 Score=30.48 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 257 GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 257 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.+..+ +.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHH
Confidence 45566666777777778888888888888888888888888888887433 333444566555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.13 E-value=6.3 Score=29.05 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 378 ENVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 378 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
+-.|+..+--.+..++.+..+ ...++.+++++.+.+..-....+-.|.-|+.+.|++++|.++.+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 445566665556666666654 45688888888876521123566677788999999999999999888654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.88 E-value=4.1 Score=30.06 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=35.7
Q ss_pred CCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRK---LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
.|+..+--....++.+..+ ..++..+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444344445555443 335666666666544222233344455566666777777776666665
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.61 E-value=8.3 Score=32.49 Aligned_cols=114 Identities=8% Similarity=-0.068 Sum_probs=78.2
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHh----hHHHHHHHHHhc
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVF----ALNSLLSAICRD 183 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~ 183 (482)
+..+.+.|++++|++....-.+..+.|...-..+++.+|-.|+++.|.+-++...+.. |+.. .|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH----
Confidence 3456788999999999999999999999999999999999999999999999888753 4332 33333332
Q ss_pred CChHhHHHHHHHhhC-C-----CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhHHh
Q 038748 184 GKTIDAWQFLRVVDG-R-----IKPDNDTYAILLEGWE--KERDVANAKKTFGEMVIE 233 (482)
Q Consensus 184 g~~~~a~~~~~~~~~-~-----~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 233 (482)
+..-..+-. + +.....-...++.+.. ..|+.++|.++-.+....
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222221 1 1222333444555444 468999999888887653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.34 E-value=9.8 Score=28.46 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=32.4
Q ss_pred CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 346 PDIQTYNILFEFLVKGRK---LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 346 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
|+..+--....++.+..+ ..++..+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444443334444555443 334555666555533221222233444556666666666666666665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=29 Score=33.68 Aligned_cols=271 Identities=11% Similarity=0.083 Sum_probs=136.8
Q ss_pred ccHHHHhhhcCCCCCHHHH-HHHHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHH
Q 038748 52 PTVEDVLDKTLIRVSQETV-EQVLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMK 128 (482)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~-~~ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 128 (482)
.++...+.+..-.|-...+ ...+. ...+++...+.++. ..+.+...-+....+....|+..+|......+-
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW 129 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3466666665544443333 22222 12455655555444 224466666777788888888877877777777
Q ss_pred hcCCCCHHHHHHHHHHHHhhCChhhH--HHHHHHHHhcC-----------CCCCHhh-HHHHHHHHHhcCChHhHHHHHH
Q 038748 129 KENVLSLATFASVFSSYVVADRVKDA--ITTFDVMEQYG-----------CKHDVFA-LNSLLSAICRDGKTIDAWQFLR 194 (482)
Q Consensus 129 ~~~~~~~~~~~~li~~~~~~~~~~~a--~~~~~~~~~~~-----------~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~ 194 (482)
..+......+..++..+.+.|.+... ..=++.+...| +.++... ...++..+ .+...+.....
T Consensus 130 ~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~ 206 (618)
T 1qsa_A 130 LTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFAR 206 (618)
T ss_dssp SCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHh
Confidence 66655555677777777766654332 22222222222 1111111 11111111 11222222111
Q ss_pred HhhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCCh-hhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 195 VVDGRIKPDND---TYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNV-PAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 195 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
. ..++.. .+...+.-+.+ .+.+.|...+........+.+... .....+...+... +...++...+.....
T Consensus 207 ~----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~-~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 207 T----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN-DVTDEQAKWRDDAIM 280 (618)
T ss_dssp H----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST-TCCHHHHHHHHHHHH
T ss_pred c----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHc-CCChHHHHHHHhccc
Confidence 1 122222 22222333333 377888888888765433332111 1122222222233 435566666666544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 271 RGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 271 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
.. .+.....-.+....+.|+++.|...|..|. ... ........-+..++...|+.++|..+|..+.+
T Consensus 281 ~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~-~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLP-MEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-TTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcc-ccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33 333333344444556789999999998884 211 12344445566677788898888888887654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.53 E-value=8.2 Score=30.87 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038748 364 LWEASGLFNEMVKNENVL-NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD 416 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 416 (482)
...+..+|..|...|+.- -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555554443322 22334444444445555555555555555444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.34 E-value=12 Score=27.95 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=50.3
Q ss_pred ccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038748 380 VLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5666666666777777665 45688888888875422233455667788999999999999999998765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.58 E-value=28 Score=31.50 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCChHhHHHHHHHhhC
Q 038748 171 FALNSLLSAICRDGKTIDAWQFLRVVDG 198 (482)
Q Consensus 171 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 198 (482)
.....|...|.+.|+.++..+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566777777777777777666544
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=82.56 E-value=9.8 Score=28.89 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCC
Q 038748 120 MWDAIKSMKKENV--LSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKH 168 (482)
Q Consensus 120 a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 168 (482)
+.++|..|..+++ .-+..|......+-..|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555544443 233444444444444455555555555444443333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.07 E-value=5.4 Score=30.77 Aligned_cols=118 Identities=7% Similarity=-0.052 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhC--CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhh
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDG--RIKPD-------NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPA 243 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 243 (482)
+-.-+..+...|.++.|+-+.+.+.. +..|+ ..++..+.+++...|++..|...|++........+.+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33445566666777777666655322 12222 2355667777888888888888888765432222222111
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
...+ . .. ..... ......+...--.+..+|.+.|++++|..+++.+.
T Consensus 103 ~~~~-~--~~--ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPST-G--NS--ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccc-c--cc--CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1111 0 00 00000 00112233444446777788888888888888764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.73 E-value=26 Score=30.69 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=92.1
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHH----HHHHHhcCCCCCHhhHHHHHHHHH
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITT----FDVMEQYGCKHDVFALNSLLSAIC 181 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~ 181 (482)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++.+.+.++++|......++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4445577788888888876542 2234444555444443 355555677777777777777766
Q ss_pred hcCChH--------hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc
Q 038748 182 RDGKTI--------DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK 253 (482)
Q Consensus 182 ~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 253 (482)
....-+ +|+++-........-|......+...|.+.+++.+|+..|- . |-.+ +...+..++..+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~-s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKE-SPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTT-HHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCc-hHHHHHHHHHHHHH
Confidence 554321 12222222112245577888888888999999888887762 1 3333 34566555555555
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 254 GCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
. +...++ +... ...+--|.-.+++..|..+++...
T Consensus 180 ~-~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 Q-DESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp T-SCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h-cCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4 322111 1112 222334455677887777766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.46 E-value=8.6 Score=29.64 Aligned_cols=60 Identities=7% Similarity=-0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMERG-CNPG-------MTFFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
+..-+..++.. +.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++.+
T Consensus 23 l~dqik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445555566 66666666665544321 1122 1244555667777777777777777754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.01 E-value=26 Score=32.25 Aligned_cols=56 Identities=13% Similarity=-0.077 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChHhHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038748 175 SLLSAICRDGKTIDAWQFLRVVDG---RIKPDNDTYAILLEGWEKERDVANAKKTFGEM 230 (482)
Q Consensus 175 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (482)
.+...|.+.|+++.|.+.|.++.. +...-...+-.+++.+...+++..+...+.+.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444444444444444444322 12222334444444555555555555544444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.39 E-value=12 Score=25.88 Aligned_cols=13 Identities=8% Similarity=-0.059 Sum_probs=5.5
Q ss_pred HhhCChhhHHHHH
Q 038748 146 VVADRVKDAITTF 158 (482)
Q Consensus 146 ~~~~~~~~a~~~~ 158 (482)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3344444444433
|
| >2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=80.26 E-value=20 Score=29.98 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=14.5
Q ss_pred ChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 240 NVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
...++..++..+... ..+-+++..|+.
T Consensus 228 G~Is~~Ef~~~~~~~-~~l~~~l~~~d~ 254 (256)
T 2jul_A 228 GVVTIDEFLETCQKD-ENIMNSMQLFEN 254 (256)
T ss_dssp CSBCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHhC-HHHHHHHHhhcc
Confidence 334555555555555 555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.17 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.92 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.63 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.43 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.26 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.21 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.9e-21 Score=177.99 Aligned_cols=378 Identities=11% Similarity=0.004 Sum_probs=312.2
Q ss_pred hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHH
Q 038748 76 FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAI 155 (482)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 155 (482)
...|+++.|.+.|+.+.. ..+-++.++..+...+.+.|++++|...|++..+.++.+..+|..+..+|.+.|++++|+
T Consensus 10 ~~~G~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 356999999999998877 344578899999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 038748 156 TTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVG 235 (482)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 235 (482)
..+....+... .+..............+....+............................+....+...+......
T Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (388)
T d1w3ba_ 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-- 164 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc--
Confidence 99999988653 345555555566666666666666665544444556666777777788889999999888888644
Q ss_pred CCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHH
Q 038748 236 WDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHM 315 (482)
Q Consensus 236 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (482)
.|+....+..+...+... +++++|...+++..+.. +-+...+..+...+...|++++|...+....+. . ..+...
T Consensus 165 -~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~ 239 (388)
T d1w3ba_ 165 -QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-S-PNHAVV 239 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-C-TTCHHH
T ss_pred -CcchhHHHHhhccccccc-CcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH-h-hhHHHH
Confidence 677788888888888888 99999999999988753 335677888999999999999999999998632 2 446777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 316 YNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 316 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+..+...+.+.|++++|+..|++..+... -+...+..+...+...|++++|.+.++....... .+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHH
Confidence 88889999999999999999999988632 2567788899999999999999999999887643 467788899999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Q 038748 396 SDDPYVAIKFWKYMIENHCSDL-SETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARK 468 (482)
Q Consensus 396 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 468 (482)
.|++++|.+.|++..+. .|+ ..++..+..+|.+.|++++|...|++..+... -+...|..+..+|.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 99999999999998874 354 46788899999999999999999999987642 246788889888888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-20 Score=173.01 Aligned_cols=363 Identities=10% Similarity=-0.079 Sum_probs=300.8
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
+...+.+.|++++|.+.|+++.+..+.+..++..+..+|.+.|++++|...|+...+... -+..++..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 345567889999999999999998888899999999999999999999999999988753 3678899999999999999
Q ss_pred HhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHH
Q 038748 187 IDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLK 266 (482)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 266 (482)
++|.+.+.......+.+...+..........+....+.......... .+................ +....+...+.
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKAL-GRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc-chhhhhHHHHH
Confidence 99999999977666677777777777777778877777777666543 222344555566666666 88888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038748 267 RMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFP 346 (482)
Q Consensus 267 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 346 (482)
...... +-+...+..+...+...|++++|...+...++.. +-+...|..+...+...|++++|...++.....+. .
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 235 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence 877653 3356778888889999999999999999987332 33567888999999999999999999999888643 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038748 347 DIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVA 426 (482)
Q Consensus 347 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 426 (482)
+...+..+...+.+.|++++|...|++..+.... +..++..+..++...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 5677888889999999999999999999886543 56788899999999999999999999988754 456678888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCKA 481 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 481 (482)
.+...|++++|++.|++..+... -+...+..+..++.+.|++++|++.+++..+
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887642 3567888999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-13 Score=122.83 Aligned_cols=245 Identities=12% Similarity=0.011 Sum_probs=140.2
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERD 219 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (482)
.....+.+.|++++|+..|+.+.+... -+..+|..+..++...|++++|...|++.....+-+...|..+..+|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 345556667777777777777766542 2456666666777777777777777766544334456666666677777777
Q ss_pred HHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038748 220 VANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFI 299 (482)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 299 (482)
+++|.+.++.... ..|+....+......... .+.......+..+...+.+.++.+.
T Consensus 103 ~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 103 QRQACEILRDWLR---YTPAYAHLVTPAEEGAGG---------------------AGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HHHHHHHHHHHHH---TSTTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHH---hccchHHHHHhhhhhhhh---------------------cccccchhhHHHHHHhhHHHHHHHH
Confidence 7777777766653 233322111000000000 0000011112223334455666666
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038748 300 WGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNEN 379 (482)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 379 (482)
+...++...-..+..++..+...+...|++++|+..|++....... +...|..+...+...|++++|.+.|++.++...
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 6665533333345566666777777777777777777776654221 455666666777777777777777777666432
Q ss_pred ccChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038748 380 VLNHENCRAAVRVYMDSDDPYVAIKFWKYMIE 411 (482)
Q Consensus 380 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 411 (482)
. +...+..+..+|.+.|++++|.+.|++.++
T Consensus 238 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 G-YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 455566677777777777777777776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.7e-13 Score=118.17 Aligned_cols=270 Identities=10% Similarity=-0.018 Sum_probs=184.6
Q ss_pred HHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC
Q 038748 176 LLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC 255 (482)
Q Consensus 176 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 255 (482)
....+.+.|++++|...|+.+.+..+.+..+|..+..+|...|++++|...|.+... +.|++...+..+...+...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~- 100 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE---LKPDNQTALMALAVSFTNE- 100 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc---ccccccccccccccccccc-
Confidence 455567778888888888876655566677777788888888888888888877763 3666777777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKL 335 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 335 (482)
|++++|.+.++...... |+............ ...+.......+..+...+.+.+|...
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHH
Confidence 88888887777776532 22111000000000 000111111122234445667788888
Q ss_pred HHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 336 LDEMVYNG-AFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 336 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
|.+..+.. -..+...+..+...+...|++++|...|++....... +...|..+..+|...|++++|.+.|+...+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 88777642 2335667888888999999999999999999876543 57788899999999999999999999998853
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHhccHHHHH
Q 038748 415 SDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG----------IQVTPFALSKLKQILIKARKEAVYE 473 (482)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~ 473 (482)
+-+...|..+..+|.+.|++++|++.|++.++.. .......+..+-.++...|+.+.+.
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2345778889999999999999999999987531 1222345666666777777665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.8e-10 Score=99.14 Aligned_cols=217 Identities=5% Similarity=-0.000 Sum_probs=155.0
Q ss_pred HhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 038748 101 PYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVAD-RVKDAITTFDVMEQYGCKHDVFALNSLLSA 179 (482)
Q Consensus 101 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 179 (482)
..+|+.+-..+.+.+.+++|+++++.+.+.++.+..+|+....++...| ++++|+..++...+... -+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 4566777777888888888988888888888888888888888887766 48888888888877653 367788888888
Q ss_pred HHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCC--
Q 038748 180 ICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDG-- 257 (482)
Q Consensus 180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-- 257 (482)
+.+.|++++|++.++.+....+.+...|..+..++.+.|++++|+..++.+.+ +.|.+..+|+.+...+... +.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~-~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNT-TGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCSC
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHc-cccc
Confidence 88888888888888887666677888888888888888888888888888874 4777777787766665554 43
Q ss_pred ----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 038748 258 ----IYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYC 324 (482)
Q Consensus 258 ----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 324 (482)
+++|++.+....+.. +-+...|..+...+. ....+++.+.+....+......+...+..++..|.
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 467777777776653 234555555544443 34456666666666422222234455555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.3e-09 Score=95.94 Aligned_cols=266 Identities=10% Similarity=-0.052 Sum_probs=142.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHc----CCCC---C
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEV---GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMER----GCNP---G 276 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~---~ 276 (482)
+..+..+|...|++++|...|++..... +..+.....+..+...+... |++..+...+...... +... .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 3444444555555555555554443211 11111122233334444444 5555555555544321 1111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--
Q 038748 277 MTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYN----GAFPD-- 347 (482)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-- 347 (482)
...+..+...+...|+++.+...+....+.. +.......+..+...+...++...+...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 1234445556666777777776666654211 11223344555556666777777777776655432 11111
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---ChhhHHHHHHHHhcCCChHHHHHHHHHHHH----cCCCCCh-h
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVL---NHENCRAAVRVYMDSDDPYVAIKFWKYMIE----NHCSDLS-E 419 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~-~ 419 (482)
...+..+...+...|++++|...++...+..... ....+..+..++...|++++|.+.++.... .+..|+. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 1234445556677788888888887766543222 223445567778888888888888877653 2333433 4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC----CCHHHHHHHHHHHHHhccHHHHH
Q 038748 420 TGNLLVAGLCDMHMLPEAVKYAKGMAEK----GIQ----VTPFALSKLKQILIKARKEAVYE 473 (482)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~ 473 (482)
.+..+...|...|++++|.+.+++..+. |.. -....+..++..+...++.+++.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 5666777888888888888888876432 321 12234555666666666655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.8e-09 Score=93.43 Aligned_cols=219 Identities=5% Similarity=-0.061 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhh--------------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 038748 119 AMWDAIKSMKKENVLSLATFASVFSSYVVA--------------DRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDG 184 (482)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 184 (482)
.+..+|+++....+.+...|...+..+-+. +..++|..+|+...+...+.+...|...+......|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 344556665555444555554444433221 233555556665554333334445555555555666
Q ss_pred ChHhHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHH
Q 038748 185 KTIDAWQFLRVVDGRIKPD-NDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVN 263 (482)
Q Consensus 185 ~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 263 (482)
+++.|..+|+.+....+.+ ..+|...+..+.+.|+++.|.++|+.+.. ..|.+...|...........|+.+.|..
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 6666666666544322222 33455555555566666666666655542 2333333333322221111145555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038748 264 SLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD--THMYNMMISLYCYSNETGAAMKLLDEMVY 341 (482)
Q Consensus 264 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 341 (482)
+|+.+.+. .+.+...+...+..+.+.|+++.|..+|++.++..+..|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 191 i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555443 2223444455555555555555555555554433222222 23444444444444555555555544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.1e-09 Score=90.83 Aligned_cols=216 Identities=10% Similarity=0.012 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAF 284 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 284 (482)
..++.+...+.+.+.+++|+.+++++.. +.|++..+|+....++....+++++|++.++...+.. +-+..+|....
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~---lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 3455555566666667777777776653 3666666666666666655124677777776666543 22455666666
Q ss_pred HHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-
Q 038748 285 EECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRK- 363 (482)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 363 (482)
..+.+.|++++|...+..+++.. +.+...|..+...+...|++++|++.++++.+.... +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 66667777777777777765221 334666777777777777777777777777665322 44455555444444443
Q ss_pred -----HHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 038748 364 -----LWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSD-LSETGNLLVAGLC 429 (482)
Q Consensus 364 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 429 (482)
+++|...+...++..+. +...|+.+...+.. ...+++.+.++...+....+ +...+..++..|.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 45677777766664432 45555555544443 33566666666666533222 2234444555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.1e-08 Score=88.34 Aligned_cols=272 Identities=9% Similarity=0.015 Sum_probs=122.9
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCC-CC----HhhHH
Q 038748 105 NLVVDLLGKNCLFDAMWDAIKSMKKENVLS-----LATFASVFSSYVVADRVKDAITTFDVMEQYGCK-HD----VFALN 174 (482)
Q Consensus 105 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 174 (482)
......+...|++++|++++++.....+.+ ..++..+..++...|++++|...|+...+.... ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 333445556677777777776666554322 234555566666666777666666665442100 11 12334
Q ss_pred HHHHHHHhcCChHhHHHHHHHhhC-----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 175 SLLSAICRDGKTIDAWQFLRVVDG-----RIK--P-DNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 175 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
.+...+...|++..+...+..... ... + ....+..+...+...|+++.+...+..........
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 166 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 166 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh---------
Confidence 444555555666666655554211 111 1 11233344455555555555555555554321110
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccc---CCCC--CHHHHHHHHH
Q 038748 247 YLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRI---GFRP--DTHMYNMMIS 321 (482)
Q Consensus 247 l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~~li~ 321 (482)
+.......+......+...++...+...+....... +..+ ....+..+..
T Consensus 167 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T d1hz4a_ 167 -------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221 (366)
T ss_dssp -------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred -------------------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 011111222223333334444444444433322110 0000 1122333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccC-hhhHHHHHHHH
Q 038748 322 LYCYSNETGAAMKLLDEMVYNGAFP---DIQTYNILFEFLVKGRKLWEASGLFNEMVKN----ENVLN-HENCRAAVRVY 393 (482)
Q Consensus 322 ~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~ 393 (482)
.+...|++++|...+....+..... ....+..+...+...|++++|...++..... +..|+ ...+..+..+|
T Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 301 (366)
T d1hz4a_ 222 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301 (366)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 4555555555555555443322111 1122333445555566666666655554421 22222 23444555566
Q ss_pred hcCCChHHHHHHHHHHH
Q 038748 394 MDSDDPYVAIKFWKYMI 410 (482)
Q Consensus 394 ~~~~~~~~a~~~~~~m~ 410 (482)
...|++++|.+.+++..
T Consensus 302 ~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 302 WQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=6.3e-09 Score=91.08 Aligned_cols=183 Identities=11% Similarity=0.093 Sum_probs=77.3
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 373 (482)
++|..+|++.+ +...+.+...|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|+.
T Consensus 81 ~~a~~i~~ral-~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 81 DEAANIYERAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444443 11122233344444444444555555555555544432211122344444444445555555555555
Q ss_pred HHhCCCccChhhHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC
Q 038748 374 MVKNENVLNHENCRAAVRV-YMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKG-IQV 451 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~ 451 (482)
+.+.+.. +...|...... +...|+.+.|.++|+.+.+. .+.+...|..++..+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4443322 12222222211 22234455555555554443 12223444445555555555555555555544332 111
Q ss_pred C--HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 038748 452 T--PFALSKLKQILIKARKEAVYEELLKKC 479 (482)
Q Consensus 452 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 479 (482)
+ ...|...+..-...|+.+.+..+.+++
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 234444444444445555555554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=1.8e-09 Score=95.88 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=146.9
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccC-CChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCh
Q 038748 216 KERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGC-DGIYETVNSLKRMMERGCNPGMTFF-KLAFEECLTGQNL 293 (482)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~ 293 (482)
..|.+++|+.+++..... .|++...|..+...+.... +++++++..+.++.... +.+...+ ......+...+..
T Consensus 85 ~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 345566777777777643 6766767766666655541 34677888887777653 2234433 3344566667888
Q ss_pred hHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038748 294 RGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNE 373 (482)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 373 (482)
++|...++.+++.. +-+...|+.+...+...|++++|...+....+. .|+ ...+...+...+..+++...+..
T Consensus 161 ~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 161 AEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp HHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHH
Confidence 88888887776221 335667777777788888777765555433331 111 11222334555666777777777
Q ss_pred HHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-
Q 038748 374 MVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVT- 452 (482)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~- 452 (482)
...... ++...+..+...+...|+.++|.+.+.+..+.. +.+...|..+...|...|++++|.+.+++.++.+ |+
T Consensus 234 ~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~ 309 (334)
T d1dcea1 234 WLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMR 309 (334)
T ss_dssp HHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGG
T ss_pred HHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--ccc
Confidence 766543 244455566667777788888888887776533 1233566777788888888888888888887765 43
Q ss_pred HHHHHHHHHHHHH
Q 038748 453 PFALSKLKQILIK 465 (482)
Q Consensus 453 ~~~~~~l~~~~~~ 465 (482)
..-|..+...+.-
T Consensus 310 ~~y~~~L~~~~~~ 322 (334)
T d1dcea1 310 AAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 3455555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1.2e-09 Score=97.14 Aligned_cols=266 Identities=6% Similarity=-0.095 Sum_probs=121.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----------hCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVV----------ADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRD 183 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 183 (482)
.+..++|+++++...+.+|.+...|+..-..+.. .|.+++|+..++...+... -+...|..+..++...
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHh
Confidence 3344677777777766666555555433322221 2234455555555544331 1333444444444433
Q ss_pred C--ChHhHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHH
Q 038748 184 G--KTIDAWQFLRVVDGRIKPDNDTYAI-LLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYE 260 (482)
Q Consensus 184 g--~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 260 (482)
+ ++++|...++......+++...+.. ....+...+.+++|+..++... ...|.+..+|+.+...+... |++++
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i---~~~p~~~~a~~~l~~~~~~~-~~~~~ 196 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI---TRNFSNYSSWHYRSCLLPQL-HPQPD 196 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT---TTTCCCHHHHHHHHHHHHHH-SCCCC
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHh-cCHHH
Confidence 3 2444554444433322333333322 2234444455555555554443 23444444444444444444 44443
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038748 261 TVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMV 340 (482)
Q Consensus 261 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 340 (482)
| ...+....+. .|+ ...+...+...+..+++...+....
T Consensus 197 A-----------------------------------~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 197 S-----------------------------------GPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp S-----------------------------------SSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred H-----------------------------------HHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3 3222222100 000 0111122333344455555555554
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCh-h
Q 038748 341 YNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLS-E 419 (482)
Q Consensus 341 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 419 (482)
.... ++...+..+...+...|+.++|...+.+..+..+. +...+..+..+|...|++++|.+.++...+. .|+. .
T Consensus 236 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~ 311 (334)
T d1dcea1 236 LGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAA 311 (334)
T ss_dssp HSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHH
T ss_pred HhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHH
Confidence 4321 23333444444555556666666666666554322 4445555666666666666666666666653 3432 3
Q ss_pred hHHHHHHHHH
Q 038748 420 TGNLLVAGLC 429 (482)
Q Consensus 420 ~~~~li~~~~ 429 (482)
.|+.|...+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.6e-08 Score=85.98 Aligned_cols=94 Identities=11% Similarity=-0.183 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEK 216 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
+|..+..+|.+.|++++|++.|++..+... -+..+|+.+..++.+.|++++|++.|++.....+.+..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 444445555555555555555555555432 2444555555555555555555555555433333344455555555555
Q ss_pred cCCHHHHHHHHHHhH
Q 038748 217 ERDVANAKKTFGEMV 231 (482)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (482)
.|++++|...|+...
T Consensus 118 ~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFY 132 (259)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1e-08 Score=87.22 Aligned_cols=96 Identities=14% Similarity=-0.051 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHH
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITL 251 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 251 (482)
+|..+..+|.+.|++++|.+.|++...-.+-+..+|..+..+|.+.|++++|+..|++... +.|++..++..+...+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH---HHhhhhhhHHHHHHHH
Confidence 3444455555556666666655554333344555555566666666666666666655543 2454555555555555
Q ss_pred HccCCChHHHHHHHHHHHHc
Q 038748 252 LKGCDGIYETVNSLKRMMER 271 (482)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~ 271 (482)
... |++++|.+.|+...+.
T Consensus 116 ~~~-g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 116 YYG-GRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHT-TCHHHHHHHHHHHHHH
T ss_pred HHH-hhHHHHHHHHHHHHhh
Confidence 555 5555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.8e-06 Score=68.98 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=46.4
Q ss_pred HHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 038748 286 ECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLW 365 (482)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 365 (482)
.+...|+++.|.+.|.++. +|+..+|..+..+|...|++++|++.|++..+.... +...|..+..++.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 3445566666666555442 344555555555666666666666666655554221 3445555555555666666
Q ss_pred HHHHHHHHHHh
Q 038748 366 EASGLFNEMVK 376 (482)
Q Consensus 366 ~a~~~~~~~~~ 376 (482)
+|...|++.+.
T Consensus 88 ~A~~~~~kAl~ 98 (192)
T d1hh8a_ 88 LAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=2.1e-06 Score=73.76 Aligned_cols=164 Identities=11% Similarity=-0.020 Sum_probs=90.2
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQY----GCKH-DVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDTYA 208 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~ 208 (482)
.....|...|++++|.+.|.+..+. +-.+ -..+|+.+..+|.+.|++++|.+.++.... .......++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3455677778888888887776552 1111 134567777777778888887777765322 1111234455
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhHHh---cCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCC-----H-H
Q 038748 209 ILLEGWEK-ERDVANAKKTFGEMVIE---VGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPG-----M-T 278 (482)
Q Consensus 209 ~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~-~ 278 (482)
.+...|.. .|++++|...+++...- .+..+....++..+...+... |++++|++.|++......... . .
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~-g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc-ChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 55555533 47777777777665421 111111223455566666666 777777777766655321111 0 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhh
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMV 304 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~ 304 (482)
.+...+..+...|+++.|.+.++...
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12233334455666666666666664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.8e-06 Score=61.56 Aligned_cols=87 Identities=7% Similarity=-0.174 Sum_probs=40.7
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhH
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDA 189 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 189 (482)
.+.+.|++++|+.+|++..+..+.+...|..+..++...|++++|+..++...+.+. .+...|..+..++...|++++|
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHH
Confidence 344444555555555554444444444444444444444444444444444444332 2344444444444444444444
Q ss_pred HHHHHHhh
Q 038748 190 WQFLRVVD 197 (482)
Q Consensus 190 ~~~~~~~~ 197 (482)
+..|+...
T Consensus 91 ~~~~~~a~ 98 (117)
T d1elwa_ 91 KRTYEEGL 98 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.4e-06 Score=74.98 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCC----HH
Q 038748 244 YDSYLITLLKGCDGIYETVNSLKRMMER----GCNPG-MTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPD----TH 314 (482)
Q Consensus 244 ~~~l~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 314 (482)
|......+... +++++|.+.|.+..+. +..++ ..+|..+..+|.+.|++++|.+.+...++-..-..+ ..
T Consensus 40 y~~aa~~y~~~-~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 40 CVQAATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 44444444444 5555555555554331 11111 234445555555555555555555544311100011 22
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038748 315 MYNMMISLYCY-SNETGAAMKLLDEMVYN----GAFP-DIQTYNILFEFLVKGRKLWEASGLFNEMVKN 377 (482)
Q Consensus 315 ~~~~li~~~~~-~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 377 (482)
++..+...|.. .|++++|++.+++..+. +..+ -..++..+...+...|++++|..+|+++...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 33333333322 35555555555544321 1111 0123444445555555555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=5.5e-06 Score=66.00 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCH
Q 038748 250 TLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNET 329 (482)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 329 (482)
.+... |+++.|++.|.++ .+|+..++..+..++...|++++|.+.|++.++.. +-+...|..+..+|.+.|++
T Consensus 14 ~~~~~-~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADK-KDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHT-TCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHC-CCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccH
Confidence 33444 6666666666543 23455555566666666666666666666665221 22355566666666666666
Q ss_pred HHHHHHHHHHHH
Q 038748 330 GAAMKLLDEMVY 341 (482)
Q Consensus 330 ~~a~~~~~~m~~ 341 (482)
++|+..|++...
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.1e-06 Score=62.23 Aligned_cols=102 Identities=13% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 038748 141 VFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDV 220 (482)
Q Consensus 141 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (482)
-...+...|++++|+..|++.++... -+...|..+..++...|++++|+..++......+.+...|..+..++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 35566777888888888888777643 36667777777788888888888877776554566777777788888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 221 ANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 221 ~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
++|+..|+... .+.|++...+..
T Consensus 88 ~~A~~~~~~a~---~~~p~~~~~~~~ 110 (117)
T d1elwa_ 88 EEAKRTYEEGL---KHEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHHH---TTCTTCHHHHHH
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHH
Confidence 88888887776 446665544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3e-06 Score=65.37 Aligned_cols=101 Identities=10% Similarity=-0.080 Sum_probs=62.0
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChH
Q 038748 108 VDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTI 187 (482)
Q Consensus 108 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 187 (482)
...|.+.|++++|+..|++..+.++.+...|..+..+|...|++++|...|+...+... -+..+|..+..++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCHH
Confidence 34555666666677766666666666666666666666666666666666666666542 24456666666666666666
Q ss_pred hHHHHHHHhhCCCCCCHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAI 209 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~ 209 (482)
+|...+++.....+-+...+..
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~ 117 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMK 117 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHH
Confidence 6666666644333334444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.2e-06 Score=64.55 Aligned_cols=105 Identities=12% Similarity=-0.040 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038748 138 FASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKE 217 (482)
Q Consensus 138 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (482)
+......|.+.|++++|+..|++..+... -+...|..+..+|...|++++|...|+...+..+.+..+|..+..+|...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 33445567788888888888888887653 36677777888888888888888888876554566777888888888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 218 RDVANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
|++++|...+++.... .|++...+..
T Consensus 92 g~~~eA~~~~~~a~~~---~p~~~~~~~~ 117 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV---KPHDKDAKMK 117 (159)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHH
Confidence 8888888888877643 5655554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=0.00048 Score=59.11 Aligned_cols=176 Identities=10% Similarity=0.034 Sum_probs=96.1
Q ss_pred CCHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 038748 99 HSPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLS 178 (482)
Q Consensus 99 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 178 (482)
||..--..+.+.|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... -+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 5556666677777788888888888876544 777778888888888877776544 25567777777
Q ss_pred HHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCCh
Q 038748 179 AICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGI 258 (482)
Q Consensus 179 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 258 (482)
.+.+......+. .+......+......++..|-..|.+++...+++... +..+.+...++.++..+++. +.
T Consensus 78 ~l~~~~e~~la~----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~---~~~~~~~~~~~~L~~lyak~--~~ 148 (336)
T d1b89a_ 78 ACVDGKEFRLAQ----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKF--KP 148 (336)
T ss_dssp HHHHTTCHHHHH----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTT--CH
T ss_pred HHHhCcHHHHHH----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH---cCCccchHHHHHHHHHHHHh--Ch
Confidence 777766554431 1122234455566677888888888888888887664 33444566677777777664 34
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 038748 259 YETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAM 303 (482)
Q Consensus 259 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 303 (482)
++.++.+...- ..-| ...++..|-+.+-+.++.-++..+
T Consensus 149 ~kl~e~l~~~s---~~y~---~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 149 QKMREHLELFW---SRVN---IPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHHHS---TTSC---HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcc---ccCC---HHHHHHHHHHcCChHHHHHHHHhc
Confidence 44444443321 1111 223445555555554444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=0.0005 Score=59.02 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLK 477 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 477 (482)
++..+-+.++..-...+++.....| +..+.+++.+.|...++++.-...++
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3444445555555555555555444 34677778888888887655544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=1e-06 Score=71.11 Aligned_cols=97 Identities=7% Similarity=-0.127 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038748 134 SLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEG 213 (482)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 213 (482)
+...+......+.+.|++++|+..|++..+... -+...|+.+..+|.+.|++++|+..|+....-.+-+..+|..+..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 333444445555555555555555555555432 2444555555555555555555555555444334445555556666
Q ss_pred HHhcCCHHHHHHHHHHhH
Q 038748 214 WEKERDVANAKKTFGEMV 231 (482)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~ 231 (482)
|.+.|++++|+..|++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=2.8e-06 Score=68.42 Aligned_cols=99 Identities=14% Similarity=-0.038 Sum_probs=62.4
Q ss_pred CCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHH
Q 038748 168 HDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSY 247 (482)
Q Consensus 168 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 247 (482)
|+...+......+.+.|++++|+..|++.....+.+...|..+..+|.+.|++++|+..|+... .+.|++..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHH
Confidence 4455555556666666666666666666443345566666666666666666666666666664 4566666666666
Q ss_pred HHHHHccCCChHHHHHHHHHHHH
Q 038748 248 LITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 248 ~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
..++... |++++|+..|++..+
T Consensus 79 g~~~~~l-~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEM-ESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHH
Confidence 6666666 666666666665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.29 E-value=0.00034 Score=58.51 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHc----cCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038748 205 DTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLK----GCDGIYETVNSLKRMMERGCNPGMTFF 280 (482)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~ 280 (482)
..+..|...+.+.+++++|+++|++..+. | +..++..|...+.. . .+...+...+......+. ....
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g----~~~A~~~Lg~~y~~G~~~~-~d~~~a~~~~~~a~~~~~---~~a~ 73 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL-K----ENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLNY---SNGC 73 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCcc-hhHHHHHHhhcccccccc---cchh
Confidence 34444444555555555555555555421 1 23344444444433 2 455555555555555441 1222
Q ss_pred HHHHHHHH----hcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 038748 281 KLAFEECL----TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----SNETGAAMKLLDEMVYNGAFPDIQTYN 352 (482)
Q Consensus 281 ~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 352 (482)
..+...+. ...+.+.|...+.... ..|. ......+...+.. ......+...+...... .+...+.
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~-~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 146 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCT 146 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhh-hhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhh
Confidence 22222222 1344555666665553 2221 1122222222221 23445555555555543 2444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 353 ILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 353 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
.+...+.. ..+...+..+++...+.| +......+...|.. ..++++|...|....+.|. ...+..|
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~L 220 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 220 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHHH
Confidence 55555554 345566666666666654 33344444444443 4577888888888777662 3444555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCC
Q 038748 425 VAGLCD----MHMLPEAVKYAKGMAEKGIQ 450 (482)
Q Consensus 425 i~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (482)
...|.. ..+.++|.++|++..+.|..
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 555543 33677788888887777743
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=1.2e-05 Score=57.52 Aligned_cols=91 Identities=7% Similarity=-0.139 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 038748 387 RAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKA 466 (482)
Q Consensus 387 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 466 (482)
..+...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..|++..+... .+...+..+..+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHC
Confidence 345666778888888888888888754 22457788888888888888888888888877653 3567788888888888
Q ss_pred ccHHHHHHHHHHH
Q 038748 467 RKEAVYEELLKKC 479 (482)
Q Consensus 467 g~~~~a~~~~~~m 479 (482)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888888875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=6.6e-06 Score=58.94 Aligned_cols=88 Identities=11% Similarity=-0.031 Sum_probs=58.1
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 038748 107 VVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKT 186 (482)
Q Consensus 107 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 186 (482)
+...+.+.|++++|+..|++....++.+..+|..+..++.+.|++++|+..|+...+... .+...+..+..+|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCH
Confidence 445556667777777777777766666666777777777777777777777776666542 2455666666666666666
Q ss_pred HhHHHHHHH
Q 038748 187 IDAWQFLRV 195 (482)
Q Consensus 187 ~~a~~~~~~ 195 (482)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=6.2e-06 Score=59.91 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---hHhHHHHHHHhhCCCC-CC-HHHHHHHHHHH
Q 038748 140 SVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGK---TIDAWQFLRVVDGRIK-PD-NDTYAILLEGW 214 (482)
Q Consensus 140 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~-~~-~~~~~~l~~~~ 214 (482)
.++..+...+++++|.+.|+.....+. .+..++..+..++.+.++ +++|+.+|+.+....+ |+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 344455555555555555555555442 244555555555554332 3345555555432111 11 22455555566
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCChh
Q 038748 215 EKERDVANAKKTFGEMVIEVGWDPDNVP 242 (482)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 242 (482)
.+.|++++|.+.|+++.+ +.|++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~---~~P~~~~ 107 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ---TEPQNNQ 107 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHH
T ss_pred HHHhhhHHHHHHHHHHHH---hCcCCHH
Confidence 666666666666666553 3554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9.5e-06 Score=58.90 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 038748 354 LFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD---PYVAIKFWKYMIENHCSDLS-ETGNLLVAGLC 429 (482)
Q Consensus 354 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 429 (482)
++..+...+++++|.+.|+...+.+.. +..++..+..++.+.++ +++|+++++.+...+..|+. .+|..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 444555555566666666655554322 44455555555554333 33455555555543322221 24445555556
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 038748 430 DMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~ 448 (482)
+.|++++|++.|+++.+..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 6666666666666665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=5.8e-05 Score=58.51 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
|+.+..+|.+.|++++|+..++..+.. .|+++.++..+..++... |++++|+..|++..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAV-NDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhc---cccchhhhHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 444444555555555555555554422 444455555555555555 555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=0.00013 Score=56.36 Aligned_cols=83 Identities=10% Similarity=-0.095 Sum_probs=61.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
+|+.+..+|.+.|++++|+..++..++.+ +.+...|..+..+|...|++++|+..|++..+.+. -+......+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 56677888889999999999999988864 23567888888889999999999999999887663 25555555555544
Q ss_pred HhccH
Q 038748 465 KARKE 469 (482)
Q Consensus 465 ~~g~~ 469 (482)
+.+..
T Consensus 142 ~~~~~ 146 (170)
T d1p5qa1 142 RIRRQ 146 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.92 E-value=0.0039 Score=51.73 Aligned_cols=146 Identities=11% Similarity=0.007 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHh----cC
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEECL----TGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCY----SN 327 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 327 (482)
.+.+.|...++.....|.. .....+...+. .......+...+.... . ..+...+..|...|.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-D---LNDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCC
T ss_pred hhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhh-c---ccccchhhhhhhhhccCCCccc
Confidence 4555666666665554421 11112222222 1233445555555443 2 2345556666666654 34
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCCh
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVK----GRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDP 399 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 399 (482)
+...+...++...+.| +......+-..+.. ..+.++|..+|+...+.| ++..+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 5666777777766654 34444444444443 467888999999888876 34555666666664 3478
Q ss_pred HHHHHHHHHHHHcCC
Q 038748 400 YVAIKFWKYMIENHC 414 (482)
Q Consensus 400 ~~a~~~~~~m~~~~~ 414 (482)
++|.+.|+...+.|.
T Consensus 235 ~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 235 KQAIENFKKGCKLGA 249 (265)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCcC
Confidence 889999988887774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00027 Score=53.47 Aligned_cols=60 Identities=12% Similarity=-0.124 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 172 ALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 172 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
+|+.+..+|.+.|++++|++.++......+.+..+|..+..++...|++++|...|+...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555433334455555555555555555555555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.89 E-value=0.0002 Score=55.21 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH
Q 038748 207 YAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME 270 (482)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~ 270 (482)
|+.+..+|.+.|++++|+..++.... +.|++..+|..+..++... |++++|...|.+..+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~~~~~~~l-~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLM-NEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhh---cccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 34444455555555555555555442 2444455555555555555 555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00013 Score=53.28 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-CC-----hhhHHHHHH
Q 038748 353 ILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCS-DL-----SETGNLLVA 426 (482)
Q Consensus 353 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-----~~~~~~li~ 426 (482)
.+-..+.+.|++++|...|.+.++.+.. +...+..+..+|.+.|++++|.+.++.+++.... +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 3445566667777777777776665433 5556666677777777777777777766642100 00 124555666
Q ss_pred HHHhcCChhHHHHHHHHHHHcC
Q 038748 427 GLCDMHMLPEAVKYAKGMAEKG 448 (482)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~ 448 (482)
.+...+++++|++.|++.....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC
Confidence 6677777888888877766543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00053 Score=51.77 Aligned_cols=74 Identities=12% Similarity=-0.072 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 038748 384 ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKL 459 (482)
Q Consensus 384 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 459 (482)
.+|+.+..+|.+.|++++|++.++..++.+ +.+...|..+..+|...|++++|+..|++..+.+.. +..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 467778888999999999999999998864 346688999999999999999999999999877622 34444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00015 Score=56.52 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCCHHH
Q 038748 137 TFASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPDNDT 206 (482)
Q Consensus 137 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ 206 (482)
.+..+..++...|++++|+..++.+.+... -+...|..++.++.+.|+.++|++.|+++.. |+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 455556666666666666666666655432 2555566666666666666666666655422 55565544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00038 Score=53.65 Aligned_cols=88 Identities=10% Similarity=-0.063 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038748 382 NHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQ 461 (482)
Q Consensus 382 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 461 (482)
....|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++|+..|++..+... .+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34456777888999999999999999998854 23457888899999999999999999999988753 35556666655
Q ss_pred HHHHhccHHH
Q 038748 462 ILIKARKEAV 471 (482)
Q Consensus 462 ~~~~~g~~~~ 471 (482)
+..+.....+
T Consensus 154 ~~~~l~~~~~ 163 (169)
T d1ihga1 154 VKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00024 Score=54.80 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 173 LNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 173 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
|..+..++.+.|++++|+..++....-.+.+..+|..+..+|...|++++|+..|+...
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 33344444444444444444444433333444444444444444444444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0001 Score=53.96 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=33.9
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHh
Q 038748 106 LVVDLLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQ 163 (482)
Q Consensus 106 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 163 (482)
.+...+.+.|++++|+..|++..+.++.+..+|..+..+|.+.|++++|+..++.+++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3444555556666666666666655555555566666666666666666666655544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00061 Score=52.36 Aligned_cols=93 Identities=10% Similarity=-0.095 Sum_probs=64.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038748 385 NCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILI 464 (482)
Q Consensus 385 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 464 (482)
+|+.+..+|.+.|++++|+..++..++.+ +.+...|..+..+|...|++++|...|+++..... .+......+-....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45667778888999999999999988764 34557888888899999999999999999887652 34455555444444
Q ss_pred HhccH-HHHHHHHHHH
Q 038748 465 KARKE-AVYEELLKKC 479 (482)
Q Consensus 465 ~~g~~-~~a~~~~~~m 479 (482)
+.+.. +...+++.+|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 44433 2333444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=3.4e-05 Score=71.48 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=113.4
Q ss_pred hHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHH
Q 038748 188 DAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKR 267 (482)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 267 (482)
+|.+.|++...--+.....+..+..+|...|++++| |+++... .|+....++ +...+.. ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~--~e~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKK--VEQDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHT--HHHHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHh--HHHHHHH-HHHHHHHHHHHH
Confidence 466666664432122344556666777777777765 5555432 332111211 1111112 234556666766
Q ss_pred HHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038748 268 MMERGCNPGMTFFKLAFEEC--LTGQNLRGAEFIWGAMVGRIGFRP-DTHMYNMMISLYCYSNETGAAMKLLDEMVYNGA 344 (482)
Q Consensus 268 m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 344 (482)
..+....++..-....+..+ ...+.++.+...+.... ++.| +...+..+...+.+.|+.++|...+......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 149 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-- 149 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--
Confidence 66544333332222222221 22344555544444332 3333 3455666777777888888888777665542
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038748 345 FPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLL 424 (482)
Q Consensus 345 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 424 (482)
. ....+..+...+...|++++|...|++..+..+. +...|+.+...|...|+..+|...|.+..... .|-..++..|
T Consensus 150 ~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 150 I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 1 1245666777788888888888888888876433 55678888888888888888888888887654 3555677777
Q ss_pred HHHHHhcC
Q 038748 425 VAGLCDMH 432 (482)
Q Consensus 425 i~~~~~~g 432 (482)
...|.+..
T Consensus 227 ~~~~~~~~ 234 (497)
T d1ya0a1 227 QKALSKAL 234 (497)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 76665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=3.3e-05 Score=71.59 Aligned_cols=118 Identities=11% Similarity=-0.070 Sum_probs=47.1
Q ss_pred CCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHH
Q 038748 235 GWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTH 314 (482)
Q Consensus 235 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (482)
++.|++...+..+...+.+. ++.++|...+....... ...++..+...+...|++++|...|.+.++.. +-+..
T Consensus 114 ~l~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~ 187 (497)
T d1ya0a1 114 NVDLPCRVKSSQLGIISNKQ-THTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQ 187 (497)
T ss_dssp ------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSH
T ss_pred CCChhhHHHHHHhHHHHHhC-CCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchH
Confidence 44454555555555555555 66666655554443321 12344555566666666666666666665221 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038748 315 MYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQTYNILFEFLV 359 (482)
Q Consensus 315 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 359 (482)
.|+.|...|...|+..+|+..|.+..... .|-...+..|...+.
T Consensus 188 ~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 188 PYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 66666666666666666666666665542 234445555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00097 Score=51.64 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038748 139 ASVFSSYVVADRVKDAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKER 218 (482)
Q Consensus 139 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
..........|++++|.+.|....... ++... ......+.+...-..+. ......+..+...+.+.|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~---~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALV---EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHCC
Confidence 334456677788888888888777641 11100 00001011111111111 112345677778888888
Q ss_pred CHHHHHHHHHHhHHhcCCCCCChhhHHHHHHHHHccCCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038748 219 DVANAKKTFGEMVIEVGWDPDNVPAYDSYLITLLKGCDGIYETVNSLKRMME-----RGCNPGMTF 279 (482)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 279 (482)
++++|+..++.+.. ..|.+...|..++.++... |+..+|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~---~~P~~e~~~~~l~~al~~~-Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTF---EHPYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHH---hCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888864 4777778888888888888 888888888887643 467776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.56 E-value=0.00019 Score=59.74 Aligned_cols=122 Identities=6% Similarity=-0.146 Sum_probs=86.0
Q ss_pred HHhhCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCChHh
Q 038748 110 LLGKNCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADRVKDAITTFDVMEQYGCKHD-VFALNSLLSAICRDGKTID 188 (482)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~ 188 (482)
-..+.|++++|+..+++..+..+.+...+..+...++..|++++|.+.|+...+.. |+ ...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 34568999999999999999999999999999999999999999999999998864 43 3444444444433333332
Q ss_pred HHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 038748 189 AWQFLRVV-DGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIE 233 (482)
Q Consensus 189 a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (482)
+..-...- ..+.+++...+......+...|+.++|.+.++++...
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111110 0022233444555667788899999999999988754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00018 Score=53.88 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhCC
Q 038748 114 NCLFDAMWDAIKSMKKENVLSLATFASVFSSYVVADR 150 (482)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 150 (482)
.+.+++|+..|+...+..+.+..++..+..++...++
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~ 46 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ 46 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhh
Confidence 3446667777777766666666666666666654433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=0.00012 Score=61.05 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=22.3
Q ss_pred cCChHhHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 183 DGKTIDAWQFLRVVDGRIKPDNDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
.|++++|+..+++..+..+.|...+..+...|+..|++++|...|+...
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444333334444444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.26 E-value=0.00069 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCccChhhHHHHHHHHhc
Q 038748 364 LWEASGLFNEMVKNENVLNHENCRAAVRVYMD 395 (482)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (482)
+++|...|++.++.++. +..+|..+..+|..
T Consensus 57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHH
Confidence 34455555555543322 33444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0028 Score=47.71 Aligned_cols=99 Identities=10% Similarity=-0.092 Sum_probs=59.4
Q ss_pred hhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCc-cC----------hhhHHHHHHHHhcCCChHHHHHHHHHHHHc---
Q 038748 349 QTYNIL--FEFLVKGRKLWEASGLFNEMVKNENV-LN----------HENCRAAVRVYMDSDDPYVAIKFWKYMIEN--- 412 (482)
Q Consensus 349 ~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~-~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 412 (482)
..|..+ ...+...|++++|+..|++.++.... |+ ...|+.+..+|.+.|++++|.+.+++.++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 33455667888888888877764211 11 245666777777777777777777776532
Q ss_pred --CCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038748 413 --HCSDLS-----ETGNLLVAGLCDMHMLPEAVKYAKGMAEK 447 (482)
Q Consensus 413 --~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (482)
...++. ..|+.+..+|...|++++|+..|++..+.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111211 23455566677777777777777776643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0072 Score=45.35 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=52.7
Q ss_pred HHHHHhhCChhhHHHHHHHHHhcCC-CCC----------HhhHHHHHHHHHhcCChHhHHHHHHHhhC------CCCCC-
Q 038748 142 FSSYVVADRVKDAITTFDVMEQYGC-KHD----------VFALNSLLSAICRDGKTIDAWQFLRVVDG------RIKPD- 203 (482)
Q Consensus 142 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~- 203 (482)
...+.+.|++++|++.|++..+... .|+ ..+|+.+..+|...|++++|.+.+++... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777665311 011 24566667777777777777766655321 11111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 038748 204 ----NDTYAILLEGWEKERDVANAKKTFGEMV 231 (482)
Q Consensus 204 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (482)
..+++.+..+|...|++++|...|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566677777777777777777655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0049 Score=41.70 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHhHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCChhhHHH
Q 038748 174 NSLLSAICRDGKTIDAWQFLRVVDG-------RIKPDNDTYAILLEGWEKERDVANAKKTFGEMVIEVGWDPDNVPAYDS 246 (482)
Q Consensus 174 ~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 246 (482)
-.+...+.+.|++++|...|++... .......++..+..+|.+.|++++|+..++++.+ +.|++..+++.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~---l~P~~~~a~~N 85 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---LDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH---hCcCCHHHHHH
Confidence 3445555556666666665555311 0111245666777777777777777777777763 36665555544
Q ss_pred H
Q 038748 247 Y 247 (482)
Q Consensus 247 l 247 (482)
+
T Consensus 86 l 86 (95)
T d1tjca_ 86 L 86 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0056 Score=41.38 Aligned_cols=66 Identities=2% Similarity=-0.124 Sum_probs=40.3
Q ss_pred CHhhHHHHHHHHhhCCCcHHHHHHHHHHHhcCC------C-CHHHHHHHHHHHHhhCChhhHHHHHHHHHhcC
Q 038748 100 SPYAWNLVVDLLGKNCLFDAMWDAIKSMKKENV------L-SLATFASVFSSYVVADRVKDAITTFDVMEQYG 165 (482)
Q Consensus 100 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 165 (482)
+...+-.+...+.+.|+++.|+..|++..+..+ + ...++..+..++.+.|++++|+..++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344455566666677777777777766654321 1 14556666666777777777777777666643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.68 E-value=0.18 Score=35.96 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhc----CCChHHHH
Q 038748 328 ETGAAMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMD----SDDPYVAI 403 (482)
Q Consensus 328 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 403 (482)
++++|++.|.+..+.|.. .....+. .....+.++|..++++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666666555422 1121221 123345667777777666655 23333344444432 34567777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 038748 404 KFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEAVKYAKGMAEKGI 449 (482)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 449 (482)
++|+...+.|. ......|...|.. ..+.++|.++|++..+.|.
T Consensus 80 ~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 77777776653 2233334444433 3466777777777766663
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.43 E-value=0.27 Score=35.03 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHH
Q 038748 362 RKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNLLVAGLCD----MHMLPEA 437 (482)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 437 (482)
.++++|..+|++..+.|. ...+..|. .....+.++|.+.++...+.|. ......|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHH
Confidence 367899999999888763 22333333 3445789999999999988774 3444555555543 4578999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHh
Q 038748 438 VKYAKGMAEKGIQVTPFALSKLKQILIK----ARKEAVYEELLKKCK 480 (482)
Q Consensus 438 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~ 480 (482)
.++|++..+.| ++.....|...|.. ..+.++|.+++++.-
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 99999999887 45555556666655 457899999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.94 Score=40.05 Aligned_cols=202 Identities=5% Similarity=-0.063 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHH
Q 038748 256 DGIYETVNSLKRMMERGCNPGMTFFKLAFEE----CLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGA 331 (482)
Q Consensus 256 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 331 (482)
.+.+.+...+......... +......+-.. ....+..+.+...+.... .. ..+.......+......+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MR--SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc-cc--ccchHHHHHHHHHHHHcCChHH
Confidence 4667777777776554322 22222222222 223455666766666654 22 2344444455555666778888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCC-hHHHHHHHHHHH
Q 038748 332 AMKLLDEMVYNGAFPDIQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDD-PYVAIKFWKYMI 410 (482)
Q Consensus 332 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 410 (482)
+...+..|.... .-...-..-+..++...|+.+.|..+|..+... ++ |-.++.+- +.|. +.- .
T Consensus 304 ~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~~--------~ 367 (450)
T d1qsaa1 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYEL--------K 367 (450)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCCC--------C
T ss_pred HHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCCC--------C
Confidence 888777764321 112333455667778888888888888877542 22 33333221 1121 100 0
Q ss_pred HcCCCCC-hhh-----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHh
Q 038748 411 ENHCSDL-SET-----GNLLVAGLCDMHMLPEAVKYAKGMAEKGIQVTPFALSKLKQILIKARKEAVYEELLKKCK 480 (482)
Q Consensus 411 ~~~~~p~-~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 480 (482)
...+..+ ... -..-+..+...|+...|...+..+.+. .+......+.....+.|.++.|+....+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0000000 011 112345677889999999999888754 356677788888999999999998876643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=1.1 Score=39.69 Aligned_cols=360 Identities=11% Similarity=0.069 Sum_probs=197.9
Q ss_pred CCccHHHHhhhcCCCCCHHHHHH-HHH--hhcCCchhHhHHhhhhhcCCCCCCCHhhHHHHHHHHhhCCCcHHHHHHHHH
Q 038748 50 PSPTVEDVLDKTLIRVSQETVEQ-VLK--FSYSHPGPAVKFFRWSAYQLNDKHSPYAWNLVVDLLGKNCLFDAMWDAIKS 126 (482)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~~~-ll~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 126 (482)
+..++...+.+.+..|-...+.. .+. ...++++..+.++. ..+.+...-.....+....|+.+.|...+..
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~ 127 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33456666666655444433321 122 22345544443332 3445677677788888889998888888887
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhCChhhHH--HHHHHHHhcC-----------CCCC-HhhHHHHHHHHHhcCChHhHHHH
Q 038748 127 MKKENVLSLATFASVFSSYVVADRVKDAI--TTFDVMEQYG-----------CKHD-VFALNSLLSAICRDGKTIDAWQF 192 (482)
Q Consensus 127 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~--~~~~~~~~~~-----------~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 192 (482)
+-..|......+..+...+...|.+.... +-+..+...| +.++ .......+.... +...+...
T Consensus 128 lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~ 204 (450)
T d1qsaa1 128 LWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTF 204 (450)
T ss_dssp HHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHH
Confidence 77666544445555555555544332211 1122221111 1111 112222222221 12222222
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhHHhcCCCCCChhhHHHHHH-HHHccCCChHHHHHHHHHHH
Q 038748 193 LRVVDGRIKPDNDTYAILLEGWEK--ERDVANAKKTFGEMVIEVGWDPDNVPAYDSYLI-TLLKGCDGIYETVNSLKRMM 269 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~~a~~~~~~m~ 269 (482)
... ...+......+..++.+ ..+.+.|..++..........++........+. .+... +..+.+...+....
T Consensus 205 ~~~----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~a~~~~~~~~ 279 (450)
T d1qsaa1 205 ART----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN-DVTDEQAKWRDDAI 279 (450)
T ss_dssp HHH----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST-TCCHHHHHHHHHHH
T ss_pred Hhc----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHc-CchHHHHHHHHhhc
Confidence 111 22334433334444433 357888888888887553443322222222222 22233 66788888887776
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 038748 270 ERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAFPDIQ 349 (482)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 349 (482)
..+. +.......+......+++..+...+..+. . .......-..-+..++...|+.+.|...|...... +
T Consensus 280 ~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~-~-~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~--- 349 (450)
T d1qsaa1 280 MRSQ--STSLIERRVRMALGTGDRRGLNTWLARLP-M-EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--- 349 (450)
T ss_dssp HTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-T-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---
T ss_pred cccc--chHHHHHHHHHHHHcCChHHHHHHHHhcC-c-ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C---
Confidence 6543 44444455666677899999999999884 2 22233455566778899999999999999988652 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--ccCh----hhHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 038748 350 TYNILFEFLVKGRKLWEASGLFNEMVKNEN--VLNH----ENCRAAVRVYMDSDDPYVAIKFWKYMIENHCSDLSETGNL 423 (482)
Q Consensus 350 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 423 (482)
+|..++.+- +.|..-. +....+ .+.. ..-..-+..+...|....|...|..+... . +......
T Consensus 350 ~fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~ 418 (450)
T d1qsaa1 350 GFYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQ 418 (450)
T ss_dssp SHHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHH
T ss_pred ChHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHH
Confidence 354444332 2332100 000000 0000 01113456677889999999999988753 2 3445667
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 038748 424 LVAGLCDMHMLPEAVKYAKGM 444 (482)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m 444 (482)
+.....+.|.++.|+....+.
T Consensus 419 la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 777788999999999887765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.63 E-value=0.41 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038748 279 FFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMISLYCYSNETGAAMKLLDEMVYNGAF 345 (482)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 345 (482)
.+...++.+...|+-+...+++..+.+ +-++++...-.+..+|.+.|...++-+++.+.-+.|++
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344445555555555555555555432 22445555555555666666666666666555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.43 E-value=0.46 Score=32.78 Aligned_cols=66 Identities=17% Similarity=0.031 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038748 348 IQTYNILFEFLVKGRKLWEASGLFNEMVKNENVLNHENCRAAVRVYMDSDDPYVAIKFWKYMIENHC 414 (482)
Q Consensus 348 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 414 (482)
...++..+..+...|+-+.-.++++++.+. -++++.....+..+|.+.|+..++.+++.+.-++|+
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344555566666666666666666666553 345566666666677777777777777766666665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.63 E-value=0.18 Score=32.93 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChHhHHHHHHHhhCCCCCCHHHHHHH
Q 038748 153 DAITTFDVMEQYGCKHDVFALNSLLSAICRDGKTIDAWQFLRVVDGRIKPDNDTYAIL 210 (482)
Q Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 210 (482)
++.+-++.+....+.|++....+.+++|-+.+++..|..+|+.++....++..+|..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi 81 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 81 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4444455555555556666666666666666666666666655544333333344433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.83 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHhC-CCccChhhHHHHHHHHhcC---CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038748 372 NEMVKN-ENVLNHENCRAAVRVYMDS---DDPYVAIKFWKYMIENHCSDLS-ETGNLLVAGLCDMHMLPEAVKYAKGMAE 446 (482)
Q Consensus 372 ~~~~~~-~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (482)
+...+. +..++..+--.+..++++. .++++++.+++++.+.+ +.+. ..+..|..+|.+.|++++|.++++.+.+
T Consensus 23 ~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 334444 2334444544455555554 34678888998888654 2232 4666777888999999999999999987
Q ss_pred cC
Q 038748 447 KG 448 (482)
Q Consensus 447 ~~ 448 (482)
..
T Consensus 102 ie 103 (124)
T d2pqrb1 102 HE 103 (124)
T ss_dssp HC
T ss_pred cC
Confidence 65
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.93 Score=31.36 Aligned_cols=67 Identities=9% Similarity=-0.198 Sum_probs=47.5
Q ss_pred CCCHhhHHHHHHHHhhCC---CcHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhCChhhHHHHHHHHHhc
Q 038748 98 KHSPYAWNLVVDLLGKNC---LFDAMWDAIKSMKKENVLS-LATFASVFSSYVVADRVKDAITTFDVMEQY 164 (482)
Q Consensus 98 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 164 (482)
.+++.+--....+++++. +.++++.+|+++...++.. ...+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 355556555666666654 3567888888888766544 356667777788888888888888888875
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.21 E-value=0.94 Score=29.51 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHccCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcccCCCCCHHHHHHHH
Q 038748 249 ITLLKGCD-GIYETVNSLKRMMERGCNPGMTFFKLAFEECLTGQNLRGAEFIWGAMVGRIGFRPDTHMYNMMI 320 (482)
Q Consensus 249 ~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 320 (482)
..++...+ +.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+. ..+...|..++
T Consensus 12 ~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yil 82 (105)
T d1v54e_ 12 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 82 (105)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHH
Confidence 33444423 555666777777777788888888888888888888888888888874332 33344555544
|