Citrus Sinensis ID: 038758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEHHHHHHHHccccccHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHEHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHcc
Coil and Loop (DISEMBL)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIdkgvrpdhfvcpkvykacselkdyrvgkdVYDYMISIKFegnacvkrpLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKvshckfskikqKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIqtdmqpntisLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFvicscsvfnqlstRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLaalpqglgtgSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Flexible Loop (DISEMBL)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYkacselkdyrvGKDVYDYMISIKfegnacvkrPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLmphknlvswnvmisvyg
Low Complexity Region (SEG)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Disordered region (IsUnstruct)
***GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY*
Disordered Region (DISOPRED)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Disordered Region (DISEMBL)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Disordered Region (DISPRO)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q9LN01	741	Pentatricopeptide repeat-	yes	no	0.892	0.426	0.285	2e-43
Q9LW63	715	Putative pentatricopeptid	no	no	0.875	0.433	0.309	3e-39
Q9LNU6	760	Pentatricopeptide repeat-	no	no	0.974	0.453	0.263	3e-39
O04659	691	Pentatricopeptide repeat-	no	no	0.822	0.421	0.304	6e-39
Q9C507	787	Putative pentatricopeptid	no	no	0.898	0.404	0.274	2e-38
O64705	621	Pentatricopeptide repeat-	no	no	0.895	0.510	0.259	2e-38
O82380	738	Pentatricopeptide repeat-	no	no	0.867	0.415	0.283	6e-37
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.895	0.456	0.248	2e-36
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.906	0.360	0.273	3e-36
Q0WNP3	617	Pentatricopeptide repeat-	no	no	0.901	0.517	0.284	5e-36

>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 188/343 (54%), Gaps = 27/343 (7%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W +M   + +       + L+  MI  G+ P+ +  P V K+C++ K ++ G+ ++ +++
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
            +  + +  V   L+ ++++ GR+E    +F++   +D +   +LI  YA   Y++ +  
Sbjct: 162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F +I  KD+VSWNAM++GYA  G  +E   L  +M  ++T+++P+  ++  V++ACAQ 
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 279

Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
             ++LG+ +H ++  H            I L + CG +  +C +F +L  +DV+ WN++I
Sbjct: 280 GSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
             +       +AL L ++++ +   PN VT++S+LPAC  L A+              +G
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399

Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
           +   S +  +LIDMY +CG I+ + ++F  + HK+L SWN MI
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 179/352 (50%), Gaps = 42/352 (11%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W S++  +     + + +  F  M   G  PDH V P V K+C+ + D R G+ V+ +++
Sbjct: 73  WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132

Query: 93  SIKFEGNACVKRPLLDLFIKCGRM--EITSG-LFEEM--------DQDFLVNNSLIDF-Y 140
            +  + +      L++++ K   M  +I+ G +F+EM        D+D      ++ F  
Sbjct: 133 RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192

Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
              R +      F  + +KD+VS+N ++AGYA  G  E+   ++ EM    TD++P++ +
Sbjct: 193 DSVRRV------FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT--TDLKPDSFT 244

Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLS 249
           LS VL   ++   V  GK IHGYV+R  I      G  +            S  VF++L 
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------ 303
            RD + WNS+++ +V++G+  +AL L R ++ A VKP  V   SV+PAC  LA       
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 304 -----LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
                L  G G+  F+ +AL+DMY +CG I+ +RKIF  M   + VSW  +I
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 204/432 (47%), Gaps = 87/432 (20%)

Query: 6   QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
           Q HA ++  G +   ++ ++L+  + N+                     +S++       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 45  YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
            + + + +F  M   G+ PD  V P ++K C+EL  ++VGK ++        + +A V+ 
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-----VSHCKFSKIKQ 158
            +  ++++CGRM     +F+ M D+D +  ++L+  YA+   L+     +S  + S I +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI-E 214

Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
            ++VSWN +L+G+   G+ +E   +  ++  +     P+ +++S VL +    + + +G+
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHL--GFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD--------------- 252
            IHGYV++             I +    G V    S+FNQ    +               
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
                               VV W SII+   ++G+ ++AL+L R++ VA VKPN VTI 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 293 SVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
           S+LPAC  +AAL  G  T  F           V +ALIDMY +CG I  S+ +F +MP K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 342 NLVSWNVMISVY 353
           NLV WN +++ +
Sbjct: 453 NLVCWNSLMNGF 464

Arabidopsis thaliana (taxid: 3702)

>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2

 Score =  161 bits (408), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 54/345 (15%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +W +++  +   G  E+ + LF  M   G  P+         ACS L     GK+++   
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIH--- 231

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
                    CVK+                    E+D+   VN++L+D Y KC  L+V+  
Sbjct: 232 -------RKCVKKGF------------------ELDE--YVNSALVDMYGKCDCLEVARE 264

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F K+ +K LV+WN+M+ GY   G  +    +L+ M  I    +P+  +L+ +L AC++ 
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM--IIEGTRPSQTTLTSILMACSRS 322

Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
           + +  GK IHGYV+R             I L   CG    + +VF++        WN +I
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
           S+++  G    A+++   ++   VKP+ VT  SVLPAC +LAAL +G           L 
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442

Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
           T   + +AL+DMY +CG  +++ +IF  +P K++VSW VMIS YG
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYG 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 75/393 (19%)

Query: 1   MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
           + +G +VH  +I  GV+  A + + LL             +VF          W++++  
Sbjct: 117 LSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSS 176

Query: 40  YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
               G   + + +F  M+D GV PD      V + C+EL   R+ + V+           
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHG---------- 226

Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
                            +IT  +F   D D  + NSL+  Y+KC  L  S   F KI +K
Sbjct: 227 -----------------QITRKMF---DLDETLCNSLLTMYSKCGDLLSSERIFEKIAKK 266

Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
           + VSW AM++ Y  G F E+   L    EMI++ ++PN ++L  VL++C  +  ++ GK+
Sbjct: 267 NAVSWTAMISSYNRGEFSEKA--LRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKS 324

Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
           +HG+ +R              + L   CG +    +V   +S R++V WNS+IS +   G
Sbjct: 325 VHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384

Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWNA 317
            V+ AL L R ++   +KP+  T+ S + AC     +P G            +  FV N+
Sbjct: 385 MVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNS 444

Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
           LIDMY + G++  +  +F  + H+++V+WN M+
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSML 477

Arabidopsis thaliana (taxid: 3702)

>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 185/389 (47%), Gaps = 72/389 (18%)

Query: 6   QVHAHLIVCGVELCAFLGSQLLEVF-CNWTSMM-----------------GMYNVLGYYE 47
           Q+ A +++  VE   FL  + +E+   N++S +                 G+ N    +E
Sbjct: 55  QIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 114

Query: 48  EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
             ++L+  M   G++PD F    V+ AC++L++  VG+ V+  +  +  E          
Sbjct: 115 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLE---------- 164

Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
                               +D  +N+SLI  YAKC  +  +   F +I ++D VSWN+M
Sbjct: 165 --------------------RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSM 204

Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
           ++GY+  G+ ++  +L  +ME  +   +P+  +L  +L AC+ +  ++ G+ +    +  
Sbjct: 205 ISGYSEAGYAKDAMDLFRKME--EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 262

Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
            I LST            CG +  +  VFNQ+  +D V W ++I+ + ++G+  +A  L 
Sbjct: 263 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 322

Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRC 325
            ++    V P+  T+ +VL AC  + AL  G           L    +V   L+DMYG+C
Sbjct: 323 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 382

Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
           G ++++ ++F  MP KN  +WN MI+ Y 
Sbjct: 383 GRVEEALRVFEAMPVKNEATWNAMITAYA 411

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 25/332 (7%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +W SM+  +   G  ++ + LF  M  + V+  H     V  AC+++++   G+ V  Y+
Sbjct: 199 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI 258

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
              +   N  +   +LD++ KCG +E    LF+ M++ D +   +++D YA     + + 
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 318

Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
              + + QKD+V+WNA+++ Y   G   E   +  E+++ Q +M+ N I+L   L+ACAQ
Sbjct: 319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL-QKNMKLNQITLVSTLSACAQ 377

Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
           V  ++LG+ IH Y+ +H I           H+ + CG +  S  VFN +  RDV VW+++
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437

Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
           I      G   +A+D+   +  ANVKPN VT  +V  AC     + +            G
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497

Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
           +      +  ++D+ GR G ++K+ K    MP
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 193/394 (48%), Gaps = 77/394 (19%)

Query: 6   QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
           Q+HA L+V G++   FL ++L+             +VF +        W +++  Y+   
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 45  YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
           ++++ + ++  M    V PD F  P + KACS L   ++G+ V+  +  + F        
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-------- 150

Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLV 162
                                 D D  V N LI  YAKCR L  +   F    + ++ +V
Sbjct: 151 ----------------------DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
           SW A+++ YA  G   E   +  +M   + D++P+ ++L  VL A   ++ +K G++IH 
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMR--KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246

Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
            V++  + +              CG V  +  +F+++ + ++++WN++IS + ++G   +
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306

Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGS-----FVWNALID 320
           A+D+  ++I  +V+P+T++I S + AC ++ +L Q       +G        F+ +ALID
Sbjct: 307 AIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALID 366

Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
           M+ +CG+++ +R +F     +++V W+ MI  YG
Sbjct: 367 MFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYG 400

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 85/406 (20%)

Query: 3   LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---------------- 46
           +G QVHA+ +  G EL +F+ + L+ ++     +     +LG +                
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 47  --EEIVN-LFYL--MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
             E+++  L YL  M+ +GV PD F    V  ACS L+  R GK+++ Y +         
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL--------- 329

Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
                     K G           +D++  V ++L+D Y  C+ +      F  +  + +
Sbjct: 330 ----------KNG----------SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369

Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
             WNAM+AGY+     +E   L   ME     +  N+ +++GV+ AC +       +AIH
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
           G+V++  +            + +  G +  +  +F ++  RD+V WN++I+ +V S    
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488

Query: 271 DALDLL-----------RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
           DAL LL           +     ++KPN++T++++LP+C  L+AL +G           L
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548

Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
            T   V +AL+DMY +CG +Q SRK+F  +P KN+++WNV+I  YG
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1

 Score =  152 bits (383), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 180/397 (45%), Gaps = 78/397 (19%)

Query: 2   ELGIQVHAHLIVCGV-------------ELCAFLGSQLLEV-------FCNWTSMMGMYN 41
           ELG QVH +++  GV               C  L S L            +WT+++   +
Sbjct: 201 ELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACS 260

Query: 42  VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
             G+  + + +F  M++    P+ F    + KACSE K  R G+ V+  ++         
Sbjct: 261 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVK-------- 312

Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
                        RM         +  D  V  SL+D YAKC   ++S C+  F  +  +
Sbjct: 313 -------------RM---------IKTDVFVGTSLMDMYAKCG--EISDCRKVFDGMSNR 348

Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
           + V+W +++A +A  GF EE  +L   M+  +  +  N +++  +L AC  V  + LGK 
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLFRIMK--RRHLIANNLTVVSILRACGSVGALLLGKE 406

Query: 220 IHGYVLRHHIHLSTACG----FVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
           +H  ++++ I  +   G    ++ C C       +V  QL +RDVV W ++IS     G 
Sbjct: 407 LHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGH 466

Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
             +ALD L+++I   V+PN  T  S L AC    +L  G    S           FV +A
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526

Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
           LI MY +CG + ++ ++F  MP KNLVSW  MI  Y 
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYA 563

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
296083884	729	unnamed protein product [Vitis vinifera]	0.909	0.441	0.412	8e-83
147767942	929	hypothetical protein VITISV_016435 [Viti	0.830	0.316	0.457	1e-79
225435852	972	PREDICTED: pentatricopeptide repeat-cont	0.830	0.302	0.457	2e-79
347954542	673	organelle transcript processing 82, part	0.892	0.469	0.309	1e-45
147854092	886	hypothetical protein VITISV_041405 [Viti	0.824	0.329	0.312	8e-43
225436612	694	PREDICTED: pentatricopeptide repeat-cont	0.822	0.419	0.313	9e-43
148909481	795	unknown [Picea sitchensis]	0.816	0.363	0.309	1e-42
347954546	695	organelle transcript processing 82, part	0.838	0.427	0.299	1e-42
347954522	710	organelle transcript processing 82, part	0.838	0.418	0.299	1e-42
347954528	666	organelle transcript processing 82, part	0.892	0.474	0.285	2e-42

>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 182/441 (41%), Positives = 245/441 (55%), Gaps = 119/441 (26%)

Query: 1   MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
           + LG QVHA L+V GV++C FLGS+LLEV+C                     +WT++M M
Sbjct: 26  LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 85

Query: 40  YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
           Y  LG YEE + LFYLM+++GVRPDHFV PKV+KACSELK+YRVGKDVYDYM+SI FEGN
Sbjct: 86  YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 145

Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
           +CVK  +LD+FIKCGRM+I    FEE                              I+ K
Sbjct: 146 SCVKGSILDMFIKCGRMDIARRFFEE------------------------------IEFK 175

Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
           D+  WN M++GY   G  ++  N+    +M+   ++PN+I+++  ++AC  +  ++ G+ 
Sbjct: 176 DVFMWNIMVSGYTSKGEFKKALNVF--RKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233

Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVW----------- 256
           IHGY ++              +     C  V  +   F  +   D+V W           
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 257 --------------------------------NSIISAFVRSGQVVDALDLLRDVIVANV 284
                                           NSIISA  +SG+ V+ALDLLR++ ++NV
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 285 KPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRK 333
           + NTVT+VS LPAC KLAAL Q           GL T +F+ N+LIDMYGRCG+IQKSR+
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 334 IFVLMPHKNLVSWNVMISVYG 354
           IF LMP ++LVSWNVMISVYG
Sbjct: 414 IFDLMPQRDLVSWNVMISVYG 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/378 (45%), Positives = 222/378 (58%), Gaps = 84/378 (22%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +WT+++      GY  E +++F  M+ +GV+P+         AC+ L   R G++++ Y 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
           I +                             EE+D D LV NSL+D+YAKCR ++V+  
Sbjct: 389 IKV-----------------------------EELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTD---------------- 193
           KF  IKQ DLVSWNAMLAGYAL G  EE   LL EM+   I+ D                
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 194 ---------------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238
                          M PNT ++SG LAAC QV+ +KLGK IHGYVLR+HI LST  G  
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539

Query: 239 ICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
           + S           CSVF++LSTRDVVVWNSIISA  +SG+ V+ALDLLR++ ++NV+ N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599

Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
           TVT+VS LPAC KLAAL Q           GL T +F+ N+LIDMYGRCG+IQKSR+IF 
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659

Query: 337 LMPHKNLVSWNVMISVYG 354
           LMP ++LVSWNVMISVYG
Sbjct: 660 LMPQRDLVSWNVMISVYG 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/378 (45%), Positives = 222/378 (58%), Gaps = 84/378 (22%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +WT+++      GY  E +++F  M+ +GV+P+         AC+ L   R G++++ Y 
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
           I +                             EE+D D LV NSL+D+YAKCR ++V+  
Sbjct: 389 IKV-----------------------------EELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTD---------------- 193
           KF  IKQ DLVSWNAMLAGYAL G  EE   LL EM+   I+ D                
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 194 ---------------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238
                          M PNT ++SG LAAC QV+ +KLGK IHGYVLR+HI LST  G  
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539

Query: 239 ICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
           + S           CSVF++LSTRDVVVWNSIISA  +SG+ V+ALDLLR++ ++NV+ N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599

Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
           TVT+VS LPAC KLAAL Q           GL T +F+ N+LIDMYGRCG+IQKSR+IF 
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659

Query: 337 LMPHKNLVSWNVMISVYG 354
           LMP ++LVSWNVMISVYG
Sbjct: 660 LMPQRDLVSWNVMISVYG 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 186/343 (54%), Gaps = 27/343 (7%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W +M+  Y +       + L+ +MI  G+ P+ +  P + K+C++ K +  G+ ++ +++
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
            + +E +  V   L+ ++ + GR+E    +F+    +D +   +LI  YA    ++ +  
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F +I  KD+VSWNAM++GYA  G  +E   L  EM  ++T+++P+  ++  VL+ACAQ 
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM--MKTNVRPDEGTMVTVLSACAQS 211

Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
           + V+LG+ +H ++  H            I L + CG V  +C +F  LS +DVV WN++I
Sbjct: 212 RSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLI 271

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------- 307
             +       +AL L ++++ +   PN VTIVS+LPAC  L A+  G             
Sbjct: 272 GGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKD 331

Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
           +     +  +LIDMY +CG I+ + ++F  M HK+L SWN MI
Sbjct: 332 VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Source: Thlaspi arvense

Species: Thlaspi arvense

Genus: Thlaspi

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 176/346 (50%), Gaps = 54/346 (15%)

Query: 31  CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
            +W +++  Y   G  E+ + LF  M   G +PD      V  +C+ L D   GK+++  
Sbjct: 365 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH-- 422

Query: 91  MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
                                    ME+    F     D  V+++L+D Y KC  L+++ 
Sbjct: 423 -------------------------MELVRSGFA---LDGFVSSALVDMYGKCGCLEMAK 454

Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
             F +I++K++VSWN+M+AGY+L G  +    L   M+  +  ++P   +LS +L AC++
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD--EEGIRPTLTTLSSILMACSR 512

Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
              ++LGK IHGY++R+            I L   CG +  + +VF  +   +VV WN +
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 572

Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
           IS +V+ G  ++AL +  D+  A VKP+ +T  SVLPAC +LA L +G    +F      
Sbjct: 573 ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKL 632

Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
                V  AL+DMY +CGA+ ++  IF  +P ++ VSW  MI+ YG
Sbjct: 633 EINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 176/345 (51%), Gaps = 54/345 (15%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +W +++  Y   G  E+ + LF  M   G +PD      V  +C+ L D   GK+++   
Sbjct: 174 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH--- 230

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
                                   ME+    F     D  V+++L+D Y KC  L+++  
Sbjct: 231 ------------------------MELVRSGFA---LDGFVSSALVDMYGKCGCLEMAKE 263

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F +I++K++VSWN+M+AGY+L G  +    L   M+  +  ++P   +LS +L AC++ 
Sbjct: 264 VFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD--EEGIRPTLTTLSSILMACSRS 321

Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
             ++LGK IHGY++R+            I L   CG +  + +VF  +   +VV WN +I
Sbjct: 322 VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMI 381

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
           S +V+ G  ++AL +  D+  A VKP+ +T  SVLPAC +LA L +G    +F       
Sbjct: 382 SGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLE 441

Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
               V  AL+DMY +CGA+ ++  IF  +P ++ VSW  MI+ YG
Sbjct: 442 INEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 167/343 (48%), Gaps = 54/343 (15%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W   +  Y   G++ + + L+Y M   G+ PD  V   V KAC    D + G+ V++ +I
Sbjct: 88  WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
           +  FE                               D +V  +L   Y KC  L+ +   
Sbjct: 148 ARGFES------------------------------DVIVGTALASMYTKCGSLENARQV 177

Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
           F ++ ++D+VSWNA++AGY+  G   E   L  EM++    ++PN+ +L  V+  CA + 
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQV--NGIKPNSSTLVSVMPVCAHLL 235

Query: 213 GVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
            ++ GK IH Y +R  I           ++   CG V  +  +F ++  RDV  WN+II 
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295

Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGT 310
            +  + Q  +AL     + V  +KPN++T+VSVLPAC  L AL Q           G  +
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355

Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
              V NAL++MY +CG +  + K+F  MP KN+V+WN +IS Y
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY 398

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 27/324 (8%)

Query: 52  LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
           L+  MI  G+ P+ +  P + K+C++ K +R G+ ++ +++ + ++ +  V   L+ +++
Sbjct: 75  LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 134

Query: 112 KCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
           + GR+E    +F++   +D +   +LI  YA   Y+  +   F +I  KD+VSWNAM++G
Sbjct: 135 QNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG 194

Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-- 228
           YA  G  +E   L  EM  ++T+++P+  ++  V++ACAQ   ++LG+ +H ++  H   
Sbjct: 195 YAETGNNKEALELFKEM--MKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG 252

Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
                    I L   CG V  +C +F  LS +DV+ WN++I  +       +AL L +++
Sbjct: 253 SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 312

Query: 280 IVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYGRCG 326
           + +   PN VT++S+LPAC  L A+              +G+   S    +LIDMY +CG
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 372

Query: 327 AIQKSRKIFVLMPHKNLVSWNVMI 350
            I+ ++++F  + +++L SWN MI
Sbjct: 373 DIEAAQQVFDSILNRSLSSWNAMI 396

Source: Lobularia maritima

Species: Lobularia maritima

Genus: Lobularia

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya wallichii]

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 27/324 (8%)

Query: 52  LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
           L+  MI  G+ P+ +  P + K+C++ K +R G+ ++ +++ + ++ +  V   L+ +++
Sbjct: 90  LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 149

Query: 112 KCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
           + GR+E    +F++   +D +   +LI  YA   Y+  +   F +I  KD+VSWNAM++G
Sbjct: 150 QNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG 209

Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-- 228
           YA  G  +E   L  EM  ++T+++P+  ++  V++ACAQ   ++LG+ +H ++  H   
Sbjct: 210 YAETGNNKEALELFKEM--MKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG 267

Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
                    I L   CG V  +C +F  LS +DV+ WN++I  +       +AL L +++
Sbjct: 268 SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 327

Query: 280 IVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYGRCG 326
           + +   PN VT++S+LPAC  L A+              +G+   S    +LIDMY +CG
Sbjct: 328 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 387

Query: 327 AIQKSRKIFVLMPHKNLVSWNVMI 350
            I+ ++++F  + +++L SWN MI
Sbjct: 388 DIEAAQQVFDSILNRSLSSWNAMI 411

Source: Crucihimalaya wallichii

Species: Crucihimalaya wallichii

Genus: Crucihimalaya

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 187/343 (54%), Gaps = 27/343 (7%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W +M   + +       + L+  MI  G+ P+ +  P + K+C++ K ++ G+ ++ +++
Sbjct: 59  WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVL 118

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
            +  + +  V   L+ ++++ GR+E    +F+E   +D +   +LI  YA   Y++ +  
Sbjct: 119 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQK 178

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F +I  KD+VSWNAM++GYA  G  +E   L  +M  ++T+++P+  ++  V++ACAQ 
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 236

Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
             ++LG+ +H ++  H            I L + CG +  +C +F  L  +DV+ WN++I
Sbjct: 237 GSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLI 296

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
             +       +AL L ++++ +   PN VT++S+LPAC  L A+              +G
Sbjct: 297 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 356

Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
           +   S +  +LIDMY +CG I+ + ++F  + HK+L SWN MI
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 399

Source: Iberis amara

Species: Iberis amara

Genus: Iberis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2205200	741	OTP82 "AT1G08070" [Arabidopsis	0.892	0.426	0.285	5.2e-41
TAIR|locus:2181201	691	AT5G27110 [Arabidopsis thalian	0.889	0.455	0.304	1.6e-34
TAIR|locus:2060640	738	OTP81 "ORGANELLE TRANSCRIPT PR	0.898	0.430	0.281	2.1e-34
TAIR|locus:2007116	787	AT1G69350 "AT1G69350" [Arabido	0.940	0.423	0.283	1.2e-33
TAIR|locus:2175653	677	AT5G39350 "AT5G39350" [Arabido	0.621	0.324	0.276	2.7e-33
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.957	0.431	0.252	3.7e-32
TAIR|locus:2148101	850	AT5G16860 "AT5G16860" [Arabido	0.827	0.344	0.249	1.2e-19
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.618	0.246	0.298	1.1e-23
TAIR|locus:2825379	681	AT1G71490 "AT1G71490" [Arabido	0.903	0.469	0.265	4.8e-31
TAIR|locus:2124603	617	AT4G18520 [Arabidopsis thalian	0.935	0.536	0.300	5.5e-31

TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 98/343 (28%), Positives = 188/343 (54%)

Query:    33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
             W +M   + +       + L+  MI  G+ P+ +  P V K+C++ K ++ G+ ++ +++
Sbjct:   102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161

Query:    93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
              +  + +  V   L+ ++++ GR+E    +F++   +D +   +LI  YA   Y++ +  
Sbjct:   162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221

Query:   152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
              F +I  KD+VSWNAM++GYA  G  +E   L  +M  ++T+++P+  ++  V++ACAQ 
Sbjct:   222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 279

Query:   212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
               ++LG+ +H ++  H            I L + CG +  +C +F +L  +DV+ WN++I
Sbjct:   280 GSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339

Query:   261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
               +       +AL L ++++ +   PN VT++S+LPAC  L A+              +G
Sbjct:   340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399

Query:   308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
             +   S +  +LIDMY +CG I+ + ++F  + HK+L SWN MI
Sbjct:   400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 106/348 (30%), Positives = 181/348 (52%)

Query:    34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY----RVGKDVYD 89
             +S++GMY     +E  + +F  M ++ V   + V    Y++    K      R+    ++
Sbjct:   146 SSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFE 205

Query:    90 -YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
                +S+    +AC +   L+   +  R  +  G   E+D+   VN++L+D Y KC  L+V
Sbjct:   206 PNSVSLTVAISACSRLLWLERGKEIHRKCVKKGF--ELDE--YVNSALVDMYGKCDCLEV 261

Query:   149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
             +   F K+ +K LV+WN+M+ GY   G  +    +L+ M +  T  +P+  +L+ +L AC
Sbjct:   262 AREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGT--RPSQTTLTSILMAC 319

Query:   209 AQVKGVKLGKAIHGYVLRHHIH--LSTACGFV--ICSCSVFNQLST------RDVVV-WN 257
             ++ + +  GK IHGYV+R  ++  +   C  +     C   N   T      +DV   WN
Sbjct:   320 SRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWN 379

Query:   258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
              +IS+++  G    A+++   ++   VKP+ VT  SVLPAC +LAAL +G          
Sbjct:   380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISES 439

Query:   308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
              L T   + +AL+DMY +CG  +++ +IF  +P K++VSW VMIS YG
Sbjct:   440 RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYG 487

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 2.1e-34, P = 2.1e-34
 Identities = 97/344 (28%), Positives = 171/344 (49%)

Query:    32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
             +W SM+  +   G  ++ + LF  M  + V+  H     V  AC+++++   G+ V  Y+
Sbjct:   199 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI 258

Query:    92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
                +   N  +   +LD++ KCG +E    LF+ M++ D +   +++D YA     + + 
Sbjct:   259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 318

Query:   151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
                + + QKD+V+WNA+++ Y   G   E   +  E+++ Q +M+ N I+L   L+ACAQ
Sbjct:   319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL-QKNMKLNQITLVSTLSACAQ 377

Query:   211 VKGVKLGKAIHGYVLRH------H-----IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
             V  ++LG+ IH Y+ +H      H     IH+ + CG +  S  VFN +  RDV VW+++
Sbjct:   378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437

Query:   260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
             I      G   +A+D+   +  ANVKPN VT  +V  AC     + +            G
Sbjct:   438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497

Query:   308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
             +      +  ++D+ GR G ++K+ K    MP     S W  ++
Sbjct:   498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 107/378 (28%), Positives = 185/378 (48%)

Query:     1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
             + +G +VH  +I  GV+        ++E     TS++ MY   G   +   +F  M    
Sbjct:   117 LSVGGKVHGRIIKGGVD-----DDAVIE-----TSLLCMYGQTGNLSDAEKVFDGM---P 163

Query:    61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
             VR D      +  +C E  +      ++  M+    E +A     +++   + G + I  
Sbjct:   164 VR-DLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIAR 222

Query:   121 GLFEEM-----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
              +  ++     D D  + NSL+  Y+KC  L  S   F KI +K+ VSW AM++ Y  G 
Sbjct:   223 SVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGE 282

Query:   176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----- 230
             F E+   L    EMI++ ++PN ++L  VL++C  +  ++ GK++HG+ +R  +      
Sbjct:   283 FSEKA--LRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYES 340

Query:   231 LSTA-------CGFVICSC-SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
             LS A       CG  +  C +V   +S R++V WNS+IS +   G V+ AL L R ++  
Sbjct:   341 LSLALVELYAECG-KLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQ 399

Query:   283 NVKPNTVTIVSVLPACLKLAALPQGL---G-------TGSFVWNALIDMYGRCGAIQKSR 332
              +KP+  T+ S + AC     +P G    G       +  FV N+LIDMY + G++  + 
Sbjct:   400 RIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSAS 459

Query:   333 KIFVLMPHKNLVSWNVMI 350
              +F  + H+++V+WN M+
Sbjct:   460 TVFNQIKHRSVVTWNSML 477

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
 Identities = 69/250 (27%), Positives = 128/250 (51%)

Query:   132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
             V N+L++ Y KC  +  +   F +++++D+++W  M+ GY   G   +V N L+   ++Q
Sbjct:   255 VKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDG---DVENALELCRLMQ 311

Query:   192 TD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTACGFVICSCS--- 243
              + ++PN ++++ +++ C     V  GK +HG+ +R  ++    + T+   +   C    
Sbjct:   312 FEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVD 371

Query:   244 ----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
                 VF+  S      W++II+  V++  V DAL L + +   +V+PN  T+ S+LPA  
Sbjct:   372 LCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYA 431

Query:   300 KLAALPQGLG-------TGSF----VWNALIDMYGRCGAIQKSRKIF--VLMPHKN--LV 344
              LA L Q +        TG          L+ +Y +CG ++ + KIF  +   HK+  +V
Sbjct:   432 ALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVV 491

Query:   345 SWNVMISVYG 354
              W  +IS YG
Sbjct:   492 LWGALISGYG 501

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
 Identities = 94/373 (25%), Positives = 180/373 (48%)

Query:    10 HLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFV 67
             H+ V  ++L      Q+ E     W SM+  +N  GY    +++F  M+ D  + PD F 
Sbjct:   222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281

Query:    68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
                V  AC+ L+   +GK ++ ++++  F+ +  V   L+ ++ +CG +E    L E+  
Sbjct:   282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query:   128 -QDFLVNN--SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
              +D  +    +L+D Y K   +  +   F  +K +D+V+W AM+ GY   G   E  NL 
Sbjct:   342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLF 401

Query:   185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA------ 234
                 M+    +PN+ +L+ +L+  + +  +  GK IHG  ++    + + +S A      
Sbjct:   402 --RSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYA 459

Query:   235 -CGFVICSCSVFNQLST-RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
               G +  +   F+ +   RD V W S+I A  + G   +AL+L   +++  ++P+ +T V
Sbjct:   460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519

Query:   293 SVLPACLKLAALPQG-------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
              V  AC     + QG             + T S  +  ++D++GR G +Q++++    MP
Sbjct:   520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSH-YACMVDLFGRAGLLQEAQEFIEKMP 578

Query:   340 -HKNLVSWNVMIS 351
                ++V+W  ++S
Sbjct:   579 IEPDVVTWGSLLS 591

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 81/325 (24%), Positives = 147/325 (45%)

Query:    14 CGV--ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
             CG+  E      +  ++   +W +M+  Y+ +G +E+ V LF  M ++ ++ D       
Sbjct:   277 CGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAA 336

Query:    72 ----------YKA---CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
                       Y+A   C ++    +  +    +IS+   G A V   +    I C  ++ 
Sbjct:   337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVT-LISV-LSGCASVGALMHGKEIHCYAIKY 394

Query:   119 TSGLFEEMDQDF-LVNNSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAMLAGYALGG 175
                L +    D  +V N LID YAKC+ +  +   F  +  K++D+V+W  M+ GY+  G
Sbjct:   395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query:   176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------- 228
                +   LL EM       +PN  ++S  L ACA +  +++GK IH Y LR+        
Sbjct:   455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514

Query:   229 -----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
                  I +   CG +  +  VF+ +  ++ V W S+++ +   G   +AL +  ++    
Sbjct:   515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG 574

Query:   284 VKPNTVTIVSVLPACLKLAALPQGL 308
              K + VT++ VL AC     + QG+
Sbjct:   575 FKLDGVTLLVVLYACSHSGMIDQGM 599

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 74/248 (29%), Positives = 133/248 (53%)

Query:   132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MI 190
             V N+L++ Y KC      +  F +I +++ VSWN++++  +L  F E+    L+    M+
Sbjct:   135 VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS--SLCSF-EKWEMALEAFRCML 191

Query:   191 QTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLR----HHIHLSTAC------GF 237
               +++P++ +L  V+ AC+ +   +G+ +GK +H Y LR    +   ++T        G 
Sbjct:   192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGK 251

Query:   238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
             +  S  +      RD+V WN+++S+  ++ Q+++AL+ LR++++  V+P+  TI SVLPA
Sbjct:   252 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311

Query:   298 CLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
             C  L  L  G            L   SFV +AL+DMY  C  +   R++F  M  + +  
Sbjct:   312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371

Query:   346 WNVMISVY 353
             WN MI+ Y
Sbjct:   372 WNAMIAGY 379

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2825379 AT1G71490 "AT1G71490" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 4.8e-31, P = 4.8e-31
 Identities = 93/350 (26%), Positives = 167/350 (47%)

Query:    33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
             W  ++  Y     +EE++  +  M+ KG+RPD F  P V KAC E  D   G+ V+  + 
Sbjct:   112 WNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIE 171

Query:    93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
                ++ +  V   L+ ++ +   M I   LF+ M ++D +  N++I+ YA       +  
Sbjct:   172 VSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFE 231

Query:   152 KFSKI----KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
              F K+     +  +++WN +  G    G       L+  M    T + P  + +   L A
Sbjct:   232 LFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG--LKA 289

Query:   208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
             C+ +  ++LGK IHG  +              I + + C  +  +  VF Q     +  W
Sbjct:   290 CSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTW 349

Query:   257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LG 309
             NSIIS + +  +  +A  LLR+++VA  +PN++T+ S+LP C ++A L  G       L 
Sbjct:   350 NSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILR 409

Query:   310 TGSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
                F     +WN+L+D+Y + G I  ++++  LM  ++ V++  +I  YG
Sbjct:   410 RKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYG 459

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124603 AT4G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 5.5e-31, P = 5.5e-31
 Identities = 115/383 (30%), Positives = 187/383 (48%)

Query:     2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61
             ELG QVH +++  GV      G+ ++E     +S++  Y   G     +  F +M +K V
Sbjct:   201 ELGRQVHGNMVKVGV------GNLIVE-----SSLVYFYAQCGELTSALRAFDMMEEKDV 249

Query:    62 RPDHFVCPKVYKACSELKDYRVGK-DVYDYMISIKF---EGNAC--VKRPLLDLFIKCGR 115
                      V  ACS  K + +    ++  M++  F   E   C  +K    +  ++ GR
Sbjct:   250 ----ISWTAVISACSR-KGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGR 304

Query:   116 MEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYA 172
              ++ S + + M + D  V  SL+D YAKC   ++S C+  F  +  ++ V+W +++A +A
Sbjct:   305 -QVHSLVVKRMIKTDVFVGTSLMDMYAKCG--EISDCRKVFDGMSNRNTVTWTSIIAAHA 361

Query:   173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
               GF EE  +L   M+  +  +  N +++  +L AC  V  + LGK +H  ++++ I  +
Sbjct:   362 REGFGEEAISLFRIMK--RRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 419

Query:   233 TACG----FVICSCS----VFN---QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
                G    ++ C C      FN   QL +RDVV W ++IS     G   +ALD L+++I 
Sbjct:   420 VYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQ 479

Query:   282 ANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQK 330
               V+PN  T  S L AC    +L  G    S           FV +ALI MY +CG + +
Sbjct:   480 EGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSE 539

Query:   331 SRKIFVLMPHKNLVSWNVMISVY 353
             + ++F  MP KNLVSW  MI  Y
Sbjct:   540 AFRVFDSMPEKNLVSWKAMIMGY 562

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017247001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (868 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-48
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-37
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-30
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-28
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-25
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-25
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-20
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.001

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  175 bits (444), Expect = 1e-48
 Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 54/342 (15%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +W  ++G Y   GY++E + L++ M+  GVRPD +  P V + C  + D   G++V+ ++
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
           +   FE                           ++D    V N+LI  Y KC  +  +  
Sbjct: 214 VRFGFE--------------------------LDVD----VVNALITMYVKCGDVVSARL 243

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F ++ ++D +SWNAM++GY   G   E   L     M +  + P+ ++++ V++AC  +
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELF--FTMRELSVDPDLMTITSVISACELL 301

Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
              +LG+ +HGYV++             I +  + G    +  VF+++ T+D V W ++I
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
           S + ++G    AL+    +   NV P+ +TI SVL AC  L  L  G+            
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421

Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
               V NALI+MY +C  I K+ ++F  +P K+++SW  +I+
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  143 bits (361), Expect = 1e-37
 Identities = 97/344 (28%), Positives = 162/344 (47%), Gaps = 56/344 (16%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +W +M+  Y   G   E + LF+ M +  V PD      V  AC  L D R+G++++ Y+
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
           +   F                                D  V NSLI  Y        +  
Sbjct: 315 VKTGFAV------------------------------DVSVCNSLIQMYLSLGSWGEAEK 344

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            FS+++ KD VSW AM++GY   G  ++       ME  Q ++ P+ I+++ VL+ACA +
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME--QDNVSPDEITIASVLSACACL 402

Query: 212 ----KGVKL-----GKAIHGYVLRHH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
                GVKL      K +  YV+  +  I + + C  +  +  VF+ +  +DV+ W SII
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
           +    + +  +AL   R ++   +KPN+VT+++ L AC ++ AL             G+G
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521

Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
              F+ NAL+D+Y RCG +  +   F     K++VSWN++++ Y
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  121 bits (305), Expect = 3e-30
 Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 57/331 (17%)

Query: 32  NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
           +WT+M+  Y   G  ++ +  + LM    V PD      V  AC+ L D           
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD----------- 404

Query: 92  ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
                          LD+ +K   +    GL   +    +V N+LI+ Y+KC+ +  +  
Sbjct: 405 ---------------LDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALE 445

Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
            F  I +KD++SW +++AG  L     E      +M +    ++PN+++L   L+ACA++
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSACARI 502

Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
             +  GK IH +VLR  I            L   CG +  + + FN    +DVV WN ++
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILL 561

Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
           + +V  G+   A++L   ++ + V P+ VT +S+L AC +   + QGL     +      
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621

Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
                 +  ++D+ GR G + ++      MP
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  115 bits (289), Expect = 4e-28
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 24/223 (10%)

Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
           F K+ ++DL SWN ++ GYA  G+ +E   L   M  +   ++P+  +   VL  C  + 
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM--LWAGVRPDVYTFPCVLRTCGGIP 201

Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
            +  G+ +H +V+R             I +   CG V+ +  VF+++  RD + WN++IS
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261

Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
            +  +G+ ++ L+L   +   +V P+ +TI SV+ AC  L             +  G   
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
              V N+LI MY   G+  ++ K+F  M  K+ VSW  MIS Y
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  107 bits (268), Expect = 2e-25
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 43/277 (15%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W +++G     G Y E   LF  M + G   +      + +A + L   R G+ ++    
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH---- 247

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
                   CV        +K G           +  D  V+ +LID Y+KC  ++ + C 
Sbjct: 248 -------CCV--------LKTG-----------VVGDTFVSCALIDMYSKCGDIEDARCV 281

Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
           F  + +K  V+WN+MLAGYAL G+ EE   L  EM      +   T S+  ++   +++ 
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI--MIRIFSRLA 339

Query: 213 GVKLGKAIHGYVLRHHIHL----STAC-------GFVICSCSVFNQLSTRDVVVWNSIIS 261
            ++  K  H  ++R    L    +TA        G +  + +VF+++  ++++ WN++I+
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399

Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
            +   G+   A+++   +I   V PN VT ++VL AC
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  106 bits (267), Expect = 2e-25
 Identities = 75/303 (24%), Positives = 127/303 (41%), Gaps = 54/303 (17%)

Query: 74  ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
           AC  LK  R  K VY ++ S  FE +  +   +L + +KCG +     LF+EM       
Sbjct: 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------- 184

Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
                                   +++L SW  ++ G    G   E   L  EM    +D
Sbjct: 185 -----------------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221

Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
            +P T  +  +L A A +   + G+ +H  VL+             I + + CG +  + 
Sbjct: 222 AEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279

Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
            VF+ +  +  V WNS+++ +   G   +AL L  ++  + V  +  T   ++    +LA
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

Query: 303 ALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
            L             G         AL+D+Y + G ++ +R +F  MP KNL+SWN +I+
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399

Query: 352 VYG 354
            YG
Sbjct: 400 GYG 402

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 90.7 bits (225), Expect = 6e-20
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 22/172 (12%)

Query: 204 VLAACAQVKGVKLGKAIHGYV----------LRHHIHLS-TACGFVICSCSVFNQLSTRD 252
           ++ AC  +K ++  KA++ +V          + + + L    CG +I +  +F+++  R+
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188

Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKL 301
           +  W +II   V +G   +A  L R++          T V +L A            L  
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248

Query: 302 AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
             L  G+   +FV  ALIDMY +CG I+ +R +F  MP K  V+WN M++ Y
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 24/211 (11%)

Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
           N+ L      G  E+   LL+ M+ ++  +  +  +   +   C   + V+ G  +    
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112

Query: 225 LRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
           L  H  L    G  + S             VF ++  RD+  WN ++  + ++G   +AL
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172

Query: 274 DLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMY 322
            L   ++ A V+P+  T   VL  C           +    +  G      V NALI MY
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
            +CG +  +R +F  MP ++ +SWN MIS Y
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGY 263

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 32/188 (17%)

Query: 33  WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
           W SM+  Y + GY EE + L+Y M D GV  D F    + +  S L      K  +  +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352

Query: 93  SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
              F  +      L+DL+ K GRME    +F+ M                          
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-------------------------- 386

Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
                +K+L+SWNA++AGY   G   +   + + M  I   + PN ++   VL+AC    
Sbjct: 387 ----PRKNLISWNALIAGYGNHGRGTKAVEMFERM--IAEGVAPNHVTFLAVLSACRYSG 440

Query: 213 GVKLGKAI 220
             + G  I
Sbjct: 441 LSEQGWEI 448

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
           DVV +N++I  + + G+V +AL L  ++    +KPN  T   ++    K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 19/113 (16%)

Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW- 315
           NS + A    GQ+  AL LL  +    V  +    V    A  +L    + +  GS V  
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYV----ALFRLCEWKRAVEEGSRVCS 110

Query: 316 --------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
                         NA++ M+ R G +  +  +F  MP ++L SWNV++  Y 
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 29/148 (19%)

Query: 4   GIQVHAHLIVCGVELCAFLGSQLLEVF--C------------------NWTSMMGMYNVL 43
           G ++HAH++  G+    FL + LL+++  C                  +W  ++  Y   
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567

Query: 44  GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFEG 98
           G     V LF  M++ GV PD      +  ACS       G + +      Y I+   + 
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627

Query: 99  NACVKRPLLDLFIKCGRMEITSGLFEEM 126
            ACV    +DL  + G++        +M
Sbjct: 628 YACV----VDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 9/35 (25%), Positives = 23/35 (65%)

Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
           V +N++I    ++G+V +AL+L +++    ++P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 13/94 (13%)

Query: 250 TRDVVVWNSIISAFVRSGQVVDAL-DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
             D  ++ ++IS   +SG+ VDA+ ++  +++ A V+ N  T  +++  C +   + +  
Sbjct: 469 KADCKLYTTLISTCAKSGK-VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527

Query: 309 GT-----------GSFVWNALIDMYGRCGAIQKS 331
           G               V+NALI   G+ GA+ ++
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.72
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.63
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.63
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.62
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.59
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.59
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.58
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.55
PF13041	50	PPR_2: PPR repeat family	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.51
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.5
PF13041	50	PPR_2: PPR repeat family	99.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.39
PRK14574	822	hmsH outer membrane protein; Provisional	99.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.37
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.37
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.34
PRK14574	822	hmsH outer membrane protein; Provisional	99.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
KOG2076	895	consensus RNA polymerase III transcription factor	99.28
KOG1126	638	consensus DNA-binding cell division cycle control	99.27
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.26
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.19
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.18
KOG1126	638	consensus DNA-binding cell division cycle control	99.18
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.13
KOG2003	840	consensus TPR repeat-containing protein [General f	99.11
PRK12370	553	invasion protein regulator; Provisional	99.09
PRK12370	553	invasion protein regulator; Provisional	99.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.06
KOG2076	895	consensus RNA polymerase III transcription factor	99.03
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.02
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.01
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.98
KOG2003	840	consensus TPR repeat-containing protein [General f	98.95
PF12854	34	PPR_1: PPR repeat	98.93
PRK11189	296	lipoprotein NlpI; Provisional	98.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.88
KOG1129	478	consensus TPR repeat-containing protein [General f	98.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.87
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.85
PF12854	34	PPR_1: PPR repeat	98.83
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.78
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.78
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.75
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.75
PRK11189	296	lipoprotein NlpI; Provisional	98.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.73
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.71
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.7
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.68
KOG1129	478	consensus TPR repeat-containing protein [General f	98.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.6
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.6
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.55
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.51
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.47
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.47
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.46
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.41
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.39
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.31
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.23
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.23
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.22
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.21
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.19
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.12
KOG1125	579	consensus TPR repeat-containing protein [General f	98.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
PLN02789	320	farnesyltranstransferase	98.05
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.04
PRK15359	144	type III secretion system chaperone protein SscB;	98.01
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.0
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.0
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.99
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.99
PRK15359	144	type III secretion system chaperone protein SscB;	97.99
PRK04841	903	transcriptional regulator MalT; Provisional	97.96
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.95
PLN02789	320	farnesyltranstransferase	97.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.91
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.89
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.86
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.84
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.83
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.82
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.82
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.82
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.81
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.8
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.75
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.7
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.7
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.68
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.65
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.61
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.59
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.59
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.51
PRK04841	903	transcriptional regulator MalT; Provisional	97.51
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.5
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.23
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.15
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.09
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.09
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.06
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.99
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.91
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.89
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.88
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.85
KOG1125	579	consensus TPR repeat-containing protein [General f	96.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.83
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.75
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.67
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.65
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.63
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	96.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.51
PF12688	120	TPR_5: Tetratrico peptide repeat	96.51
PF12688	120	TPR_5: Tetratrico peptide repeat	96.48
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.47
PRK10803	263	tol-pal system protein YbgF; Provisional	96.47
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.38
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.35
KOG3941	406	consensus Intermediate in Toll signal transduction	96.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.29
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.26
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.21
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.21
KOG0553	304	consensus TPR repeat-containing protein [General f	96.17
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.14
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.04
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.01
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.96
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.91
PF13371	73	TPR_9: Tetratricopeptide repeat	95.91
PRK10803	263	tol-pal system protein YbgF; Provisional	95.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.83
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.76
KOG0553	304	consensus TPR repeat-containing protein [General f	95.68
PF13371	73	TPR_9: Tetratricopeptide repeat	95.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.62
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.54
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.54
KOG3941	406	consensus Intermediate in Toll signal transduction	95.51
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.31
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.29
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.29
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.21
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	95.2
PRK15331	165	chaperone protein SicA; Provisional	95.1
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.86
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.83
PRK15331	165	chaperone protein SicA; Provisional	94.79
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.71
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.81
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.44
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.1
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.05
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.97
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	92.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.54
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.36
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.33
PF13929	292	mRNA_stabil: mRNA stabilisation	92.29
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.02
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.89
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.71
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	91.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.42
PF13428	44	TPR_14: Tetratricopeptide repeat	91.22
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.21
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.03
PF13512	142	TPR_18: Tetratricopeptide repeat	90.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.71
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.57
PF13762	145	MNE1: Mitochondrial splicing apparatus component	90.24
PF13428	44	TPR_14: Tetratricopeptide repeat	90.08
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.02
PF13512	142	TPR_18: Tetratricopeptide repeat	89.96
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	89.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.68
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.36
KOG1585	308	consensus Protein required for fusion of vesicles	89.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.11
KOG2610	491	consensus Uncharacterized conserved protein [Funct	88.77
KOG4555	175	consensus TPR repeat-containing protein [Function	88.68
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.47
PF13431	34	TPR_17: Tetratricopeptide repeat	88.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.99
KOG1585	308	consensus Protein required for fusion of vesicles	87.8
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.18
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	86.69
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.37
PRK11906	458	transcriptional regulator; Provisional	86.3
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.05
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.34
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	84.73
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	84.63
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.52
KOG4555	175	consensus TPR repeat-containing protein [Function	83.91
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.9
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	83.66
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.62
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.47
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.32
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.01
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.74
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.98
KOG1586	288	consensus Protein required for fusion of vesicles	81.85
PF13762	145	MNE1: Mitochondrial splicing apparatus component	81.72
KOG1586	288	consensus Protein required for fusion of vesicles	81.65
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.01
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	80.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.4
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	80.12

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-58  Score=432.17  Aligned_cols=347  Identities=21%  Similarity=0.342  Sum_probs=332.6

Q ss_pred             hhhHHHHHHHHHhc-cccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHH
Q 038758            2 ELGIQVHAHLIVCG-VELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYL   55 (354)
Q Consensus         2 ~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~   55 (354)
                      ++|.++++.|...+ +.|+..+|+.++.+|+                         +||.|++.|++.|++++|.++|++
T Consensus       104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~  183 (697)
T PLN03081        104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE  183 (697)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence            57888999998865 7899999999999987                         999999999999999999999999


Q ss_pred             HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----cccc
Q 038758           56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDF  130 (354)
Q Consensus        56 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~  130 (354)
                      |.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+     .++.
T Consensus       184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~  259 (697)
T PLN03081        184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT  259 (697)
T ss_pred             CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc
Confidence            96    48999999999999999999999999999999999999999999999999999999999998887     6899


Q ss_pred             chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      .+|++|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|.++|++|.  ..|+.||..||+.++.+|++
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999999999


Q ss_pred             hcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                      .|+++.|.+++..+.+.|+.++.           ++|++++|.++|++|..||..+||+||.+|++.|+.++|+++|++|
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M  417 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM  417 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999988776           8999999999999999999999999999999999999999999999


Q ss_pred             HHcCcCCCHhhHHHHHHHhhccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCcccH
Q 038758          280 IVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSW  346 (354)
Q Consensus       280 ~~~g~~p~~~t~~~li~~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~  346 (354)
                      .+.|+.||..||+.++.+|++.|.+++|            +.|+..+|++++++|++.|++++|.+++++|.. ||..+|
T Consensus       418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~  497 (697)
T PLN03081        418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW  497 (697)
T ss_pred             HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence            9999999999999999999999998776            789999999999999999999999999999975 999999


Q ss_pred             HHhhhhcC
Q 038758          347 NVMISVYG  354 (354)
Q Consensus       347 ~~li~~~~  354 (354)
                      ++||.+|+
T Consensus       498 ~~Ll~a~~  505 (697)
T PLN03081        498 AALLTACR  505 (697)
T ss_pred             HHHHHHHH
Confidence            99999984

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.6e-58  Score=440.91  Aligned_cols=347  Identities=28%  Similarity=0.538  Sum_probs=320.6

Q ss_pred             hhHHHHHHHHHhccccchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038758            3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV   61 (354)
Q Consensus         3 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~   61 (354)
                      .+.+++.+|.+.|+.|++.++|+||.+|+                     +||+||.+|++.|++++|+++|++|...|+
T Consensus       205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~  284 (857)
T PLN03077        205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV  284 (857)
T ss_pred             hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            45667777777777777777777887777                     999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---------------
Q 038758           62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---------------  126 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---------------  126 (354)
                      .||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|               
T Consensus       285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~  364 (857)
T PLN03077        285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY  364 (857)
T ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888888888888               


Q ss_pred             --------------------------------------------------------ccccchhhHHHHHHHhcCchhHHH
Q 038758          127 --------------------------------------------------------DQDFLVNNSLIDFYAKCRYLKVSH  150 (354)
Q Consensus       127 --------------------------------------------------------~~~~~~~~~li~~~~~~~~~~~a~  150 (354)
                                                                              .++..+||+|+++|++.|++++|.
T Consensus       365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  444 (857)
T PLN03077        365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL  444 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence                                                                    345567777888888888888899


Q ss_pred             HHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758          151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       151 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  230 (354)
                      ++|++|.++|..+||.+|.+|++.|+.++|.++|++|.  . ++.||..||+.+|.+|++.|+++.+.+++..+.+.|+.
T Consensus       445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~--~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~  521 (857)
T PLN03077        445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML--L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG  521 (857)
T ss_pred             HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH--h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence            99999988999999999999999999999999999996  4 69999999999999999999999999999999999988


Q ss_pred             ccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhh
Q 038758          231 LST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL  299 (354)
Q Consensus       231 ~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  299 (354)
                      ++.           ++|++++|+.+|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|+
T Consensus       522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  600 (857)
T PLN03077        522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS  600 (857)
T ss_pred             ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence            776           999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCC-CCCcccHHHhhhhc
Q 038758          300 KLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISVY  353 (354)
Q Consensus       300 ~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~  353 (354)
                      +.|.+++|            +.|+..+|++++++|++.|++++|.+++++|. +||..+|++||++|
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac  667 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC  667 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            99998876            78999999999999999999999999999996 59999999999987

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.6e-57  Score=428.81  Aligned_cols=349  Identities=14%  Similarity=0.215  Sum_probs=331.2

Q ss_pred             hhhHHHHHHHHHhccc-cchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038758            2 ELGIQVHAHLIVCGVE-LCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDK   59 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~   59 (354)
                      ++|.+++++|.+.|+. |+..+++.++..|+                     +||.||++|++.|+++.|.++|++|.+.
T Consensus       387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~  466 (1060)
T PLN03218        387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA  466 (1060)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence            5789999999999965 67777777777775                     9999999999999999999999999999


Q ss_pred             CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhh
Q 038758           60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNN  134 (354)
Q Consensus        60 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~  134 (354)
                      |+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|     .|+..+|+
T Consensus       467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn  546 (1060)
T PLN03218        467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN  546 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999     78999999


Q ss_pred             HHHHHHHhcCchhHHHHHhccCC------CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIK------QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~  208 (354)
                      .||.+|++.|++++|.++|++|.      .||..+|+++|.+|++.|++++|.++|++|.  +.|+.|+..+|+.+|.+|
T Consensus       547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay  624 (1060)
T PLN03218        547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH
Confidence            99999999999999999999995      4899999999999999999999999999999  999999999999999999


Q ss_pred             hhhcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHH
Q 038758          209 AQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDAL  273 (354)
Q Consensus       209 ~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~  273 (354)
                      ++.|++++|..+|+.|.+.|+.++.           +.|++++|.++|+.|.    .||..+|+++|.+|++.|++++|.
T Consensus       625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999988876           8899999999999986    689999999999999999999999


Q ss_pred             HHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc-----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--
Q 038758          274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--  340 (354)
Q Consensus       274 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--  340 (354)
                      ++|++|.+.|+.||..+|+.+|.+|++.|++++|           +.||..+|++++.+|++.|++++|.++|++|.+  
T Consensus       705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999998876           889999999999999999999999999999986  


Q ss_pred             --CCcccHHHhhhh
Q 038758          341 --KNLVSWNVMISV  352 (354)
Q Consensus       341 --~~~~~~~~li~~  352 (354)
                        ||..+|+++|..
T Consensus       785 i~pd~~tynsLIgl  798 (1060)
T PLN03218        785 IKPNLVMCRCITGL  798 (1060)
T ss_pred             CCCCHHHHHHHHHH
Confidence              999999999854

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4e-57  Score=433.70  Aligned_cols=346  Identities=22%  Similarity=0.367  Sum_probs=315.5

Q ss_pred             ChhhHHHHHHHHHhccccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHH
Q 038758            1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYL   55 (354)
Q Consensus         1 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~   55 (354)
                      +++|..++++|.+.|+.||..||+.+|++|+                         +||+||.+|++.|++++|..+|++
T Consensus       168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~  247 (857)
T PLN03077        168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR  247 (857)
T ss_pred             HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence            3689999999999999999999999999986                         799999999999999999999999


Q ss_pred             HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----cccc
Q 038758           56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDF  130 (354)
Q Consensus        56 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~  130 (354)
                      |.    .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+     .|+.
T Consensus       248 m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~  323 (857)
T PLN03077        248 MP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV  323 (857)
T ss_pred             CC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence            97    57899999999999999999999999999999999999999999999999999999999999998     7899


Q ss_pred             chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      .+||+|+.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|.++|++|+  ..|+.||..||+.++.+|++
T Consensus       324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME--QDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999999999


Q ss_pred             hcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                      .|+++.+.++++.+.+.|..++.           ++|++++|.++|++|..+|..+||++|.+|++.|+.++|+++|++|
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m  481 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM  481 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999988765           9999999999999999999999999999999999999999999999


Q ss_pred             HHcCcCCCHhhHHHHHHHhhccCcccCc-----------c------------------------------ccchhHHHHH
Q 038758          280 IVANVKPNTVTIVSVLPACLKLAALPQG-----------L------------------------------GTGSFVWNAL  318 (354)
Q Consensus       280 ~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~------------------------------~~~~~~~~~l  318 (354)
                      .. +++||..||+.++.+|++.|+++.+           +                              .||..+||++
T Consensus       482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l  560 (857)
T PLN03077        482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL  560 (857)
T ss_pred             Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH
Confidence            85 6999999999999999998887665           3                              4455555555


Q ss_pred             HHHHHhcCChhHHHHHhhcCCC----CCcccHHHhhhhc
Q 038758          319 IDMYGRCGAIQKSRKIFVLMPH----KNLVSWNVMISVY  353 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~  353 (354)
                      |.+|++.|+.++|.++|++|.+    ||.+||+.+|.+|
T Consensus       561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  599 (857)
T PLN03077        561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC  599 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            5566666666666666665554    5666666666555

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-56  Score=424.24  Aligned_cols=320  Identities=14%  Similarity=0.207  Sum_probs=296.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|+
T Consensus       474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~  553 (1060)
T PLN03218        474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG  553 (1060)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHhh-------ccccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHHHHHHHhCCChhHH
Q 038758          112 KCGRMEITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAMLAGYALGGFREEV  180 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a  180 (354)
                      +.|++++|.++|++|       .|+..+|+++|.+|++.|++++|.++|++|.+    |+..+||.+|.+|++.|++++|
T Consensus       554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA  633 (1060)
T PLN03218        554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA  633 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence            999999999999998       47888999999999999999999999999975    6779999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccC
Q 038758          181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS  249 (354)
Q Consensus       181 ~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~  249 (354)
                      .++|++|.  ..|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++.           +.|++++|.++|+.|.
T Consensus       634 l~lf~eM~--~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        634 LSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHH--HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99999999  8999999999999999999999999999999999999988876           8999999999999884


Q ss_pred             ----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc-----------cccchhH
Q 038758          250 ----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFV  314 (354)
Q Consensus       250 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~~~~~~~  314 (354)
                          .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|           +.||..+
T Consensus       712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t  791 (1060)
T PLN03218        712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM  791 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence                7999999999999999999999999999999999999999999999999999998776           8999999


Q ss_pred             HHHHHHHHH----hcC-------------------ChhHHHHHhhcCCC----CCcccHHHhhhhc
Q 038758          315 WNALIDMYG----RCG-------------------AIQKSRKIFVLMPH----KNLVSWNVMISVY  353 (354)
Q Consensus       315 ~~~li~~~~----~~g-------------------~~~~A~~~~~~m~~----~~~~~~~~li~~~  353 (354)
                      |++++..|.    +++                   ..++|..+|++|.+    ||.+||+.+|.++
T Consensus       792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl  857 (1060)
T PLN03218        792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL  857 (1060)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence            999997643    222                   34679999999987    9999999999554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.3e-54  Score=405.75  Aligned_cols=351  Identities=16%  Similarity=0.267  Sum_probs=333.9

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKG   60 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~   60 (354)
                      +.+.+++..|.+.|+.||+.+|+.|++.|+                     +||++|.+|++.|++++|+++|++|.+.|
T Consensus       140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g  219 (697)
T PLN03081        140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG  219 (697)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999998                     89999999999999999999999999999


Q ss_pred             CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHH
Q 038758           61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDF  139 (354)
Q Consensus        61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~  139 (354)
                      +.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++| +++..+||++|.+
T Consensus       220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~  299 (697)
T PLN03081        220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG  299 (697)
T ss_pred             CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 6789999999999


Q ss_pred             HHhcCchhHHHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758          140 YAKCRYLKVSHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK  215 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~  215 (354)
                      |++.|++++|.++|++|.    .||..||+.++.+|++.|++++|.+++.+|.  +.|+.||..+|+.++.+|++.|+++
T Consensus       300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~--~~g~~~d~~~~~~Li~~y~k~G~~~  377 (697)
T PLN03081        300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI--RTGFPLDIVANTALVDLYSKWGRME  377 (697)
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH--HhCCCCCeeehHHHHHHHHHCCCHH
Confidence            999999999999999995    4899999999999999999999999999999  9999999999999999999999999


Q ss_pred             ccchhhhHhhhhcccccc-------ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-cC
Q 038758          216 LGKAIHGYVLRHHIHLST-------ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-AN  283 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g  283 (354)
                      .|.++|+.|.+.+.....       +.|+.++|.++|++|.    .||..||++++.+|++.|+.++|.++|+.|.+ .|
T Consensus       378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence            999999999875544333       8999999999999986    79999999999999999999999999999976 69


Q ss_pred             cCCCHhhHHHHHHHhhccCcccCc--------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758          284 VKPNTVTIVSVLPACLKLAALPQG--------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV  352 (354)
Q Consensus       284 ~~p~~~t~~~li~~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~  352 (354)
                      +.|+..+|+.++.+|++.|++++|        +.|+..+|++|+.+|...|+++.|.++++++.+  | +..+|+.|++.
T Consensus       458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~  537 (697)
T PLN03081        458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL  537 (697)
T ss_pred             CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence            999999999999999999999987        789999999999999999999999999999877  5 46799999998


Q ss_pred             cC
Q 038758          353 YG  354 (354)
Q Consensus       353 ~~  354 (354)
                      |+
T Consensus       538 y~  539 (697)
T PLN03081        538 YN  539 (697)
T ss_pred             HH
Confidence            75

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=3.4e-20  Score=181.04  Aligned_cols=314  Identities=10%  Similarity=0.053  Sum_probs=230.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +++.+...+.+.|++++|..+++++...+ +.+...+..+...+...|++++|.++++.+.+.. +.+...|..+..++.
T Consensus       535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            66777778888888888888888887664 3455667778888888888888888888887654 556777888888888


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ..|++++|...|+++    +.+...+..+...+.+.|++++|...|+++.+   .+..++..+...+...|++++|.+++
T Consensus       613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  692 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA  692 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888877    34556677788888888888888888877654   34567778888888888888888888


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc---------ccchhHHHHHHhcccC---CCC
Q 038758          185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---------ACGFVICSCSVFNQLS---TRD  252 (354)
Q Consensus       185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~---~~~  252 (354)
                      +.+.  ..+ +++...+..+...+.+.|++++|...+..+.+.+.....         ..|+.++|...++...   +.+
T Consensus       693 ~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  769 (899)
T TIGR02917       693 KSLQ--KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND  769 (899)
T ss_pred             HHHH--hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            8886  332 445566777777788888888888888887776544432         6777788877777654   345


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cc-cchhHHHHHHHHH
Q 038758          253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG-TGSFVWNALIDMY  322 (354)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~-~~~~~~~~li~~~  322 (354)
                      ...++.+...|.+.|+.++|.+.|+++.+.. +++...+..+...+...|+ .++         .. -+..++..+...+
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~  847 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL  847 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            6677777788888888888888888887654 4556677777777777777 444         22 2455666777777


Q ss_pred             HhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758          323 GRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV  352 (354)
Q Consensus       323 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~  352 (354)
                      .+.|++++|.+.++++.+  | |..++..+..+
T Consensus       848 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  880 (899)
T TIGR02917       848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALA  880 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            888888888888887776  3 44555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.88  E-value=3.7e-20  Score=180.75  Aligned_cols=300  Identities=8%  Similarity=-0.001  Sum_probs=167.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+...+.+.|++++|..+++.+.... +.+...|..+...+...|++++|.+.|+.+.+.. +.+...+..+..++.
T Consensus       569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  646 (899)
T TIGR02917       569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA  646 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            44455556666666666666666665432 3344556666666666666666666666665543 334445556666666


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      +.|++++|...|+++    +.+...+..+...+...|++++|.++++.+.+   .+...+..+...+.+.|++++|.+.|
T Consensus       647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  726 (899)
T TIGR02917       647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY  726 (899)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666666666655    23345555666666666666666666665543   23444555555666666666666666


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CC
Q 038758          185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TR  251 (354)
Q Consensus       185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~  251 (354)
                      +.+.  ..  .|+..++..+..++.+.|+.++|...+..+.+.......          ..|+.++|...|+++.   ++
T Consensus       727 ~~~~--~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  802 (899)
T TIGR02917       727 RKAL--KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD  802 (899)
T ss_pred             HHHH--hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence            6655  22  233445555556666666666666666655554332221          4566666666665543   33


Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------c-ccchhHHHHHHHH
Q 038758          252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------L-GTGSFVWNALIDM  321 (354)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~-~~~~~~~~~li~~  321 (354)
                      +...++.+...+.+.|+ .+|+..+++..+.. +-+..++..+...+...|+++++         . +.+..++..+...
T Consensus       803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  880 (899)
T TIGR02917       803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA  880 (899)
T ss_pred             CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            44555666666666666 55666666655431 11223344455555556665554         1 2255566666666


Q ss_pred             HHhcCChhHHHHHhhcCC
Q 038758          322 YGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       322 ~~~~g~~~~A~~~~~~m~  339 (354)
                      +.+.|++++|.+++++|.
T Consensus       881 ~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       881 LLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHcCCHHHHHHHHHHHh
Confidence            666666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=1.7e-19  Score=159.47  Aligned_cols=276  Identities=10%  Similarity=0.039  Sum_probs=222.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCC
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGR  115 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~  115 (354)
                      .+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++   ...+..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            4567899999999999999874 33556788899999999999999999999987532221   2467888999999999


Q ss_pred             hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC------hhhhHHHHHHHHhCCChhHHHHH
Q 038758          116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD------LVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      ++.|..+|+++    +.+..+++.++..+.+.|++++|.+.++.+.+  |+      ...+..+...+.+.|++++|.+.
T Consensus       123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999    34567888999999999999999999998864  22      12355677788899999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHH
Q 038758          184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF  263 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  263 (354)
                      |+++.  ... +.+...+..+...+.+.|++++|..+++.+.+.+.                    .....+++.+..+|
T Consensus       203 ~~~al--~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~~~l~~~~  259 (389)
T PRK11788        203 LKKAL--AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--------------------EYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHH--hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--------------------hhHHHHHHHHHHHH
Confidence            99997  332 22345677778889999999999999998887643                    22245678888999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHHh---cCChhHH
Q 038758          264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYGR---CGAIQKS  331 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A  331 (354)
                      .+.|+.++|...++++.+.  .|+...+..+...+.+.|+.+.+         ..|+...++.++..+..   .|+.+++
T Consensus       260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a  337 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKES  337 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhH
Confidence            9999999999999998865  57777778888889999988877         56888888888888775   5689999


Q ss_pred             HHHhhcCCC
Q 038758          332 RKIFVLMPH  340 (354)
Q Consensus       332 ~~~~~~m~~  340 (354)
                      ..++++|.+
T Consensus       338 ~~~~~~~~~  346 (389)
T PRK11788        338 LLLLRDLVG  346 (389)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=5.7e-19  Score=156.13  Aligned_cols=257  Identities=11%  Similarity=0.070  Sum_probs=210.6

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccc--------cchhhHHHHHHHhc
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD--------FLVNNSLIDFYAKC  143 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~li~~~~~~  143 (354)
                      ...+...|++++|.+.|+.+.+.+ +.+..++..+...+...|++++|..+++.+...        ...+..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            334568899999999999999875 556678999999999999999999999988221        24577889999999


Q ss_pred             CchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc----chHHHHHHHhhhhcCccc
Q 038758          144 RYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT----ISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~  216 (354)
                      |++++|..+|+++.+   .+..+++.++..+.+.|++++|.+.++.+.  ..+..+..    ..+..+...+.+.|++++
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--KLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            999999999999875   456789999999999999999999999997  54433221    234556667778899999


Q ss_pred             cchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758          217 GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP  296 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  296 (354)
                      |...++++.+..                     +.+...+..+...+.+.|++++|.++|+++.+.+......++..+..
T Consensus       199 A~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~  257 (389)
T PRK11788        199 ARALLKKALAAD---------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME  257 (389)
T ss_pred             HHHHHHHHHhHC---------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence            999888877654                     23456778888999999999999999999986542222456788999


Q ss_pred             HhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhhhh
Q 038758          297 ACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISV  352 (354)
Q Consensus       297 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~  352 (354)
                      ++...|+.+++         ..|+...+..+...+.+.|++++|.++++++.+  |+..+++.++..
T Consensus       258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            99999999887         567777789999999999999999999998876  998888887764

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=2.6e-15  Score=124.65  Aligned_cols=324  Identities=12%  Similarity=0.045  Sum_probs=221.6

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhh-----------------------------------------------hHH
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------------------------------NWT   34 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------------------------------~y~   34 (354)
                      ..+.-+++.|.+.|...++.+.-.|++.-+                                               +|.
T Consensus       132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s  211 (625)
T KOG4422|consen  132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS  211 (625)
T ss_pred             chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence            456778899999998888888877777666                                               888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG  114 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  114 (354)
                      +||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-.    +...+++..+|......||..|+|+++++.++.|
T Consensus       212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg  287 (625)
T KOG4422|consen  212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFG  287 (625)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence            999999998888999999988888877888888888887643    2233788888888888899999999999888888


Q ss_pred             ChhHHHHHHHhh---------ccccchhhHHHHHHHhcCchhH-HHHHhccCC--------C----CChhhhHHHHHHHH
Q 038758          115 RMEITSGLFEEM---------DQDFLVNNSLIDFYAKCRYLKV-SHCKFSKIK--------Q----KDLVSWNAMLAGYA  172 (354)
Q Consensus       115 ~~~~a~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~--------~----~~~~~~~~li~~~~  172 (354)
                      .++.|...+-+.         +|+..+|..+|.-+++.++..+ |..+..++.        +    .|..-|...|..|.
T Consensus       288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~  367 (625)
T KOG4422|consen  288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS  367 (625)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence            887766544433         6677777777777777666533 333332222        1    23444566666666


Q ss_pred             hCCChhHHHHHHHHHHhhhcC---CCCCc---chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhc
Q 038758          173 LGGFREEVTNLLDEMEMIQTD---MQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN  246 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~~~~~~---~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  246 (354)
                      +..+.+.|.++-.-.+. ..+   +.|+.   .=|..+....|+....+.-...|+.+.-.-.                 
T Consensus       368 ~l~d~~LA~~v~~ll~t-g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-----------------  429 (625)
T KOG4422|consen  368 SLRDLELAYQVHGLLKT-GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-----------------  429 (625)
T ss_pred             HhhhHHHHHHHHHHHHc-CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-----------------
Confidence            66777666666555431 111   22321   1244455555555555555555555444333                 


Q ss_pred             ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC-cccC-------------------
Q 038758          247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-ALPQ-------------------  306 (354)
Q Consensus       247 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~-------------------  306 (354)
                         -|+..+-..++++..-.|+++-.-++|.+++..|-.-+.....-++.-+++.. ....                   
T Consensus       430 ---~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e  506 (625)
T KOG4422|consen  430 ---FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE  506 (625)
T ss_pred             ---cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence               56777777788888888999999999999988886555555555555555544 1110                   


Q ss_pred             ----------ccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CCcccHHHhh
Q 038758          307 ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-----KNLVSWNVMI  350 (354)
Q Consensus       307 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li  350 (354)
                                +.+.+....+...-.+.|.|+.++|.++|..+.+     |.....|+|+
T Consensus       507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~  565 (625)
T KOG4422|consen  507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA  565 (625)
T ss_pred             HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence                      0455666778888899999999999999998843     5555666543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.72  E-value=1.9e-15  Score=140.88  Aligned_cols=300  Identities=8%  Similarity=-0.054  Sum_probs=205.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      ..++..+.+.|++++|..+++........+ ......++.+....|+++.|...++.+.+.. +.+...+..+...+...
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence            345666777788888888888777764333 2234444455566788888888888877664 44566677777778888


Q ss_pred             CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CCh-hhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL-VSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      |++++|...+++.    +.+...+..+...+...|++++|...++.+..  |+. ..+.. +..+.+.|++++|...++.
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence            8888888888776    33455667777778888888888877765532  332 22322 2346777888888888877


Q ss_pred             HHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHH----HHHHhcccC---
Q 038758          187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVIC----SCSVFNQLS---  249 (354)
Q Consensus       187 m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~----a~~~~~~~~---  249 (354)
                      +.  .....++...+..+..++.+.|+.++|...++...+.......          ..|++++    |...|++..   
T Consensus       203 ~l--~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        203 LL--PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HH--hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            65  3332233344444556677778888888877777765433222          5566664    666666654   


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcccCc---------cccchh-HHHHH
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAALPQG---------LGTGSF-VWNAL  318 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~~---------~~~~~~-~~~~l  318 (354)
                      +.+...+..+...+.+.|++++|+..+++..+.  .|+ ...+..+...+.+.|+++.+         ..|+.. .+..+
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            335668888899999999999999999998865  344 44566677888889998887         455543 34445


Q ss_pred             HHHHHhcCChhHHHHHhhcCCC
Q 038758          319 IDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ..++...|++++|.+.|++..+
T Consensus       359 a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6788999999999999998765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=6.6e-15  Score=127.64  Aligned_cols=303  Identities=11%  Similarity=0.130  Sum_probs=220.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce-ehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC-VKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~  110 (354)
                      +|..+-..+...|++++|+..++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+.  .|+.. ..+.+-..+
T Consensus       118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl  194 (966)
T KOG4626|consen  118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL  194 (966)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence            89999999999999999999999999864 235667888888888888888888888877765  33322 333444445


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC----------------------------
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----------------------------  158 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------------------------  158 (354)
                      -..|++++|...+.+.    +--...|+.|...+-..|+...|+..|++...                            
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~  274 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC  274 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence            5566666666666554    11233444444444444444444444444432                            


Q ss_pred             --------C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          159 --------K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       159 --------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                              | ....+..+...|-..|+.|.|++.|++..    .+.|+ ...|+.+..++-..|++.+|.+.+...+...
T Consensus       275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral----~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL----ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH----hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence                    2 23344555555666788888888888776    34565 5679999999999999999999999988877


Q ss_pred             ccccc----------ccchhHHHHHHhcccCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHH
Q 038758          229 IHLST----------ACGFVICSCSVFNQLST--R-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSV  294 (354)
Q Consensus       229 ~~~~~----------~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l  294 (354)
                      .....          ..|.+++|..+|.....  | -...+|.|-..|-++|+.++|+..|++..  .+.|+. ..|+.+
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~Nm  428 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNM  428 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhc
Confidence            66544          77888899888887652  2 34678899999999999999999999988  557875 456666


Q ss_pred             HHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758          295 LPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL  343 (354)
Q Consensus       295 i~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~  343 (354)
                      -..|-..|+.+.+         +.|. ....+-|...|-..|++.+|++-+++..+  ||.
T Consensus       429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence            6677777777766         5554 46788899999999999999999999887  664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.63  E-value=3.6e-13  Score=133.90  Aligned_cols=330  Identities=10%  Similarity=0.021  Sum_probs=236.6

Q ss_pred             hhhHHHHHHHHHhcccc-chhhhhhHhhhhh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc
Q 038758            2 ELGIQVHAHLIVCGVEL-CAFLGSQLLEVFC--NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL   78 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~--~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~   78 (354)
                      ++|...++...+..-.. ....|..++....  .....-..+.+.|++++|...|++..+.. +.+...+..+...+...
T Consensus       320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~  398 (1157)
T PRK11447        320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR  398 (1157)
T ss_pred             HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            35666666655543211 1123333433221  11222446778999999999999999874 33455677788899999


Q ss_pred             CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccc-------------cchhhHHHHHHHhcCc
Q 038758           79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD-------------FLVNNSLIDFYAKCRY  145 (354)
Q Consensus        79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~li~~~~~~~~  145 (354)
                      |++++|.+.|+...+.. +.+...+..+...|. .++.++|..+++.+.+.             ...+..+...+...|+
T Consensus       399 g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~  476 (1157)
T PRK11447        399 KDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK  476 (1157)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence            99999999999999764 445666777777775 46789999998877322             2234456778889999


Q ss_pred             hhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhh
Q 038758          146 LKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIH  221 (354)
Q Consensus       146 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~  221 (354)
                      +++|.+.|++..+  | +...+..+...|.+.|++++|...+++..  ..  .|+ ...+......+...++.++|...+
T Consensus       477 ~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al--~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l  552 (1157)
T PRK11447        477 WAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA--QQ--KPNDPEQVYAYGLYLSGSDRDRAALAHL  552 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc--CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999998864  4 45567778889999999999999999986  32  233 333333334456778888888877


Q ss_pred             hHhhhhccccc--------------------cccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          222 GYVLRHHIHLS--------------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       222 ~~~~~~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      +.+........                    ...|+.++|..+++.- +.+...+..+...+.+.|+.++|++.|++..+
T Consensus       553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~  631 (1157)
T PRK11447        553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT  631 (1157)
T ss_pred             HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            76543221111                    0678889999988843 44556777788899999999999999999987


Q ss_pred             cCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          282 ANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       282 ~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .. +.+...+..+...+...|+.+++         ..| +..++..+..++.+.|++++|.++++.+..
T Consensus       632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            53 33567788888899999998887         333 456677788889999999999999998865

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=3.2e-13  Score=112.43  Aligned_cols=263  Identities=11%  Similarity=0.113  Sum_probs=193.4

Q ss_pred             ccccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH
Q 038758           15 GVELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP   69 (354)
Q Consensus        15 g~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~   69 (354)
                      -..-+..+++.+|.++|                         +||.+|.+-.-...    .+++.+|.+..+.||..|||
T Consensus       202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence            33457788888888888                         78888776544332    78999999999999999999


Q ss_pred             HHHHHHhccCChhh----HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH-HHHHHhh-------------ccccc
Q 038758           70 KVYKACSELKDYRV----GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT-SGLFEEM-------------DQDFL  131 (354)
Q Consensus        70 ~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~-------------~~~~~  131 (354)
                      ++++...+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+. ..+..++             +.+..
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            99999999997765    568999999999999999999999999999988553 3333333             33455


Q ss_pred             hhhHHHHHHHhcCchhHHHHHhccCCC--------CC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcch
Q 038758          132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ--------KD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS  200 (354)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t  200 (354)
                      -|..-++.|.+..|.+-|.++..-...        |+   ..-|..+....|+....+....+|+.|.  -.-+-|+..+
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV--P~~y~p~~~~  435 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV--PSAYFPHSQT  435 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cceecCCchh
Confidence            566778888899999988887655542        22   2336677788888889999999999998  7788899999


Q ss_pred             HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------c-------cchhHH-----HHHHhccc-------
Q 038758          201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------A-------CGFVIC-----SCSVFNQL-------  248 (354)
Q Consensus       201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~-------~~~~~~-----a~~~~~~~-------  248 (354)
                      -..++++....|.++-..++|..+...|-....             +       ...+..     |..+++..       
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~  515 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ  515 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999998888877733322             0       001110     11111111       


Q ss_pred             C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          249 S--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       249 ~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                      .  .......+.+.-.+.+.|+.++|.+++.-+.+.+
T Consensus       516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~  552 (625)
T KOG4422|consen  516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH  552 (625)
T ss_pred             HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence            1  1233445556666778888888888888775543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.62  E-value=6.2e-13  Score=124.16  Aligned_cols=268  Identities=10%  Similarity=-0.085  Sum_probs=203.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+..+....|++++|...++++.+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+..++.
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~  155 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV  155 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            44555566678999999999999998864 3345567778888899999999999999998764 556778888999999


Q ss_pred             hcCChhHHHHHHHhh---cc-ccchhhHHHHHHHhcCchhHHHHHhccCCCC----ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          112 KCGRMEITSGLFEEM---DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      ..|++++|...++++   .| +...+..+ ..+.+.|++++|...++.+.+.    +...+..+...+.+.|++++|...
T Consensus       156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~  234 (656)
T PRK15174        156 LMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT  234 (656)
T ss_pred             HCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999877   23 33333333 3478899999999999886542    233445556788899999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc----cchhhhHhhhhcccccc----------ccchhHHHHHHhcccC
Q 038758          184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL----GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS  249 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~  249 (354)
                      ++...  ... +.+...+..+...+...|+.++    |...++...+.......          ..|++++|...+++..
T Consensus       235 ~~~al--~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        235 GESAL--ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHH--hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99987  332 2345566777888889999885    78888888876544322          7889999999888765


Q ss_pred             --CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh-HHHHHHHhhccCcccCc
Q 038758          250 --TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT-IVSVLPACLKLAALPQG  307 (354)
Q Consensus       250 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~~  307 (354)
                        .| +...+..+...+.+.|++++|+..|+++.+.  .|+... +..+..++...|+.+++
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence              34 4456777888999999999999999999865  455543 33345677888888776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.59  E-value=6.6e-13  Score=124.02  Aligned_cols=301  Identities=9%  Similarity=-0.006  Sum_probs=173.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+...-..+.+.|++++|...|++....  .|+...|..+..++...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4455566667777777777777776653  4566667777777777777777777777776653 334556666667777


Q ss_pred             hcCChhHHHHHHH-------------------------------------------------------------------
Q 038758          112 KCGRMEITSGLFE-------------------------------------------------------------------  124 (354)
Q Consensus       112 ~~g~~~~a~~~~~-------------------------------------------------------------------  124 (354)
                      ..|++++|..-|.                                                                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            7777766654332                                                                   


Q ss_pred             ---------------------------------hhc-------cccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-h
Q 038758          125 ---------------------------------EMD-------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-L  161 (354)
Q Consensus       125 ---------------------------------~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~  161 (354)
                                                       +.-       .....|..+...+...|++++|...|++..+  |+ .
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence                                             210       0111233344444555666666666655443  22 3


Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--------
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--------  233 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------  233 (354)
                      ..|..+...+...|++++|...|+...  .. -+.+...|..+...+...|++++|...++...+.......        
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al--~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKAL--KL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            345555555666666666666666654  22 1122445555556666666666666666666554432211        


Q ss_pred             --ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hh-------HHHHHHHhhc
Q 038758          234 --ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VT-------IVSVLPACLK  300 (354)
Q Consensus       234 --~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t-------~~~li~~~~~  300 (354)
                        +.|++++|+..|+...   +.+...|+.+...+...|++++|++.|++..+..  |+. .+       ++.....+..
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH
Confidence              5566777777766543   2345566667777777777777777777766432  211 01       1111111222


Q ss_pred             cCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          301 LAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       301 ~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .|+++++         ..|+ ...+..+...+.+.|++++|.+.|++..+
T Consensus       521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3555444         3333 34567777778888888888877776644

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.59  E-value=1.8e-12  Score=129.03  Aligned_cols=298  Identities=10%  Similarity=0.050  Sum_probs=205.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHH------------HHHHHhccCChhhHHHHHHHHHHhccCC
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPK------------VYKACSELKDYRVGKDVYDYMISIKFEG   98 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~   98 (354)
                      .+..+-..+.+.|++++|...|++..+...... ...+..            ....+.+.|++++|.+.|++..+.. +.
T Consensus       305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~  383 (1157)
T PRK11447        305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT  383 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence            566666777777777777777777766532211 111111            1234556777777777777777653 34


Q ss_pred             CceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCC------------hh
Q 038758           99 NACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD------------LV  162 (354)
Q Consensus        99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------~~  162 (354)
                      +...+..+..++...|++++|++.|++.    +.+...+..+...|. .++.++|...++.+....            ..
T Consensus       384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~  462 (1157)
T PRK11447        384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND  462 (1157)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence            4556666777777778888887777776    223344455555553 456677777776654311            12


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--------
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--------  233 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------  233 (354)
                      .+..+...+...|++++|.+.|++..  .  ..|+ ...+..+...+.+.|++++|...++.+.+.......        
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al--~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~  538 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRL--A--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY  538 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            24445667778999999999999987  3  3444 455667778899999999999999998875443222        


Q ss_pred             --ccchhHHHHHHhcccCCCC----c---------chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHh
Q 038758          234 --ACGFVICSCSVFNQLSTRD----V---------VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC  298 (354)
Q Consensus       234 --~~~~~~~a~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  298 (354)
                        ..++.++|...++.+....    .         ..+..+...+...|+.++|..+++.     .+++...+..+-..+
T Consensus       539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~  613 (1157)
T PRK11447        539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA  613 (1157)
T ss_pred             HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence              5788889999998875321    1         1122345678889999999999872     234555667788888


Q ss_pred             hccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          299 LKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       299 ~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .+.|+.+++         ..| +...+..+...|...|++++|.+.++...+
T Consensus       614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            899998887         344 578899999999999999999999998876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.58  E-value=4e-12  Score=121.15  Aligned_cols=302  Identities=8%  Similarity=-0.033  Sum_probs=186.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+...+...|++++|.+++++..+.. +.+...+..+...+...|++++|...++...+.. +.+.. +..+..++.
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~  127 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH
Confidence            35666677778888888888888877652 2234445666667778888888888888877663 44555 777777788


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----------------------------
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----------------------------  158 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------------------  158 (354)
                      ..|+.++|...+++.    +.+...+..+...+...+..++|.+.++....                             
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~  207 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE  207 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence            888888888888777    23334444555555555555555444443221                             


Q ss_pred             ----------------------CChh-hhH----HHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhh
Q 038758          159 ----------------------KDLV-SWN----AMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQ  210 (354)
Q Consensus       159 ----------------------~~~~-~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~  210 (354)
                                            |+.. .+.    ..+.++...|++++|...|+.+.  ..+.. |+. .-..+..++..
T Consensus       208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~-a~~~la~~yl~  284 (765)
T PRK10049        208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK--AEGQIIPPW-AQRWVASAYLK  284 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--ccCCCCCHH-HHHHHHHHHHh
Confidence                                  1111 010    01233456677778888888776  44321 322 11223556777


Q ss_pred             hcCccccchhhhHhhhhcccc-c---c----------ccchhHHHHHHhcccCC--C-------------C---cchHHH
Q 038758          211 VKGVKLGKAIHGYVLRHHIHL-S---T----------ACGFVICSCSVFNQLST--R-------------D---VVVWNS  258 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~-~---~----------~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~  258 (354)
                      .|++++|...++.+.+..... .   .          ..|++++|...++.+..  |             +   ...+..
T Consensus       285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~  364 (765)
T PRK10049        285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL  364 (765)
T ss_pred             cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence            788888888877776544221 0   0          55777777777776542  2             1   112344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCCh
Q 038758          259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAI  328 (354)
Q Consensus       259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~  328 (354)
                      +...+...|+.++|+++++++.... +-+...+..+...+...|+.+.+         ..|+ ...+......+.+.|++
T Consensus       365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~  443 (765)
T PRK10049        365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW  443 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence            5566777788888888888776542 33345556666677777777665         4454 55666667777788888


Q ss_pred             hHHHHHhhcCCC
Q 038758          329 QKSRKIFVLMPH  340 (354)
Q Consensus       329 ~~A~~~~~~m~~  340 (354)
                      ++|+++++++.+
T Consensus       444 ~~A~~~~~~ll~  455 (765)
T PRK10049        444 RQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877765

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.55  E-value=6.8e-13  Score=119.54  Aligned_cols=249  Identities=14%  Similarity=0.090  Sum_probs=189.7

Q ss_pred             HHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHH
Q 038758            6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK   85 (354)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~   85 (354)
                      .++..+...|+.|+..          ||..+|..||..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+.
T Consensus        11 nfla~~e~~gi~PnRv----------tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRV----------TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK   79 (1088)
T ss_pred             hHHHHHHHhcCCCchh----------hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence            4677889999999998          7778888889999999998 9999999888889999999999999999988887


Q ss_pred             HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--------------------------ccccchhhHHHHH
Q 038758           86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------------------------DQDFLVNNSLIDF  139 (354)
Q Consensus        86 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------------------~~~~~~~~~li~~  139 (354)
                                 .|-+.+|++|..+|...||+..-..+=+.|                          +.....-...+.-
T Consensus        80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill  148 (1088)
T KOG4318|consen   80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL  148 (1088)
T ss_pred             -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence                       788899999999999999987633222223                          1111111235555


Q ss_pred             HHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcccc
Q 038758          140 YAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG  217 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a  217 (354)
                      ....|-++.+.+++..++..  +. ++-.+++-+..  .+....++....+. -.+ .|++.+|..++++-...|+.+.|
T Consensus       149 lv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~--~ntpvekLl~~cks-l~e-~~~s~~l~a~l~~alaag~~d~A  223 (1088)
T KOG4318|consen  149 LVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVV--DNTPVEKLLNMCKS-LVE-APTSETLHAVLKRALAAGDVDGA  223 (1088)
T ss_pred             HHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhcc--CCchHHHHHHHHHH-hhc-CCChHHHHHHHHHHHhcCchhhH
Confidence            66667788888888777631  11 11112433332  34455666665542 233 79999999999999999999999


Q ss_pred             chhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758          218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA  297 (354)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  297 (354)
                      ..+...|.+.|+                    +-+.+.|-.|+-+   .++...++.+.+-|.+.|+.|+..|+...+..
T Consensus       224 k~ll~emke~gf--------------------pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip  280 (1088)
T KOG4318|consen  224 KNLLYEMKEKGF--------------------PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP  280 (1088)
T ss_pred             HHHHHHHHHcCC--------------------Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence            999999999999                    5566666666665   78888999999999999999999999988888


Q ss_pred             hhccCcc
Q 038758          298 CLKLAAL  304 (354)
Q Consensus       298 ~~~~~~~  304 (354)
                      +...|..
T Consensus       281 ~l~N~~t  287 (1088)
T KOG4318|consen  281 QLSNGQT  287 (1088)
T ss_pred             hhcchhh
Confidence            8775543

>PF13041 PPR_2: PPR repeat family

Probab=99.54  E-value=2.1e-14  Score=86.24  Aligned_cols=50  Identities=28%  Similarity=0.547  Sum_probs=47.9

Q ss_pred             CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758          251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK  300 (354)
Q Consensus       251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  300 (354)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999988875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.51  E-value=3.3e-14  Score=119.62  Aligned_cols=250  Identities=16%  Similarity=0.194  Sum_probs=100.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      -..+.+.|++++|+++++.-.....+|+... |..+.......++++.|.+.++.+.+.+ +-++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            4567788999999999976555432344444 4445556667889999999999998876 4467778888888 79999


Q ss_pred             hhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCC-----CCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          116 MEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-----QKDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       116 ~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      +++|.+++++.   .++...+...+..+.+.++++++.++++...     .++...|..+...+.+.|++++|.+.+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999888776   4556667778888899999999999887743     246667888888889999999999999988


Q ss_pred             HhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758          188 EMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS  266 (354)
Q Consensus       188 ~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  266 (354)
                      .    ...|+ ......++..+...|+.+++..++....+..                     +.|...|..+..++...
T Consensus       173 l----~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  173 L----ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---------------------PDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             H----HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------------HTSCCHCHHHHHHHHHH
T ss_pred             H----HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---------------------cCHHHHHHHHHHHhccc
Confidence            6    23454 5567778888888888888777777766654                     34566788899999999


Q ss_pred             CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcC
Q 038758          267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM  338 (354)
Q Consensus       267 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  338 (354)
                      |+.++|+..|++..+.  .|+..+                       +...+.+++...|+.++|.++..+.
T Consensus       228 g~~~~Al~~~~~~~~~--~p~d~~-----------------------~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  228 GRYEEALEYLEKALKL--NPDDPL-----------------------WLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             T-HHHHHHHHHHHHHH--STT-HH-----------------------HHHHHHHHHT---------------
T ss_pred             cccccccccccccccc--cccccc-----------------------ccccccccccccccccccccccccc
Confidence            9999999999998764  454333                       3667788888888888888887654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=4.9e-12  Score=118.22  Aligned_cols=227  Identities=12%  Similarity=0.040  Sum_probs=148.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .|+.+-..+...|++++|...+++..+.  .|+ ...|..+...+...|++++|...|+...+.. +.+..++..+...+
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~  409 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            4566666677778888888887777764  333 3356666667777778888888777776653 44566777777777


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      ...|++++|...|++.    +.+...+..+...+.+.|++++|+..|++..+  | +...|+.+...+...|++++|.+.
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            7778888888777776    33445566677777777888888777776543  3 355677777777777888888777


Q ss_pred             HHHHHhhhcCCCCCcc----hHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHH
Q 038758          184 LDEMEMIQTDMQPNTI----SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI  259 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  259 (354)
                      |+.......+..+...    .++..+..+...|++++|..+++...+..                     +.+...+..+
T Consensus       490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---------------------p~~~~a~~~l  548 (615)
T TIGR00990       490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID---------------------PECDIAVATM  548 (615)
T ss_pred             HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------------------CCcHHHHHHH
Confidence            7776511111111100    01111112223456666666655544432                     2344578889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 038758          260 ISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       260 i~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      ...+.+.|++++|+..|++..+.
T Consensus       549 a~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       549 AQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999998754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.50  E-value=1.6e-11  Score=117.16  Aligned_cols=305  Identities=10%  Similarity=-0.005  Sum_probs=221.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG  114 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  114 (354)
                      -.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++...+.. +.+...+..+..++...|
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            44667788999999999999998632 3445568889999999999999999999988764 556677888999999999


Q ss_pred             ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHH--
Q 038758          115 RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLD--  185 (354)
Q Consensus       115 ~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~--  185 (354)
                      ++++|...+++.    +.+.. +..+...+...|+.++|...+++..+  |+ ...+..+..++.+.+..++|++.++  
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            999999999998    44455 88888999999999999999998875  43 3344555666666666665554444  


Q ss_pred             --------------------------------------------HHHhhhcCCCCCcc-hHHH----HHHHhhhhcCccc
Q 038758          186 --------------------------------------------EMEMIQTDMQPNTI-SLSG----VLAACAQVKGVKL  216 (354)
Q Consensus       186 --------------------------------------------~m~~~~~~~~p~~~-t~~~----ll~~~~~~~~~~~  216 (354)
                                                                  .+.. .....|+.. .+..    .+.++...|+.++
T Consensus       177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~-~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e  255 (765)
T PRK10049        177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA-LWHDNPDATADYQRARIDRLGALLARDRYKD  255 (765)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence                                                        3321 001122221 1111    1334556788899


Q ss_pred             cchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCC--CC-----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758          217 GKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLST--RD-----VVVWNSIISAFVRSGQVVDALDLLRD  278 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~a~~~~~~  278 (354)
                      |...|+.+.+.+.+.+.           ..|+.++|+..|+++..  |.     ...+..+..++...|++++|..++++
T Consensus       256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~  335 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH  335 (765)
T ss_pred             HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            99999998887632111           78889999999888652  22     12355566678899999999999999


Q ss_pred             HHHcC-----------cCCCH---hhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHhcCChhHHHHH
Q 038758          279 VIVAN-----------VKPNT---VTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGRCGAIQKSRKI  334 (354)
Q Consensus       279 m~~~g-----------~~p~~---~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~  334 (354)
                      +.+..           -.|+.   ..+..+...+...|+.++|          .+-+...+..+...+...|++++|++.
T Consensus       336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~  415 (765)
T PRK10049        336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE  415 (765)
T ss_pred             HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            87642           11332   2344566677888888877          344677888999999999999999999


Q ss_pred             hhcCCC--CCc
Q 038758          335 FVLMPH--KNL  343 (354)
Q Consensus       335 ~~~m~~--~~~  343 (354)
                      +++..+  ||.
T Consensus       416 l~~al~l~Pd~  426 (765)
T PRK10049        416 LKKAEVLEPRN  426 (765)
T ss_pred             HHHHHhhCCCC
Confidence            998887  654

>PF13041 PPR_2: PPR repeat family

Probab=99.49  E-value=5.8e-14  Score=84.26  Aligned_cols=50  Identities=24%  Similarity=0.541  Sum_probs=48.6

Q ss_pred             CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      ||+.+||++|.+|++.|++++|.++|++|+  +.|++||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence            799999999999999999999999999999  99999999999999999985

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.45  E-value=6e-11  Score=114.02  Aligned_cols=165  Identities=8%  Similarity=-0.049  Sum_probs=117.5

Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------cc---chhH
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------AC---GFVI  239 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~---~~~~  239 (354)
                      .+...|++++|...|+.+.  ..  .|+...+..+..++.+.|+.+.|...++...+.......       ..   |+++
T Consensus       518 al~~~Gr~eeAi~~~rka~--~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~  593 (987)
T PRK09782        518 QAYQVEDYATALAAWQKIS--LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE  593 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHh--cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence            3346777777777777764  22  344444555556677778888888888777765432222       23   8888


Q ss_pred             HHHHHhcccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc---------
Q 038758          240 CSCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG---------  307 (354)
Q Consensus       240 ~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~---------  307 (354)
                      +|...+++..  .|+...|..+...+.+.|+.++|+..+++..+.  .|+. ..+..+-..+...|+.+++         
T Consensus       594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888776  466777888888888888888888888888755  4544 4455566678888887776         


Q ss_pred             ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          308 LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       308 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ..| +...+..+..++.+.|++++|...+++..+
T Consensus       672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            344 567788888889999999999998888765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.39  E-value=2.6e-10  Score=100.56  Aligned_cols=275  Identities=9%  Similarity=0.034  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHh--cCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehh--hH
Q 038758           32 NWTSMMGMYNV--LGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR--PL  106 (354)
Q Consensus        32 ~y~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l  106 (354)
                      .+..+..+...  .|++++|.+.+....+.+  ++... |.....+..+.|+++.+.+.+..+.+.  .|+.....  ..
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~  159 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITR  159 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence            34444444332  589999988877765542  12222 333344447888999999999888764  55554333  33


Q ss_pred             HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC---Ch--------hhhHHHHHHH
Q 038758          107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DL--------VSWNAMLAGY  171 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--------~~~~~li~~~  171 (354)
                      ...+...|+++.|.+.++++    +.+......+...|.+.|++++|.+++..+.+.   +.        .+|..++...
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999988887    445667788888999999999999888877642   11        1333444444


Q ss_pred             HhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------ccchhHHHHHH
Q 038758          172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------ACGFVICSCSV  244 (354)
Q Consensus       172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~  244 (354)
                      ....+.+...++++...   ...+.+......+..++...|+.++|..++....+....+..       ..++.+++.+.
T Consensus       240 ~~~~~~~~l~~~w~~lp---~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~  316 (398)
T PRK10747        240 MADQGSEGLKRWWKNQS---RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKV  316 (398)
T ss_pred             HHhcCHHHHHHHHHhCC---HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHH
Confidence            45555666677777663   233456667777888888889999998888877774432221       33444555544


Q ss_pred             hcccC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHH
Q 038758          245 FNQLS--TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM  321 (354)
Q Consensus       245 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~  321 (354)
                      .++..  .| |...+..+-..+.+.+++++|.+.|+...+.  .|+..+                        +..+...
T Consensus       317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~------------------------~~~La~~  370 (398)
T PRK10747        317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYD------------------------YAWLADA  370 (398)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH------------------------HHHHHHH
Confidence            44433  22 3334555556666666666666666666643  455544                        7788889


Q ss_pred             HHhcCChhHHHHHhhcCC
Q 038758          322 YGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       322 ~~~~g~~~~A~~~~~~m~  339 (354)
                      +.+.|+.++|.+++++-.
T Consensus       371 ~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        371 LDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            999999999999887653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.38  E-value=2.2e-10  Score=108.10  Aligned_cols=297  Identities=9%  Similarity=-0.019  Sum_probs=209.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc--ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhH--
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPL--  106 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l--  106 (354)
                      .|...| ...+.|+++.|++.|++..+.  .|+.  ..+ .++..+...|+.++|...++...    .|+ ...+..+  
T Consensus        37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llal  108 (822)
T PRK14574         37 QYDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASA  108 (822)
T ss_pred             HHHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHH
Confidence            344443 456889999999999999876  4554  234 88888889999999999999887    332 3333333  


Q ss_pred             HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHH
Q 038758          107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEV  180 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a  180 (354)
                      ...|...|++++|.++|+++    +.+...+..++..+...++.++|++.++++..  |+...+-.++..+...++..+|
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence            56888889999999999999    44567777888999999999999999999986  4444443333333335666669


Q ss_pred             HHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc---------------------ccch-
Q 038758          181 TNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---------------------ACGF-  237 (354)
Q Consensus       181 ~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------~~~~-  237 (354)
                      ++.++++.  ..  .|+ ...+..++.++.+.|-...|.++..+-...-.+.+.                     ...+ 
T Consensus       189 L~~~ekll--~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~  264 (822)
T PRK14574        189 LQASSEAV--RL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF  264 (822)
T ss_pred             HHHHHHHH--Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999997  33  454 556677788888888887777766543321111110                     1122 


Q ss_pred             --hHHHHHHhcccCC-----CCc-chH----HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCccc
Q 038758          238 --VICSCSVFNQLST-----RDV-VVW----NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP  305 (354)
Q Consensus       238 --~~~a~~~~~~~~~-----~~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~  305 (354)
                        .+.|+.-++.+..     |.. ..|    --.+-++...|++.+|++.|+.|...|.+.-...-..+..+|...+.++
T Consensus       265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~  344 (822)
T PRK14574        265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence              2334444444321     321 122    2345678899999999999999998886544457778889999999888


Q ss_pred             Cc-------cc---------cchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          306 QG-------LG---------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       306 ~~-------~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ++       +.         ++......|..+|...|++++|..+++++.+
T Consensus       345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            87       11         1333357889999999999999999999987

>TIGR00540 hemY_coli hemY protein

Probab=99.37  E-value=5.8e-10  Score=98.88  Aligned_cols=62  Identities=10%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHH
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRK  333 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  333 (354)
                      ....++-..+.+.|++++|.+.|+........|+...                        +..+...+.+.|+.++|.+
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~------------------------~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND------------------------LAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH------------------------HHHHHHHHHHcCCHHHHHH
Confidence            4555777888888999999998885444344677665                        6688889999999999999


Q ss_pred             HhhcCC
Q 038758          334 IFVLMP  339 (354)
Q Consensus       334 ~~~~m~  339 (354)
                      ++++-.
T Consensus       392 ~~~~~l  397 (409)
T TIGR00540       392 MRQDSL  397 (409)
T ss_pred             HHHHHH
Confidence            998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.37  E-value=9.4e-11  Score=102.39  Aligned_cols=269  Identities=12%  Similarity=0.118  Sum_probs=212.1

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchh-hHHHHHH
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVN-NSLIDFY  140 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~-~~li~~~  140 (354)
                      ..+|..+...+-..|+++.|..+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.   .|+.... +.+...+
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl  194 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL  194 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence            4467778888888999999999999998875 556778999999999999999998888765   4443333 3455556


Q ss_pred             HhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccc
Q 038758          141 AKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~  216 (354)
                      ...|++++|...+.+..+  |. ...|..|-..+-..|+...|++-|++..    .+.|+ ...|-.+-..|...+.++.
T Consensus       195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV----KLDPNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh----cCCCcchHHHhhHHHHHHHHhcchH
Confidence            667888888888876653  43 4568888888999999999999999887    45565 4568888888888999999


Q ss_pred             cchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          217 GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--TRD-VVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                      |...+............          ..|.++-|+..|++..  .|+ ...||.|..++-..|++.+|++.|.+.... 
T Consensus       271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-  349 (966)
T KOG4626|consen  271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-  349 (966)
T ss_pred             HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence            99888887766544433          8899999999999876  343 478999999999999999999999998854 


Q ss_pred             cCCCH-hhHHHHHHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          284 VKPNT-VTIVSVLPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       284 ~~p~~-~t~~~li~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                       .|+. ...+.|-..+...|.++.+         +.|. ....+-|...|-+.|++++|...+++..+
T Consensus       350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence             4543 4677888888899988887         3343 45677888888888888888888888776

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.34  E-value=1.6e-12  Score=109.40  Aligned_cols=220  Identities=15%  Similarity=0.144  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      |..+-......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+.  .++...+..++..+.+
T Consensus        47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~  122 (280)
T PF13429_consen   47 WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYR  122 (280)
T ss_dssp             ---------------------------------------------------------------------------H-HHH
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHH
Confidence            344445566789999999999999987633 56667777777 7889999999999877654  3566778889999999


Q ss_pred             cCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          113 CGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       113 ~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      .++++++.++++++      +.+...|..+...+.+.|+.++|++.+++..+  | |....+.++..+...|+.+++.++
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~  202 (280)
T PF13429_consen  123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA  202 (280)
T ss_dssp             TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            99999999999997      34556778888999999999999999998874  5 466788899999999999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHH
Q 038758          184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF  263 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  263 (354)
                      ++...  ... +.|...+..+..++...|+.++|...++...+..                     +.|......+..++
T Consensus       203 l~~~~--~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---------------------p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  203 LKRLL--KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---------------------PDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHH--HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHH
T ss_pred             HHHHH--HHC-cCHHHHHHHHHHHhcccccccccccccccccccc---------------------cccccccccccccc
Confidence            99886  333 5666777888899999999999999999988765                     45777788889999


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 038758          264 VRSGQVVDALDLLRDVI  280 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~  280 (354)
                      ...|+.++|.++.++..
T Consensus       259 ~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  259 EQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             T----------------
T ss_pred             ccccccccccccccccc
Confidence            99999999999988764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.31  E-value=4.6e-09  Score=99.29  Aligned_cols=297  Identities=8%  Similarity=-0.046  Sum_probs=147.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ..+...|++++|+++|+++.+.. +-+...+..+...+...++.++|.+.++.+.+.  .|+...+..++..+...++..
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~  186 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY  186 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence            35556677777777777776653 222344555566666677777777777666654  344444433333333344444


Q ss_pred             HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----------------------------------
Q 038758          118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----------------------------------  158 (354)
Q Consensus       118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------------------------  158 (354)
                      +|.+.++++    +.+...+..+..++.+.|-...|.++..+-+.                                   
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            466666666    22333444444444444444444444332220                                   


Q ss_pred             ------------------CChh-hh----HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758          159 ------------------KDLV-SW----NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK  215 (354)
Q Consensus       159 ------------------~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~  215 (354)
                                        |... .|    --.+-++...|++.++.+.|+.++  ..+.+.-..+-..+..+|...+.++
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~--~~~~~~P~y~~~a~adayl~~~~P~  344 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME--AEGYKMPDYARRWAASAYIDRRLPE  344 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--hcCCCCCHHHHHHHHHHHHhcCCcH
Confidence                              1100 01    112334555666666666666666  5554433445566666666666666


Q ss_pred             ccchhhhHhhhhcccc-----cc-----------ccchhHHHHHHhcccCC--C-------------Cc---chHHHHHH
Q 038758          216 LGKAIHGYVLRHHIHL-----ST-----------ACGFVICSCSVFNQLST--R-------------DV---VVWNSIIS  261 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~-----~~-----------~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~li~  261 (354)
                      +|..++..+.+...+.     +.           ..+++++|..+++.+..  |             |.   ..+..++.
T Consensus       345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~  424 (822)
T PRK14574        345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ  424 (822)
T ss_pred             HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence            6666666665433110     00           44555555555554431  1             00   11222344


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHH
Q 038758          262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKS  331 (354)
Q Consensus       262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A  331 (354)
                      .+...|+..+|++.++++.... +-|......+-..+...|.+..+         ..| +..+......++...|++++|
T Consensus       425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A  503 (822)
T PRK14574        425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM  503 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence            4555555555555555554321 22333444444444444444443         333 334445555555556666666


Q ss_pred             HHHhhcCCC
Q 038758          332 RKIFVLMPH  340 (354)
Q Consensus       332 ~~~~~~m~~  340 (354)
                      .++.+...+
T Consensus       504 ~~~~~~l~~  512 (822)
T PRK14574        504 ELLTDDVIS  512 (822)
T ss_pred             HHHHHHHHh
Confidence            555544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.31  E-value=9.6e-10  Score=91.35  Aligned_cols=267  Identities=9%  Similarity=0.072  Sum_probs=199.3

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      .|++.+|..+..+-.+.+-.| ...|..-..+..+.|+.+.+.+++.+..+..-.++..+.-+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            489999999999988877444 3346666777788999999999999998874467777788888899999999999988


Q ss_pred             HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC-----------ChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-----------DLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      ++++    +....+......+|.+.|++.+...+...+.+.           -..+|+.++.-....+..+.-...|+..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            8887    567778888999999999999999999888752           2246777777777666676666677766


Q ss_pred             HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------ccchhHHHHHHhc---ccCCCCcchHH
Q 038758          188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------ACGFVICSCSVFN---QLSTRDVVVWN  257 (354)
Q Consensus       188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~---~~~~~~~~~~~  257 (354)
                         ....+-++..-..++.-+.+.|+.+.|.++..+..+.+.++..       +.++.+.-++..+   +-.+.+...+.
T Consensus       256 ---pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~  332 (400)
T COG3071         256 ---PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS  332 (400)
T ss_pred             ---cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence               3344555566667777788888888998888888887775543       2222222222222   22233456777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758          258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                      +|-..|.+++.+.+|...|+...+.  +|+..+                        |+.+.++|.+.|+..+|.++.++
T Consensus       333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~------------------------~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         333 TLGRLALKNKLWGKASEALEAALKL--RPSASD------------------------YAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhh------------------------HHHHHHHHHHcCChHHHHHHHHH
Confidence            7888888888888888888866543  566665                        88899999999999999988876


Q ss_pred             CC
Q 038758          338 MP  339 (354)
Q Consensus       338 m~  339 (354)
                      -.
T Consensus       387 ~L  388 (400)
T COG3071         387 AL  388 (400)
T ss_pred             HH
Confidence            54

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=2.8e-11  Score=109.36  Aligned_cols=259  Identities=12%  Similarity=0.070  Sum_probs=167.7

Q ss_pred             HHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhcccc
Q 038758           51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF  130 (354)
Q Consensus        51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  130 (354)
                      .++..+...|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+...++.++.+....|+.+.+.      .|..
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ep~a   83 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------EPLA   83 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------CCch
Confidence            56778889999999999999999999999999998 9999998888889999999999999999999988      6888


Q ss_pred             chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      .+|+.|..+|...||+..-+.+ ++       -...++..+...|--.....++..+.. ..+.-||..+-..+   ..-
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~v-eq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n~ill---lv~  151 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVV-EQ-------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAENAILL---LVL  151 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHH-HH-------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHHHHHH---HHH
Confidence            8999999999999997652221 11       111222333333333333333333221 22333332221110   111


Q ss_pred             hcCccccchhhhHh------------hhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758          211 VKGVKLGKAIHGYV------------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD  278 (354)
Q Consensus       211 ~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  278 (354)
                      .|-++.+.++...+            ++....+......+....+.+..  .|+..+|.++++.-...|+.+.|..++.+
T Consensus       152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~e  229 (1088)
T KOG4318|consen  152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYE  229 (1088)
T ss_pred             HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            11111111111111            11111110011111111112222  58999999999999999999999999999


Q ss_pred             HHHcCcCCCHhhHHHHHHHhh--------ccCcccCccccchhHHHHHHHHHHhcCChhH
Q 038758          279 VIVANVKPNTVTIVSVLPACL--------KLAALPQGLGTGSFVWNALIDMYGRCGAIQK  330 (354)
Q Consensus       279 m~~~g~~p~~~t~~~li~~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  330 (354)
                      |.+.|++.+..-|+.|+-+-.        ..|.-+.|+.|+..|+.-.+..+..+|....
T Consensus       230 mke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~  289 (1088)
T KOG4318|consen  230 MKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY  289 (1088)
T ss_pred             HHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence            999999999988888887621        1223344588998888887777777665443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=8.9e-10  Score=106.13  Aligned_cols=224  Identities=10%  Similarity=0.034  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      |..+-..+.. +++++|...+.+....  .|+......+...+...|++++|...|+.+...  +|+...+..+..++.+
T Consensus       480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~  554 (987)
T PRK09782        480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA  554 (987)
T ss_pred             HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence            3444444443 5666677766665544  344433333333445667777777777665432  3444445555666667


Q ss_pred             cCChhHHHHHHHhhcc-ccchhh---HHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          113 CGRMEITSGLFEEMDQ-DFLVNN---SLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       113 ~g~~~~a~~~~~~~~~-~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      .|+.++|.+.+++... +....+   .+.....+.|++++|...+++..+  |+...|..+...+.+.|++++|...|+.
T Consensus       555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~  634 (987)
T PRK09782        555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA  634 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777777766511 111111   122222334777777777766653  5555666666667777777777777776


Q ss_pred             HHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758          187 MEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR  265 (354)
Q Consensus       187 m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  265 (354)
                      ..    ...|+ ...+..+-.++...|+.++|...++...+..                     +.+...+..+-.++..
T Consensus       635 AL----~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---------------------P~~~~a~~nLA~al~~  689 (987)
T PRK09782        635 AL----ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL---------------------PDDPALIRQLAYVNQR  689 (987)
T ss_pred             HH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHH
Confidence            65    22343 3344445556666667777766666665543                     2345667777777777


Q ss_pred             cCCHHHHHHHHHHHHHcCcCCCH
Q 038758          266 SGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       266 ~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      .|++++|+..|++..+.  .|+.
T Consensus       690 lGd~~eA~~~l~~Al~l--~P~~  710 (987)
T PRK09782        690 LDDMAATQHYARLVIDD--IDNQ  710 (987)
T ss_pred             CCCHHHHHHHHHHHHhc--CCCC
Confidence            78888888877777644  3543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.28  E-value=2.5e-09  Score=97.29  Aligned_cols=298  Identities=12%  Similarity=0.069  Sum_probs=216.6

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      .|++++|.+++.+..... +.+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+-....+.|.++.|.-.
T Consensus       152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence            399999999999998875 4566679999999999999998887765544333 55677888888889999999999999


Q ss_pred             HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCCh--------hhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL--------VSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      |.+.    +++...+---...|-+.|+...|..-|.++-+.++        .+--..+..|...++-+.|.+.++.... 
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-  308 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-  308 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-
Confidence            9887    33444444556788889999999988887765322        1222345667777777888888887763 


Q ss_pred             hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------------------------------
Q 038758          191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------------------------------  233 (354)
Q Consensus       191 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------  233 (354)
                      ..+-..+...++++...+.+....+.+............+.+.                                     
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~  388 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV  388 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence            3445556677778888888777777777666655552222222                                     


Q ss_pred             --ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758          234 --ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       234 --~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~  307 (354)
                        +.+...+++..|-...    .-+...|.-+..+|...|++.+|+.+|..+...-..-+...|..+-.+|-..|..+.|
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A  468 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA  468 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence              2233333333322221    2245677888899999999999999999998765445566788888888888988887


Q ss_pred             ---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCCCCc
Q 038758          308 ---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL  343 (354)
Q Consensus       308 ---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  343 (354)
                               ..| +..+--+|-..+-+.|++++|.+.++.|..||.
T Consensus       469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~  514 (895)
T KOG2076|consen  469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG  514 (895)
T ss_pred             HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence                     334 455666788889999999999999999988773

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.2e-09  Score=96.32  Aligned_cols=263  Identities=11%  Similarity=0.048  Sum_probs=142.6

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChh-HHHHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRME-ITSGL  122 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~-~a~~~  122 (354)
                      .++|...|.....+ +.-+......+..+|...+++++|+++|+.+.+..  ..-+..+|.+.+.-+-+.-... -|..+
T Consensus       335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            44566666664433 12222334445556666666666666666665442  1123445555544433322211 23333


Q ss_pred             HHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758          123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI  199 (354)
Q Consensus       123 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~  199 (354)
                      .+..+.++.+|-++.++|.-.++.+.|++.|++..+.   ..++|+.+-.-+....++|+|...|+...      ..|..
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------~~~~r  487 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------GVDPR  487 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh------cCCch
Confidence            3444555556666666666666666666666555542   23445544445555555555555554443      23333


Q ss_pred             hHHHH---HHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHH
Q 038758          200 SLSGV---LAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAF  263 (354)
Q Consensus       200 t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~  263 (354)
                      .|++.   ...|.+.+.++.|+-.|+...+.+.....          +.|+.++|+.+|++..   ..|...---....+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence            44432   23355555555555555555544432222          4444444444444432   33444444445666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ...++.++|+..++++++.  .|+..+                       +|..+...|-+.|+.+.|..-|--+.+
T Consensus       568 ~~~~~~~eal~~LEeLk~~--vP~es~-----------------------v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  568 FSLGRYVEALQELEELKEL--VPQESS-----------------------VFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HhhcchHHHHHHHHHHHHh--CcchHH-----------------------HHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            6778888888888888743  676654                       477788888889999999888877766

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.26  E-value=4.8e-10  Score=91.51  Aligned_cols=190  Identities=13%  Similarity=0.051  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            67778889999999999999999998764 3345667888888999999999999999998875 456667888899999


Q ss_pred             hcCChhHHHHHHHhhc------cccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHH
Q 038758          112 KCGRMEITSGLFEEMD------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      ..|++++|.+.+++..      .....+..+...+...|++++|...|++...  | +...+..+...+...|++++|.+
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999982      2234566778889999999999999987764  3 45678888899999999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      .+++..  .. .+.+...+......+...|+.+.+..+.+.+.+
T Consensus       191 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       191 YLERYQ--QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHH--Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999997  43 334455666677777888888888887766544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.22  E-value=2.7e-09  Score=94.23  Aligned_cols=236  Identities=9%  Similarity=-0.014  Sum_probs=184.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH--HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP--KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG  114 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  114 (354)
                      ..+..+.|+++.+.+.+.++.+.  .|+.....  .....+...|+++.|.+.++.+.+.. +-++.....+...|.+.|
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g  201 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            44557999999999999999874  56665444  33567889999999999999998876 667788999999999999


Q ss_pred             ChhHHHHHHHhhccc----c--------chhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhH
Q 038758          115 RMEITSGLFEEMDQD----F--------LVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREE  179 (354)
Q Consensus       115 ~~~~a~~~~~~~~~~----~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  179 (354)
                      ++++|.+++..+...    .        .+|..++.......+.+...++++..+.   .++.....+..++...|+.++
T Consensus       202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~  281 (398)
T PRK10747        202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT  281 (398)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999998311    1        2334445555556667788888888864   467778888999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC
Q 038758          180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS  249 (354)
Q Consensus       180 a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~  249 (354)
                      |.+++++..  +  ..|+..  -..+.+....++.+++.+..+...+...+...          ..+++++|.+.|+...
T Consensus       282 A~~~L~~~l--~--~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al  355 (398)
T PRK10747        282 AQQIILDGL--K--RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL  355 (398)
T ss_pred             HHHHHHHHH--h--cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999998886  4  344442  12334444568888888888888877665544          8899999999999886


Q ss_pred             --CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          250 --TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       250 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                        .|+...|..+...+.+.|+.++|.++|++-..
T Consensus       356 ~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        356 KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              68888889999999999999999999998753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.9e-09  Score=87.23  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=184.9

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~  118 (354)
                      -+++.++|.++|-+|.+.. +-+..+.-+|-+.|.+.|.++.|+++.+.+.+..--+.   ......|..=|...|-+|.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3588999999999998753 33445566788888999999999999999886421111   2234456677888999999


Q ss_pred             HHHHHHhhcc----ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhh--------hHHHHHHHHhCCChhHHHHHHHH
Q 038758          119 TSGLFEEMDQ----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS--------WNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       119 a~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      |+.+|..+..    .......|+..|-...+|++|+++-+++...+..+        |.-+...+....+.+.|..++..
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999998832    33455678899999999999999888776544444        44444455556788888888887


Q ss_pred             HHhhhcCCCCCcchHH-HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758          187 MEMIQTDMQPNTISLS-GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR  265 (354)
Q Consensus       187 m~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  265 (354)
                      ..  .  ..|+..--+ ++-+.....|+++.|.+.++.+.+.+.                    .--..+...|..+|.+
T Consensus       206 Al--q--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--------------------~yl~evl~~L~~~Y~~  261 (389)
T COG2956         206 AL--Q--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP--------------------EYLSEVLEMLYECYAQ  261 (389)
T ss_pred             HH--h--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh--------------------HHHHHHHHHHHHHHHH
Confidence            76  2  233333333 334456778888888888888887765                    2334567788999999


Q ss_pred             cCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHHhc---CChhHHHH
Q 038758          266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYGRC---GAIQKSRK  333 (354)
Q Consensus       266 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~---g~~~~A~~  333 (354)
                      .|+.++....+..+.+....++..  ..+-..-....-.+.|         -+|+...+..||+.-...   |...+...
T Consensus       262 lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~  339 (389)
T COG2956         262 LGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLD  339 (389)
T ss_pred             hCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHH
Confidence            999999999999998764444332  1222111111111111         689999999999876543   34455555


Q ss_pred             HhhcCC
Q 038758          334 IFVLMP  339 (354)
Q Consensus       334 ~~~~m~  339 (354)
                      ++.+|.
T Consensus       340 ~lr~mv  345 (389)
T COG2956         340 LLRDMV  345 (389)
T ss_pred             HHHHHH
Confidence            566554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.4e-09  Score=86.60  Aligned_cols=259  Identities=12%  Similarity=0.100  Sum_probs=180.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--cccc------chhhHHHHH
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDF------LVNNSLIDF  139 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~------~~~~~li~~  139 (354)
                      |..=++.+ -.++.++|.+.|-+|.+.. +-+..+--+|.+.|...|..|.|+++-+.+  .||.      ...-.|..=
T Consensus        39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            44434333 3468899999999999853 556667778999999999999999999988  2222      222346677


Q ss_pred             HHhcCchhHHHHHhccCCCCC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc----hHHHHHHHhhhhc
Q 038758          140 YAKCRYLKVSHCKFSKIKQKD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI----SLSGVLAACAQVK  212 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~  212 (354)
                      |...|-+|.|+.+|..+.+.+   ......|+..|-...+|++|.++-++..  +.+-.+...    .|.-+...+....
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq~~~~~~  194 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQQALASS  194 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHHHHhhhh
Confidence            889999999999999988633   3456678999999999999999999887  555554432    2333344444456


Q ss_pred             CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758          213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV  292 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  292 (354)
                      +.+.|..++....+..                     +..+..=-.+-+.+...|++++|.+.|+...+.+..--..+..
T Consensus       195 ~~d~A~~~l~kAlqa~---------------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         195 DVDRARELLKKALQAD---------------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             hHHHHHHHHHHHHhhC---------------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence            6777777776666654                     2233333344567888999999999999999886555567788


Q ss_pred             HHHHHhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHHh-hcCCC-CCcccHHHhhh
Q 038758          293 SVLPACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKIF-VLMPH-KNLVSWNVMIS  351 (354)
Q Consensus       293 ~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~-~~~~~~~~li~  351 (354)
                      .|..+|.+.|+.+++         ..+++..-..+-+.-....-.+.|...+ +.+.+ |+...+..+|.
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~  323 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD  323 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence            899999999998886         3444444445544443333344454444 44444 88777777664

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.19  E-value=1.5e-09  Score=88.57  Aligned_cols=193  Identities=13%  Similarity=-0.013  Sum_probs=154.9

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF  139 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~  139 (354)
                      ....+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+++.    +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            34567778888999999999999999998764 455677888999999999999999999987    3445677788889


Q ss_pred             HHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758          140 YAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV  214 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~  214 (354)
                      +...|++++|.+.|++...     .....+..+...+...|++++|.+.+++..  .. .+.+...+..+...+...|++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL--QI-DPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CcCChHHHHHHHHHHHHcCCH
Confidence            9999999999999988754     123456677888899999999999999886  32 222355677788888889999


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ++|...++...+..                     +.+...+..+...+...|+.++|..+++.+..
T Consensus       186 ~~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQTY---------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999888777652                     34556666778888899999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.18  E-value=5.8e-09  Score=95.77  Aligned_cols=302  Identities=12%  Similarity=0.087  Sum_probs=165.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCccc--HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV--CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      +|-.+-++|-..|++++|...|.+..+.  .|+.++  +.-|.+.+...|+++.+...|+...+.. +-+..+...|...
T Consensus       309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence            3555556666666666666666555543  333332  3345566666666666666666666553 4445555555555


Q ss_pred             HHhcC----ChhHHHHHHHhh----ccccchhhHHHHHHHhcCc------hhHHHHHhc-cCCCCChhhhHHHHHHHHhC
Q 038758          110 FIKCG----RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRY------LKVSHCKFS-KIKQKDLVSWNAMLAGYALG  174 (354)
Q Consensus       110 ~~~~g----~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~------~~~a~~~~~-~~~~~~~~~~~~li~~~~~~  174 (354)
                      |+..+    ..+.|..++.+.    +.+...|-.+...|-...-      +..|..++. .+.++.+...|.+.......
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~  465 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL  465 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence            55553    333333333333    2233333333333332222      122222221 12234555566666666677


Q ss_pred             CChhHHHHHHHHHHhhhc---CCCCCcc-------hHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------
Q 038758          175 GFREEVTNLLDEMEMIQT---DMQPNTI-------SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------  233 (354)
Q Consensus       175 ~~~~~a~~~~~~m~~~~~---~~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------  233 (354)
                      |.+++|...|....  ..   ...++..       -|| +-...-..++.+.|..+|..+.+..+.--.           
T Consensus       466 g~~~~A~~~f~~A~--~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  466 GNIEKALEHFKSAL--GKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD  542 (1018)
T ss_pred             cChHHHHHHHHHHh--hhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence            77777777776665  22   1122221       111 112222334444455554444433221111           


Q ss_pred             --------------------------------------------------------------------------------
Q 038758          234 --------------------------------------------------------------------------------  233 (354)
Q Consensus       234 --------------------------------------------------------------------------------  233 (354)
                                                                                                      
T Consensus       543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e  622 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE  622 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence                                                                                            


Q ss_pred             -ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc--
Q 038758          234 -ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--  307 (354)
Q Consensus       234 -~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~--  307 (354)
                       ..+..+.|+.+|.++.   +.|...-|-+-..++..|++.+|..+|.+..+... -+..+|..+-.+|...|.+..|  
T Consensus       623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIq  701 (1018)
T KOG2002|consen  623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHH
Confidence             3345666777777554   34566667777777888888888888888877643 2334556666677777766665  


Q ss_pred             ----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       308 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                -+-+..+...|.+++.++|.+.+|.+.+.....
T Consensus       702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                      233667778888888888888888887766554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=8.6e-10  Score=97.21  Aligned_cols=240  Identities=9%  Similarity=0.030  Sum_probs=162.4

Q ss_pred             ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-------ccccchhhHHHHHHHhcCchh-HHHH
Q 038758           80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLK-VSHC  151 (354)
Q Consensus        80 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~-~a~~  151 (354)
                      +.++|...|+.+.+. +.-+..+...+..+|...+++++|+++|+.+       -.+...|++.+.-+-+.=... -|..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            567888999884443 3444567788999999999999999999999       346778888776655443322 2333


Q ss_pred             HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758          152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       152 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  230 (354)
                      +.+.. ...+.+|.++-++|.-+++.+.|++.|+...    -+.| ..++|+.+-.-+....+++.|...|+..+.....
T Consensus       413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi----Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI----QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh----ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            33333 3467899999999999999999999999886    3556 5788998888889999999999999887754432


Q ss_pred             ccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758          231 LST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA  297 (354)
Q Consensus       231 ~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  297 (354)
                      ...          +.++++.|.-.|++..   +.+.+....+...+.+.|+.++|++++++.....  |.          
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~k----------  555 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PK----------  555 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CC----------
Confidence            211          5555555555555443   2233334444444455555555555555554321  11          


Q ss_pred             hhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhh
Q 038758          298 CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMI  350 (354)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li  350 (354)
                                   |+-.----+..+...+++++|.+.++++++  |+..+-..++
T Consensus       556 -------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ll  597 (638)
T KOG1126|consen  556 -------------NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALL  597 (638)
T ss_pred             -------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHH
Confidence                         222233456667788999999999999998  7765544443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.1e-08  Score=86.63  Aligned_cols=277  Identities=10%  Similarity=0.077  Sum_probs=179.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCCceehhhHHHHHHhcCC
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~  115 (354)
                      .++-...+.+++.+=.+...+.|.+-+...-+....+.....|+++|+.+|+++.+...  .-|..+|..++-.--....
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            34445566777777777777777554444333344445577788999999998887731  1245566655533332222


Q ss_pred             hh-HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          116 ME-ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       116 ~~-~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      .. -|..++.-=+-...|.-++.+-|+-.++.++|...|++..+.   ....|+.|..-|....+...|.+-|+...   
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---  391 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---  391 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence            21 122222222556667777778888888888888888877653   34457777777888888888888888775   


Q ss_pred             cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758          192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD  271 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  271 (354)
                      .-.+-|-..|-.+-++|.-.+..--|.-.|++..+..                     +.|...|.+|-..|.+.++.++
T Consensus       392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---------------------PnDsRlw~aLG~CY~kl~~~~e  450 (559)
T KOG1155|consen  392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---------------------PNDSRLWVALGECYEKLNRLEE  450 (559)
T ss_pred             hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---------------------CCchHHHHHHHHHHHHhccHHH
Confidence            1223355667777777777777666666666665553                     3477788888888888888888


Q ss_pred             HHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------------ccc-chhHHHHHHHHHHhcCChhHHHHH
Q 038758          272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------------LGT-GSFVWNALIDMYGRCGAIQKSRKI  334 (354)
Q Consensus       272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------------~~~-~~~~~~~li~~~~~~g~~~~A~~~  334 (354)
                      |++.|+.....| ..+...+..|-+.+-+.++.+++                ..| ....--.|..-+.+.+++++|...
T Consensus       451 AiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y  529 (559)
T KOG1155|consen  451 AIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY  529 (559)
T ss_pred             HHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            888888877655 33556777777777777776665                222 223333466777788888887765


Q ss_pred             hhcCC
Q 038758          335 FVLMP  339 (354)
Q Consensus       335 ~~~m~  339 (354)
                      .....
T Consensus       530 a~~~~  534 (559)
T KOG1155|consen  530 ATLVL  534 (559)
T ss_pred             HHHHh
Confidence            44443

>TIGR00540 hemY_coli hemY protein

Probab=99.13  E-value=1.1e-08  Score=90.77  Aligned_cols=250  Identities=9%  Similarity=0.001  Sum_probs=139.7

Q ss_pred             ccCChhhHHHHHHHHHHhccCCCceeh-hhHHHHHHhcCChhHHHHHHHhh---ccccc--hhhHHHHHHHhcCchhHHH
Q 038758           77 ELKDYRVGKDVYDYMISIKFEGNACVK-RPLLDLFIKCGRMEITSGLFEEM---DQDFL--VNNSLIDFYAKCRYLKVSH  150 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~---~~~~~--~~~~li~~~~~~~~~~~a~  150 (354)
                      ..|+++.|.+.+....+.  .|+...+ -....+..+.|+.+.|.+.+.+.   .|+..  ..-.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            556777777777655443  3433222 23345556667777777777665   23332  2222456666677777777


Q ss_pred             HHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh---hhhcCccccchhhhHh
Q 038758          151 CKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC---AQVKGVKLGKAIHGYV  224 (354)
Q Consensus       151 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~  224 (354)
                      ..++.+.+  | +......+...+.+.|++++|.+.+....  +.++.+.......-..+.   ...+..+.+...+..+
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77776654  3 44566677777777888888888877776  554432222211111221   2233333333333333


Q ss_pred             hhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH-HHHHHhh--cc
Q 038758          225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV-SVLPACL--KL  301 (354)
Q Consensus       225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~--~~  301 (354)
                      .+......                 +.+...+..+...+...|+.++|.+++++..+.  .||..... .++..+.  ..
T Consensus       252 ~~~~p~~~-----------------~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       252 WKNQPRHR-----------------RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             HHHCCHHH-----------------hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence            33322000                 235566667777777777777777777777654  34433210 1222222  22


Q ss_pred             CcccCc---------ccc-ch--hHHHHHHHHHHhcCChhHHHHHhh--cCC--CCCcccHHHh
Q 038758          302 AALPQG---------LGT-GS--FVWNALIDMYGRCGAIQKSRKIFV--LMP--HKNLVSWNVM  349 (354)
Q Consensus       302 ~~~~~~---------~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~--~m~--~~~~~~~~~l  349 (354)
                      ++.+..         ..| |+  ....++...+.+.|++++|.+.|+  ...  .||...+..+
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence            222221         233 33  557789999999999999999999  353  3887766554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=3.2e-09  Score=89.79  Aligned_cols=309  Identities=11%  Similarity=0.076  Sum_probs=163.8

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCccc----HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFV----CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      +.+.+++.+|++.++-....-...+..+    .+.+--.+.+.|+++.|..-|+...+.  .|+..+--.|+-++..-|+
T Consensus       247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d  324 (840)
T KOG2003|consen  247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD  324 (840)
T ss_pred             eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence            3444567777777766555422222222    223333466888888888888888765  5776666667777777888


Q ss_pred             hhHHHHHHHhh-------------ccccchhhHHHHHHHhcCc--------hhHHHHH-------hccCCCCCh------
Q 038758          116 MEITSGLFEEM-------------DQDFLVNNSLIDFYAKCRY--------LKVSHCK-------FSKIKQKDL------  161 (354)
Q Consensus       116 ~~~a~~~~~~~-------------~~~~~~~~~li~~~~~~~~--------~~~a~~~-------~~~~~~~~~------  161 (354)
                      -++..+.|.+|             ++....-..|+.--.+...        -..|++.       ..-...||-      
T Consensus       325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw  404 (840)
T KOG2003|consen  325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW  404 (840)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence            88888888888             1111111122221111111        1111111       111111111      


Q ss_pred             -------hhhHH--------HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHH-HHHHhh----------------
Q 038758          162 -------VSWNA--------MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG-VLAACA----------------  209 (354)
Q Consensus       162 -------~~~~~--------li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~-ll~~~~----------------  209 (354)
                             ..+.-        -...+.+.|+++.|.++++-..  +..-+.-+..-+. ..--|.                
T Consensus       405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a  482 (840)
T KOG2003|consen  405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA  482 (840)
T ss_pred             HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence                   00111        1224677888888888877775  3222211111111 111111                


Q ss_pred             -------------------hhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHH
Q 038758          210 -------------------QVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWN  257 (354)
Q Consensus       210 -------------------~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~  257 (354)
                                         ..|++++|...+++.+........          ..|++++|+..|-++.   ..+....-
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~  562 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV  562 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence                               124455555555444433221111          5566666666665543   23444444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHhcCC
Q 038758          258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~  327 (354)
                      .+.+.|-...+...|++++-+... -++-|+....-|-..|-+.|+-.++          ++.++.+-..|...|....-
T Consensus       563 qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf  641 (840)
T KOG2003|consen  563 QIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF  641 (840)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence            455666666777777777765542 2334556677777888888887776          55566666666666666666


Q ss_pred             hhHHHHHhhcCC--CCCcccHHHhhhhc
Q 038758          328 IQKSRKIFVLMP--HKNLVSWNVMISVY  353 (354)
Q Consensus       328 ~~~A~~~~~~m~--~~~~~~~~~li~~~  353 (354)
                      +++|...|++..  +|+..-|..||..|
T Consensus       642 ~ekai~y~ekaaliqp~~~kwqlmiasc  669 (840)
T KOG2003|consen  642 SEKAINYFEKAALIQPNQSKWQLMIASC  669 (840)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            666666666443  36666666666544

>PRK12370 invasion protein regulator; Provisional

Probab=99.09  E-value=7.8e-09  Score=95.24  Aligned_cols=209  Identities=10%  Similarity=-0.000  Sum_probs=132.3

Q ss_pred             CChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHh---------ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           44 GYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACS---------ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      +++++|.+.|++..+.  .|+.. .|..+...+.         ..+++++|...++...+.+ +-+...+..+..++...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence            4567888888888765  34433 3443333322         2344778888888887765 55666777777788888


Q ss_pred             CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CCh-hhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL-VSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      |++++|...|++.    +.+...+..+...+...|++++|...+++..+  |+. ..+..+...+...|++++|...+++
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            8888888888876    33455677777788888888888888887754  332 2233344445667788888888877


Q ss_pred             HHhhhcCCCCCc-chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758          187 MEMIQTDMQPNT-ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR  265 (354)
Q Consensus       187 m~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  265 (354)
                      ..  ... .|+. ..+..+..++...|+.++|...+..+....                     ..+....+.+...|..
T Consensus       432 ~l--~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        432 LR--SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---------------------ITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HH--Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---------------------chhHHHHHHHHHHHhc
Confidence            75  322 3433 334555566667777777777766654332                     1233344555555666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 038758          266 SGQVVDALDLLRDVIV  281 (354)
Q Consensus       266 ~g~~~~a~~~~~~m~~  281 (354)
                      .|  ++|...++.+.+
T Consensus       488 ~g--~~a~~~l~~ll~  501 (553)
T PRK12370        488 NS--ERALPTIREFLE  501 (553)
T ss_pred             cH--HHHHHHHHHHHH
Confidence            66  467776666654

>PRK12370 invasion protein regulator; Provisional

Probab=99.07  E-value=1.8e-08  Score=92.86  Aligned_cols=212  Identities=9%  Similarity=-0.036  Sum_probs=149.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      ..+++++|...+++..+.+ +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|..
T Consensus       316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3456899999999998865 3355567777778889999999999999999875 5567788889999999999999999


Q ss_pred             HHHhh---cccc-chhhHHHHHHHhcCchhHHHHHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758          122 LFEEM---DQDF-LVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD  193 (354)
Q Consensus       122 ~~~~~---~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  193 (354)
                      .+++.   .|+. ..+..++..+...|++++|...+++...   |+ ...+..+..++...|++++|...+..+.  .. 
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~--~~-  470 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS--TQ-  470 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh--hc-
Confidence            99997   3432 2334455567778999999999987642   43 4456777788889999999999998875  22 


Q ss_pred             CCCCcch-HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHH
Q 038758          194 MQPNTIS-LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA  272 (354)
Q Consensus       194 ~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  272 (354)
                       .|+..+ .+.+...+...|+  .+...++.+.+..-.                   .+....+..  ..+.-.|+-+.+
T Consensus       471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~-------------------~~~~~~~~~--~~~~~~g~~~~~  526 (553)
T PRK12370        471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR-------------------IDNNPGLLP--LVLVAHGEAIAE  526 (553)
T ss_pred             -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH-------------------hhcCchHHH--HHHHHHhhhHHH
Confidence             344333 3444445666664  666666665543221                   233333333  334455666666


Q ss_pred             HHHHHHHHHcC
Q 038758          273 LDLLRDVIVAN  283 (354)
Q Consensus       273 ~~~~~~m~~~g  283 (354)
                      ..+ +++.+.|
T Consensus       527 ~~~-~~~~~~~  536 (553)
T PRK12370        527 KMW-NKFKNED  536 (553)
T ss_pred             HHH-HHhhccc
Confidence            655 8887654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=8.6e-09  Score=91.35  Aligned_cols=241  Identities=10%  Similarity=0.046  Sum_probs=163.7

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHh-----c-cCCCcee-hhhHHHHHHhcCChhHHHHHHHhh------------
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISI-----K-FEGNACV-KRPLLDLFIKCGRMEITSGLFEEM------------  126 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~------------  126 (354)
                      .+...|...|...|+++.|..+++...+.     | ..|...+ .+.+...|...+++++|..+|+++            
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555777788888888888888877654     1 1232222 234566777888888888888887            


Q ss_pred             ccccchhhHHHHHHHhcCchhHHHHHhccCCC----------CChh-hhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCC
Q 038758          127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----------KDLV-SWNAMLAGYALGGFREEVTNLLDEMEMI-QTDM  194 (354)
Q Consensus       127 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~  194 (354)
                      +.-..+++.|..+|.+.|++++|...+++..+          |.+. .++.+...+...+++++|..++....+. ..-.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            23345666777788888888877776655432          2332 3666777888899999999998866421 1112


Q ss_pred             CCC----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758          195 QPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV  270 (354)
Q Consensus       195 ~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~  270 (354)
                      .++    ..+++.+-..+...|++++|+.+++.+.+..-.             ....-..-.....+-|-..|.+.++.+
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~-------------~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE-------------LLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh-------------cccCcChhhhHHHHHHHHHHHHhcccc
Confidence            233    357888999999999999999999887764321             000000112345677788889999999


Q ss_pred             HHHHHHHHHHHcC--cCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          271 DALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       271 ~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      +|.++|.+-..-.  +.|+..+                    ...+|..|...|.+.|++++|.++.+...
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~--------------------~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPD--------------------VTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCc--------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999998765321  2233322                    23468899999999999999999988765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.06  E-value=1.5e-07  Score=78.64  Aligned_cols=250  Identities=10%  Similarity=0.043  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|-.-.++--+.|+.+.+-..+.+.-+.--.++....-+..+.....|+++.|..-.+.+.+.+ +-++.+......+|.
T Consensus       120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~  198 (400)
T COG3071         120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYI  198 (400)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence            4555667777889999999999999876335555566677778889999999999999999887 667888999999999


Q ss_pred             hcCChhHHHHHHHhh------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCC
Q 038758          112 KCGRMEITSGLFEEM------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGF  176 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  176 (354)
                      +.|++..+..+...+            .-...+|..++.=....+..+.-...+++.+.   .++..-..++.-+.+.|+
T Consensus       199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~  278 (400)
T COG3071         199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD  278 (400)
T ss_pred             HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence            999999999999999            22344666777777777777777778887774   456666677888889999


Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhc
Q 038758          177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFN  246 (354)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~  246 (354)
                      .++|.++.++..  +++..|+..+    +-.+.+-++...-.+..+.-.+...+.+.          +.+.+.+|...|+
T Consensus       279 ~~~A~~~i~~~L--k~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le  352 (400)
T COG3071         279 HDEAQEIIEDAL--KRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE  352 (400)
T ss_pred             hHHHHHHHHHHH--HhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999998887  7777776221    12344555555555555544444333323          7788888888888


Q ss_pred             ccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          247 QLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       247 ~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      ...  .|+..+|+.+-++|.+.|+..+|.+++++-...-.+|+.
T Consensus       353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            654  789999999999999999999999999987754445543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.03  E-value=3.7e-07  Score=83.61  Aligned_cols=319  Identities=10%  Similarity=0.153  Sum_probs=222.1

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|..|..++++..  |....         .|-+|-..|-..|+.+++...+--.--.. +-|...|..+-....+.|++
T Consensus       156 eeA~~i~~EvIkqd--p~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  156 EEAEEILMEVIKQD--PRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHHHHHHHHhC--ccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence            45556666666543  22221         89999999999999999887764443332 44567799999999999999


Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccc-----hhhHHHHHHHhcCchhHHHHH
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFL-----VNNSLIDFYAKCRYLKVSHCK  152 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~a~~~  152 (354)
                      ++|.-+|.+..+.. +++...+-.-+..|-+.|+...|.+-|.++    +|...     .--..++.+...++-+.|.+.
T Consensus       224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999886 777666677788999999999999999998    21111     122356677777888888888


Q ss_pred             hccCCC-----CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh---------------------------cCCCCCcch
Q 038758          153 FSKIKQ-----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ---------------------------TDMQPNTIS  200 (354)
Q Consensus       153 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~~~p~~~t  200 (354)
                      ++....     -+...+++++..|.+...++.+......+.  .                           .++.++...
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence            877654     345568888999999999999999888886  4                           122222222


Q ss_pred             HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccCC----CCcchHHHHHHHH
Q 038758          201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLST----RDVVVWNSIISAF  263 (354)
Q Consensus       201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~  263 (354)
                      + -+.-++...+..+....+...+.+....+..             ..|++.+|+.+|..+..    .+...|--+-.+|
T Consensus       381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence            1 1222344555566666666666666544333             88899999999988762    2566888889999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc-------------------cccchhHHHHHHHHHH
Q 038758          264 VRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG-------------------LGTGSFVWNALIDMYG  323 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~  323 (354)
                      ...|..++|.+.|+.....  .|+. ..-.+|-..+-+.|+.+++                   ..|+..+.....+.+.
T Consensus       460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~  537 (895)
T KOG2076|consen  460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF  537 (895)
T ss_pred             HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence            9999999999999999854  4543 3344555566667766655                   4444555556667777


Q ss_pred             hcCChhHHHHHhhcC
Q 038758          324 RCGAIQKSRKIFVLM  338 (354)
Q Consensus       324 ~~g~~~~A~~~~~~m  338 (354)
                      ..|+.++=..+-.+|
T Consensus       538 ~~gk~E~fi~t~~~L  552 (895)
T KOG2076|consen  538 QVGKREEFINTASTL  552 (895)
T ss_pred             HhhhHHHHHHHHHHH
Confidence            788777644444333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.02  E-value=5.5e-07  Score=79.89  Aligned_cols=317  Identities=9%  Similarity=0.000  Sum_probs=229.9

Q ss_pred             cchhhhhhHhhhhh-----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH
Q 038758           18 LCAFLGSQLLEVFC-----------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD   86 (354)
Q Consensus        18 ~~~~~~~~li~~~~-----------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~   86 (354)
                      -++.|.-++|+...           ||+.--..|.+.+.++-|..+|....+-- +-+...|......--..|..+....
T Consensus       493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A  571 (913)
T KOG0495|consen  493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA  571 (913)
T ss_pred             CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence            34555556665554           99999999999999999999999988753 3455567777777677888999999


Q ss_pred             HHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC
Q 038758           87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD  160 (354)
Q Consensus        87 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~  160 (354)
                      +|+.....- +.....|-....-+-..||+..|..++.+.    +.+...|-+-++.......++.|..+|.+...  |+
T Consensus       572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT  650 (913)
T KOG0495|consen  572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT  650 (913)
T ss_pred             HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence            999888752 444555666667777889999999988887    55677888888999999999999999988764  56


Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------  233 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------  233 (354)
                      ...|.--+..---.+..++|.+++++..   ..++--...|..+-+.+-+.++.+.|...|..-.+.......       
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~l---k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEAL---KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHH---HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            6666555555555688899999998875   233333556777777788888888888887665554433333       


Q ss_pred             ---ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758          234 ---ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       234 ---~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~  307 (354)
                         +.|.+..|..++++..   +.|...|-..|..=.+.|+.+.|..+..+..+. ++-+...|.--|....+.+.-...
T Consensus       728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks  806 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS  806 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence               7778888999998876   447788999999999999999999988777643 222333444444444433332221


Q ss_pred             ------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       308 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                            +..|+.+.-.+...|....++++|.+.|++..+
T Consensus       807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  555666677777777777777777777776665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.01  E-value=1.5e-08  Score=89.81  Aligned_cols=234  Identities=14%  Similarity=0.117  Sum_probs=171.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhc---cCC---
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----G-VRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIK---FEG---   98 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~---   98 (354)
                      +...|-..|...|+++.|..++++..+.     | ..|...+ .+.+-..|...+++++|..+|+.+...-   .-+   
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            6666999999999999999999998664     2 1233333 3346667889999999999999998541   112   


Q ss_pred             -CceehhhHHHHHHhcCChhHHHHHHHhh-----------ccc-cchhhHHHHHHHhcCchhHHHHHhccCCC-------
Q 038758           99 -NACVKRPLLDLFIKCGRMEITSGLFEEM-----------DQD-FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------  158 (354)
Q Consensus        99 -~~~~~~~li~~~~~~g~~~~a~~~~~~~-----------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------  158 (354)
                       -..+++.|..+|.+.|++++|...+++.           .+. ...++.+...++..+.+++|..+++...+       
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence             2346777778899999999999998886           222 23446677788899999999988875532       


Q ss_pred             CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhh----cCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          159 KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ----TDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       159 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      ++    ..+++.|-..|...|++++|.+++++.....    .+..+. ...++.+-..|.+.+....+.++|........
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            22    2469999999999999999999999885211    112222 45678888889999999999888865443221


Q ss_pred             ccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          230 HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                                    .+..- .| ...+|..|...|...|++++|+++.+...
T Consensus       441 --------------~~g~~-~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 --------------LCGPD-HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             --------------HhCCC-CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                          00000 22 34689999999999999999999988775

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.6e-07  Score=78.62  Aligned_cols=265  Identities=5%  Similarity=0.018  Sum_probs=196.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      .-.+.++++|..+|++..+.++  --|..+|+.++-.-....++    .++.+-.-.--+-.+.|...+.+-|+-.++.+
T Consensus       272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE  347 (559)
T KOG1155|consen  272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHE  347 (559)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence            4456899999999999998742  13667788877544332222    22222221112556778888999999999999


Q ss_pred             HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      +|...|++.    +.....|+.+.+-|....+...|.+-++...+   .|-..|-.|..+|.-.+.+.-|+-.|++..  
T Consensus       348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~--  425 (559)
T KOG1155|consen  348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL--  425 (559)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--
Confidence            999999987    55678899999999999999999999988765   467788899999999999999999999885  


Q ss_pred             hcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          191 QTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       191 ~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                        .++| |...+.++-++|.+.++.++|.+.|......|                     ..+...+..|...|-+.++.
T Consensus       426 --~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---------------------dte~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  426 --ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---------------------DTEGSALVRLAKLYEELKDL  482 (559)
T ss_pred             --hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---------------------ccchHHHHHHHHHHHHHHhH
Confidence              3445 57889999999999999999999998888776                     34668899999999999999


Q ss_pred             HHHHHHHHHHHHc----CcCCC--HhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          270 VDALDLLRDVIVA----NVKPN--TVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       270 ~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .+|-..|++-.+.    |..-+  .....-|..-+-+.++++++     ..|.+..  +.-.-..++|..++.++++
T Consensus       483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A-----s~Ya~~~--~~~~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA-----SYYATLV--LKGETECEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH-----HHHHHHH--hcCCchHHHHHHHHHHHHH
Confidence            9999998887652    33222  12222344455566665543     1232322  2225567788888887765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=4.8e-08  Score=82.81  Aligned_cols=262  Identities=12%  Similarity=0.105  Sum_probs=165.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHH--HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK--VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -+.++|+++.|.++++-+.+.+-+.-...-+.  .+..+...+++..|.++-+..+... .-+....+.--..-...|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            47789999999999999887653333322232  2333333457778877777665433 33333333333444567999


Q ss_pred             hHHHHHHHhhcc-ccchhhHHH---HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758          117 EITSGLFEEMDQ-DFLVNNSLI---DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEM  189 (354)
Q Consensus       117 ~~a~~~~~~~~~-~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  189 (354)
                      ++|.+.+.+.-. +...-.+|.   -.+-..|++++|+..|-++..   .+....-.+.+.|-...++..|.+++.+.  
T Consensus       507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~--  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA--  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--
Confidence            999999998733 333333333   356778999999999977653   56777778888898899999999999766  


Q ss_pred             hhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       190 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                       ..-++-|....+.+...|-+.|+-.+|.+.+-.-.+.-                     +-|+.+...|-..|....-+
T Consensus       585 -~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf---------------------p~nie~iewl~ayyidtqf~  642 (840)
T KOG2003|consen  585 -NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF---------------------PCNIETIEWLAAYYIDTQFS  642 (840)
T ss_pred             -cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---------------------CcchHHHHHHHHHHHhhHHH
Confidence             33445557778888888999999888887764433221                     23444444455555555555


Q ss_pred             HHHHHHHHHHHHcCcCCCHhhHHHHHHHhh-ccCcccCc----------cccchhHHHHHHHHHHhcCC
Q 038758          270 VDALDLLRDVIVANVKPNTVTIVSVLPACL-KLAALPQG----------LGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       270 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~~----------~~~~~~~~~~li~~~~~~g~  327 (354)
                      ++++..|++..  =++|+..-|..++.+|. +.|++..+          ++-|......|++.+...|-
T Consensus       643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            66666665543  23555555554444332 23333333          34455556777777776664

>PF12854 PPR_1: PPR repeat

Probab=98.93  E-value=1.4e-09  Score=58.63  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=29.1

Q ss_pred             cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       308 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      +.||..+|++||++||+.|++++|.++|++|+
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            56777779999999999999999999999995

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.91  E-value=1.6e-07  Score=79.42  Aligned_cols=229  Identities=7%  Similarity=-0.033  Sum_probs=154.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCC-CcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           40 YNVLGYYEEIVNLFYLMIDKG-VRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      ....+..+.++.-+.++.... ..|+  ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence            334466677888888887643 2222  3447777778889999999999999998875 55678999999999999999


Q ss_pred             hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      ++|.+.|++.    +.+...|..+...+...|++++|.+.|++..+  |+..............+++++|.+.|.+..  
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~--  192 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY--  192 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH--
Confidence            9999999988    33466778888889999999999999988764  433222222333445678999999997653  


Q ss_pred             hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758          191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV  270 (354)
Q Consensus       191 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~  270 (354)
                      . ...|+...+.   ......|+...+ ..+..+.+....          +.++    .+.....|..+...+.+.|+.+
T Consensus       193 ~-~~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~----------~~~l----~~~~~ea~~~Lg~~~~~~g~~~  253 (296)
T PRK11189        193 E-KLDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATD----------NTEL----AERLCETYFYLAKYYLSLGDLD  253 (296)
T ss_pred             h-hCCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCC----------cHHH----HHHHHHHHHHHHHHHHHCCCHH
Confidence            2 2233332221   122234554443 233333321100          0000    0123457888999999999999


Q ss_pred             HHHHHHHHHHHcCcCCCHhhH
Q 038758          271 DALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       271 ~a~~~~~~m~~~g~~p~~~t~  291 (354)
                      +|+..|++..+.+ +||..-+
T Consensus       254 ~A~~~~~~Al~~~-~~~~~e~  273 (296)
T PRK11189        254 EAAALFKLALANN-VYNFVEH  273 (296)
T ss_pred             HHHHHHHHHHHhC-CchHHHH
Confidence            9999999998664 3455443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.88  E-value=8.5e-07  Score=79.72  Aligned_cols=259  Identities=13%  Similarity=0.068  Sum_probs=143.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc----
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC----  113 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----  113 (354)
                      ..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence            3456788899998888774433 33333445566677788889999999999888876 55665666666666333    


Q ss_pred             -CChhHHHHHHHhh------------------------------------ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758          114 -GRMEITSGLFEEM------------------------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus       114 -g~~~~a~~~~~~~------------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                       .+.+...++++++                                    +.-+.+|+.|-..|......+-..+++...
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~  169 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY  169 (517)
T ss_pred             cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence             2566677777777                                    111223333333333222222222222221


Q ss_pred             C------------------CCCh--hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCcc
Q 038758          157 K------------------QKDL--VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVK  215 (354)
Q Consensus       157 ~------------------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~  215 (354)
                      .                  .|+.  .++..+...|-..|++++|++++++..  .  ..|+ ...|..-.+.+-..|+++
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI--~--htPt~~ely~~KarilKh~G~~~  245 (517)
T PF12569_consen  170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI--E--HTPTLVELYMTKARILKHAGDLK  245 (517)
T ss_pred             HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--h--cCCCcHHHHHHHHHHHHHCCCHH
Confidence            1                  0111  122333444555555555555555544  1  1233 233444444445555555


Q ss_pred             ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758          216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL  295 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  295 (354)
                      +|....+...+..                     ..|-..=+-....+.+.|++++|.+++....+.+..|-...  .-+
T Consensus       246 ~Aa~~~~~Ar~LD---------------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L--~~m  302 (517)
T PF12569_consen  246 EAAEAMDEARELD---------------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL--NDM  302 (517)
T ss_pred             HHHHHHHHHHhCC---------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH--HHH
Confidence            5555544444433                     23455555667778888999999988888876665332211  111


Q ss_pred             HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      ++.              .......++|.+.|++..|.+-|..+.
T Consensus       303 Qc~--------------Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  303 QCM--------------WFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            111              112445678888998888887666554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=5e-08  Score=79.34  Aligned_cols=227  Identities=12%  Similarity=0.029  Sum_probs=164.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      +.+-+.|.+.|.+.+|...|+...+.  .|-+.||..|-++|.+..+...|..++.+-.+. ++-++....-+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            56777888999999999999988775  677788999999999999999999999887754 244554556677888888


Q ss_pred             CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      ++.++|.++++..    +.++.....+...|.-.++.|-|+..++++.+   .+...|+.+--+|.-.+++|-++.-|+.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            9999999998887    34555666666777777888888888877665   4667788887777778888888777777


Q ss_pred             HHhhhcCCCCCc--chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHH
Q 038758          187 MEMIQTDMQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV  264 (354)
Q Consensus       187 m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~  264 (354)
                      ..  ..--.|+.  ..|-.+-......||+..|.+.|+..+..+                     ..+...+|.|--.-.
T Consensus       384 Al--stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---------------------~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  384 AL--STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---------------------AQHGEALNNLAVLAA  440 (478)
T ss_pred             HH--hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---------------------cchHHHHHhHHHHHh
Confidence            65  33333332  223333344445556666665555555443                     234577888888888


Q ss_pred             hcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          265 RSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       265 ~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      +.|++++|..++....+.  .|+.
T Consensus       441 r~G~i~~Arsll~~A~s~--~P~m  462 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSV--MPDM  462 (478)
T ss_pred             hcCchHHHHHHHHHhhhh--Cccc
Confidence            999999999999988743  4543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=5.5e-07  Score=78.51  Aligned_cols=257  Identities=9%  Similarity=-0.000  Sum_probs=154.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      ..-+...+++.+..++.+...+.. ++....+..=|..+...|+..+-.-+=..|++.- |-.+.+|-++..-|.-.|..
T Consensus       251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~  328 (611)
T KOG1173|consen  251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY  328 (611)
T ss_pred             HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence            344556788888888888888764 5666667777777778888777666666666653 66677888888888888999


Q ss_pred             hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758          117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEM  189 (354)
Q Consensus       117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  189 (354)
                      ++|.+.|.+.    +.=...|-...+.|+-.|..|+|+..+...-+  | ....+--+---|.+.+..+.|.+.|.+.. 
T Consensus       329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-  407 (611)
T KOG1173|consen  329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-  407 (611)
T ss_pred             HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence            9999988886    22244555666666666666666655533221  1 11111122333445555555555555543 


Q ss_pred             hhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------------ccchhHHHHHHhcccC--
Q 038758          190 IQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------------ACGFVICSCSVFNQLS--  249 (354)
Q Consensus       190 ~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~--  249 (354)
                         ++-|+ +..++-+--.....+.+.+|...|+..+..-.....                 +++.+++|+..++...  
T Consensus       408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l  484 (611)
T KOG1173|consen  408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL  484 (611)
T ss_pred             ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence               33333 233333333333444555555555444311000000                 4444444444444332  


Q ss_pred             -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          250 -TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       250 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                       +.|..+|.++--.|...|+++.|.+.|.+..  .+.|+..+-..++..+...
T Consensus       485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence             5577888888888888888888888888776  5678877766666655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=1.6e-06  Score=74.29  Aligned_cols=295  Identities=12%  Similarity=0.144  Sum_probs=163.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      +..=-..|+...|.++|++..+-  .|+...|.+.|..=.+...++.|..+|+..+-  +.|++.+|-.....=.++|.+
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~  223 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV  223 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence            33334457777777777777653  67777788887777777777788888777764  357777777777777777877


Q ss_pred             hHHHHHHHhh-------ccccchhhHHHHHHHhcCchhHHHHHhc----cCCC---------------------------
Q 038758          117 EITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLKVSHCKFS----KIKQ---------------------------  158 (354)
Q Consensus       117 ~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~---------------------------  158 (354)
                      ..+..+|+..       ......+.+....-.++..++.|.-+|+    .+++                           
T Consensus       224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            7777777765       2233344444455555666676666653    2221                           


Q ss_pred             -------------CChh---hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-------chHHHHHHHh---hhhc
Q 038758          159 -------------KDLV---SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-------ISLSGVLAAC---AQVK  212 (354)
Q Consensus       159 -------------~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-------~t~~~ll~~~---~~~~  212 (354)
                                   .|+.   +|--.+..--..|+.+...++|+..   -.+++|-.       +.|--+=-+|   ....
T Consensus       304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA---Ianvpp~~ekr~W~RYIYLWinYalyeEle~e  380 (677)
T KOG1915|consen  304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA---IANVPPASEKRYWRRYIYLWINYALYEELEAE  380 (677)
T ss_pred             hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                         0111   2222233333345555556666555   33444422       1111111111   1234


Q ss_pred             CccccchhhhHhhhhcccccc---------------ccchhHHHHHHhcccC--CCCcchHHHHHHHHHhcCCHHHHHHH
Q 038758          213 GVKLGKAIHGYVLRHHIHLST---------------ACGFVICSCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDL  275 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~  275 (354)
                      |++.++++++..++. ++...               ++.++..|.+++....  .|-.-+|-..|..=.+.++++.+..+
T Consensus       381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL  459 (677)
T KOG1915|consen  381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL  459 (677)
T ss_pred             hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence            555555555555441 11111               4455555555555443  45555555566655666666666666


Q ss_pred             HHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       276 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      |++..+-+ +-|-.+|......-...|+.+.+            ..-....|.+.|+--...|.+++|..+++++.+
T Consensus       460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            66666543 22334444444444444555443            222334566666666667777777777776665

>PF12854 PPR_1: PPR repeat

Probab=98.83  E-value=3e-09  Score=57.37  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             ccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666655

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=7.5e-06  Score=70.27  Aligned_cols=306  Identities=12%  Similarity=0.128  Sum_probs=220.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      |---+..=.++.....|..++++....=++.|.. |---+..=-..|++..|.++|+.-.+-  .|+...|.+.|..=.+
T Consensus       110 WlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR  186 (677)
T KOG1915|consen  110 WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR  186 (677)
T ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence            4444566678899999999999998764444444 444444456789999999999988764  8999999999999999


Q ss_pred             cCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------------------------------
Q 038758          113 CGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------------------------------  158 (354)
Q Consensus       113 ~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------------  158 (354)
                      ...++.|..++++.   .|++..|-.....--++|++..|.++|+...+                               
T Consensus       187 ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i  266 (677)
T KOG1915|consen  187 YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI  266 (677)
T ss_pred             hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   78888888888888888888888887765531                               


Q ss_pred             ----CChhhh---HHHHHHHH----hCCChhHHHHHH---HHHHh--hhcCCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758          159 ----KDLVSW---NAMLAGYA----LGGFREEVTNLL---DEMEM--IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       159 ----~~~~~~---~~li~~~~----~~~~~~~a~~~~---~~m~~--~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                          .|...-   .-|-..|.    +-|+.....+..   +.++-  ....-+.|-.++--.++.-...|+.+...++++
T Consensus       267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE  346 (677)
T KOG1915|consen  267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE  346 (677)
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence                011110   12223322    335554444332   22220  011223344556666666777899999999999


Q ss_pred             Hhhhhcccccc--------------------ccchhHHHHHHhcccC---CCCcchHHHHHHHHH----hcCCHHHHHHH
Q 038758          223 YVLRHHIHLST--------------------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFV----RSGQVVDALDL  275 (354)
Q Consensus       223 ~~~~~~~~~~~--------------------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~----~~g~~~~a~~~  275 (354)
                      .....-.+...                    ...+.+.+.++|+...   +...+||.-+--.|+    ++.+...|.++
T Consensus       347 rAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki  426 (677)
T KOG1915|consen  347 RAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI  426 (677)
T ss_pred             HHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            88876554333                    5667777777776543   456677766554444    56789999999


Q ss_pred             HHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCc
Q 038758          276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNL  343 (354)
Q Consensus       276 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~  343 (354)
                      +....  |..|...+|-..|..-.+.++++..         +.| |..+|.-....-...|+.+.|..+|+-... |-.
T Consensus       427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l  503 (677)
T KOG1915|consen  427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL  503 (677)
T ss_pred             HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence            98887  8899999999999999999998887         555 678888888888899999999999997765 543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.78  E-value=1e-06  Score=68.39  Aligned_cols=191  Identities=11%  Similarity=-0.004  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +.-.|--.|...|++..|..-+++..+++ +-+..+|..+...|.+.|..+.|.+-|+...+.. +-+..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            56667778999999999999999999875 4455678888888999999999999999988775 667788999999999


Q ss_pred             hcCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHH
Q 038758          112 KCGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      ..|++++|...|++.      .....+|..+.-+..+.|+.+.|+..|++-.+  | ...+.-.+.....+.|++-.|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999988      33456778888888899999999999988765  2 34566777888889999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      .++...  ..+ .++..+.-.-|+.--+.|+.+.+...-.++.+.
T Consensus       195 ~~~~~~--~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         195 YLERYQ--QRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHH--hcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            998885  444 488888888888778888877776655554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.75  E-value=1.8e-06  Score=67.06  Aligned_cols=197  Identities=9%  Similarity=-0.030  Sum_probs=146.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~  143 (354)
                      ...|.-.|...|+...|.+-++..++.. +-+..+|..+...|.+.|+.+.|.+.|++.    +.+..+.|.....+|..
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            4556668889999999999999999875 556778999999999999999999999987    66788889999999999


Q ss_pred             CchhHHHHHhccCCC-C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758          144 RYLKVSHCKFSKIKQ-K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK  218 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~  218 (354)
                      |.+++|...|++... |    -..+|..+.-+..+.|+.+.|.+.|+...++...   ...+.-.+.....+.|+.-.|.
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---CChHHHHHHHHHHhcccchHHH
Confidence            999999999987764 3    3457888888888899999999999887622222   2345556666677778888887


Q ss_pred             hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                      ..++.....+                     .++....-..|..--..|+.+.+-+.=.++.+.  -|...-|
T Consensus       194 ~~~~~~~~~~---------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~  243 (250)
T COG3063         194 LYLERYQQRG---------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY  243 (250)
T ss_pred             HHHHHHHhcc---------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence            7777766655                     344444444556566677777776665555533  4554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.9e-06  Score=74.15  Aligned_cols=237  Identities=11%  Similarity=-0.003  Sum_probs=171.1

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH----HHhhccccchhhHHHHHH
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL----FEEMDQDFLVNNSLIDFY  140 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~li~~~  140 (354)
                      ......-.+.|...+++++..++.+...+.. ++....+..-|.++...|+..+...+    .+..+....+|-++.--|
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence            3334444556678889999999999999875 88888888888899999887665444    444478899999999999


Q ss_pred             HhcCchhHHHHHhccCCCCC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC-CCCcchHHHHHHHhhhhcCccc
Q 038758          141 AKCRYLKVSHCKFSKIKQKD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~t~~~ll~~~~~~~~~~~  216 (354)
                      .-.|+..+|.+.|.+...-|   ...|-.....|.-.|..|+|...|...-+.-.|. .|.    --+---|.+.++.+.
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHH
Confidence            99999999999998876543   3468888889999999999999988775212232 222    122223778899999


Q ss_pred             cchhhhHhhhhcccccc----------ccchhHHHHHHhcccCC----------CCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758          217 GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLST----------RDVVVWNSIISAFVRSGQVVDALDLL  276 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~  276 (354)
                      |.++|.+........+.          ..+.+.+|...|.....          ....+++.|-++|.+.+.+++|+..+
T Consensus       399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999887766544333          67778888888776541          13456788888899999999999999


Q ss_pred             HHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758          277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       277 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~  307 (354)
                      ++..... +-|..++.++--.+...|+++.|
T Consensus       479 q~aL~l~-~k~~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  479 QKALLLS-PKDASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             HHHHHcC-CCchhHHHHHHHHHHHhcChHHH
Confidence            8887542 33555544444444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.74  E-value=1.1e-06  Score=74.40  Aligned_cols=193  Identities=9%  Similarity=-0.012  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|++..+.. +.+...|+.+...+...|+++.|.+.|+...+.. +-+..++..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            46667777889999999999999998864 3356779999999999999999999999998764 445678888999999


Q ss_pred             hcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-CChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      ..|++++|.+.|++.   .|+..........+...++.++|...|++... .+...|.. .......|+.+.+ +.++.+
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~  221 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERL  221 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHH
Confidence            999999999999987   33332222222234456889999999965432 22233332 2233345666554 455555


Q ss_pred             Hhh-hc--CCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          188 EMI-QT--DMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       188 ~~~-~~--~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      ... ..  .+.| ....|..+-..+.+.|+.++|...|+...+..
T Consensus       222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            310 01  1111 23568888888999999999999998888765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=1.5e-06  Score=74.57  Aligned_cols=297  Identities=12%  Similarity=0.060  Sum_probs=191.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~  109 (354)
                      .+-+.-+-|.++|.+++|++.+.+..+.  .|| ...|...-..|...|+++++.+--...++.  .|+ +..+.--.++
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA  192 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence            5566677788999999999999999985  688 566777777788889998877666555543  333 2233334445


Q ss_pred             HHhcCChhHHHH----------------------HHHhh-----------------------------------------
Q 038758          110 FIKCGRMEITSG----------------------LFEEM-----------------------------------------  126 (354)
Q Consensus       110 ~~~~g~~~~a~~----------------------~~~~~-----------------------------------------  126 (354)
                      +-..|++++|+.                      ++...                                         
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            555555555432                      22111                                         


Q ss_pred             ------------------------------------ccccchhh-------HHH-------HHHHhcCchhHHHHHhccC
Q 038758          127 ------------------------------------DQDFLVNN-------SLI-------DFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus       127 ------------------------------------~~~~~~~~-------~li-------~~~~~~~~~~~a~~~~~~~  156 (354)
                                                          ......++       .+.       ..+.-.|+.-+|..-|+..
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence                                                00000000       001       1122334444455445444


Q ss_pred             CC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccc
Q 038758          157 KQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS  232 (354)
Q Consensus       157 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  232 (354)
                      ..  | +...|--+..+|....+.++..+.|++..    .+.| |+.+|..--+...-.+++++|..=|+..........
T Consensus       353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~----~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE----DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH----hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            32  2 22236667778889999999999999886    2333 456677777777777788888877777666554433


Q ss_pred             c----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-------HhhHH
Q 038758          233 T----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-------TVTIV  292 (354)
Q Consensus       233 ~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~t~~  292 (354)
                      .          +.++++++...|+..+   +.-...||..-..+..++++++|.+-|+...+.  .|+       ..++.
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV  506 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence            2          7788899999998876   335678999999999999999999999998754  333       22221


Q ss_pred             H--HHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          293 S--VLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       293 ~--li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      .  ++.. -=.+++..|         +.| ....|.+|...-.+.|++++|.++|++-.
T Consensus       507 ~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  507 HKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1  1111 111444443         333 35689999999999999999999998653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=4e-07  Score=78.03  Aligned_cols=217  Identities=10%  Similarity=0.005  Sum_probs=142.3

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      -.|+.-.|.+-|+........++.. |.-+-..|....+.++..+.|+...+.+ +-|+.+|..-...+.-.++++.|..
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence            3477777777777777765333332 6666667778888888888888877766 6677777777777777778888888


Q ss_pred             HHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh---
Q 038758          122 LFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ---  191 (354)
Q Consensus       122 ~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---  191 (354)
                      =|++.    +.+...|-.+.-+.-+.+.+++++..|++...  | .+..|+.....+...+++++|.+.|+...+.+   
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence            77776    44555666666666677788888888877764  3 35677777778888888888888887765211   


Q ss_pred             cCCCCCcchHHH-HHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758          192 TDMQPNTISLSG-VLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV  270 (354)
Q Consensus       192 ~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~  270 (354)
                      +++..+..++.. -+-.+--.+++..|..++....+..                     +.....|-+|-..-.++|+.+
T Consensus       496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D---------------------pkce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD---------------------PKCEQAYETLAQFELQRGKID  554 (606)
T ss_pred             ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC---------------------chHHHHHHHHHHHHHHHhhHH
Confidence            111111111110 0001112244444444444444332                     335578899999999999999


Q ss_pred             HHHHHHHHHHH
Q 038758          271 DALDLLRDVIV  281 (354)
Q Consensus       271 ~a~~~~~~m~~  281 (354)
                      +|+++|++-..
T Consensus       555 eAielFEksa~  565 (606)
T KOG0547|consen  555 EAIELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.71  E-value=1.6e-06  Score=80.33  Aligned_cols=245  Identities=12%  Similarity=0.070  Sum_probs=125.0

Q ss_pred             cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh---ccCCCc------eehhhHHHHHHhcCChhHHHHHHHhh---ccc
Q 038758           62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI---KFEGNA------CVKRPLLDLFIKCGRMEITSGLFEEM---DQD  129 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~---~~~  129 (354)
                      .+.....|.+.......|++..|...|...+..   ...++.      .+--.+..++-..++.+.|.+.|..+   .|.
T Consensus       449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            344455555555555555555555555555433   111111      11223344444445555555555555   111


Q ss_pred             -cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758          130 -FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL  205 (354)
Q Consensus       130 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll  205 (354)
                       ...|-.+..+.-..++..+|...+....+   .++..+..+-..+.+..+|..|.+-|+...+ .....+|+++...|-
T Consensus       529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~-~~~~~~D~YsliaLG  607 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK-KTSTKTDAYSLIALG  607 (1018)
T ss_pred             hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh-hhccCCchhHHHHhh
Confidence             11111222222223445555555554442   2333444444455555555555554444432 222224444444444


Q ss_pred             HHhhh------------hcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHH
Q 038758          206 AACAQ------------VKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSII  260 (354)
Q Consensus       206 ~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li  260 (354)
                      +.|.+            .+..++|.++|.++++.....--          ..|++.+|..+|..+.   ..+..+|-.+.
T Consensus       608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla  687 (1018)
T KOG2002|consen  608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA  687 (1018)
T ss_pred             HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence            43321            12345555555555544311100          5556666666665554   23456788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHHHhhccCcccCc
Q 038758          261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       261 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~~  307 (354)
                      +.|+..|++..|+++|+...+. .-.-+......|-+++...|.+.++
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea  735 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA  735 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence            8888888888888888887554 3344556677777888888877665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=3.6e-06  Score=69.54  Aligned_cols=150  Identities=11%  Similarity=0.097  Sum_probs=89.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      .-+...+++..|..+++.-...+-+-...+--.+...+...|++++|...+..+.+.. .|+...+-.|..++.-.|.+.
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence            3455677888888888776644422222223333444557888888888888877644 666777777777777778888


Q ss_pred             HHHHHHHhhccccchhhHHH------------------------------HHHHhcCchhHHHHHhccCCC--CChhhhH
Q 038758          118 ITSGLFEEMDQDFLVNNSLI------------------------------DFYAKCRYLKVSHCKFSKIKQ--KDLVSWN  165 (354)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~li------------------------------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  165 (354)
                      +|..+-...+.+......|.                              +..--+-.+.+|++++.+...  |.-...|
T Consensus       109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN  188 (557)
T KOG3785|consen  109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN  188 (557)
T ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence            88877777633333333333                              333333345566666665553  3333344


Q ss_pred             HHH-HHHHhCCChhHHHHHHHHHH
Q 038758          166 AML-AGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       166 ~li-~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .-+ -+|.+..-++-+.++++-..
T Consensus       189 Vy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  189 VYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHH
Confidence            333 45566777777777776653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.69  E-value=1.6e-07  Score=78.55  Aligned_cols=220  Identities=11%  Similarity=0.106  Sum_probs=131.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CCceehhhHHHHHHh
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNACVKRPLLDLFIK  112 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~  112 (354)
                      -.+.+++...|+++.+   +.+..... .|.......+...+....+-+.+..-++.....+.. .+..........+..
T Consensus        39 ~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~  114 (290)
T PF04733_consen   39 FYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH  114 (290)
T ss_dssp             HHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            3456677777876643   34443333 566665555554444333444444433333222222 222222233355667


Q ss_pred             cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHH----HHhCCChhHHHHHHHHH
Q 038758          113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAG----YALGGFREEVTNLLDEM  187 (354)
Q Consensus       113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~----~~~~~~~~~a~~~~~~m  187 (354)
                      .|++++|.+++.+- .+.......+..|.+.++++.|.+.++.|++- +-.+...+..+    +...+.+.+|..+|+++
T Consensus       115 ~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El  193 (290)
T PF04733_consen  115 EGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL  193 (290)
T ss_dssp             CCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            78888888888775 55566677888888889999999888888762 22222233333    33344688899999888


Q ss_pred             HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758          188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG  267 (354)
Q Consensus       188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  267 (354)
                      .   ....++..+.+.+..+....|++++|+.++.+..+..                     +.|..+.-.++......|
T Consensus       194 ~---~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---------------------~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  194 S---DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---------------------PNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             H---CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------------------CCHHHHHHHHHHHHHHTT
T ss_pred             H---hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------------------cCCHHHHHHHHHHHHHhC
Confidence            4   4566777778888888888888888888877766543                     234556666677777777


Q ss_pred             CH-HHHHHHHHHHHHc
Q 038758          268 QV-VDALDLLRDVIVA  282 (354)
Q Consensus       268 ~~-~~a~~~~~~m~~~  282 (354)
                      +. +.+.+.+.++.+.
T Consensus       250 k~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  250 KPTEAAERYLSQLKQS  265 (290)
T ss_dssp             -TCHHHHHHHHHCHHH
T ss_pred             CChhHHHHHHHHHHHh
Confidence            76 6677788887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=4.7e-06  Score=67.31  Aligned_cols=300  Identities=10%  Similarity=0.045  Sum_probs=197.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh-HHHHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-LLDLFI  111 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~  111 (354)
                      +++.+..+.+..+++.|.+++..-.++. +.+....+.|...|....++..|..+++++-..  .|...-|.. -...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            5667777888999999999999888764 226667888888888999999999999998754  454444432 345677


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHH----HHHhcCchhHHHHHhccCCC-CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLID----FYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      +.+.+..|.++...|.......+..+.    ..-..+++..+..+.++.+. .+..+.+...-...+.|+++.|.+-|+.
T Consensus        90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence            889999999999988544443333322    22356888899999998873 5556655555556788999999999998


Q ss_pred             HHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcccCCCCcchHHHHH----
Q 038758          187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQLSTRDVVVWNSII----  260 (354)
Q Consensus       187 m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~li----  260 (354)
                      ..+ -.|..| ...|+..+ +..+.|+...|.+...++.++|+...+  ..|...+... .+.+..|-...-+.++    
T Consensus       170 Alq-vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  170 ALQ-VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLVLHQSALVEAFN  245 (459)
T ss_pred             HHh-hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHHHHHHHHHHHhh
Confidence            873 456665 45676655 455678899999999999999886544  2222222111 0011111111222333    


Q ss_pred             ---HHHHhcCCHHHHHHHHHHHHH-cCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcC
Q 038758          261 ---SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCG  326 (354)
Q Consensus       261 ---~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g  326 (354)
                         ..+.+.|+.+.|.+-+-+|.- ..-..|++|...+.-.=.. +++..+         ..| ...||..++-.||+..
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe  324 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE  324 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence               334567888888888877742 2234566776554332221 222222         233 4567888888888888


Q ss_pred             ChhHHHHHhhcCCC
Q 038758          327 AIQKSRKIFVLMPH  340 (354)
Q Consensus       327 ~~~~A~~~~~~m~~  340 (354)
                      -++.|-.++-+-..
T Consensus       325 yf~lAADvLAEn~~  338 (459)
T KOG4340|consen  325 YFDLAADVLAENAH  338 (459)
T ss_pred             HHhHHHHHHhhCcc
Confidence            88888888876544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=6.3e-07  Score=73.10  Aligned_cols=213  Identities=9%  Similarity=0.004  Sum_probs=157.5

Q ss_pred             hhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh-HHHHHHHHhCCCh
Q 038758          104 RPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW-NAMLAGYALGGFR  177 (354)
Q Consensus       104 ~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~~  177 (354)
                      +.+..+|.+.|.+.+|++.|+.-   .+.+.+|-.|-+.|.+....+.|+.+|.+..+  |-.+|| .-+...+-..++.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            56788999999999999888876   67788888888999999999999999987765  544444 3455667777889


Q ss_pred             hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH
Q 038758          178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN  257 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  257 (354)
                      ++|.++|+...   +-...+......+...|.-.++++.|...+..+++.|.                     .+...|+
T Consensus       307 ~~a~~lYk~vl---k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---------------------~speLf~  362 (478)
T KOG1129|consen  307 EDALQLYKLVL---KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---------------------QSPELFC  362 (478)
T ss_pred             HHHHHHHHHHH---hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---------------------CChHHHh
Confidence            99999998885   22233455555666667777889999999999999986                     4566788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh--hHHHHHHHhhccCcccCc-------cc--c-chhHHHHHHHHHHhc
Q 038758          258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTV--TIVSVLPACLKLAALPQG-------LG--T-GSFVWNALIDMYGRC  325 (354)
Q Consensus       258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~~-------~~--~-~~~~~~~li~~~~~~  325 (354)
                      .+--+|.-.++++-++--|++....-..|+..  .|-.+-....-.||+..+       +.  + ....++.|.-.-.+.
T Consensus       363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            87777888888888888888877654445432  233333333444555444       22  2 346788888888999


Q ss_pred             CChhHHHHHhhcCCC
Q 038758          326 GAIQKSRKIFVLMPH  340 (354)
Q Consensus       326 g~~~~A~~~~~~m~~  340 (354)
                      |+++.|..+++....
T Consensus       443 G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  443 GDILGARSLLNAAKS  457 (478)
T ss_pred             CchHHHHHHHHHhhh
Confidence            999999999998776

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.60  E-value=2.8e-05  Score=68.03  Aligned_cols=261  Identities=10%  Similarity=-0.028  Sum_probs=147.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhc
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKC  113 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~  113 (354)
                      .+...|++++|.+.+++..+.. +.+...+.. ...+..    .+....+.+.++.  ..+..|+ ......+...+...
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence            4556799999999999987753 222223332 112222    3444455555443  1111222 22334556678889


Q ss_pred             CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C---Ch--hhhHHHHHHHHhCCChhHHHH
Q 038758          114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K---DL--VSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~a~~  182 (354)
                      |++++|.+.+++.    +.+...+..+...+...|++++|...+++...  |   +.  ..|..+...+...|++++|.+
T Consensus       128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA  207 (355)
T ss_pred             CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999987    44566778888899999999999999987664  1   21  234467788889999999999


Q ss_pred             HHHHHHhhhcCC-CCCcchH-H--HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH-
Q 038758          183 LLDEMEMIQTDM-QPNTISL-S--GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN-  257 (354)
Q Consensus       183 ~~~~m~~~~~~~-~p~~~t~-~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  257 (354)
                      ++++..  .... .+..... +  .++.-+...|....+... +.+......                .. ......++ 
T Consensus       208 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~----------------~~-~~~~~~~~~  267 (355)
T cd05804         208 IYDTHI--APSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAW----------------HF-PDHGLAFND  267 (355)
T ss_pred             HHHHHh--ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHh----------------hc-CcccchHHH
Confidence            999875  3221 1111111 1  112222223332222222 111111100                00 11112222 


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758          258 -SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV  336 (354)
Q Consensus       258 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  336 (354)
                       ....++...|+.++|..+++.+......++..-+                ....+...-..--++.+.|+.++|.+.+.
T Consensus       268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~~~l~A~~~~~~g~~~~A~~~L~  331 (355)
T cd05804         268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----------------PARDVGLPLAEALYAFAEGNYATALELLG  331 (355)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----------------hHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence             4566778899999999999998764322110000                00011112223334568888888888887


Q ss_pred             cCC
Q 038758          337 LMP  339 (354)
Q Consensus       337 ~m~  339 (354)
                      +..
T Consensus       332 ~al  334 (355)
T cd05804         332 PVR  334 (355)
T ss_pred             HHH
Confidence            654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.60  E-value=1.1e-07  Score=52.06  Aligned_cols=35  Identities=26%  Similarity=0.720  Sum_probs=33.0

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      .+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.59  E-value=1.1e-07  Score=52.09  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH   65 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~   65 (354)
                      +||++|++|++.|++++|.++|++|.+.|++||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6899999999999999999999999999998874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.58  E-value=1.3e-06  Score=73.04  Aligned_cols=212  Identities=13%  Similarity=0.031  Sum_probs=137.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      +.+.-.|++..++.-.+ ........+...-..+.+++...|+++.   ++.++.+.. .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44455688888886555 3322222334455667788888888764   444444444 666666655555554445555


Q ss_pred             HHHHHHHhh--cc----ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          118 ITSGLFEEM--DQ----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       118 ~a~~~~~~~--~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      .+..-+++.  .+    +....-.....+...|++++|.+++.+.  .+.......+..|.+.++++.|.+.++.|+  +
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~--~  159 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ--Q  159 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--h
Confidence            665555444  11    1112222334567789999999999886  456667778899999999999999999998  4


Q ss_pred             cCCCCCcchHHHHHHHhhh--hc--CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758          192 TDMQPNTISLSGVLAACAQ--VK--GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG  267 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  267 (354)
                      .  . +..+...+..++..  .|  .++.|..+|+++.+..                     .++..+.|.+..++...|
T Consensus       160 ~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~---------------------~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  160 I--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF---------------------GSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             C--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----------------------SHHHHHHHHHHHHHCT
T ss_pred             c--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc---------------------CCCHHHHHHHHHHHHHhC
Confidence            3  2 34556666666543  23  5788888888876542                     457788899999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 038758          268 QVVDALDLLRDVIVA  282 (354)
Q Consensus       268 ~~~~a~~~~~~m~~~  282 (354)
                      ++++|.+++.+..+.
T Consensus       216 ~~~eAe~~L~~al~~  230 (290)
T PF04733_consen  216 HYEEAEELLEEALEK  230 (290)
T ss_dssp             -HHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999997644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.55  E-value=3.4e-06  Score=80.94  Aligned_cols=197  Identities=15%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHh-ccCC---CceehhhHHHHHHhcCChhHHHHHHHhhcc---ccchhhHHHHHH
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISI-KFEG---NACVKRPLLDLFIKCGRMEITSGLFEEMDQ---DFLVNNSLIDFY  140 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~li~~~  140 (354)
                      |-.-|......++.+.|+++.++..+. ++.-   -...|.++++.-...|.-+...++|++...   .-.+|..|...|
T Consensus      1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            444444444555555555555544432 1110   122344444444444444555555555421   122334444555


Q ss_pred             HhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCc
Q 038758          141 AKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGV  214 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~  214 (354)
                      .+...+++|.++++.|.+   .....|...+..+.+..+-+.|..++.+..  +  .-|-   .....-....-.+.|+.
T Consensus      1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL--~--~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL--K--SLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH--h--hcchhhhHHHHHHHHHHHhhcCCc
Confidence            555555555555554443   233344444445555555455555554443  1  1111   11122222223344444


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      +.++.+|+..+...                     +.-...|+.+|+.=.++|+.+.+..+|++....++.|-..
T Consensus      1617 eRGRtlfEgll~ay---------------------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY---------------------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred             hhhHHHHHHHHhhC---------------------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence            44444444444332                     3456789999999999999999999999999998887653

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.51  E-value=2.4e-07  Score=50.25  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=32.3

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      +.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999988

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.47  E-value=0.00022  Score=64.05  Aligned_cols=124  Identities=11%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHH----HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC--CceehhhH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYL----MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG--NACVKRPL  106 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l  106 (354)
                      |-+--..=-.+|+.+.+..++++    +...|+..+...|-.=...|-..|.+-.+..+.......|+.-  ...||..-
T Consensus       443 Witaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d  522 (913)
T KOG0495|consen  443 WITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD  522 (913)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence            33333344456666666666554    2334666666666555555555555555555555555554432  23355555


Q ss_pred             HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758          107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                      ...|.+.+-++-|..+|...    +.+...|......--..|..++...+|++.
T Consensus       523 a~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka  576 (913)
T KOG0495|consen  523 AQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA  576 (913)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            55555555555555555544    233344444444444444444444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=8e-05  Score=65.82  Aligned_cols=313  Identities=10%  Similarity=0.029  Sum_probs=179.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHHHhcC
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLFIKCG  114 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g  114 (354)
                      =++.+...|++++|.+...++...+ +-+...+..=+-+..+.++++.|..+.+   ..+. ..+..-+.--.-+..+.+
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhhHHHHHHHHHcc
Confidence            3566778899999999999988765 3344445555557778888888774443   2221 111111111223334567


Q ss_pred             ChhHHHHHHHhhccccc-hhhHHHHHHHhcCchhHHHHHhccCCC-------------------------------CChh
Q 038758          115 RMEITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHCKFSKIKQ-------------------------------KDLV  162 (354)
Q Consensus       115 ~~~~a~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~  162 (354)
                      ..|+|...++-+.++.. +...-...+-+.|++++|.++|+.+.+                               ....
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~  173 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED  173 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence            88888877775544332 444445566677888888888776621                               0112


Q ss_pred             hhHHHHH---HHHhCCChhHHHHHHHHHHh-----h-h-----cCCCCCcchHH-HHHHHhhhhcCccccchhhhHhhhh
Q 038758          163 SWNAMLA---GYALGGFREEVTNLLDEMEM-----I-Q-----TDMQPNTISLS-GVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       163 ~~~~li~---~~~~~~~~~~a~~~~~~m~~-----~-~-----~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +|..+-+   .+...|++.+|+++++...+     . .     .++.-+..+.. .+.-++-..|+.++|..++..+.+.
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            3433332   34567888888888887710     0 0     01111111111 2222345678888888888887777


Q ss_pred             cccccc--------------------------------------------------------------------------
Q 038758          228 HIHLST--------------------------------------------------------------------------  233 (354)
Q Consensus       228 ~~~~~~--------------------------------------------------------------------------  233 (354)
                      ......                                                                          
T Consensus       254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l  333 (652)
T KOG2376|consen  254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL  333 (652)
T ss_pred             cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence            655543                                                                          


Q ss_pred             -------------------ccchhHHHHHHhcccC--CC--CcchHHHHHHHHHhcCCHHHHHHHHH--------HHHHc
Q 038758          234 -------------------ACGFVICSCSVFNQLS--TR--DVVVWNSIISAFVRSGQVVDALDLLR--------DVIVA  282 (354)
Q Consensus       234 -------------------~~~~~~~a~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~  282 (354)
                                         ......++..++....  .|  ....--.++......|+++.|.+++.        .+.+.
T Consensus       334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence                               0001222222222221  11  12334455666778999999999999        66666


Q ss_pred             CcCCCHhhHHHHHHHhhccCcccCc-------------cccchh----HHHHHHHHHHhcCChhHHHHHhhcCCC---CC
Q 038758          283 NVKPNTVTIVSVLPACLKLAALPQG-------------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPH---KN  342 (354)
Q Consensus       283 g~~p~~~t~~~li~~~~~~~~~~~~-------------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~---~~  342 (354)
                      +..|-.  ...+...+.+.++-+.+             -.+...    ++.-+...-.+.|+-++|..+++++.+   +|
T Consensus       414 ~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d  491 (652)
T KOG2376|consen  414 KHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND  491 (652)
T ss_pred             ccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence            666654  44555556666555444             112222    233334444678999999999999987   56


Q ss_pred             cccHHHhhhhcC
Q 038758          343 LVSWNVMISVYG  354 (354)
Q Consensus       343 ~~~~~~li~~~~  354 (354)
                      ......++.+||
T Consensus       492 ~~~l~~lV~a~~  503 (652)
T KOG2376|consen  492 TDLLVQLVTAYA  503 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            666666666654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=0.00013  Score=68.44  Aligned_cols=282  Identities=12%  Similarity=0.080  Sum_probs=189.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      -+.-+.++...+-+.+-.+++++..-.+  ..-+.-.-|.|+-...+. +..++.++.+.+...+ .|+      +....
T Consensus       987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~ia 1058 (1666)
T KOG0985|consen  987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIA 1058 (1666)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHH
Confidence            3455677788888888888888876432  111222233444433333 4455566666555433 222      22334


Q ss_pred             HhcCChhHHHHHHHhh--------------------------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhh
Q 038758          111 IKCGRMEITSGLFEEM--------------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW  164 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~--------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  164 (354)
                      ...+-+++|.++|+..                          .....+|+.+.++-.+.|.+.+|.+-|-+.  .|+..|
T Consensus      1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y 1136 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNY 1136 (1666)
T ss_pred             hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHH
Confidence            4445555565555554                          345678899999999999999998888665  466788


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----ccchhHH
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----ACGFVIC  240 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~  240 (354)
                      .-++....+.|.|++-.+.+...+  ++.-.|...  +.++-+|++.+++.+.+.++.---...+..-.    ..+.++.
T Consensus      1137 ~eVi~~a~~~~~~edLv~yL~MaR--kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMAR--KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHH--HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHH
Confidence            999999999999999999998777  666666655  47788999999887776654211111110000    4445555


Q ss_pred             HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhH
Q 038758          241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV  314 (354)
Q Consensus       241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~  314 (354)
                      |.-+|.     ++..|..|...++..|++..|.+.-++.-      +..||--+--+|...+.+..+      +-.-..-
T Consensus      1213 Akl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1213 AKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred             HHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence            555554     45678888889999999998887665542      567888888899988888776      3333445


Q ss_pred             HHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          315 WNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       315 ~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      ..-|++.|-..|-+++...+++.-.
T Consensus      1282 Leeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            7789999999999999999888654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.46  E-value=3.2e-07  Score=49.75  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP   63 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p   63 (354)
                      +||.+|++|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            68888999999999999999999999888887

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.41  E-value=1.9e-05  Score=71.18  Aligned_cols=256  Identities=11%  Similarity=0.101  Sum_probs=158.1

Q ss_pred             HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhh-HHHHHHHhc-----
Q 038758           73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNN-SLIDFYAKC-----  143 (354)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~li~~~~~~-----  143 (354)
                      ..+...|++++|.+.++.-.+ .+.............+.+.|+.++|..+|..+   .|+...|- .+..+....     
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence            345788999999999976443 23444556778889999999999999999998   55555554 444554222     


Q ss_pred             CchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChh-HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758          144 RYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFRE-EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI  220 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  220 (354)
                      .+.+...++++++..  |.......+.-.+..-..+. .+...+..+.  .+|+++   +|+.+-..|.......-...+
T Consensus        91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l--~KgvPs---lF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL--RKGVPS---LFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH--hcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence            246677777777654  43333333333333222332 3445555665  667655   444444444433222222333


Q ss_pred             hhHhhhhcccccc-ccchhHHHHHHhcccCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHH
Q 038758          221 HGYVLRHHIHLST-ACGFVICSCSVFNQLSTRDVV--VWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLP  296 (354)
Q Consensus       221 ~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~  296 (354)
                      +.......-.... ..+.       =.....|...  ++..+-..|-..|++++|++..++..++  .|+ ...|..-..
T Consensus       166 ~~~~~~~l~~~~~~~~~~-------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar  236 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGD-------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHhhcccCCCCCcc-------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence            3222221110000 0000       0000134443  4455667788999999999999999876  566 456777778


Q ss_pred             HhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCCCCc
Q 038758          297 ACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL  343 (354)
Q Consensus       297 ~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  343 (354)
                      .+-+.|++.+|         +.+ |-.+-+-....+.|+|++++|.+++....+++.
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            88899999887         333 556667778889999999999999999888653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.39  E-value=0.00017  Score=64.52  Aligned_cols=254  Identities=13%  Similarity=0.154  Sum_probs=165.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC----------------------hhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD----------------------YRVGKDVYD   89 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~   89 (354)
                      -|++|...|.++|.+++|.++|++..+.  ..+...|..+.++|.....                      ++....-|+
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            8999999999999999999999998875  4566667777777654321                      222223333


Q ss_pred             HHHHhc-c----------CCCceehhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCchhH
Q 038758           90 YMISIK-F----------EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRYLKV  148 (354)
Q Consensus        90 ~m~~~~-~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~~~~  148 (354)
                      .+...+ .          +-++..|..-+  -+..|+..+....|.+.    .|      -...|..+.+.|-..|+++.
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            333221 0          11122222211  22345555555555555    11      23467788899999999999


Q ss_pred             HHHHhccCCCCCh-------hhhHHHHHHHHhCCChhHHHHHHHHHHhhh---------cCCCC------CcchHHHHHH
Q 038758          149 SHCKFSKIKQKDL-------VSWNAMLAGYALGGFREEVTNLLDEMEMIQ---------TDMQP------NTISLSGVLA  206 (354)
Q Consensus       149 a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~p------~~~t~~~ll~  206 (354)
                      |..+|++..+.+-       .+|......=.++.+++.|+++.+.....-         .+.++      +...|+..+.
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            9999998876332       345555555667778888888877663100         00111      1223444444


Q ss_pred             HhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC----CCCc-chHHHHHHHHHhc---CC
Q 038758          207 ACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS----TRDV-VVWNSIISAFVRS---GQ  268 (354)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~----~~~~-~~~~~li~~~~~~---g~  268 (354)
                      .--..|-++....+++.+.+..+..+.          ...-++++.++|++..    -|++ ..||+.+.-+.++   ..
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence            445567888888999999888776655          6667888999999876    3443 5688877766653   36


Q ss_pred             HHHHHHHHHHHHHcCcCCCHhh
Q 038758          269 VVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       269 ~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                      .+.|..+|++..+ |++|...-
T Consensus       566 lEraRdLFEqaL~-~Cpp~~aK  586 (835)
T KOG2047|consen  566 LERARDLFEQALD-GCPPEHAK  586 (835)
T ss_pred             HHHHHHHHHHHHh-cCCHHHHH
Confidence            8999999999998 77776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=5.2e-05  Score=68.58  Aligned_cols=228  Identities=11%  Similarity=0.087  Sum_probs=173.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      -.+...+.+.|-...|..++++..-         |.-++..|...|+..+|..+..+..+  -+|++..|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            4456677788999999999998763         77788889999999999999888777  389999999999999999


Q ss_pred             CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      .-+++|.++++.....  .-..+.....+.++++++.+.|+.-.+   -...+|-..-.+..+.++++.|.+.|....  
T Consensus       471 s~yEkawElsn~~sar--A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv--  546 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR--AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV--  546 (777)
T ss_pred             HHHHHHHHHhhhhhHH--HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh--
Confidence            9999999998876332  112222223347899999999986543   345677777788889999999999998875  


Q ss_pred             hcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          191 QTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       191 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                        ...|| ...||.+-.++.+.+...+|...+.+..+.+.                     .+...|...+....+.|.+
T Consensus       547 --tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------------------~~w~iWENymlvsvdvge~  603 (777)
T KOG1128|consen  547 --TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------------------QHWQIWENYMLVSVDVGEF  603 (777)
T ss_pred             --hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------------------CCCeeeechhhhhhhcccH
Confidence              34555 56799999999999999999999988887764                     3456677788888999999


Q ss_pred             HHHHHHHHHHHHcCc-CCCHhhHHHHHHHhh
Q 038758          270 VDALDLLRDVIVANV-KPNTVTIVSVLPACL  299 (354)
Q Consensus       270 ~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~  299 (354)
                      ++|++.+.++.+... .-|......++....
T Consensus       604 eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  604 EDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            999999998865321 124444444444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00092  Score=56.91  Aligned_cols=265  Identities=12%  Similarity=0.043  Sum_probs=157.9

Q ss_pred             CChhHHHHHHHHHHhCC-CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           44 GYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      ++...+...+-.+.... ++-|......+.+.+...|+.++|...|+...-.+ +-+........-.+...|+.+....+
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L  288 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSAL  288 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHH
Confidence            33334444333333332 44556667788888888899998888888776443 22232333334445677888877777


Q ss_pred             HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH---HHHHHhCCChhHHHHHHHHHHhhhcCCC
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM---LAGYALGGFREEVTNLLDEMEMIQTDMQ  195 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~  195 (354)
                      ...+    ..+...|-.-........+++.|..+-++..+.+....-.+   -..+...+++++|.=-|+..+    .+.
T Consensus       289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq----~La  364 (564)
T KOG1174|consen  289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ----MLA  364 (564)
T ss_pred             HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH----hcc
Confidence            7666    23444444444555566778888888777665444333332   355777899999988898886    445


Q ss_pred             C-CcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc------------ccchhHHHHHHhcccC--CCC-cchHHHH
Q 038758          196 P-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------ACGFVICSCSVFNQLS--TRD-VVVWNSI  259 (354)
Q Consensus       196 p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~a~~~~~~~~--~~~-~~~~~~l  259 (354)
                      | +...|.-++.+|...|.+.+|..+-....+.-.....            ....-++|.+++++..  .|+ ...-+.+
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~  444 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI  444 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence            4 4678999999999999888877665554432111000            3334455666665543  232 2233444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      ...+...|...+++.++++-...  .||...                        .+.|.+.+...+.+.+|++.|....
T Consensus       445 AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L------------------------H~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  445 AELCQVEGPTKDIIKLLEKHLII--FPDVNL------------------------HNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHHHHhhCccchHHHHHHHHHhh--ccccHH------------------------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            45556666777777777666532  455554                        5555555555555555555555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.31  E-value=2.8e-05  Score=61.49  Aligned_cols=156  Identities=8%  Similarity=0.020  Sum_probs=116.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG  114 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  114 (354)
                      .-+..|...|+++.+....+.+..    |. .       .+...++.+++...++...+.+ +.+...|..|...|...|
T Consensus        21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         21 LCVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence            345568889999887655533321    11 0       1223566777777787777765 778889999999999999


Q ss_pred             ChhHHHHHHHhh----ccccchhhHHHHHH-HhcCc--hhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          115 RMEITSGLFEEM----DQDFLVNNSLIDFY-AKCRY--LKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       115 ~~~~a~~~~~~~----~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ++++|...|++.    +.+...+..+..++ ...|+  .++|.+++++..+  | +...+..+...+.+.|++++|...|
T Consensus        88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999988    45677777777764 67677  5999999998875  3 5677888888999999999999999


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHH
Q 038758          185 DEMEMIQTDMQPNTISLSGVLAA  207 (354)
Q Consensus       185 ~~m~~~~~~~~p~~~t~~~ll~~  207 (354)
                      +.+.   ...+|+..-+..+ .+
T Consensus       168 ~~aL---~l~~~~~~r~~~i-~~  186 (198)
T PRK10370        168 QKVL---DLNSPRVNRTQLV-ES  186 (198)
T ss_pred             HHHH---hhCCCCccHHHHH-HH
Confidence            9995   4556666555444 54

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.27  E-value=1.4e-06  Score=46.07  Aligned_cols=31  Identities=29%  Similarity=0.593  Sum_probs=29.0

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIVANV  284 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  284 (354)
                      ++||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4799999999999999999999999998874

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.23  E-value=0.00071  Score=59.17  Aligned_cols=153  Identities=5%  Similarity=-0.112  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH---HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP---KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD  108 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  108 (354)
                      .|..+-..+...|+.+.+...+....+.. +++.....   .....+...|++++|.++++...+.. +.+...+.. ..
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~   84 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL   84 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence            45566666777777887766666665542 22222111   11223456778888888888877653 333333331 11


Q ss_pred             HHHh----cCChhHHHHHHHhhccc----cchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCCh
Q 038758          109 LFIK----CGRMEITSGLFEEMDQD----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFR  177 (354)
Q Consensus       109 ~~~~----~g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~  177 (354)
                      .+..    .+..+.+.+.++...+.    ......+...+...|++++|+..+++..+  | +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence            2222    34444444443322111    11112223344445555555555544432  1 233344444445555555


Q ss_pred             hHHHHHHHHH
Q 038758          178 EEVTNLLDEM  187 (354)
Q Consensus       178 ~~a~~~~~~m  187 (354)
                      ++|...+++.
T Consensus       165 ~eA~~~l~~~  174 (355)
T cd05804         165 KEGIAFMESW  174 (355)
T ss_pred             HHHHHHHHhh
Confidence            5555555444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.23  E-value=8.3e-05  Score=60.89  Aligned_cols=179  Identities=12%  Similarity=-0.012  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKR  104 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~  104 (354)
                      .+-.+...+.+.|++++|...|++.....  |+.    ..+..+...+...|+++.|...++.+.+.. +.+..   ++.
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~  111 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYY  111 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHH
Confidence            44556667778888888888888877653  332    345666777778888888888888887653 22222   344


Q ss_pred             hHHHHHHhc--------CChhHHHHHHHhh---cccc-chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHH
Q 038758          105 PLLDLFIKC--------GRMEITSGLFEEM---DQDF-LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA  172 (354)
Q Consensus       105 ~li~~~~~~--------g~~~~a~~~~~~~---~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~  172 (354)
                      .+..++.+.        |+.+.|.+.|+++   .|+. ..+..+...    +......          ......+...+.
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~----~~~~~~~----------~~~~~~~a~~~~  177 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM----DYLRNRL----------AGKELYVARFYL  177 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH----HHHHHHH----------HHHHHHHHHHHH
Confidence            444445443        6677777777766   2221 111111100    0000000          000113344566


Q ss_pred             hCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +.|++++|...++.......+-+.....+..+..++.+.|+.++|...++.+...
T Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6677777777776665211112223455666666677777777776666655543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.23  E-value=3.4e-05  Score=63.20  Aligned_cols=165  Identities=8%  Similarity=-0.103  Sum_probs=101.0

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc---eehhhHHHHHHhcCChhHHHHHHHhh---ccc-cc---hh
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA---CVKRPLLDLFIKCGRMEITSGLFEEM---DQD-FL---VN  133 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~---~~~-~~---~~  133 (354)
                      ....+..+...+...|+++.|...++.+.+.. +.+.   ..+..+..++.+.|++++|...++++   .|+ ..   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            44456677777888999999999999887653 2222   35677788888999999999999887   222 22   23


Q ss_pred             hHHHHHHHhc--------CchhHHHHHhccCCC--CChh-hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758          134 NSLIDFYAKC--------RYLKVSHCKFSKIKQ--KDLV-SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS  202 (354)
Q Consensus       134 ~~li~~~~~~--------~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~  202 (354)
                      ..+..++.+.        |+.++|.+.|+++..  |+.. .+..+... ..         ......          ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~-~~---------~~~~~~----------~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM-DY---------LRNRLA----------GKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH-HH---------HHHHHH----------HHHH
Confidence            3444444433        556666666666543  3221 11111100 00         000000          0012


Q ss_pred             HHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccC
Q 038758          203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLS  249 (354)
Q Consensus       203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~  249 (354)
                      .+...+.+.|++.+|...+....+.....+.             ..|+.++|...++.+.
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455688899999999999988876543221             8888899888877653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.22  E-value=1.2e-05  Score=55.20  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCC-CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHH
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS  243 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  243 (354)
                      -..|..+...+++.....+|+.++  ..|+ .|+..+|+.++.+.++..                               
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslk--RN~i~lPsv~~Yn~VL~Si~~R~-------------------------------   75 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLK--RNGITLPSVELYNKVLKSIAKRE-------------------------------   75 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHcc-------------------------------
Confidence            345666677799999999999999  9999 999999999999887552                               


Q ss_pred             HhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758          244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK  300 (354)
Q Consensus       244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  300 (354)
                             .|.         ..-.+++-+.+.+|++|...+++|+..||+.++.++.+
T Consensus        76 -------lD~---------~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   76 -------LDS---------EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             -------ccc---------hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence                   221         11123456788999999999999999999988887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.22  E-value=7.1e-05  Score=67.92  Aligned_cols=180  Identities=12%  Similarity=0.065  Sum_probs=113.9

Q ss_pred             HHHHhcCchhHHHHHhccCCCCChhh--hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK  215 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~  215 (354)
                      .+-.....+.+|+.+++.++..++.+  |..+...|...|+++.|.++|.+..           .++-.|..|.+.|.+.
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccccHH
Confidence            34455667777777777776544333  6667777888888888888886553           2455666777778777


Q ss_pred             ccchhhhHhhhhcccccc---------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          216 LGKAIHGYVLRHHIHLST---------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      .|.++-.......-....         +.|++.+|.++|-.+..|+.     -|..|-+.|..+..+++.++-.  | ..
T Consensus       809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~  880 (1636)
T KOG3616|consen  809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DH  880 (1636)
T ss_pred             HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC--h-hh
Confidence            777665444322111111         67788888888887777764     4677888888888888776543  1 11


Q ss_pred             CHhhHHHHHHHhhccCcccCc--cccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758          287 NTVTIVSVLPACLKLAALPQG--LGTGSFVWNALIDMYGRCGAIQKSRKIFV  336 (354)
Q Consensus       287 ~~~t~~~li~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~  336 (354)
                      -..|.-.+-.-+-..|++..+  --....-|.+-+++|-..+-+++|.++-+
T Consensus       881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence            123444555556666666555  11223336667777777777777777654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.21  E-value=1.9e-06  Score=45.48  Aligned_cols=30  Identities=27%  Similarity=0.621  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV   61 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~   61 (354)
                      +||+||++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            688888888888888888888888888764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.21  E-value=0.00035  Score=64.41  Aligned_cols=116  Identities=14%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CC--------cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GV--------RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV  102 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  102 (354)
                      .|..|.+.|.+.++++-|.-.+-.|... |.        .|+ .+=..+.-.....|.+++|..+|.+-++.+       
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D-------  830 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD-------  830 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-------
Confidence            8888999999998888888888777653 21        222 222222223357788899999998877643       


Q ss_pred             hhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          103 KRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       103 ~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                        .|=..|...|.+++|.++-+.-  ..-..+|..-..-+-..+|.+.|++.|++..
T Consensus       831 --LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  831 --LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             --HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence              4556677788888888877654  1223456666666777788888888887764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.19  E-value=0.0016  Score=58.60  Aligned_cols=153  Identities=11%  Similarity=0.122  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .|-.-+....++|+.......|+..... .+..-...|...+......+-.+.+..+++...+.  .  +..-+..|..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~--P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--A--PEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--C--HHHHHHHHHHH
Confidence            5555566666777777777777776543 23333445777777777777777777777777643  2  33366677777


Q ss_pred             HhcCChhHHHHHHHhh-----------ccccchhhHHHHHHHhcCc---hhHHHHHhccCCC--CC--hhhhHHHHHHHH
Q 038758          111 IKCGRMEITSGLFEEM-----------DQDFLVNNSLIDFYAKCRY---LKVSHCKFSKIKQ--KD--LVSWNAMLAGYA  172 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~  172 (354)
                      ++.++.++|-+.+...           +.+-..|.-+.+..++.-+   --....+++.+..  +|  ...|+.|..-|.
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI  259 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI  259 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence            7788888777777776           2222334333333333221   1223333443332  22  235666666666


Q ss_pred             hCCChhHHHHHHHHHH
Q 038758          173 LGGFREEVTNLLDEME  188 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~  188 (354)
                      +.|++++|.++|++..
T Consensus       260 r~g~~ekarDvyeeai  275 (835)
T KOG2047|consen  260 RSGLFEKARDVYEEAI  275 (835)
T ss_pred             HhhhhHHHHHHHHHHH
Confidence            7777777766666553

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.12  E-value=1.6e-05  Score=54.70  Aligned_cols=81  Identities=19%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-cCCcccHHHHHHHHhccC--------ChhhHHHHHHHHHHhccCCCcee
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELK--------DYRVGKDVYDYMISIKFEGNACV  102 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~  102 (354)
                      |-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..        +.-....+|+.|...+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            444566677777999999999999999999 999999999999887553        34467899999999999999999


Q ss_pred             hhhHHHHHHh
Q 038758          103 KRPLLDLFIK  112 (354)
Q Consensus       103 ~~~li~~~~~  112 (354)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=5.3e-05  Score=66.70  Aligned_cols=85  Identities=9%  Similarity=0.003  Sum_probs=66.4

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  119 (354)
                      +.+.|++.+|.-.|+...+.+ +-+...|-.|..+-...++-..|+..+.+..+.. +-|....-+|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            457788888888888888775 3466678888888888888888888888887764 55666777777788888888888


Q ss_pred             HHHHHhh
Q 038758          120 SGLFEEM  126 (354)
Q Consensus       120 ~~~~~~~  126 (354)
                      ...++.-
T Consensus       373 l~~L~~W  379 (579)
T KOG1125|consen  373 LKMLDKW  379 (579)
T ss_pred             HHHHHHH
Confidence            8887775

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.09  E-value=0.00011  Score=58.08  Aligned_cols=106  Identities=11%  Similarity=0.107  Sum_probs=79.3

Q ss_pred             CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHh-hhhcC--ccccchhhhHhhhhccccccc
Q 038758          159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAAC-AQVKG--VKLGKAIHGYVLRHHIHLSTA  234 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~  234 (354)
                      .|...|..+...|...|++++|...|+...    .+.| +...+..+..++ ...|+  .++|..+++...+..      
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d------  140 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL----QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD------  140 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC------
Confidence            466778888888999999999999998876    2334 345555555553 55565  478888888888776      


Q ss_pred             cchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                                     +.+..++..+-..+.+.|++++|+..|+++.+.. +|+..-
T Consensus       141 ---------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r  180 (198)
T PRK10370        141 ---------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR  180 (198)
T ss_pred             ---------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence                           3467788888899999999999999999998754 455543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00026  Score=58.96  Aligned_cols=301  Identities=12%  Similarity=0.103  Sum_probs=160.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh-HHHHHHh
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-LLDLFIK  112 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~  112 (354)
                      ..|++.--+.++-++-..+-+.+...     ...--+|.+.....-.+++|++++......  .|+-...|. +.-+|.+
T Consensus       125 RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  125 RLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHh
Confidence            34445555566655555554444321     122334444444445677777777776643  233333333 3334556


Q ss_pred             cCChhHHHHHHHhh----ccccchhhHHHHHHHhc--C---------------------------------chhHHHHHh
Q 038758          113 CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC--R---------------------------------YLKVSHCKF  153 (354)
Q Consensus       113 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~--~---------------------------------~~~~a~~~~  153 (354)
                      ..-++-+.+++.-.    +.++..-|....-..+.  |                                 +-+.|.+++
T Consensus       198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVL  277 (557)
T KOG3785|consen  198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVL  277 (557)
T ss_pred             cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhc
Confidence            66666555555443    22223333222222221  1                                 122222222


Q ss_pred             ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH-hh----hhcCccccchhhhHhhhhc
Q 038758          154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA-CA----QVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~-~~----~~~~~~~a~~~~~~~~~~~  228 (354)
                      -.+...=+..--.|+--|.+.++..+|..+.++..    -..|-......+..+ +.    .....+-|.+.|+.+-..+
T Consensus       278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa  353 (557)
T KOG3785|consen  278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA  353 (557)
T ss_pred             hHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence            11111111122234555788899999988877664    222322222222221 11    1223556777777777777


Q ss_pred             cccccccchhHHHHHHh------------cccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758          229 IHLSTACGFVICSCSVF------------NQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV  292 (354)
Q Consensus       229 ~~~~~~~~~~~~a~~~~------------~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  292 (354)
                      .+.++-.|+..-|--+|            +.+.    ..|...| .+..+++..|++.+|+++|-++....+ .|..+|.
T Consensus       354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~  431 (557)
T KOG3785|consen  354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYK  431 (557)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHH
Confidence            77776555554444333            2222    2233333 356788889999999999988764433 3566776


Q ss_pred             HHH-HHhhccCcccCc----cc---c-chhH-HHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHH
Q 038758          293 SVL-PACLKLAALPQG----LG---T-GSFV-WNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWN  347 (354)
Q Consensus       293 ~li-~~~~~~~~~~~~----~~---~-~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~  347 (354)
                      +++ ++|.+.+.++.+    ++   | +..+ ...+.+-|.+++.+--|-+.|+++..  |++..|.
T Consensus       432 s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe  498 (557)
T KOG3785|consen  432 SMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE  498 (557)
T ss_pred             HHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence            654 577788888777    11   1 2222 23345678899999999999988776  7777664

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=8e-05  Score=64.75  Aligned_cols=120  Identities=9%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      .+|++.+...++++.|.++|+++.+..  |+  ....+.+.+...++-.+|.+++++..+.. +.+......-...+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            345566666677777777777777654  33  34445666666666667777777666442 33444444444555566


Q ss_pred             CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ++.+.|..+.++.                              .+  |+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       248 ~~~~lAL~iAk~a------------------------------v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKA------------------------------VELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHH------------------------------HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            6666665555543                              32  33 3366666666666666666666666553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN02789 farnesyltranstransferase

Probab=98.05  E-value=0.0012  Score=56.26  Aligned_cols=222  Identities=9%  Similarity=-0.028  Sum_probs=146.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      +++.+-..+...++.++|+.+..+..+.  .|+.. .|+.--..+...| +++++.+.++.+.+.+ +.+..+|+..-.+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            6677777788889999999999999875  44443 3555444555666 6799999999998875 5666677766666


Q ss_pred             HHhcCCh--hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhC---CCh
Q 038758          110 FIKCGRM--EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG---GFR  177 (354)
Q Consensus       110 ~~~~g~~--~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~  177 (354)
                      +.+.|+.  +++..+++++    +.+..+|+.....+.+.|+++++++.++++.+   .|...|+.....+.+.   |..
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            6666653  6677777766    55677888888889999999999999998875   3556677666555544   223


Q ss_pred             ----hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc----CccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          178 ----EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       178 ----~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                          ++.++...++.  . --+-|...|+.+-..+...+    ...++........+.+                     
T Consensus       196 ~~~~e~el~y~~~aI--~-~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~---------------------  251 (320)
T PLN02789        196 EAMRDSELKYTIDAI--L-ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD---------------------  251 (320)
T ss_pred             cccHHHHHHHHHHHH--H-hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc---------------------
Confidence                35566665554  1 12334566776666665522    2233444444333322                     


Q ss_pred             CCCcchHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 038758          250 TRDVVVWNSIISAFVRSG------------------QVVDALDLLRDVI  280 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g------------------~~~~a~~~~~~m~  280 (354)
                      ..+......|+..|+...                  ..++|..++..+.
T Consensus       252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            335566777777777532                  2356777777773

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.04  E-value=0.00046  Score=67.07  Aligned_cols=206  Identities=13%  Similarity=0.034  Sum_probs=159.4

Q ss_pred             chhhhhhHhhhhh----hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcc---cHHHHHHHHhccCChhhHHHHHHH
Q 038758           19 CAFLGSQLLEVFC----NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHF---VCPKVYKACSELKDYRVGKDVYDY   90 (354)
Q Consensus        19 ~~~~~~~li~~~~----~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~   90 (354)
                      +..-+..|+.+-.    .|-.-|......++.++|.+++++.... +++-...   .|.+++..-...|.-+...++|++
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            4555555554443    7888888899999999999999998754 2222222   466677666677788889999999


Q ss_pred             HHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC---h
Q 038758           91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---L  161 (354)
Q Consensus        91 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~  161 (354)
                      ..+..  -...+|..|...|.+.+..++|-++++.|    .....+|...+..+.+..+-+.|..++.+..+  |.   +
T Consensus      1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            88753  22346889999999999999999999999    56778999999999999999999999877654  32   2


Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      ....-.+..-.+.|+.+.+..+|+...   ...+--.-.|+..+..-.+.|+.+.++.+|+++...++
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll---~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLL---SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHH---hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            333444455567899999999999885   23333456799999999999999999999999999887

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.01  E-value=0.00015  Score=54.27  Aligned_cols=88  Identities=11%  Similarity=-0.002  Sum_probs=56.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -..+...|++++|...|++..... +.+...|..+..++...|++++|...|+...+.+ +.+...+..+..++...|++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence            445556677777777777666543 3345556666666666777777777777766554 45566666666666667777


Q ss_pred             hHHHHHHHhh
Q 038758          117 EITSGLFEEM  126 (354)
Q Consensus       117 ~~a~~~~~~~  126 (354)
                      ++|...|++.
T Consensus       109 ~eAi~~~~~A  118 (144)
T PRK15359        109 GLAREAFQTA  118 (144)
T ss_pred             HHHHHHHHHH
Confidence            7766666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.00025  Score=56.60  Aligned_cols=150  Identities=9%  Similarity=-0.045  Sum_probs=107.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      +-..+...|+-+....+....... ..-|....+.......+.|++..|...+.+..... ++|...|+.+--+|.+.|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence            344555667777777666654432 12233345557777888888888888888877655 7788888888888888888


Q ss_pred             hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      .+.|..-|.+.    ..+....|.|...|.-.|+.+.|+.++.....   .|...-..+.......|+++.|.++...-
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            88888877776    55667778888888888888888888765542   36666777777778888888887776543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.00  E-value=6.6e-05  Score=65.57  Aligned_cols=123  Identities=13%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758          159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV  238 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  238 (354)
                      -+......+++.+....+.+.+..++...+........-..|.+++++.|.+.|..+.+..++..=...|+         
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi---------  134 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI---------  134 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc---------
Confidence            35556666677776667777777777777621223333345556778888888777777777777777777         


Q ss_pred             HHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       239 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                                 -||..++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       135 -----------F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  135 -----------FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             -----------CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence                       7788888888888888888888888888877776666777777777766665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.00  E-value=0.00065  Score=64.82  Aligned_cols=217  Identities=10%  Similarity=0.053  Sum_probs=129.9

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~  143 (354)
                      ...+..|+..+...+++++|.++.+...+.  .|+ ...|-.+...+...++.+.+..+            .++......
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~~   96 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQN   96 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------hhhhhcccc
Confidence            334667777777777777777777755443  333 33344444456666665555433            223333333


Q ss_pred             CchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhh
Q 038758          144 RYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH  221 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~  221 (354)
                      .++..++.+...+..  .+...+-.+..+|-+.|+.++|..+|+++.  +.. +-|....|.+...++.. ++++|..++
T Consensus        97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720         97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV--KAD-RDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            333333333333332  234467778888889999999999999987  444 44567778888788877 888888776


Q ss_pred             hHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh-HHHHHHHhhc
Q 038758          222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT-IVSVLPACLK  300 (354)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~  300 (354)
                      .+..                                   ..|...+++.++.++|.++...  .|+... +..+++....
T Consensus       173 ~KAV-----------------------------------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~  215 (906)
T PRK14720        173 KKAI-----------------------------------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLG  215 (906)
T ss_pred             HHHH-----------------------------------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHh
Confidence            5433                                   3355566777888888888755  333332 2223322222


Q ss_pred             cCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       301 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .-.    +.--+.++.-+-+.|-..++++++..+++.+.+
T Consensus       216 ~~~----~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~  251 (906)
T PRK14720        216 HRE----FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE  251 (906)
T ss_pred             hhc----cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence            111    223344556666777777778888888877776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.0011  Score=53.10  Aligned_cols=122  Identities=15%  Similarity=-0.008  Sum_probs=75.8

Q ss_pred             HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV  214 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~  214 (354)
                      ..+.-.|+-+....+......   .|....+..+....+.|++..|...+++.   ...-++|..+|+.+--+|.+.|++
T Consensus        74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA---~~l~p~d~~~~~~lgaaldq~Gr~  150 (257)
T COG5010          74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA---ARLAPTDWEAWNLLGAALDQLGRF  150 (257)
T ss_pred             HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH---hccCCCChhhhhHHHHHHHHccCh
Confidence            344444444444444444321   23344555666777777777777777777   345556677777777777777777


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                      +.|+.-|.+..+...                     .+....|.+.-.+.-.|+.+.|..++......+
T Consensus       151 ~~Ar~ay~qAl~L~~---------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         151 DEARRAYRQALELAP---------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             hHHHHHHHHHHHhcc---------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            777777766666542                     244556666667777777777777777776543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.0011  Score=56.37  Aligned_cols=250  Identities=11%  Similarity=0.015  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      -...+-..+...|+.++|...|++..-.  .|+..+ ...-.-.+.+.|+.+....+...+.... +-+..-|..-....
T Consensus       234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  234 LMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLL  310 (564)
T ss_pred             HHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhh
Confidence            4556777888999999999999998754  343322 2222222357778887777777766442 33444455555556


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      -...+++.|+.+-++.    +.+...+-.-...+...++.++|.=.|+....  | +...|.-|+..|...|++.+|.-+
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            6777888888887776    22333333334567778888888888875543  3 677889999999988988888766


Q ss_pred             HHHHHhhhcCCCCCcchHHHHH-HHhh-hhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--
Q 038758          184 LDEMEMIQTDMQPNTISLSGVL-AACA-QVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--  249 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--  249 (354)
                      -++.-   .-++-+..+.+.+- ..|. ....-++|.++++.-++..+.-..          ..|...+++.++++..  
T Consensus       391 An~~~---~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  391 ANWTI---RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII  467 (564)
T ss_pred             HHHHH---HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence            55442   12333444554442 2222 122335666666555544332211          5667777777777654  


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      -||....+.|-..+...+.+.+|++.|......  .|+..
T Consensus       468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~  505 (564)
T KOG1174|consen  468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK  505 (564)
T ss_pred             ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence            689999999999999999999999999988754  45443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.99  E-value=0.00012  Score=54.80  Aligned_cols=113  Identities=8%  Similarity=-0.126  Sum_probs=84.1

Q ss_pred             hccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccc
Q 038758          153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS  232 (354)
Q Consensus       153 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  232 (354)
                      |++..+.++..+..+...+...|++++|...|+...  .. -+.+...+..+-.++.+.|++++|...|+...+..    
T Consensus        16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al--~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----   88 (144)
T PRK15359         16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLV--MA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----   88 (144)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            333333344445566777888899999999998886  22 23356677777888888899999988888888765    


Q ss_pred             cccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       233 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                                       +.+...+..+..++.+.|+.++|+..|+...+.  .|+...+
T Consensus        89 -----------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~  128 (144)
T PRK15359         89 -----------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW  128 (144)
T ss_pred             -----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence                             457788888899999999999999999998854  5665443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.96  E-value=0.002  Score=63.90  Aligned_cols=279  Identities=9%  Similarity=-0.017  Sum_probs=161.5

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCc------CCcc--cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC----ceehhhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVR------PDHF--VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPL  106 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l  106 (354)
                      .+...|+++++..++......--.      +...  ....+-..+...|+++.|...++...+.--..+    ....+.+
T Consensus       418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l  497 (903)
T PRK04841        418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL  497 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            345678899998888877543111      1111  111222344578899999999988775311111    1234556


Q ss_pred             HHHHHhcCChhHHHHHHHhhc--------c--ccchhhHHHHHHHhcCchhHHHHHhccCCC-------CC----hhhhH
Q 038758          107 LDLFIKCGRMEITSGLFEEMD--------Q--DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------KD----LVSWN  165 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~~--------~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~  165 (354)
                      ...+...|++++|...+++..        +  ...+...+...+...|++++|...+++...       ++    ...+.
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            667788999999999988871        1  122344566678889999999888766532       11    12344


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cchHHHHHHHhhhhcCccccchhhhHhhhhccccc-----------
Q 038758          166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------  232 (354)
Q Consensus       166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------  232 (354)
                      .+...+...|++++|...+.+.........+.  ...+..+.......|+.+.|...+...........           
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~  657 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK  657 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence            44556677899999999988775211112222  23344445566778888888887777654311100           


Q ss_pred             ------cccchhHHHHHHhcccCCCCcc-------hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCCHhhHHHHH
Q 038758          233 ------TACGFVICSCSVFNQLSTRDVV-------VWNSIISAFVRSGQVVDALDLLRDVIVA----NVKPNTVTIVSVL  295 (354)
Q Consensus       233 ------~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li  295 (354)
                            ...|+.+.|...+.....+...       .+..+..++...|+.++|...+++..+.    |..++        
T Consensus       658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~--------  729 (903)
T PRK04841        658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD--------  729 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH--------
Confidence                  0234555555555444322110       1234455666777777777777776543    21111        


Q ss_pred             HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                     ...+...+..++.+.|+.++|.+.+.+..+
T Consensus       730 ---------------~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        730 ---------------LNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                           112344555666777777777777766554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00015  Score=57.89  Aligned_cols=173  Identities=10%  Similarity=0.133  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-Chhh
Q 038758           85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVS  163 (354)
Q Consensus        85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~  163 (354)
                      ..+.+.+.......+......-...|++.|++++|++.... ..+......=+..+.+..+++-|++.+++|.+- +..|
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t  171 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT  171 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            34555555444344433444445678999999999999888 555556666667788889999999999999984 4556


Q ss_pred             hHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758          164 WNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI  239 (354)
Q Consensus       164 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  239 (354)
                      .+.|..++++    .+...+|.-+|++|   .....|+..+.+-...++...|++++|+.+++..+....          
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~---s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~----------  238 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEEL---SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA----------  238 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHH---hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC----------
Confidence            6666666554    46789999999999   566899999999999999999999999999988887653          


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 038758          240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQV-VDALDLLRDVIVA  282 (354)
Q Consensus       240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~  282 (354)
                                 .+..+...+|-.-...|.. +-..+...+++..
T Consensus       239 -----------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  239 -----------KDPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             -----------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence                       3444554555444455554 4445566666543

>PLN02789 farnesyltranstransferase

Probab=97.92  E-value=0.0019  Score=55.04  Aligned_cols=202  Identities=10%  Similarity=0.024  Sum_probs=130.2

Q ss_pred             HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCch-
Q 038758           73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYL-  146 (354)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~-  146 (354)
                      ..+...++.++|..+.+.+.+.. +-+..+|+.--.++...| ++++++..++++    +.+..+|+.....+.+.|+. 
T Consensus        45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence            34455678889999999988765 445556776666777777 679999999887    44555677665556666653 


Q ss_pred             -hHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC---cc----
Q 038758          147 -KVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG---VK----  215 (354)
Q Consensus       147 -~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~---~~----  215 (354)
                       +++..+++++.+   .|..+|+...-.+.+.|+++++++.++++.  +.+.. |...|+.....+.+.+.   .+    
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I--~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL--EEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence             667777777664   456678777778888899999999999997  44433 44556655544444322   21    


Q ss_pred             ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc----CCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS----GQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                      ..........+..                     +.|...|+.+...+...    ++..+|.+.+.+..+.+ ..+....
T Consensus       201 ~el~y~~~aI~~~---------------------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al  258 (320)
T PLN02789        201 SELKYTIDAILAN---------------------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFAL  258 (320)
T ss_pred             HHHHHHHHHHHhC---------------------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHH
Confidence            1111111222111                     45778898888888773    44566888888776533 2344555


Q ss_pred             HHHHHHhhc
Q 038758          292 VSVLPACLK  300 (354)
Q Consensus       292 ~~li~~~~~  300 (354)
                      ..|+..|+.
T Consensus       259 ~~l~d~~~~  267 (320)
T PLN02789        259 SDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHh
Confidence            555555553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00091  Score=58.70  Aligned_cols=82  Identities=11%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChh
Q 038758          260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQ  329 (354)
Q Consensus       260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~  329 (354)
                      -..+.+.|++..|+..|.++++.. +-|...|..--.+|.+.|.+..+         ..| ....|..=..++.-..+++
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd  443 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD  443 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999998775 44667888888899999988777         222 3344444445555666888


Q ss_pred             HHHHHhhcCCCCC
Q 038758          330 KSRKIFVLMPHKN  342 (354)
Q Consensus       330 ~A~~~~~~m~~~~  342 (354)
                      +|.+.|++-.+.|
T Consensus       444 kAleay~eale~d  456 (539)
T KOG0548|consen  444 KALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHhcC
Confidence            8999998888755

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.91  E-value=0.0025  Score=55.50  Aligned_cols=143  Identities=14%  Similarity=0.165  Sum_probs=104.1

Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhccc
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL  248 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (354)
                      .+...|++++|+..++.+.   .. .|+. .-.......+.+.++.++|.+.++.+...                     
T Consensus       315 ~~~~~~~~d~A~~~l~~L~---~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------------------  369 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLI---AA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---------------------  369 (484)
T ss_pred             HHHHhcccchHHHHHHHHH---Hh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------------
Confidence            3446788888888888875   22 3444 44444555677778888888777777766                     


Q ss_pred             CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758          249 STRD-VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       249 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  327 (354)
                       .|+ ...+-.+-.+|.+.|++.+|+.++++..... +-|...|..|-++|...|+..++       -...-++|...|+
T Consensus       370 -~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a-------~~A~AE~~~~~G~  440 (484)
T COG4783         370 -DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA-------LLARAEGYALAGR  440 (484)
T ss_pred             -CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH-------HHHHHHHHHhCCC
Confidence             344 4556667788999999999999999887543 55778899999999999985543       4556778888999


Q ss_pred             hhHHHHHhhcCCC---CCcccH
Q 038758          328 IQKSRKIFVLMPH---KNLVSW  346 (354)
Q Consensus       328 ~~~A~~~~~~m~~---~~~~~~  346 (354)
                      ++.|...+...++   +|..+|
T Consensus       441 ~~~A~~~l~~A~~~~~~~~~~~  462 (484)
T COG4783         441 LEQAIIFLMRASQQVKLGFPDW  462 (484)
T ss_pred             HHHHHHHHHHHHHhccCCcHHH
Confidence            9999988877765   555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.91  E-value=0.0013  Score=60.21  Aligned_cols=135  Identities=10%  Similarity=0.149  Sum_probs=98.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      |.+-.....+.+|+.+++.+....  .-..-|..+.+-|...|+++.|.++|.+.         ..++--|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            344556678888888888877653  23334777888899999999999998643         2356678899999999


Q ss_pred             hHHHHHHHhhcc---ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          117 EITSGLFEEMDQ---DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       117 ~~a~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      +.|.++-++...   ....|-+-..-+-+.|++.+|++++-.+..|+.     .|..|-+.|..++.+++.+.-
T Consensus       808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence            999999888722   334454555567778899999999888887764     356677777777777766644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.89  E-value=0.0016  Score=54.23  Aligned_cols=186  Identities=9%  Similarity=-0.000  Sum_probs=112.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHH---HHHhccCChhhHHHHHHHHHHhccCCCceeh-hhHHHHHH
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY---KACSELKDYRVGKDVYDYMISIKFEGNACVK-RPLLDLFI  111 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~  111 (354)
                      +-..+..+|++..|+.-|....+.    |...|-++.   ..|...|+-..|..-++...+.  +||-..- -.-...+.
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence            345566678888888888877654    333344433   4566777777777777766654  5654322 22334567


Q ss_pred             hcCChhHHHHHHHhh---ccc--------------cchh--hHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758          112 KCGRMEITSGLFEEM---DQD--------------FLVN--NSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA  169 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~~~--------------~~~~--~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~  169 (354)
                      +.|.++.|..=|+.+   .|+              ...|  ...+..+.-.|+...|+.....+.+   .|...|..-..
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak  197 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK  197 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence            888888888888877   111              1111  1234455566777777777766653   46666777777


Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  230 (354)
                      +|...|++.+|+.=++...   .--.-++.++--+-..+...|+.+.+.....+.++.+.+
T Consensus       198 c~i~~~e~k~AI~Dlk~as---kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  198 CYIAEGEPKKAIHDLKQAS---KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD  255 (504)
T ss_pred             HHHhcCcHHHHHHHHHHHH---hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence            8888888877766555543   112233444444455566677776666666666655443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.86  E-value=0.0013  Score=62.82  Aligned_cols=140  Identities=9%  Similarity=0.081  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhccCCC-----------
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC-PKVYKACSELKDYRVGKDVYDYMISIKFEGN-----------   99 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------   99 (354)
                      .|..|+..+...+++++|.++.+.-.+.  .|+...+ -.+...+.+.++...+.-+  .+.+. +..+           
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~  107 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICD  107 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHH
Confidence            7889999999999999999999976664  4555543 3333355566665555544  22221 1112           


Q ss_pred             --------ceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH
Q 038758          100 --------ACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM  167 (354)
Q Consensus       100 --------~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  167 (354)
                              ...+..+..+|-+.|+.+++.++++++    +.+..+.|.+...|... ++++|++++.+...         
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---------  177 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---------  177 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------
Confidence                    245556666666777777777777776    44566666677777766 77777666655322         


Q ss_pred             HHHHHhCCChhHHHHHHHHHH
Q 038758          168 LAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~  188 (354)
                        .+...+++.++.++|.++.
T Consensus       178 --~~i~~kq~~~~~e~W~k~~  196 (906)
T PRK14720        178 --RFIKKKQYVGIEEIWSKLV  196 (906)
T ss_pred             --HHHhhhcchHHHHHHHHHH
Confidence              2444455555555555553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.86  E-value=0.00014  Score=53.82  Aligned_cols=105  Identities=10%  Similarity=-0.026  Sum_probs=59.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      ...+...+...|++++|.+.++...+.+ +.+...+..+..++.+.|++++|...+++.                     
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~---------------------   77 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA---------------------   77 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4445555566667777777776666544 445555666666666666666666655543                     


Q ss_pred             HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758          148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV  204 (354)
Q Consensus       148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l  204 (354)
                            -.+...+...+..+...+...|++++|.+.|+...  .  ..|+...+..+
T Consensus        78 ------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~  124 (135)
T TIGR02552        78 ------AALDPDDPRPYFHAAECLLALGEPESALKALDLAI--E--ICGENPEYSEL  124 (135)
T ss_pred             ------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--hccccchHHHH
Confidence                  00111234455556666667777777777776665  2  33555444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.85  E-value=0.005  Score=56.59  Aligned_cols=218  Identities=10%  Similarity=0.029  Sum_probs=141.5

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      -|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++..|.++.+.....- ..|......-+..=...++.++
T Consensus       487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~  565 (799)
T KOG4162|consen  487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREE  565 (799)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHH
Confidence            366778999999999999888667778888888888888999999999888776431 1121111112222222444444


Q ss_pred             HHHHHHhh-------------------------------------------------------------------ccc--
Q 038758          119 TSGLFEEM-------------------------------------------------------------------DQD--  129 (354)
Q Consensus       119 a~~~~~~~-------------------------------------------------------------------~~~--  129 (354)
                      +......+                                                                   .|+  
T Consensus       566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~  645 (799)
T KOG4162|consen  566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL  645 (799)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence            44333322                                                                   000  


Q ss_pred             ----cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchH
Q 038758          130 ----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISL  201 (354)
Q Consensus       130 ----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~  201 (354)
                          ...|......+.+.++.++|...+.+...   .....|......+...|.+++|.+.|....    -+.|+ ....
T Consensus       646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al----~ldP~hv~s~  721 (799)
T KOG4162|consen  646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL----ALDPDHVPSM  721 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH----hcCCCCcHHH
Confidence                11223344556666666666655554443   233445555556667777888888777665    34454 3456


Q ss_pred             HHHHHHhhhhcCccccch--hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          202 SGVLAACAQVKGVKLGKA--IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       202 ~~ll~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                      +++-..+.+.|+...+..  ++..+.+.+                     +.+...|-.+-..+-+.|+.+.|-+.|...
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~d---------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLD---------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            666777777787776666  777766665                     457788999999999999999999999887


Q ss_pred             HHc
Q 038758          280 IVA  282 (354)
Q Consensus       280 ~~~  282 (354)
                      .+.
T Consensus       781 ~qL  783 (799)
T KOG4162|consen  781 LQL  783 (799)
T ss_pred             Hhh
Confidence            653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0011  Score=54.07  Aligned_cols=246  Identities=10%  Similarity=0.055  Sum_probs=127.5

Q ss_pred             CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHH
Q 038758           60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF  139 (354)
Q Consensus        60 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~  139 (354)
                      |+.....-+.+++..+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..++++....         
T Consensus         5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---------   74 (459)
T KOG4340|consen    5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---------   74 (459)
T ss_pred             cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------
Confidence            334444456677777777777777777777665553 3356666667777777777777776666651111         


Q ss_pred             HHhcCchhHHHHHhccCCCCChhhhHH-HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH--hhhhcCccc
Q 038758          140 YAKCRYLKVSHCKFSKIKQKDLVSWNA-MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA--CAQVKGVKL  216 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~  216 (354)
                                         |...-|.. -...+.+.+.+.+|+++...|.  ..   |+...-..-+.+  ....+|+..
T Consensus        75 -------------------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~--D~---~~L~~~~lqLqaAIkYse~Dl~g  130 (459)
T KOG4340|consen   75 -------------------PELEQYRLYQAQSLYKACIYADALRVAFLLL--DN---PALHSRVLQLQAAIKYSEGDLPG  130 (459)
T ss_pred             -------------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhc--CC---HHHHHHHHHHHHHHhcccccCcc
Confidence                               11111111 1122334444455555554443  11   111111111111  123344444


Q ss_pred             cchhhhHhhhhcccccc--------ccchhHHHHHHhcccCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758          217 GKAIHGYVLRHHIHLST--------ACGFVICSCSVFNQLST----RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV  284 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  284 (354)
                      ++.+.++....+-....        +.|+.++|.+-|+....    .....||.-+..| +.|+.+.|++...++.+.|+
T Consensus       131 ~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  131 SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI  209 (459)
T ss_pred             hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence            44444444321111110        55555555555554432    2456777766555 56889999999999999887


Q ss_pred             CCCHhhHHHHHHHhhccCcccCccc------c-------chhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CCcccH
Q 038758          285 KPNTVTIVSVLPACLKLAALPQGLG------T-------GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-----KNLVSW  346 (354)
Q Consensus       285 ~p~~~t~~~li~~~~~~~~~~~~~~------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~  346 (354)
                      +--+..         .-|...+++.      |       =+..+|.-.-.+.+.|+++.|.+-+-+|+-     .|++|.
T Consensus       210 r~HPEl---------gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL  280 (459)
T KOG4340|consen  210 RQHPEL---------GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL  280 (459)
T ss_pred             hcCCcc---------CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence            532211         0111111100      0       012233333445788999999999998874     566666


Q ss_pred             HHh
Q 038758          347 NVM  349 (354)
Q Consensus       347 ~~l  349 (354)
                      ..+
T Consensus       281 HN~  283 (459)
T KOG4340|consen  281 HNQ  283 (459)
T ss_pred             hHH
Confidence            544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.83  E-value=0.00017  Score=53.31  Aligned_cols=91  Identities=7%  Similarity=-0.110  Sum_probs=66.9

Q ss_pred             HHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758          136 LIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK  212 (354)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~  212 (354)
                      +...+...|++++|.+.|+...+   .+...|..+...+.+.|++++|...++...  .. .+.+...+..+-..+...|
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~-~p~~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA--AL-DPDDPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CCCChHHHHHHHHHHHHcC
Confidence            34444455555555555554432   356778888899999999999999999886  33 2445666777778899999


Q ss_pred             CccccchhhhHhhhhcc
Q 038758          213 GVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~  229 (354)
                      +.+.|...++...+...
T Consensus       100 ~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552       100 EPESALKALDLAIEICG  116 (135)
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999988765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.82  E-value=0.0039  Score=55.05  Aligned_cols=139  Identities=12%  Similarity=0.161  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC-Ccch
Q 038758          177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVV  255 (354)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~  255 (354)
                      .+.....+++... ...+.|+ -+|...++...+...++.|+.+|....+.+.                    .+ ++..
T Consensus       347 ~~~~~~~~~~ll~-~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r--------------------~~hhVfV  404 (656)
T KOG1914|consen  347 EKKVHEIYNKLLK-IEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKR--------------------TRHHVFV  404 (656)
T ss_pred             hhhhHHHHHHHHh-hhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccC--------------------CcchhhH
Confidence            5667777777762 3344443 4577788888888888999999988888776                    33 5666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH-HHHHHHhhccCcccCc-----------ccc--chhHHHHHHHH
Q 038758          256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI-VSVLPACLKLAALPQG-----------LGT--GSFVWNALIDM  321 (354)
Q Consensus       256 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~~~~~~~-----------~~~--~~~~~~~li~~  321 (354)
                      ++++|.-||. ++.+-|.++|+-=.+.  -+|...| ...+.-+...++-..+           +.|  ...+|..+++-
T Consensus       405 a~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y  481 (656)
T KOG1914|consen  405 AAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY  481 (656)
T ss_pred             HHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence            6777766664 5566677777553322  1232222 2334444444443332           122  34678888888


Q ss_pred             HHhcCChhHHHHHhhcCCC
Q 038758          322 YGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       322 ~~~~g~~~~A~~~~~~m~~  340 (354)
                      -..-|+...+.++-+++..
T Consensus       482 ES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  482 ESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHhcccHHHHHHHHHHHHH
Confidence            8888888888877766543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.82  E-value=0.00016  Score=62.83  Aligned_cols=122  Identities=15%  Similarity=0.160  Sum_probs=94.6

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV  214 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~  214 (354)
                      .|+..+...++++.|..+|+++.+.++...-.+...+...++-.+|.+++++..  . ..+-+......-.+.+.+.++.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL--~-~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEAL--K-ENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHhcCCH
Confidence            455666677889999999999988776677778888888888889999998885  2 2223444455555567788888


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      +.|..+.++..+..                     +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       251 ~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            88888887777763                     2355699999999999999999999988875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.82  E-value=0.002  Score=60.77  Aligned_cols=130  Identities=4%  Similarity=-0.047  Sum_probs=77.1

Q ss_pred             cCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHH
Q 038758           96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAML  168 (354)
Q Consensus        96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li  168 (354)
                      ...++..+..|..+..+.|+.++|+.+++..    +.+......+...+.+.+++++|....++...  |+ ....+.+.
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            3445666666666666777777777776666    33444555566666666777777666666654  32 23344455


Q ss_pred             HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       169 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      .++.+.|++++|..+|++..  . ..+-+..++..+-.++-+.|+.++|...|+...+..
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~--~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLS--R-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHH--h-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            56666677777777776665  3 111224555566666666666666666666555543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.023  Score=54.28  Aligned_cols=83  Identities=13%  Similarity=0.158  Sum_probs=59.8

Q ss_pred             CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-----------ccCCCceehhhHHHHHHh
Q 038758           44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-----------KFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~  112 (354)
                      -.++.+++.++.|...+++.|..+...+..-|...=-.+...++|+..+..           ++.-|+.+.-..|.+-++
T Consensus       657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k  736 (1666)
T KOG0985|consen  657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK  736 (1666)
T ss_pred             cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence            455666777777777777777777766666666655566666666666542           245677778888999999


Q ss_pred             cCChhHHHHHHHhh
Q 038758          113 CGRMEITSGLFEEM  126 (354)
Q Consensus       113 ~g~~~~a~~~~~~~  126 (354)
                      .|++.+++++.++-
T Consensus       737 t~QikEvERicres  750 (1666)
T KOG0985|consen  737 TGQIKEVERICRES  750 (1666)
T ss_pred             hccHHHHHHHHhcc
Confidence            99999999888775

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.80  E-value=0.0002  Score=62.65  Aligned_cols=111  Identities=10%  Similarity=0.035  Sum_probs=74.7

Q ss_pred             CceehhhHHHHHHhcCChhHHHHHHHhhcc-------ccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHH
Q 038758           99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQ-------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAM  167 (354)
Q Consensus        99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l  167 (354)
                      +......+++.+....+++.+..++.++..       ...+..+++..|.+.|..+++..++..=.+    ||..++|.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            333444444444444445555554444411       122333555555555555555555544333    899999999


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758          168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV  211 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~  211 (354)
                      |..+.+.|++..|.++..+|.  ..+...+..|+...+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~--lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMM--LQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHH--HhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999998  888888889999888888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.80  E-value=0.009  Score=53.95  Aligned_cols=89  Identities=10%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             CCCcchHH--HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh-hHHHHHHHhhccCcccCc----------cccchhHHH
Q 038758          250 TRDVVVWN--SIISAFVRSGQVVDALDLLRDVIVANVKPNTV-TIVSVLPACLKLAALPQG----------LGTGSFVWN  316 (354)
Q Consensus       250 ~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~~----------~~~~~~~~~  316 (354)
                      +|....|.  .++..|-+.|+++.|+...+...++  .|+.. -|..-.+.+...|+++.+          -.+|..+-.
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs  443 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS  443 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence            34444444  4567788899999999999988854  67654 344445677778887776          344544444


Q ss_pred             HHHHHHHhcCChhHHHHHhhcCCC
Q 038758          317 ALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       317 ~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      --.+...++.+.++|.++.....+
T Consensus       444 KcAKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  444 KCAKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             HHHHHHHHccccHHHHHHHHHhhh
Confidence            556667788888888888877665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.80  E-value=0.00045  Score=51.80  Aligned_cols=92  Identities=11%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRP  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~  105 (354)
                      .|..++..+ ..++...+...++.+.+..  |+.    ...-.+-..+...|++++|...|+...+....|+  ....-.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            344555554 3677777777777776653  222    1122233556667777777777777776542222  112333


Q ss_pred             HHHHHHhcCChhHHHHHHHhh
Q 038758          106 LLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~  126 (354)
                      |...+...|++++|...++..
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~  111 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI  111 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc
Confidence            455566666666666665543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.003  Score=50.74  Aligned_cols=233  Identities=13%  Similarity=0.071  Sum_probs=138.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      ++-+.-.|++..++..-......  +-+...-.-+-++|...|.+.....-   ++... .|.......+-......++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence            34455567777766665554432  12333344455666677766643322   22222 23333333333333334444


Q ss_pred             hHHHHHH-Hhh-ccc---c-chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          117 EITSGLF-EEM-DQD---F-LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       117 ~~a~~~~-~~~-~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      ++-..-. +.+ .+.   . .....-...|+..|++++|++.............  =+..+.+..+.+-|.+.++.|+  
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq--  164 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQ--  164 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--
Confidence            3333332 333 111   1 1112233568899999999999998543333333  3555678889999999999997  


Q ss_pred             hcCCCCCcchHHHHHHHhhhh----cCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758          191 QTDMQPNTISLSGVLAACAQV----KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS  266 (354)
Q Consensus       191 ~~~~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  266 (354)
                      .-   -+..|.+.+..++.+.    +..+.|.-+|+++.+.-                     .|+..+.|-...++...
T Consensus       165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---------------------~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---------------------PPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---------------------CCChHHHccHHHHHHHh
Confidence            21   3456777777776643    23555556665555432                     56777788888888999


Q ss_pred             CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcc
Q 038758          267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL  304 (354)
Q Consensus       267 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~  304 (354)
                      |++++|..+++...+.. .-++.|...+|-+-...|..
T Consensus       221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence            99999999999998764 33556666666666666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.77  E-value=0.005  Score=55.51  Aligned_cols=112  Identities=16%  Similarity=0.036  Sum_probs=57.1

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      .|+.++|.+....-...+ .-+..+|+.+.-.+....++++|.++|....+.+ +-|...+.-+--.=++.|+++.....
T Consensus        54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            366666666655554433 2244456665555555666666666666666554 44455555444444444555544443


Q ss_pred             HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                      ..++    +.....|..+.-++.-.|+...|..+.+..
T Consensus       132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef  169 (700)
T KOG1156|consen  132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF  169 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333    222334444444444555555555554433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.75  E-value=0.00038  Score=63.25  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=144.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+|-.|...|+-.+|..+..+-.++  +||...|..+.+.....--+++|.++.+..-..       .-..+.....
T Consensus       426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~  496 (777)
T KOG1128|consen  426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL  496 (777)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence            8999999999999999999999988873  789999999988887777788888877765432       1112222233


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ..++++++.+.|+.-    +....+|-.+.-+..+.++++.|.+.|..-..  || ...||.+-.+|.+.++..+|...+
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l  576 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL  576 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence            478888888888764    44566777788888899999999999877664  54 567999999999999999999999


Q ss_pred             HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      .+..  +.+ .-+...+...+....+.|.+++|.+.+.++.....
T Consensus       577 ~EAl--Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  577 KEAL--KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHh--hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            9987  666 55566666777777888999999888888776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.70  E-value=0.0014  Score=61.66  Aligned_cols=133  Identities=8%  Similarity=-0.051  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .+-.|-....+.|.+++|..+++...+.  .|+.. ....+...+.+.+++++|....+...+.. +-+......+..++
T Consensus        88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l  164 (694)
T PRK15179         88 FQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSW  164 (694)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence            5555666666666666666666666654  34433 34455556666666666666666666553 33444555666666


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHH
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAM  167 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l  167 (354)
                      .+.|++++|.++|++.    +.+..++..+...+-..|+.++|...|++...   +.+..|+..
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            6666666666666666    12244555566666666666666666665542   344444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.70  E-value=0.0033  Score=54.79  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVC-PKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITS  120 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~  120 (354)
                      .|++++|+..+..+...  .|+...| ......+.+.++.++|.+.++.+...  .|+ ....-.+..+|.+.|++.+|.
T Consensus       319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         319 AGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence            34555555555554433  2333322 22333444555555555555554443  222 333334444555555555555


Q ss_pred             HHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758          121 GLFEEM----DQDFLVNNSLIDFYAKCRYLKVS  149 (354)
Q Consensus       121 ~~~~~~----~~~~~~~~~li~~~~~~~~~~~a  149 (354)
                      +++++.    +.+...|..|..+|...|+..++
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            555444    33444555555555555544433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.70  E-value=0.00014  Score=56.51  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             hHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC----------------ChhhHHHHHHH
Q 038758           32 NWTSMMGMYN-----VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK----------------DYRVGKDVYDY   90 (354)
Q Consensus        32 ~y~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~~~~~   90 (354)
                      +|..++..|.     +.|..+=....++.|.+-|+.-|..+|+.||+.+=+..                +-+-|.+++++
T Consensus        49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q  128 (228)
T PF06239_consen   49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ  128 (228)
T ss_pred             HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence            6666666666     44888889999999999999999999999999875422                34568999999


Q ss_pred             HHHhccCCCceehhhHHHHHHhcCCh
Q 038758           91 MISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        91 m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      |...|+-||..++..|++.+++.+..
T Consensus       129 ME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  129 MENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             HHHcCCCCcHHHHHHHHHHhccccHH
Confidence            99999999999999999999887754

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.68  E-value=0.00036  Score=47.37  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      |..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            4556677788899999999999987753 2233556677777888899999999998887764 4445677778888888


Q ss_pred             cCChhHHHHHHHhh
Q 038758          113 CGRMEITSGLFEEM  126 (354)
Q Consensus       113 ~g~~~~a~~~~~~~  126 (354)
                      .|+.+.|...+.+.
T Consensus        81 ~~~~~~a~~~~~~~   94 (100)
T cd00189          81 LGKYEEALEAYEKA   94 (100)
T ss_pred             HHhHHHHHHHHHHH
Confidence            88888888777653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.65  E-value=0.0013  Score=49.29  Aligned_cols=118  Identities=11%  Similarity=0.051  Sum_probs=81.1

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHHHHHHHhhc---ccc----chhhHH
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEITSGLFEEMD---QDF----LVNNSL  136 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~----~~~~~l  136 (354)
                      .|..++..+ ..++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+...   ++.    ...-.|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            355555555 4778888888888888763 333   2233345577888899999999999882   222    123346


Q ss_pred             HHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          137 IDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      ...+...|++++|...++....+  ....+......+.+.|++++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            67778888888888888776542  234455666778888888888888875

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.61  E-value=0.00074  Score=52.68  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=81.7

Q ss_pred             HHHhccC--CCCChhhhHHHHHHHHhC-----CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758          150 HCKFSKI--KQKDLVSWNAMLAGYALG-----GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       150 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                      ...|+..  ...|-.+|..++..|.+.     |..+=....++.|.  +-|+.-|..+|+.||+.+=+. .+-       
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg-~fv-------  103 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKG-KFV-------  103 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCC-Ccc-------
Confidence            3445554  347888898899888754     66777788889998  899999999999999887642 211       


Q ss_pred             HhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC
Q 038758          223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA  302 (354)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~  302 (354)
                                                  |.. .+-++...|  -.+.+-|++++++|...|+.||..|+..|++.+++.+
T Consensus       104 ----------------------------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  104 ----------------------------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             ----------------------------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                                        111 111111111  2345678999999999999999999999999988877


Q ss_pred             cc
Q 038758          303 AL  304 (354)
Q Consensus       303 ~~  304 (354)
                      ..
T Consensus       153 ~p  154 (228)
T PF06239_consen  153 HP  154 (228)
T ss_pred             HH
Confidence            53

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.037  Score=49.68  Aligned_cols=89  Identities=12%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCC---------------------------cCCcccHHHHHHH---HhccCChhhHHHH
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGV---------------------------RPDHFVCPKVYKA---CSELKDYRVGKDV   87 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll~~---~~~~~~~~~a~~~   87 (354)
                      ..+.+.|++++|+++|+++.+++.                           .....+|..+...   +...|++.+|+++
T Consensus       118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el  197 (652)
T KOG2376|consen  118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL  197 (652)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence            456788999999999999855432                           1113355555543   4478899999999


Q ss_pred             HHHHHHhccC-------------CCc-eehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           88 YDYMISIKFE-------------GNA-CVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        88 ~~~m~~~~~~-------------~~~-~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ++...+.+..             -.. ..--.|.-++...|+.++|.+++..+
T Consensus       198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~  250 (652)
T KOG2376|consen  198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI  250 (652)
T ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            9988433210             011 12234555677889999999988887

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.59  E-value=0.041  Score=47.88  Aligned_cols=78  Identities=10%  Similarity=0.010  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHcCcCCCHhh----HHHHHH--HhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHH
Q 038758          270 VDALDLLRDVIVANVKPNTVT----IVSVLP--ACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKI  334 (354)
Q Consensus       270 ~~a~~~~~~m~~~g~~p~~~t----~~~li~--~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~  334 (354)
                      .+-..+-+-+.+.|+.|-...    -+.|-.  -+...|++.++         +.|++.+|.-+.-.+....++++|..+
T Consensus       438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333344444455666654332    222222  23445666654         899999999999999999999999999


Q ss_pred             hhcCCCCCcccHHH
Q 038758          335 FVLMPHKNLVSWNV  348 (354)
Q Consensus       335 ~~~m~~~~~~~~~~  348 (354)
                      +..++ ||..+|++
T Consensus       518 l~~LP-~n~~~~ds  530 (549)
T PF07079_consen  518 LQKLP-PNERMRDS  530 (549)
T ss_pred             HHhCC-CchhhHHH
Confidence            99998 46666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.59  E-value=0.0013  Score=50.63  Aligned_cols=90  Identities=10%  Similarity=0.051  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC--CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP--DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      .|..+...+...|++++|...|++.......|  ...++..+...+...|++++|.+.++...+.. +....++..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            56666677777788888888888876553222  12356677777778888888888887777542 3333445555555


Q ss_pred             HH-------hcCChhHHHHH
Q 038758          110 FI-------KCGRMEITSGL  122 (354)
Q Consensus       110 ~~-------~~g~~~~a~~~  122 (354)
                      +.       ..|+++.|...
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~  135 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAW  135 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHH
Confidence            55       45555554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.53  E-value=0.001  Score=55.89  Aligned_cols=145  Identities=18%  Similarity=0.172  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHH-HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA-CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      +|-.+|+...+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            57777888888888888888888887543 2233333333332 23345666788888887765 466667777777777


Q ss_pred             HhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC-C-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-K-DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .+.|+.+.|..+|++.                          ...+.. . ....|...+.-=.+.|+.+.+.++.+.+.
T Consensus        81 ~~~~d~~~aR~lfer~--------------------------i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   81 IKLNDINNARALFERA--------------------------ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HHTT-HHHHHHHHHHH--------------------------CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHH--------------------------HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7778887777777764                          111111 1 23467777777778888888888888776


Q ss_pred             hhhcCCCCCcchHHHHHHHh
Q 038758          189 MIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       189 ~~~~~~~p~~~t~~~ll~~~  208 (354)
                        .  ..|+...+..+++-|
T Consensus       135 --~--~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen  135 --E--LFPEDNSLELFSDRY  150 (280)
T ss_dssp             --H--HTTTS-HHHHHHCCT
T ss_pred             --H--HhhhhhHHHHHHHHh
Confidence              2  344444454444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.51  E-value=0.00097  Score=55.98  Aligned_cols=82  Identities=12%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a  119 (354)
                      .++.+.|..+|+...+. ...+...|..-+..+...++.+.|..+|+..... +.++   ...|...+..=.+.|+.+.+
T Consensus        49 ~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v  126 (280)
T PF05843_consen   49 NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESV  126 (280)
T ss_dssp             CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred             CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence            57777799999998876 4567777888889999999999999999998865 2322   24788888888888999988


Q ss_pred             HHHHHhh
Q 038758          120 SGLFEEM  126 (354)
Q Consensus       120 ~~~~~~~  126 (354)
                      .++.+++
T Consensus       127 ~~v~~R~  133 (280)
T PF05843_consen  127 RKVEKRA  133 (280)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888776

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.51  E-value=0.079  Score=49.15  Aligned_cols=77  Identities=14%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc-----------ccc-chhHHHHHHHHHHhcCCh
Q 038758          262 AFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG-----------LGT-GSFVWNALIDMYGRCGAI  328 (354)
Q Consensus       262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~-----------~~~-~~~~~~~li~~~~~~g~~  328 (354)
                      .+...|+.++|.+.|.....  +.|+. .....+-..+.+.|+...+           +.| +...|..+...+-+.|+.
T Consensus       693 ~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence            34455667777777766653  34554 3556677777788865554           344 678899999999999999


Q ss_pred             hHHHHHhhcCCC
Q 038758          329 QKSRKIFVLMPH  340 (354)
Q Consensus       329 ~~A~~~~~~m~~  340 (354)
                      +.|-+.|....+
T Consensus       771 ~~Aaecf~aa~q  782 (799)
T KOG4162|consen  771 KQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHHHh
Confidence            999999886554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.51  E-value=0.014  Score=58.03  Aligned_cols=233  Identities=9%  Similarity=0.046  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-----CCcccHHHHHHHHhccCChhhHHHHHHHHHHh----ccCC---C
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-----PDHFVCPKVYKACSELKDYRVGKDVYDYMISI----KFEG---N   99 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~---~   99 (354)
                      ..+.+-..+...|++++|...+++.....-.     +....+..+...+...|+++.|...+++....    +...   .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3455666677888999888888887643111     11123445556677888898888888776643    2111   1


Q ss_pred             ceehhhHHHHHHhcCChhHHHHHHHhh-------cc--ccchhhHHHHHHHhcCchhHHHHHhccCCC----CC-hhhh-
Q 038758          100 ACVKRPLLDLFIKCGRMEITSGLFEEM-------DQ--DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KD-LVSW-  164 (354)
Q Consensus       100 ~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~-  164 (354)
                      ...+..+...+...|++++|...+++.       .+  ....+..+...+...|+.++|...+++...    .. ...+ 
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            122344555667778998888887775       11  122333455567778888888877766532    11 1111 


Q ss_pred             ----HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc---hHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758          165 ----NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI---SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF  237 (354)
Q Consensus       165 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (354)
                          ...+..+...|+.+.|.+++....  .........   ....+..++...|+.++|...+.........       
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-------  723 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAP--KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS-------  723 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcC--CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Confidence                112234455788888888877664  221111110   1234455566778888887777766554210       


Q ss_pred             hHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          238 VICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       238 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                                ...+  ...+...+-.++.+.|+.++|...+.+..+..
T Consensus       724 ----------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        724 ----------LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             ----------hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                      0011  12345556677889999999999999987653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.50  E-value=0.0001  Score=49.43  Aligned_cols=81  Identities=14%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             cCChhHHHHHHHHHHhCCCc-CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      .|+++.|+.+++++.+.... |+...+..+...+.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46777777777777765431 2333444466777777777777777776 3332 2223344455667777777777777


Q ss_pred             HHHh
Q 038758          122 LFEE  125 (354)
Q Consensus       122 ~~~~  125 (354)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.47  E-value=0.023  Score=53.40  Aligned_cols=217  Identities=10%  Similarity=0.107  Sum_probs=135.3

Q ss_pred             HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      ..++++.+|+.-...+..+  -||.. |..++.++.  +.|+.++|..+++.....+ .-|..|...+-.+|...|+.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence            3568899999998888765  35544 666666654  8889999998888877555 3378889999999999999999


Q ss_pred             HHHHHHhh---ccccchhhHHHHHHHhcCchh----HHHHHhccCCCCChhhhHHHHHHHHhCC-Ch---------hHHH
Q 038758          119 TSGLFEEM---DQDFLVNNSLIDFYAKCRYLK----VSHCKFSKIKQKDLVSWNAMLAGYALGG-FR---------EEVT  181 (354)
Q Consensus       119 a~~~~~~~---~~~~~~~~~li~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a~  181 (354)
                      |..+|++.   .|+......+..+|.+.+++.    .|.+++...++.--.-|+ +++...+.. ..         .-|.
T Consensus        96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence            99999998   555666677888888887765    456667766543333443 344333321 11         2344


Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH-hhhhccccccccchhHHHHHHhcccCCCCcchHHHHH
Q 038758          182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII  260 (354)
Q Consensus       182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li  260 (354)
                      +.++.+.+ +.|---+..-...-+..+...|..++|.+++.. ..+.                    ....+...-+--+
T Consensus       175 ~m~~~~l~-~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--------------------l~~~~~~l~~~~~  233 (932)
T KOG2053|consen  175 KMVQKLLE-KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--------------------LTSANLYLENKKL  233 (932)
T ss_pred             HHHHHHhc-cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--------------------ccccchHHHHHHH
Confidence            45555542 222111111111222223344555555555421 1111                    1133344444567


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC
Q 038758          261 SAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       261 ~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                      ..+...+++.+..++-.++.+.|
T Consensus       234 dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  234 DLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHhcChHHHHHHHHHHHHhC
Confidence            77788888888888888888765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0043  Score=57.62  Aligned_cols=276  Identities=11%  Similarity=0.061  Sum_probs=165.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-cc--------CCCceehhhHHHH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KF--------EGNACVKRPLLDL  109 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~--------~~~~~~~~~li~~  109 (354)
                      .|.--|+.+.|.+-++..+.      ...|..+.+.|.+.++++-|.-++..|... |.        .|+ .+-....-.
T Consensus       737 fyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            35667999999988877764      346999999999999999999888888743 21        121 222233334


Q ss_pred             HHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      -...|.+++|+.+|.+.+    -|..|=+.|-..|.+++|.++-+.-..- =..||..-...+-..+|.+.|++.|+...
T Consensus       810 AieLgMlEeA~~lYr~ck----R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCK----RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHH----HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence            567799999999998863    3556667788889999999988764431 23456666666667788888888887552


Q ss_pred             hhhcCC-------------------CCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcc
Q 038758          189 MIQTDM-------------------QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQ  247 (354)
Q Consensus       189 ~~~~~~-------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~  247 (354)
                        .+..                   ..|...|..--..+-..|+.+.|..+|......-.....  -.|+.++|-++-++
T Consensus       886 --~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e  963 (1416)
T KOG3617|consen  886 --VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE  963 (1416)
T ss_pred             --ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence              1110                   112233333333344445555555555444332221111  34555555555444


Q ss_pred             cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----cccchhHHHHHHHHHH
Q 038758          248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----LGTGSFVWNALIDMYG  323 (354)
Q Consensus       248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----~~~~~~~~~~li~~~~  323 (354)
                        ..|....-.+.+.|-..|++.+|...|-+..         +|...|+.|-..+.-++-    ......-.-...+.|-
T Consensus       964 --sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen  964 --SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred             --cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence              2344455566777778888888888877664         444555544333322221    1111111334455566


Q ss_pred             hcC-ChhHHHHHhhcC
Q 038758          324 RCG-AIQKSRKIFVLM  338 (354)
Q Consensus       324 ~~g-~~~~A~~~~~~m  338 (354)
                      .+| ..++|..++.+.
T Consensus      1033 e~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1033 ELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred             HcchhhhHHHHHHHhh
Confidence            666 777787777643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.40  E-value=0.0026  Score=45.56  Aligned_cols=94  Identities=10%  Similarity=-0.005  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCCceehhhHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGNACVKRPLLD  108 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~  108 (354)
                      +-.+...+.+.|++++|.+.|+.+.+....  .....+..+...+.+.|+++.|.+.++.+.+...  +.....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            445666778889999999999888765311  1123566677888888999999999998876531  112445677778


Q ss_pred             HHHhcCChhHHHHHHHhh
Q 038758          109 LFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       109 ~~~~~g~~~~a~~~~~~~  126 (354)
                      ++.+.|+.++|.+.++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHhCChHHHHHHHHHH
Confidence            888888888888888776

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.39  E-value=0.0022  Score=49.60  Aligned_cols=88  Identities=8%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      .|..+-..+...|++++|...|++..+.+..+.  ...+..+...+.+.|+++.|...++...+.. +-+...+..+..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            455566666777777777777777765432222  2356666666777777777777777766542 2234445555556


Q ss_pred             HHhcCChhHHH
Q 038758          110 FIKCGRMEITS  120 (354)
Q Consensus       110 ~~~~g~~~~a~  120 (354)
                      +...|+...+.
T Consensus       116 ~~~~g~~~~a~  126 (172)
T PRK02603        116 YHKRGEKAEEA  126 (172)
T ss_pred             HHHcCChHhHh
Confidence            65555544433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.33  E-value=0.0062  Score=43.55  Aligned_cols=101  Identities=8%  Similarity=-0.107  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhhcC--CCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                      ++..+...+.+.|++++|.+.|+.+.  ...  -......+..+..++.+.|+++.|...++.+.......         
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------   72 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFL--KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------   72 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence            34556666777788888888887775  221  11112345556667777777777877777776653210         


Q ss_pred             HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                               ......+..+...+.+.|+.++|...++++.+..
T Consensus        73 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 ---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             ---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence                     1123456667778888899999999999888763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.31  E-value=0.001  Score=44.99  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=52.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      +..+...+...|+++.|.++++...+.. +.+...+..+..++...|+++.|.+.|++..                    
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------------   61 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL--------------------   61 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            3444555566677777777777666543 2233445555556666666666665555430                    


Q ss_pred             HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                             .+...+..++..+...+...|++++|...+....
T Consensus        62 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          62 -------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             -------hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                   0111233455566666667777777777776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.26  E-value=0.0038  Score=52.56  Aligned_cols=131  Identities=13%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL  106 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  106 (354)
                      .|+..-..|...|++++|.+.|.+.-....+.+.     ..|......+ +..+++.|.+.++...              
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~--------------  101 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI--------------  101 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH--------------
Confidence            6777777888888888888888776443211111     1122222222 3335555555555544              


Q ss_pred             HHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc-CchhHHHHHhccCCC-------C--ChhhhHHHHHHHHhCCC
Q 038758          107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQ-------K--DLVSWNAMLAGYALGGF  176 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~  176 (354)
                       ..|...|++..|-+.+.+          +...|-.. |++++|.+.|++...       +  -...+..+...+.+.|+
T Consensus       102 -~~y~~~G~~~~aA~~~~~----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen  102 -EIYREAGRFSQAAKCLKE----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             -HHHHHCT-HHHHHHHHHH----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred             -HHHHhcCcHHHHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence             334444444444433322          33344444 445544444443321       1  12234455556666677


Q ss_pred             hhHHHHHHHHHH
Q 038758          177 REEVTNLLDEME  188 (354)
Q Consensus       177 ~~~a~~~~~~m~  188 (354)
                      +++|.++|++..
T Consensus       171 y~~A~~~~e~~~  182 (282)
T PF14938_consen  171 YEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777776664

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.24  E-value=0.00057  Score=45.76  Aligned_cols=47  Identities=15%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             CChhhHHHHHHHHHHhccC-CCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           79 KDYRVGKDVYDYMISIKFE-GNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        79 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      |+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4556666666666554321 1233333355555555555555555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.016  Score=46.39  Aligned_cols=181  Identities=13%  Similarity=0.130  Sum_probs=121.6

Q ss_pred             hcCChhHHHHHHHHHHhC---C-CcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           42 VLGYYEEIVNLFYLMIDK---G-VRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      ...+.++.++++.++...   | ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+-..|.+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence            346788999998888654   4 5566655 6667777788999999999999988653 33333333333446677999


Q ss_pred             hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758          117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEM  189 (354)
Q Consensus       117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  189 (354)
                      ++|.++++.+    +-+..++-.-+...-..|.--+|++-+....+   .|...|.-+-..|...|++++|.-.++++. 
T Consensus       103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-  181 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-  181 (289)
T ss_pred             hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence            9999999998    33444554445555555666667666554443   588999999999999999999999999997 


Q ss_pred             hhcCCCCCcchHH-HHHHHhhhhc---CccccchhhhHhhhh
Q 038758          190 IQTDMQPNTISLS-GVLAACAQVK---GVKLGKAIHGYVLRH  227 (354)
Q Consensus       190 ~~~~~~p~~~t~~-~ll~~~~~~~---~~~~a~~~~~~~~~~  227 (354)
                         -+.|....|. .+-..+.-.|   +...+.+.+.+..+.
T Consensus       182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence               3456555443 2333332222   344455555554443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.02  Score=46.07  Aligned_cols=172  Identities=15%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             hhhhHhhhhh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 038758           22 LGSQLLEVFC---NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG   98 (354)
Q Consensus        22 ~~~~li~~~~---~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~   98 (354)
                      -|+.|++.+.   .-..+++.+-.....+..++.+++=..       ...+.++..+...+.+.-..+.+....+...+.
T Consensus       138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~  210 (366)
T KOG2796|consen  138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ  210 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence            3567777776   223334444444444666666665432       245666666777777877888888887766566


Q ss_pred             CceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhhHHH-----HHHHhcCchhHHHHHhccCCCC---ChhhhH
Q 038758           99 NACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLI-----DFYAKCRYLKVSHCKFSKIKQK---DLVSWN  165 (354)
Q Consensus        99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~  165 (354)
                      ++.....|++.-.+.||.+.|...|++.     ..+..+.+.++     ..|.-..++.+|...|.++...   |+..-|
T Consensus       211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N  290 (366)
T KOG2796|consen  211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN  290 (366)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence            7777788888888888888888888866     23344444433     3455667788888888777753   333334


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758          166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV  204 (354)
Q Consensus       166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l  204 (354)
                      .-.-+..-.|+..+|.+.++.|.  .  ..|...+-+++
T Consensus       291 nKALcllYlg~l~DAiK~~e~~~--~--~~P~~~l~es~  325 (366)
T KOG2796|consen  291 NKALCLLYLGKLKDALKQLEAMV--Q--QDPRHYLHESV  325 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--c--cCCccchhhhH
Confidence            33333333588889999998887  3  34444444433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.14  E-value=0.073  Score=47.43  Aligned_cols=127  Identities=13%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             hhhHHHHHHHhcCchhHHHHHhccCCC----C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcch-HHHHH
Q 038758          132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ----K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS-LSGVL  205 (354)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t-~~~ll  205 (354)
                      +|-.+++.-.+..-++.|..+|.+.++    + ++..++++|.-+| .++.+-|.++|+-=.+ .   -+|... -...+
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLk-k---f~d~p~yv~~Yl  442 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLK-K---FGDSPEYVLKYL  442 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHH-h---cCCChHHHHHHH
Confidence            444444544455555555555555443    2 5666777777666 4667778888765431 2   223222 23445


Q ss_pred             HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ..+...++-..++.+|+.+...+..+                  ......|..+|.-=.+-|+...+.++-+++..
T Consensus       443 dfL~~lNdd~N~R~LFEr~l~s~l~~------------------~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  443 DFLSHLNDDNNARALFERVLTSVLSA------------------DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHhCcchhHHHHHHHHHhccCCh------------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66677777777888887777764411                  22346677777777777777777777766654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.044  Score=44.22  Aligned_cols=138  Identities=11%  Similarity=0.058  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH----
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL----  107 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li----  107 (354)
                      .-+++++.+.-.|.+.-.++.+++..+...+.+......|.+.-.+.||.+.|...|+...+..-+.|..+.+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            6677888888889999999999999998777778888888888899999999999999888765566665555544    


Q ss_pred             -HHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHH
Q 038758          108 -DLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLA  169 (354)
Q Consensus       108 -~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~  169 (354)
                       ..|.-.+++..|.+.|.++    +.+...-|.-.-+..-.|+..+|.+..+.|.+  |...+-+.++-
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~  327 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLF  327 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHH
Confidence             4566678888999988877    33444445444444556899999999999986  54444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.09  E-value=0.15  Score=43.54  Aligned_cols=111  Identities=14%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 038758          198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR  277 (354)
Q Consensus       198 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  277 (354)
                      ..+.+..+.-+...|....|.++-....                        .|+-..|-.-+.+++..++|++-..+-.
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------------------------v~dkrfw~lki~aLa~~~~w~eL~~fa~  232 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK------------------------VPDKRFWWLKIKALAENKDWDELEKFAK  232 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcC------------------------CcHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4456666666777777666666543322                        5677777777888888888776665432


Q ss_pred             HHHHcCcCCCHhhHHHHHHHhhccCcccCc--cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          278 DVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       278 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      .      +-++.-|...+.+|.+.|...++  +-|. ..+..-+..|.++|++.+|.+.--+..
T Consensus       233 s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  233 S------KKSPIGYEPFVEACLKYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             C------CCCCCChHHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            1      22346777777777777776666  2222 233667777888888888776654444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.08  E-value=0.025  Score=48.26  Aligned_cols=107  Identities=10%  Similarity=0.022  Sum_probs=75.2

Q ss_pred             ceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChh
Q 038758          100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE  178 (354)
Q Consensus       100 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~  178 (354)
                      ..+.+..|.-+...|+...|.++-.+. .|+..-|-..+.+++..++|++-+++...  ..++.-|..++.+|.+.|...
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHH
Confidence            345566677777788888888887777 56677778888888888888888876654  345677888888888888888


Q ss_pred             HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758          179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI  220 (354)
Q Consensus       179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  220 (354)
                      +|..++..+.            +..-+..|.+.|++.+|.+.
T Consensus       255 eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  255 EASKYIPKIP------------DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHH
Confidence            8877776543            23444555555555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.08  E-value=0.002  Score=40.99  Aligned_cols=62  Identities=13%  Similarity=0.288  Sum_probs=49.3

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C
Q 038758          264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K  341 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~  341 (354)
                      .+.|++++|+++|+++.+.  .|+..                       .++..+..+|.+.|++++|.++++++..  |
T Consensus         2 l~~~~~~~A~~~~~~~l~~--~p~~~-----------------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--NPDNP-----------------------EARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--TTTSH-----------------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHH--CCCCH-----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            5689999999999999865  45432                       2366899999999999999999999987  7


Q ss_pred             CcccHHHhh
Q 038758          342 NLVSWNVMI  350 (354)
Q Consensus       342 ~~~~~~~li  350 (354)
                      +...|..++
T Consensus        57 ~~~~~~~l~   65 (68)
T PF14559_consen   57 DNPEYQQLL   65 (68)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            766666654

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.06  E-value=0.11  Score=47.34  Aligned_cols=225  Identities=8%  Similarity=0.006  Sum_probs=112.0

Q ss_pred             HHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHH
Q 038758            8 HAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV   87 (354)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~   87 (354)
                      ++++.++|-+|+..........-.-|.--.+.|.++|.-.+|+++|..|+-          --..+-+...|+.++-..+
T Consensus       623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRM----------FD~aQE~~~~g~~~eKKmL  692 (1081)
T KOG1538|consen  623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRM----------FDYAQEFLGSGDPKEKKML  692 (1081)
T ss_pred             HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHH----------HHHHHHHhhcCChHHHHHH
Confidence            346777888888774333322211344444444455555555555544431          1122334444444444433


Q ss_pred             HHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH
Q 038758           88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM  167 (354)
Q Consensus        88 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  167 (354)
                      .+.-.+.  ..++.-=.+-...+...|+.++|..+                 ....|-.+-+.++-.++...+..+...+
T Consensus       693 ~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i-----------------~~d~gW~d~lidI~rkld~~ere~l~~~  753 (1081)
T KOG1538|consen  693 IRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI-----------------CGDHGWVDMLIDIARKLDKAEREPLLLC  753 (1081)
T ss_pred             HHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh-----------------hhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence            3322211  11111112334455667777777654                 3345555666666666655555555555


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758          168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ  247 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  247 (354)
                      ..-+.+...+..|.++|..|-  .         ...+++.....+++.+|..+-+...+.-.+.....+++-.       
T Consensus       754 a~ylk~l~~~gLAaeIF~k~g--D---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA-------  815 (1081)
T KOG1538|consen  754 ATYLKKLDSPGLAAEIFLKMG--D---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA-------  815 (1081)
T ss_pred             HHHHhhccccchHHHHHHHhc--c---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh-------
Confidence            555556666777777777774  1         2344555566666666666655444332111000000000       


Q ss_pred             cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                          ...-|.--=.+|.+.|+-.+|.++++++....
T Consensus       816 ----E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  816 ----ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             ----hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence                00112223356778888888888888876543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.3  Score=45.47  Aligned_cols=178  Identities=11%  Similarity=-0.007  Sum_probs=101.8

Q ss_pred             HHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHH--------HhCCCcCCcccHHH-----HH
Q 038758            6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLM--------IDKGVRPDHFVCPK-----VY   72 (354)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m--------~~~~~~p~~~~~~~-----ll   72 (354)
                      +|.+.+..++-+-.+.....|+++-    ++-.++.+..++++-..+-++.        ..-|++.+..-|..     ++
T Consensus       369 aV~~CI~aA~~ef~pe~QK~LL~AA----sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi  444 (829)
T KOG2280|consen  369 AVDDCIEAACDEFQPEEQKSLLRAA----SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVI  444 (829)
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHH----hhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhh
Confidence            4445555556566666666777663    2333444555666555554443        23366666665554     45


Q ss_pred             HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC---ChhHHHHHHHhhc---cccchhhHHHHHHHhcCch
Q 038758           73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG---RMEITSGLFEEMD---QDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~  146 (354)
                      +-+...+.+..|.++-..+...-.. +..+|.....-+.+..   +-+.+..+-+++.   -....|..+..-.-..|+.
T Consensus       445 ~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~  523 (829)
T KOG2280|consen  445 DRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRF  523 (829)
T ss_pred             HHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcH
Confidence            6666777777777776665421111 1445566666666552   3333334444442   2455667777777778888


Q ss_pred             hHHHHHhccCCC--------CChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          147 KVSHCKFSKIKQ--------KDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       147 ~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      +-|..+++.=+.        .+..-+...+.-+.+.|+.+....++-.+.
T Consensus       524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk  573 (829)
T KOG2280|consen  524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK  573 (829)
T ss_pred             HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            888888765442        122335556666677777777777666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.99  E-value=0.0079  Score=52.45  Aligned_cols=87  Identities=13%  Similarity=0.008  Sum_probs=72.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ......|++++|++.|++..+.. +-+...|..+..++...|+++.|...++...+.. +.+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            44567899999999999998864 3355567777888889999999999999998875 556778888889999999999


Q ss_pred             HHHHHHHhh
Q 038758          118 ITSGLFEEM  126 (354)
Q Consensus       118 ~a~~~~~~~  126 (354)
                      +|...|++.
T Consensus        88 eA~~~~~~a   96 (356)
T PLN03088         88 TAKAALEKG   96 (356)
T ss_pred             HHHHHHHHH
Confidence            999999887

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.086  Score=42.38  Aligned_cols=154  Identities=9%  Similarity=0.026  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHH-HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY-KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .|-.++-+....|+.+.|...++.+...-  |...-...+= -.+-..|++++|.++++.+.+.+ +.|.+++---+...
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil  130 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence            66677777788899999999999998763  4443222221 22446789999999999999876 66777787777777


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC--CCChhhh-HHHHHHHHh---CCChhHH
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSW-NAMLAGYAL---GGFREEV  180 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~---~~~~~~a  180 (354)
                      -..|+.-+|.+-+...    ..|...|.-+-..|...|++++|.-.++++.  +|....| ..+...+.-   ..+.+.+
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7778777776555444    8899999999999999999999999999886  4644443 333333322   3356778


Q ss_pred             HHHHHHHH
Q 038758          181 TNLLDEME  188 (354)
Q Consensus       181 ~~~~~~m~  188 (354)
                      .+.|....
T Consensus       211 rkyy~~al  218 (289)
T KOG3060|consen  211 RKYYERAL  218 (289)
T ss_pred             HHHHHHHH
Confidence            88888776

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.96  E-value=0.059  Score=51.50  Aligned_cols=167  Identities=9%  Similarity=0.008  Sum_probs=113.2

Q ss_pred             hhhhhhHhhhhh-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHH
Q 038758           20 AFLGSQLLEVFC-------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI   92 (354)
Q Consensus        20 ~~~~~~li~~~~-------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~   92 (354)
                      .-.++++|++.-       .|..|-..|+..-+...|...|....+.+ .-+......+.+.|++..+.+.|..+.-..-
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            334445555443       78888888888888888999998887764 3456667888888999999998888732221


Q ss_pred             HhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh-hhH
Q 038758           93 SIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV-SWN  165 (354)
Q Consensus        93 ~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~  165 (354)
                      +.. +.-  ...|....-.|.+.++...+..-|+.-    +.|...|..+..+|.++|++..|.++|.+....++. +|.
T Consensus       554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence            111 111  112222344566777777777777765    667788889999999999999999999877753332 333


Q ss_pred             HHHH--HHHhCCChhHHHHHHHHHH
Q 038758          166 AMLA--GYALGGFREEVTNLLDEME  188 (354)
Q Consensus       166 ~li~--~~~~~~~~~~a~~~~~~m~  188 (354)
                      ..-.  .-+..|++.+|+..+....
T Consensus       633 ~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  633 RFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2222  2355688888888877663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.91  E-value=0.012  Score=43.93  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=52.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      .+...|++++|..+|+.....+ +-+..-|-.|-..+-..|++++|.+.|....... +-++..+-.+..++...|+.+.
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence            3445677777777777666543 2233334455555556667777777777666655 4556666666667777777777


Q ss_pred             HHHHHHh
Q 038758          119 TSGLFEE  125 (354)
Q Consensus       119 a~~~~~~  125 (354)
                      |.+.|+.
T Consensus       122 A~~aF~~  128 (157)
T PRK15363        122 AIKALKA  128 (157)
T ss_pred             HHHHHHH
Confidence            7666664

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.90  E-value=0.0049  Score=45.89  Aligned_cols=56  Identities=5%  Similarity=-0.082  Sum_probs=35.5

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .+-..+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|...
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33344556777777777777776654 444555666666666777777777666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.89  E-value=0.093  Score=44.14  Aligned_cols=220  Identities=10%  Similarity=0.021  Sum_probs=116.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcC--CcccH------------HHHHHHHhccCChhhHHHHHHHHHHhccCCCceehh
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRP--DHFVC------------PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR  104 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  104 (354)
                      .+.++|.+++|..=|+...++....  +...+            ...+..+...|+...|+.....+.+.. +-+...|.
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~  193 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ  193 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence            4567788888888888877664211  11111            122334456677777777777777653 44666666


Q ss_pred             hHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhh----hHHH-------
Q 038758          105 PLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVS----WNAM-------  167 (354)
Q Consensus       105 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~l-------  167 (354)
                      .-..+|...|++..|..=+...    ..++..+--+-..+-..|+.+.++...++..+  ||...    |..+       
T Consensus       194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence            6677777777777776555444    33444555555566666777776666665543  32211    1111       


Q ss_pred             --HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH---HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758          168 --LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS---GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC  242 (354)
Q Consensus       168 --i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~  242 (354)
                        +....+.++|.++++-.+...  +........+|+   .+-.++..-+.+.+|.+.-.++++..              
T Consensus       274 es~e~~ie~~~~t~cle~ge~vl--k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------------  337 (504)
T KOG0624|consen  274 ESAEQAIEEKHWTECLEAGEKVL--KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------------  337 (504)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHH--hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------------
Confidence              122334455555555554443  222111122222   22222223333334433333333221              


Q ss_pred             HHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                             +.|+.++.--..+|.-...++.|+.=|+...+.
T Consensus       338 -------~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  338 -------PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             -------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence                   234666666667777777788888888777654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.88  E-value=0.015  Score=49.07  Aligned_cols=222  Identities=12%  Similarity=0.087  Sum_probs=107.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCC-----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGN-----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK  142 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~  142 (354)
                      |......|...+++++|.+.|....+.....+     ...|.....+|.+. ++++|.+.+++          .+..|..
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~----------A~~~y~~  106 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK----------AIEIYRE  106 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH----------HHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH----------HHHHHHh
Confidence            44445555556666666666665543221110     11222222233222 44444443332          3444444


Q ss_pred             cCchhHHHHHhccCCCCChhhhHHHHHHHHhC-CChhHHHHHHHHHHhh--hcCCCCC--cchHHHHHHHhhhhcCcccc
Q 038758          143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLLDEMEMI--QTDMQPN--TISLSGVLAACAQVKGVKLG  217 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~--~~~~~p~--~~t~~~ll~~~~~~~~~~~a  217 (354)
                      .|++..|-+           .+..+...|-.. |++++|.+.|++..+.  ..| .+.  ...+..+...+.+.|++++|
T Consensus       107 ~G~~~~aA~-----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen  107 AGRFSQAAK-----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             CT-HHHHHH-----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             cCcHHHHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            444443333           344556666666 7888888888876410  122 111  23455666677788888888


Q ss_pred             chhhhHhhhhccccccccchhHHHHHHhcccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CcCCCHhhHHHH
Q 038758          218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV-VWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSV  294 (354)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l  294 (354)
                      ..+|+++.........               ...+.. .|-..+-.+...|+...|.+.+++....  ++..+..     
T Consensus       175 ~~~~e~~~~~~l~~~l---------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E-----  234 (282)
T PF14938_consen  175 IEIYEEVAKKCLENNL---------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE-----  234 (282)
T ss_dssp             HHHHHHHHHTCCCHCT---------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH-----
T ss_pred             HHHHHHHHHHhhcccc---------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-----
Confidence            8888777654331000               001111 2223344556679999999999998743  2222221     


Q ss_pred             HHHhhccCcccCccccchhHHHHHHHHHHh--cCChhHHHHHhhcCCCCCcccHHHh
Q 038758          295 LPACLKLAALPQGLGTGSFVWNALIDMYGR--CGAIQKSRKIFVLMPHKNLVSWNVM  349 (354)
Q Consensus       295 i~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~l  349 (354)
                                       -.....||+++-.  ...+++|..-|+.+.+.|.+--..|
T Consensus       235 -----------------~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l  274 (282)
T PF14938_consen  235 -----------------YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML  274 (282)
T ss_dssp             -----------------HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence                             1224445555532  3445566666666666554444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.85  E-value=0.011  Score=51.46  Aligned_cols=29  Identities=10%  Similarity=-0.055  Sum_probs=15.7

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          253 VVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ...|..+..+|...|++++|+..|++..+
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~   98 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.071  Score=47.79  Aligned_cols=187  Identities=15%  Similarity=0.090  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-----C---Cceeh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-----G---NACVK  103 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~---~~~~~  103 (354)
                      .|--|-.....+++-..|+..+++..+.. +-|....-.|.-.|...|.-..|.+.++...+...+     +   +...-
T Consensus       321 AW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~  399 (579)
T KOG1125|consen  321 AWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE  399 (579)
T ss_pred             HHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence            78888888889999999999999988764 224445666666788888888888888888665411     0   11111


Q ss_pred             hhHHHHHHhcCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhC
Q 038758          104 RPLLDLFIKCGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALG  174 (354)
Q Consensus       104 ~~li~~~~~~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~  174 (354)
                      ..  ..+.....+....++|-++      ..|..++..|.-.|--.|++++|...|+...+  | |-..||-|-..++..
T Consensus       400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~  477 (579)
T KOG1125|consen  400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG  477 (579)
T ss_pred             CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence            10  2333444555666677666      36888899999999999999999999998764  4 667899999999999


Q ss_pred             CChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhh
Q 038758          175 GFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVL  225 (354)
Q Consensus       175 ~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~  225 (354)
                      .+.++|+.-|++..    .++|+ +...-.+--+|...|.+++|...|-..+
T Consensus       478 ~~s~EAIsAY~rAL----qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  478 NRSEEAISAYNRAL----QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             cccHHHHHHHHHHH----hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999999987    45666 2333334446788888888776654443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.83  E-value=0.0031  Score=40.05  Aligned_cols=46  Identities=17%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      |++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|.+++++
T Consensus         5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~   50 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER   50 (68)
T ss_dssp             THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444443332 22333333344444444444444444433

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.77  E-value=0.027  Score=43.48  Aligned_cols=61  Identities=13%  Similarity=-0.017  Sum_probs=25.4

Q ss_pred             hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      +..+...+...|++++|...|++..  .....+.  ...+..+...+.+.|++++|...+....+
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444444455555555554443  2111111  12333444444444444444444444333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.76  E-value=0.076  Score=43.54  Aligned_cols=58  Identities=17%  Similarity=0.083  Sum_probs=39.2

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHh
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV  224 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  224 (354)
                      +..-|.+.|.+..|..=++.+.+.=.+.+........+..++...|..+++......+
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3445778888888888888886322344444556667778888888888777765443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.75  E-value=0.052  Score=44.50  Aligned_cols=57  Identities=11%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758          259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                      +..-|.+.|.+..|..-++.+.+.  -|+...                    .......++++|.+.|..++|.++...
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~--------------------~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRD--YPDTQA--------------------TRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHH--CCCCch--------------------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            345688899999999999999864  333322                    233356778888888888888876654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.72  E-value=0.024  Score=43.62  Aligned_cols=96  Identities=9%  Similarity=-0.064  Sum_probs=56.7

Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC--CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP--NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV  238 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  238 (354)
                      ...|..+...+...|++++|...|+...  .....|  ...++..+-..+...|+.++|...+....+..          
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al--~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~----------  102 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAM--RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN----------  102 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence            3445666666677777777777777775  222111  12356666666777777777777776666542          


Q ss_pred             HHHHHHhcccCCCCcchHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 038758          239 ICSCSVFNQLSTRDVVVWNSIISAFV-------RSGQVVDALDLLRDV  279 (354)
Q Consensus       239 ~~a~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~~m  279 (354)
                                 +....+++.+...+.       ..|+++.|...+++-
T Consensus       103 -----------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        103 -----------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             -----------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence                       222344455555555       777877665555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.67  E-value=0.032  Score=51.10  Aligned_cols=137  Identities=10%  Similarity=0.016  Sum_probs=82.3

Q ss_pred             CcCCcccHHHHHHHHhcc-----CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC--------ChhHHHHHHHhh-
Q 038758           61 VRPDHFVCPKVYKACSEL-----KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG--------RMEITSGLFEEM-  126 (354)
Q Consensus        61 ~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~-  126 (354)
                      .+.|...|...+++....     ++.+.|.++|++..+.. +-+...+..+..++....        +...+.+..++. 
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            355667788888775432     23667888888888763 223344444433333221        122333333331 


Q ss_pred             -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758          127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI  199 (354)
Q Consensus       127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~  199 (354)
                           ..+...|.++.-.....|++++|...+++...  |+...|..+...+...|+.++|.+.|++..    .+.|...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~----~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF----NLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCc
Confidence                 22334566665555567888888888877653  666677777788888888888888887765    3445555


Q ss_pred             hHH
Q 038758          200 SLS  202 (354)
Q Consensus       200 t~~  202 (354)
                      ||.
T Consensus       488 t~~  490 (517)
T PRK10153        488 TLY  490 (517)
T ss_pred             hHH
Confidence            543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.65  E-value=0.021  Score=41.30  Aligned_cols=54  Identities=15%  Similarity=0.102  Sum_probs=44.3

Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHHHhhccCc
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAA  303 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~  303 (354)
                      .|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++=+....+
T Consensus        49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999998764 777777887777775544433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.63  E-value=0.34  Score=42.49  Aligned_cols=133  Identities=9%  Similarity=-0.006  Sum_probs=88.7

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------  233 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------  233 (354)
                      ..|...|++-.+..-.+.|..+|-+.+  +.| +.++...+++++..++ .|+...|..+|+.-+..-.+.+.       
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~r--k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLR--KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHh--ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence            346667777777777888888998888  777 6788888888888766 46777777777665554333333       


Q ss_pred             ---ccchhHHHHHHhcccCC---CC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhh
Q 038758          234 ---ACGFVICSCSVFNQLST---RD--VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL  299 (354)
Q Consensus       234 ---~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  299 (354)
                         ..++-+.|..+|+...+   .+  ...|-.+|.-=.+-|+...|..+=+.|.+.  -|-..+......-|.
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~  546 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence               66777777777775431   12  356777787777788887777776666543  444444444444443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=96.58  E-value=0.12  Score=39.25  Aligned_cols=134  Identities=7%  Similarity=-0.050  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhcc
Q 038758           49 IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ  128 (354)
Q Consensus        49 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  128 (354)
                      ..+.++.+.+.+++|+...+..+++.+.+.|++....    .+...++.+|.......+-.+.  +....+.++=-+|-.
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk   86 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK   86 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence            3466677778899999999999999999999876444    4455666666655443332222  233444444444433


Q ss_pred             ccc-hhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          129 DFL-VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       129 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ... .+..++..+...|++-+|.++.++....+......++.+..+.+|...-..+|+-.+
T Consensus        87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333 667777888888888888888877655555556677788777777766666666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.51  E-value=0.075  Score=47.56  Aligned_cols=157  Identities=12%  Similarity=0.084  Sum_probs=103.0

Q ss_pred             HHhccCChhhHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHH
Q 038758           74 ACSELKDYRVGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC  151 (354)
Q Consensus        74 ~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  151 (354)
                      ...-.++++.+.+..+.   ..+.|  ...-.+.+++.+.+.|..+.|+++..+       -..-.....+.|+++.|.+
T Consensus       270 ~av~~~d~~~v~~~i~~---~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~~rFeLAl~lg~L~~A~~  339 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAA---SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-------PDHRFELALQLGNLDIALE  339 (443)
T ss_dssp             HHHHTT-HHH-----HH---HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHcCChhhhhhhhhh---hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------hHHHhHHHHhcCCHHHHHH
Confidence            34455677766555531   11111  133467788888888888888876443       2345566778888888888


Q ss_pred             HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccc
Q 038758          152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL  231 (354)
Q Consensus       152 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (354)
                      +.++..  +...|..|.....+.|+++-|.+.|....           -|..++-.|.-.|+.+...++.+.....|-  
T Consensus       340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--  404 (443)
T PF04053_consen  340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD--  404 (443)
T ss_dssp             HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred             HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence            888775  66789999999999999999999998775           366676677777887777777666665553  


Q ss_pred             ccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                                              +|....++...|+.++..+++.+-
T Consensus       405 ------------------------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 ------------------------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ------------------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             ------------------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence                                    666777777788888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.51  E-value=0.019  Score=41.10  Aligned_cols=86  Identities=15%  Similarity=0.111  Sum_probs=50.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC----ceehhhHHHHHH
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPLLDLFI  111 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~  111 (354)
                      .++-..|+.++|..+|++....|+...  ...+..+-+.+...|++++|..+++......  |+    ......+..++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence            345566777777777777777765443  2235556666777777777777777766542  32    111122233455


Q ss_pred             hcCChhHHHHHHHh
Q 038758          112 KCGRMEITSGLFEE  125 (354)
Q Consensus       112 ~~g~~~~a~~~~~~  125 (354)
                      ..|+.++|.+.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            66666666665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.48  E-value=0.053  Score=38.83  Aligned_cols=103  Identities=16%  Similarity=0.039  Sum_probs=78.8

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh---ccc----cchhhHHHHHHH
Q 038758           71 VYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM---DQD----FLVNNSLIDFYA  141 (354)
Q Consensus        71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~----~~~~~~li~~~~  141 (354)
                      +-.++-..|+.++|..+|+.....|....  ...+-.+.+.+...|++++|..++++.   .|+    ......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34466788999999999999999886554  346667888999999999999999988   233    222233445777


Q ss_pred             hcCchhHHHHHhccCCCCChhhhHHHHHHHHh
Q 038758          142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL  173 (354)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  173 (354)
                      ..|+.++|.+.+-....++...|.--|..|..
T Consensus        87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~  118 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAETLPRYRRAIRFYAD  118 (120)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999876666666788888877764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.47  E-value=0.15  Score=37.83  Aligned_cols=125  Identities=11%  Similarity=0.085  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      ..++..+...+........++.+...+ ..+...++.++..|++.+. +...+.++   .   ..+.......++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~---~---~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLD---N---KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHH---h---ccccCCHHHHHHHHHHc
Confidence            356666777777777888888777766 3566667777777776532 22223322   1   12333344466666666


Q ss_pred             CChhHHHHHHHhhccccchhhHHHHHHHhc-CchhHHHHHhccCCCCChhhhHHHHHHHH
Q 038758          114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYA  172 (354)
Q Consensus       114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~  172 (354)
                      +.++++.-++.++.....    .+..+... ++++.|.+.+.+-  .+...|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~~~~~----Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDGNFKD----AIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhcCHHH----HHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence            666666666665532222    22222222 5566666655542  23445555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.47  E-value=0.033  Score=46.11  Aligned_cols=93  Identities=6%  Similarity=0.014  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhc--cCCCceehhh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIK--FEGNACVKRP  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~  105 (354)
                      .|+..+..+.+.|++++|...|+.+.+..  |+.    ..+-.+...+...|+++.|...|+.+.+.-  .+.....+-.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            56776666677799999999999988763  443    356778888889999999999999988652  1122334444


Q ss_pred             HHHHHHhcCChhHHHHHHHhh
Q 038758          106 LLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~  126 (354)
                      +..++...|+.++|.++|+++
T Consensus       223 lg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            566777888888888887765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.44  E-value=0.014  Score=36.66  Aligned_cols=57  Identities=11%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      -..+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...|+...+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356677888888888888888765 235556777777778888888888888887765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.38  E-value=0.011  Score=44.20  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCcee
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACV  102 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~  102 (354)
                      ....++..+...|++++|..+.+.+.... +.+...|..+|.++...|+...|.++|+.+.+     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            55666666777888888888888887764 45666788888888888888888888887753     477776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.35  E-value=0.19  Score=38.53  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=65.2

Q ss_pred             CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---cc---ccchhh
Q 038758           61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQ---DFLVNN  134 (354)
Q Consensus        61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~---~~~~~~  134 (354)
                      ..|+...-..|..++.+.|+..+|...|++...--+--|....-.+.++....+++..|...++++   +|   +..+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            456776677777777888888888888877765444556666667777777778888888777776   22   222333


Q ss_pred             HHHHHHHhcCchhHHHHHhccCC
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      .+...|...|..++|+.-|+...
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~  187 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAI  187 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHH
Confidence            44556666777777777776654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.33  E-value=0.045  Score=44.64  Aligned_cols=114  Identities=15%  Similarity=0.127  Sum_probs=79.9

Q ss_pred             HHHHhccCC--CCChhhhHHHHHHHHhC-----CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhh
Q 038758          149 SHCKFSKIK--QKDLVSWNAMLAGYALG-----GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH  221 (354)
Q Consensus       149 a~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~  221 (354)
                      .++.|....  +.|-.+|-+.+..|...     +..+=....++.|+  +-|+.-|..+|+.+|+.+-+..-        
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkf--------  122 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKF--------  122 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCccccc--------
Confidence            344565555  46777888888877654     55677777788998  99999999999999987654321        


Q ss_pred             hHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                                                  .|. ..+-...-.|-++  -+=++.++++|...|+.||..+-..|++++.+.
T Consensus       123 ----------------------------iP~-nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~  171 (406)
T KOG3941|consen  123 ----------------------------IPQ-NVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW  171 (406)
T ss_pred             ----------------------------ccH-HHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence                                        111 1122222223322  334789999999999999999988999988887


Q ss_pred             Cc
Q 038758          302 AA  303 (354)
Q Consensus       302 ~~  303 (354)
                      +-
T Consensus       172 ~~  173 (406)
T KOG3941|consen  172 NF  173 (406)
T ss_pred             cc
Confidence            74

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.31  E-value=0.0075  Score=37.90  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=40.7

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ...+...|++++|.+.|+...+.. +-+...+..+..++...|++++|...|++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445677888888888888888765 446677778888888888888888887765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.29  E-value=0.0083  Score=38.21  Aligned_cols=57  Identities=19%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC-ChhHHHHHHH
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEITSGLFE  124 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~  124 (354)
                      .|..+...+...|++++|...|+...+.. +-+...|..+..++.+.| ++++|.+.++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~   62 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFE   62 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            34444444445555555555555555443 333444444555555555 4555544443

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=0.28  Score=45.61  Aligned_cols=62  Identities=15%  Similarity=0.023  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CcCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG----VRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS   93 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~   93 (354)
                      +|..+-+.--..|+++-|..+++.=...+    +-.+..-+...+.-+...|+.+...+++-++.+
T Consensus       509 Sy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~  574 (829)
T KOG2280|consen  509 SYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN  574 (829)
T ss_pred             eHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            56666666667788888887776543332    112444456666677777777777777666654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.26  E-value=0.013  Score=43.93  Aligned_cols=67  Identities=13%  Similarity=0.152  Sum_probs=43.7

Q ss_pred             HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 038758          203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-  281 (354)
Q Consensus       203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-  281 (354)
                      .++..+...|+++.+..+...+....                     +-|...|..+|.+|...|+..+|.+.|+++.+ 
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d---------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD---------------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            33344445566666666655555543                     45788999999999999999999999988853 


Q ss_pred             ----cCcCCCHhh
Q 038758          282 ----ANVKPNTVT  290 (354)
Q Consensus       282 ----~g~~p~~~t  290 (354)
                          .|+.|+..+
T Consensus       126 l~~elg~~Ps~~~  138 (146)
T PF03704_consen  126 LREELGIEPSPET  138 (146)
T ss_dssp             HHHHHS----HHH
T ss_pred             HHHHhCcCcCHHH
Confidence                499999876

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.21  E-value=0.13  Score=47.39  Aligned_cols=75  Identities=8%  Similarity=0.015  Sum_probs=40.9

Q ss_pred             HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758          106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD  185 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  185 (354)
                      .+.++.+..++++.+.+-+.++.+....-.+..++.+.|.-++|.+.|-+...|.     ..+..|...++|.+|.++-+
T Consensus       828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444446666666667777777777777777665554442     22334444445555544443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.21  E-value=0.057  Score=39.06  Aligned_cols=100  Identities=7%  Similarity=-0.026  Sum_probs=69.5

Q ss_pred             ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc--cCCCCChhhhHHHHHHHHhCCCh
Q 038758          100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLVSWNAMLAGYALGGFR  177 (354)
Q Consensus       100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~~~~  177 (354)
                      ..++.++|.++++.|+++....+.+..      |+.=+.+-...+.       +.  .-..|+..+..+++.+|+..|++
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~------WgI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i   68 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSV------WGIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDI   68 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHh------cCCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccH
Confidence            456777888888888888888877765      0000000000000       11  11138899999999999999999


Q ss_pred             hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC
Q 038758          178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG  213 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~  213 (354)
                      ..|+++++.... .-+++.+..+|..+++-+....+
T Consensus        69 ~~al~~vd~fs~-~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   69 FSALKLVDFFSR-KYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999875 67788888999999987655544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.17  E-value=0.027  Score=46.31  Aligned_cols=85  Identities=16%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCC-CHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHH
Q 038758          264 VRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSR  332 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~  332 (354)
                      .+.+++.+|+..|.+.++.  .| |.+-|..=..+|++.|..+.|         +.| -..+|..|..+|...|++++|.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            3445555555555555532  33 223334444555555554444         222 2457999999999999999999


Q ss_pred             HHhhcCCC--CCcccHHHhh
Q 038758          333 KIFVLMPH--KNLVSWNVMI  350 (354)
Q Consensus       333 ~~~~~m~~--~~~~~~~~li  350 (354)
                      +.|++..+  |+-.+|..=|
T Consensus       170 ~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  170 EAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHHHhhhccCCCcHHHHHHH
Confidence            99999887  7777776543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.14  E-value=0.55  Score=44.70  Aligned_cols=128  Identities=11%  Similarity=0.106  Sum_probs=88.4

Q ss_pred             hccCChhhHHHHHHHHHHhccCCCceehhhHHHH--HHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758           76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL--FIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS  149 (354)
Q Consensus        76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a  149 (354)
                      ...+++..|.+-...+.+.  .|+.. |...+.+  +.+.|+.++|..+++..    ..|..+...+-.+|.+.+..++|
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            4567888888888887765  44443 3333333  46789999999998887    34677888899999999999999


Q ss_pred             HHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758          150 HCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA  209 (354)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~  209 (354)
                      ..+++...+  |+......+..+|++-+.+.+-.+.=-+|.   +.++-+.+.|=++++...
T Consensus        97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~Ly---K~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen   97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLY---KNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCcccchHHHHHHHHH
Confidence            999999876  565555667778888887765544444442   233334555555555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.13  E-value=0.026  Score=36.89  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR  332 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  332 (354)
                      .+|+.+-..|...|++++|+..|++..+.. ..++...  .                 ...++..+...|.+.|++++|.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~-----------------~a~~~~~lg~~~~~~g~~~~A~   66 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP--D-----------------TANTLNNLGECYYRLGDYEEAL   66 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH--H-----------------HHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH--H-----------------HHHHHHHHHHHHHHcCCHHHHH
Confidence            468888999999999999999999987641 1122111  0                 1345888999999999999999


Q ss_pred             HHhhcC
Q 038758          333 KIFVLM  338 (354)
Q Consensus       333 ~~~~~m  338 (354)
                      +.+++.
T Consensus        67 ~~~~~a   72 (78)
T PF13424_consen   67 EYYQKA   72 (78)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998763

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.04  E-value=0.042  Score=43.75  Aligned_cols=168  Identities=14%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      ..+...|++++|...|+.+......  -.....-.+..++.+.|+++.|...++.+.+.-..-...-+...+.+.+....
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            3456789999999999999876321  11223456677788899999999999998875211111122333333332211


Q ss_pred             h-------------hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHH
Q 038758          116 M-------------EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       116 ~-------------~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      .             ..|...|          ..++.-|=.+.-.++|...+..+...=...--.+..-|.+.|.+..|..
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~----------~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~  162 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEF----------EELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII  162 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHH----------HHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred             CccchhcccChHHHHHHHHHH----------HHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            1             1222222          2333333333334444444333322111111124566788888888888


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK  215 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~  215 (354)
                      -++.+.+.=.+..........++.++.+.|..+
T Consensus       163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            888886211222222334566677777777655

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.53  Score=42.09  Aligned_cols=237  Identities=9%  Similarity=0.006  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh------
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP------  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------  105 (354)
                      -+-.+.++.-+..+++.+.+-+.......  -+..-++..-.++...|.+..+...-+...+.|.. ...-|+.      
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~  302 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA  302 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence            45556677777788888888888777654  34444555666677878777777666665555421 1112222      


Q ss_pred             -HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChh-hhHHHHHHHHhCCChhHHH
Q 038758          106 -LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLV-SWNAMLAGYALGGFREEVT  181 (354)
Q Consensus       106 -li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~  181 (354)
                       +..+|.+.++++.+...|.+.-..-.+    -....+....+++.+..+...-  |... -...-.+.+.+.|++..|.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av  378 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV  378 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence             334566677888888877764100000    1223333445555555444332  3221 1222366788999999999


Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH
Q 038758          182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS  261 (354)
Q Consensus       182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~  261 (354)
                      +.|.++.  ... +-|...|...--+|.+.+.+..|..=-+...+..                     ++....|.-=..
T Consensus       379 ~~YteAI--kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~---------------------p~~~kgy~RKg~  434 (539)
T KOG0548|consen  379 KHYTEAI--KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD---------------------PNFIKAYLRKGA  434 (539)
T ss_pred             HHHHHHH--hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------------chHHHHHHHHHH
Confidence            9999997  444 5567889999999999998877766444433332                     122223332233


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                      ++....++++|++.|.+-.+.  .|+..-+..-+.-|...
T Consensus       435 al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence            344455788888888887755  47766666666655553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.96  E-value=0.71  Score=40.11  Aligned_cols=182  Identities=12%  Similarity=0.051  Sum_probs=96.9

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCCC-------ChhhhHHHHHHHHh---CCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQK-------DLVSWNAMLAGYAL---GGFREEVTNLLDEMEMIQTDMQPNTISLSGV  204 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l  204 (354)
                      .++-+|....+++...++.+.+..+       ....-....-++.+   .|+.++|++++..+.  ...-.++..||..+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l--~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL--ESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH--hccCCCChHHHHHH
Confidence            4444688888888888888888763       11111233445556   789999999999965  66667777788877


Q ss_pred             HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS--IISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      ...|-..-            .+.+..   .....++|+..|.+.-.-+...|+-  +...+...|...+...-.+++.  
T Consensus       224 GRIyKD~~------------~~s~~~---d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~--  286 (374)
T PF13281_consen  224 GRIYKDLF------------LESNFT---DRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIG--  286 (374)
T ss_pred             HHHHHHHH------------HHcCcc---chHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHH--
Confidence            76654220            000000   1122455555555443333233321  1112222332111111111111  


Q ss_pred             CcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCcccH
Q 038758          283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW  346 (354)
Q Consensus       283 g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  346 (354)
                            .+++.++   .+.|..+  -..+-..+.++.++..-.|+.++|.+..+.|.+.+...|
T Consensus       287 ------~~l~~ll---g~kg~~~--~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  287 ------VKLSSLL---GRKGSLE--KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ------HHHHHHH---Hhhcccc--ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence                  1111111   1222211  113444567888999999999999999999887444444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.91  E-value=0.0038  Score=46.61  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=46.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      +|+.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++       ..+..-...++..+.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence            345555666666666666666665544555566666666666666565555554       1112333455566666666


Q ss_pred             hhHHHHHHHhh
Q 038758          116 MEITSGLFEEM  126 (354)
Q Consensus       116 ~~~a~~~~~~~  126 (354)
                      ++++.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            66665554443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.91  E-value=0.047  Score=35.07  Aligned_cols=57  Identities=12%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK   95 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   95 (354)
                      ..|.+.+++++|.++++.+...+ +.+...+......+...|++++|.+.++...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            46778888888888888888764 3355566677777888888888888888888653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.84  E-value=0.06  Score=44.60  Aligned_cols=97  Identities=9%  Similarity=-0.041  Sum_probs=59.0

Q ss_pred             hhHHHHHHHhcCchhHHHHHhccCCC--CCh----hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758          133 NNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA  206 (354)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~  206 (354)
                      |...+..+.+.|++++|...|+.+.+  |+.    ..+-.+...|...|++++|...|+.+...-.+-......+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            44444444556778888877777763  443    355567777888888888888888875201111112223333444


Q ss_pred             HhhhhcCccccchhhhHhhhhcc
Q 038758          207 ACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      .+...|+.+.|...++.+.+...
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCc
Confidence            56677777888777777766543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.12  Score=42.79  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=79.4

Q ss_pred             CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh---cCccccchhhhHhhhhcccccccc
Q 038758          159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLRHHIHLSTAC  235 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~  235 (354)
                      .|...|-.|-..|...|+.+.|..-|....+ ..|-.|  ..+..+-.++...   ....++..+++++.+..       
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-------  223 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALR-LAGDNP--EILLGLAEALYYQAGQQMTAKARALLRQALALD-------  223 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCCCCH--HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------
Confidence            3778899999999999999999999998863 333333  3444444443332   24556777777777664       


Q ss_pred             chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758          236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP  296 (354)
Q Consensus       236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  296 (354)
                                    .-|+.+-..|-..+...|++.+|...|+.|.+..  |.......+|+
T Consensus       224 --------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         224 --------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             --------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence                          3466666777788999999999999999999763  44444444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.81  E-value=0.15  Score=46.89  Aligned_cols=120  Identities=9%  Similarity=0.034  Sum_probs=81.1

Q ss_pred             CChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhccC--------ChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhc
Q 038758           44 GYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSELK--------DYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~  113 (354)
                      ++.+.|.++|++..+.  .|+- ..|..+..++....        +...+.+..+..... ..+.+...|.++.-.....
T Consensus       356 ~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~  433 (517)
T PRK10153        356 KSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK  433 (517)
T ss_pred             HHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence            3477999999999986  4554 33444333332211        122333333332222 1234556787777777788


Q ss_pred             CChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhH
Q 038758          114 GRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWN  165 (354)
Q Consensus       114 g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  165 (354)
                      |++++|...+++.   .|+...|..+...+...|+.++|...+++...  |...+|.
T Consensus       434 g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        434 GKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence            9999999999998   66778889999999999999999999988764  5545553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.76  E-value=0.017  Score=37.84  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=13.6

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      .+++.+...+...|++++|++.+++.
T Consensus        47 ~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen   47 NTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34455555555555555555555543

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.68  E-value=0.077  Score=43.70  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=69.0

Q ss_pred             HHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          171 YALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       171 ~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      +.+.+++++|+..|.+..    .+.|+ .+-|..--.+|++.|..+.|.+=-+..+...                     
T Consensus        91 ~m~~~~Y~eAv~kY~~AI----~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---------------------  145 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAI----ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---------------------  145 (304)
T ss_pred             HHHhhhHHHHHHHHHHHH----hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------------
Confidence            556678888888888776    34443 4556666777887777766655443333322                     


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHh
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC  298 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  298 (354)
                      +....+|..|-.+|...|++++|++.|++.++  +.|+..+|-.=+...
T Consensus       146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            22356788888888888999999888888874  478888877655544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.67  E-value=0.032  Score=35.91  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ..+.+.++++.|.++++.+.+.+ +.+...+.....++.+.|++++|.+.|++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            45678888889999998888875 557777888888888888888888888775

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.62  E-value=0.2  Score=48.21  Aligned_cols=175  Identities=12%  Similarity=0.088  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      ...++..|-+.....+. =...|..|...|+..-+...|.+.|+...+.+ .-+..........|+...+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            55555555555443311 12347788888887778888888888877654 44566778888889999999998888443


Q ss_pred             hcc------ccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC
Q 038758          126 MDQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP  196 (354)
Q Consensus       126 ~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p  196 (354)
                      ...      ...-|-...-.|.+.++..+|...|+...+   .|...|..+..+|.++|++..|.++|....    -++|
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs----~LrP  627 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS----LLRP  627 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH----hcCc
Confidence            311      112222344456777888888888877664   366778889999999999999999998775    3455


Q ss_pred             CcchHHHHHHH--hhhhcCccccchhhhHhhhh
Q 038758          197 NTISLSGVLAA--CAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       197 ~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +. +|...-.+  -+..|..+++...++.+...
T Consensus       628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            43 33333222  35567777777777666543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.56  E-value=0.5  Score=34.07  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=74.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee---hhhHHHHHHhcCCh
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV---KRPLLDLFIKCGRM  116 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~  116 (354)
                      +...|..++..+++.+....   .+..-+|.+|--....-+-+.   +++-+...|-..|...   ...++.+|+..|..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~   85 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL   85 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Confidence            44568888888888887764   355567777755544444444   4444444454444432   23345555555543


Q ss_pred             hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC---CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758          117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD  193 (354)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  193 (354)
                      .+             .....++.+..+|.-+.-.++...+.   ++++...-.+..||.+.|+..++.+++.+.-  +.|
T Consensus        86 se-------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC--ekG  150 (161)
T PF09205_consen   86 SE-------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC--EKG  150 (161)
T ss_dssp             -H-------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HTT
T ss_pred             HH-------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH--Hhc
Confidence            33             23345566667777777777776654   3556666666777777777777777777776  666


Q ss_pred             CC
Q 038758          194 MQ  195 (354)
Q Consensus       194 ~~  195 (354)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            54

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.54  E-value=0.94  Score=41.72  Aligned_cols=255  Identities=12%  Similarity=0.102  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHH---------HHHHhCCCcCCcccHHHHHHHHhccCChhhH--HHHHHHHHHhccCCCc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLF---------YLMIDKGVRPDHFVCPKVYKACSELKDYRVG--KDVYDYMISIKFEGNA  100 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~m~~~~~~~~~  100 (354)
                      .+.+=+..|...|.+++|.++-         +.+-..  ..+.-.++..=.+|.+-++..-.  .--+++++++|-.|+.
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~  635 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND  635 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence            4445555667777777776542         111111  12334455555666666655432  2334455666655665


Q ss_pred             eehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--------------CChhhhHH
Q 038758          101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------------KDLVSWNA  166 (354)
Q Consensus       101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~  166 (354)
                      ..   +...++-.|.+.+|-++|.+-...    |..+.+|...+.++.|.++......              .|+.-=.+
T Consensus       636 iL---lA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka  708 (1081)
T KOG1538|consen  636 LL---LADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA  708 (1081)
T ss_pred             HH---HHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH
Confidence            43   345567777888888777764111    2233444444555555554433221              11111123


Q ss_pred             HHHHHHhCCChhHHHHHHH-----HHHhhhcCC---CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758          167 MLAGYALGGFREEVTNLLD-----EMEMIQTDM---QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV  238 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~-----~m~~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  238 (354)
                      ....+...|+.++|..+.-     +|.- +-+-   ..+..+...+-..+.+...+..|-++|..+-...          
T Consensus       709 AAEmLiSaGe~~KAi~i~~d~gW~d~li-dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k----------  777 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEICGDHGWVDMLI-DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK----------  777 (1081)
T ss_pred             HHHHhhcccchhhhhhhhhcccHHHHHH-HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH----------
Confidence            3344555677666655432     1110 1111   1223344444444555666666666665544322          


Q ss_pred             HHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHH
Q 038758          239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL  318 (354)
Q Consensus       239 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~l  318 (354)
                                         .++..+...+++.+|..+-++..+  +.||...  ..-+-++...           -|...
T Consensus       778 -------------------siVqlHve~~~W~eAFalAe~hPe--~~~dVy~--pyaqwLAE~D-----------rFeEA  823 (1081)
T KOG1538|consen  778 -------------------SLVQLHVETQRWDEAFALAEKHPE--FKDDVYM--PYAQWLAEND-----------RFEEA  823 (1081)
T ss_pred             -------------------HHhhheeecccchHhHhhhhhCcc--ccccccc--hHHHHhhhhh-----------hHHHH
Confidence                               345555666666666666655542  2343321  1111111111           14445


Q ss_pred             HHHHHhcCChhHHHHHhhcCCC
Q 038758          319 IDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      -.+|.+.|+..+|.++++.+..
T Consensus       824 qkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  824 QKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHHHhcchHHHHHHHHHhhh
Confidence            5677777777777777777654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.54  E-value=0.049  Score=34.53  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISI   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~   94 (354)
                      +|..+-..+...|++++|+..|++..+.+ +-+...|..+..++...| ++++|.+.++...+.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            57778888999999999999999999875 335667888888889999 799999999988764

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.51  E-value=0.06  Score=43.97  Aligned_cols=85  Identities=14%  Similarity=0.076  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC----------------ChhhHHHHHHH
Q 038758           32 NWTSMMGMYNV-----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK----------------DYRVGKDVYDY   90 (354)
Q Consensus        32 ~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~~~~~   90 (354)
                      +|-..+..|..     .+..+-....++.|.+-|+.-|..+|+.||..+-+..                +-+-+.+++++
T Consensus        69 sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeq  148 (406)
T KOG3941|consen   69 SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQ  148 (406)
T ss_pred             HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHH
Confidence            55566666653     4677888889999999999999999999998875433                22347899999


Q ss_pred             HHHhccCCCceehhhHHHHHHhcCCh
Q 038758           91 MISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        91 m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      |...|+-||..+-..|++++.+.|-.
T Consensus       149 ME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  149 MEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHcCCCCchHHHHHHHHHhcccccc
Confidence            99999999999999999999988764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.36  E-value=0.78  Score=33.91  Aligned_cols=127  Identities=10%  Similarity=0.090  Sum_probs=85.3

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~  146 (354)
                      ....++..+...+.......+++.+.+.+ ..+...++.++..|++.++ +...+.+.. ..+.......+..|.+.+.+
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-~~~~yd~~~~~~~c~~~~l~   85 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-KSNHYDIEKVGKLCEKAKLY   85 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-ccccCCHHHHHHHHHHcCcH
Confidence            35677788887888999999999999887 5778889999999998754 455555552 12334444577788888888


Q ss_pred             hHHHHHhccCCCCChhhhHHHHHHHHhC-CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758          147 KVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA  209 (354)
Q Consensus       147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~  209 (354)
                      +++.-++.++..     |...+..+.+. ++++.|.+...+-.        +...|..++..+.
T Consensus        86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--------~~~lw~~~~~~~l  136 (140)
T smart00299       86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--------NPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence            888888877643     22233333334 67777777666421        3445666665544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.31  E-value=1.7  Score=37.59  Aligned_cols=163  Identities=12%  Similarity=0.008  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcCCcccHHHHHHHH--hccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           32 NWTSMMGMYNVL--GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC--SELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        32 ~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      -|..|-.++.-.  |+-..|.+.-.+-.+. +.-|......|+.+-  .-.|+++.|.+-|+.|.... .........|.
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLy  161 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLY  161 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHH
Confidence            455554444433  4444454444443321 333444444444332  24566666666666665421 11111223333


Q ss_pred             HHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC--------------------------
Q 038758          108 DLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--------------------------  157 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------------------------  157 (354)
                      -.--+.|+.+.|..+-++.    +.-.-.+.+.+...|..|+++.|+++.+.-+                          
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            3334456666655555544    3333444556666666666666666654332                          


Q ss_pred             -----------------CCChhh-hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758          158 -----------------QKDLVS-WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT  198 (354)
Q Consensus       158 -----------------~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~  198 (354)
                                       .||..- --.-..++.+.|+..++-.+++.+-  +..-.|+.
T Consensus       242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW--K~ePHP~i  298 (531)
T COG3898         242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW--KAEPHPDI  298 (531)
T ss_pred             cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH--hcCCChHH
Confidence                             123222 1233467889999999999999998  66666653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.29  E-value=0.39  Score=43.65  Aligned_cols=125  Identities=12%  Similarity=-0.013  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CcCCc-----ccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDH-----FVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~  101 (354)
                      ....+++..+-.|+-+..++.+.+-.+.+ +.-..     -.|+..+..++.    ..+.+.|.++++.+.++  -|+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            66777778888899999999998876542 22111     234444444443    34677888888888865  56655


Q ss_pred             ehhh-HHHHHHhcCChhHHHHHHHhhccc--------cchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758          102 VKRP-LLDLFIKCGRMEITSGLFEEMDQD--------FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus       102 ~~~~-li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (354)
                      .|.- -.+.+...|++++|.+.|++....        ...+--+.-.+.-.+++++|.+.|..+.+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            5533 335566778999999888865211        11222344445556666666666666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.43  Score=39.58  Aligned_cols=93  Identities=9%  Similarity=0.069  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh---ccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS---ELKDYRVGKDVYDYMISIKFEGNACVKRPLLD  108 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  108 (354)
                      .|-.|-.+|...|+++.|..-|.+..+.. .+|...+..+..++.   ....-.++.++|+++.+.. +-|+.+...|..
T Consensus       158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~  235 (287)
T COG4235         158 GWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAF  235 (287)
T ss_pred             hHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence            55666666666666666666666655432 223333333333322   2223445556666655543 444445555555


Q ss_pred             HHHhcCChhHHHHHHHhh
Q 038758          109 LFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       109 ~~~~~g~~~~a~~~~~~~  126 (354)
                      .+...|++.+|...|+.|
T Consensus       236 ~afe~g~~~~A~~~Wq~l  253 (287)
T COG4235         236 AAFEQGDYAEAAAAWQML  253 (287)
T ss_pred             HHHHcccHHHHHHHHHHH
Confidence            555566666665555555

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.21  E-value=0.31  Score=38.77  Aligned_cols=167  Identities=13%  Similarity=0.031  Sum_probs=78.0

Q ss_pred             HHHHhcCchhHHHHHhccCCC--CCh----hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQ--KDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV  211 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~  211 (354)
                      ..+...|++++|.+.|+.+..  |++    ...-.+..++.+.|+++.|...++.... ...-.| ..-+...+.+.+..
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~-~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSP-KADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-T-THHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCc-chhhHHHHHHHHHH
Confidence            344555666666666666553  221    2334566777788888888888887752 111111 12233333332211


Q ss_pred             c-------------CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758          212 K-------------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD  278 (354)
Q Consensus       212 ~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  278 (354)
                      .             ...+|...++.+.+.-+    .+.-..+|...+..+...=...--.+..-|.+.|.+..|..-++.
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~  166 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYP----NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY  166 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-T----TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            1             11233333333333322    111112222111111100000111235678889999999999999


Q ss_pred             HHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758          279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR  332 (354)
Q Consensus       279 m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  332 (354)
                      +.+.  -|+...                    .....-.++.+|.+.|..+.|.
T Consensus       167 v~~~--yp~t~~--------------------~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  167 VIEN--YPDTPA--------------------AEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHH--STTSHH--------------------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHH--CCCCch--------------------HHHHHHHHHHHHHHhCChHHHH
Confidence            9875  455433                    1223556777777777766443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.20  E-value=0.0072  Score=45.10  Aligned_cols=54  Identities=20%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758           71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE  124 (354)
Q Consensus        71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  124 (354)
                      ++..+.+.+..+....+++.+.+.+...+....+.++..|++.++.+...++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            445555566666666666666655544445556666666666655555555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.10  E-value=0.29  Score=36.87  Aligned_cols=80  Identities=8%  Similarity=-0.043  Sum_probs=46.2

Q ss_pred             HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758           74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS  149 (354)
Q Consensus        74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a  149 (354)
                      .+...|++++|..+|..+.-.+ +-+..-+..|..++-..+++++|...|...    ..|..++-....+|...|+.+.|
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence            3446778888888888777654 334445566777777777777777776654    22333333333444444444444


Q ss_pred             HHHhc
Q 038758          150 HCKFS  154 (354)
Q Consensus       150 ~~~~~  154 (354)
                      ...|+
T Consensus       125 ~~~f~  129 (165)
T PRK15331        125 RQCFE  129 (165)
T ss_pred             HHHHH
Confidence            44433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.86  E-value=0.92  Score=32.77  Aligned_cols=137  Identities=12%  Similarity=0.103  Sum_probs=79.1

Q ss_pred             hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHh
Q 038758           76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus        76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                      .-.|.+++..++.....+..   +..-+|=+|.-....-+=+-..++++.+  ..|..          .+|++......+
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~   79 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECY   79 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHH
Confidence            34577777788877776542   2333333333333333334444444443  11211          233333333333


Q ss_pred             ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      -.+. .++...+..+....++|+-+.-.+++.++.  + +-.|++...-.+..||.+.|+..++.+++.+.-+.|+
T Consensus        80 ~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~--k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   80 AKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELK--K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHh--h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3322 355667788999999999999999999985  3 6677888888999999999999999999998888886

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.84  E-value=0.54  Score=41.31  Aligned_cols=139  Identities=11%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhc-cCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchh-hHHHHHH
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVN-NSLIDFY  140 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~-~~li~~~  140 (354)
                      ..|...|....+..-++.|..+|-...+.| +.+++.+++++|..++ .|+...|.++|+-=   -+|...| +..+..+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345555555555555666666666665555 3455555555555443 34445555555532   2333333 3445555


Q ss_pred             HhcCchhHHHHHhccCCC---CC--hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758          141 AKCRYLKVSHCKFSKIKQ---KD--LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA  209 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~  209 (354)
                      .+.++-+.|..+|+.-.+   .+  ...|..+|.-=..-|+...+..+=+.|.    .+.|...+...+.+-|.
T Consensus       477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~----e~~pQen~~evF~Sry~  546 (660)
T COG5107         477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR----ELVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH----HHcCcHhHHHHHHHHHh
Confidence            555666666666653322   11  3346666665556666665555555554    23444444444444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.83  E-value=1.4  Score=34.01  Aligned_cols=102  Identities=11%  Similarity=0.021  Sum_probs=62.1

Q ss_pred             CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758          159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF  237 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (354)
                      |++..--.|..+..+.|++.+|...|++.   ..|+- -|....-.+.++....+++..+...++.+.+....       
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qa---lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-------  156 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQA---LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-------  156 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHH---hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------
Confidence            45555556677777777777777777777   34443 34445555556666666666666666666554421       


Q ss_pred             hHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       238 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                                  ..+..+.-.+-+.+...|+..+|+.-|+...+.
T Consensus       157 ------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         157 ------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             ------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence                        112233344556677777777777777777654

>PRK15331 chaperone protein SicA; Provisional

Probab=94.79  E-value=0.28  Score=36.93  Aligned_cols=86  Identities=10%  Similarity=0.059  Sum_probs=67.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      .+-..|++++|..+|.-+.-.+. -|..-|..|...+-..+++++|.+.|...-..+ +-|+..+--...+|...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            34578999999999999987542 233335555556667889999999999887765 4566667778899999999999


Q ss_pred             HHHHHHhh
Q 038758          119 TSGLFEEM  126 (354)
Q Consensus       119 a~~~~~~~  126 (354)
                      |...|+..
T Consensus       124 A~~~f~~a  131 (165)
T PRK15331        124 ARQCFELV  131 (165)
T ss_pred             HHHHHHHH
Confidence            99988875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.71  E-value=1.2  Score=41.41  Aligned_cols=244  Identities=10%  Similarity=0.017  Sum_probs=126.8

Q ss_pred             cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-ccCCCceehhh----H--HHHHHhcCChhHHHHHHHhhccccchhh
Q 038758           62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNACVKRP----L--LDLFIKCGRMEITSGLFEEMDQDFLVNN  134 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~----l--i~~~~~~g~~~~a~~~~~~~~~~~~~~~  134 (354)
                      .|-...|..+.......-.++.|++.|-..... |++.-...-+.    +  ...-+-.|++++|+++|-++...    .
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----D  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----D  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh----h
Confidence            466777887776666666666676666554432 22110000000    0  11223358888888888877332    2


Q ss_pred             HHHHHHHhcCchhHHHHHhccCCCC-----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQK-----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA  209 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~  209 (354)
                      ..|..+.+.|++-.+.++++.-...     -...|+.+-..+.....|++|.+.|..-.     -      -...+.++.
T Consensus       765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-----~------~e~~~ecly  833 (1189)
T KOG2041|consen  765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-----D------TENQIECLY  833 (1189)
T ss_pred             hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c------hHhHHHHHH
Confidence            3466777888888888877765431     12457777788888888888888776543     1      123344555


Q ss_pred             hhcCccccchhhhHhhhhcccccc------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          210 QVKGVKLGKAIHGYVLRHHIHLST------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       210 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                      +..++++.+.+-..+.+...-.+.      +.|.-++|.+.|-+...|-     .-+..|....++.+|.++-++..   
T Consensus       834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~---  905 (1189)
T KOG2041|consen  834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ---  905 (1189)
T ss_pred             HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc---
Confidence            555444444443333322211110      3344444444443333332     23445555556666665554443   


Q ss_pred             cCCCHhhHHHHHH-HhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          284 VKPNTVTIVSVLP-ACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       284 ~~p~~~t~~~li~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                       -|...|...--. -+...++           ..-.|..+-+.|++-+|-+++.+|.+
T Consensus       906 -l~qv~tliak~aaqll~~~~-----------~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  906 -LPQVQTLIAKQAAQLLADAN-----------HMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             -chhHHHHHHHHHHHHHhhcc-----------hHHHHHHhhhcccchhHHHHHHHHhH
Confidence             233322111000 0001111           22346677778888888888877765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.50  E-value=2.9  Score=36.26  Aligned_cols=283  Identities=14%  Similarity=0.033  Sum_probs=164.4

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCceehhhHHH--HHHhcCChhHHHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNACVKRPLLD--LFIKCGRMEITSG  121 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~  121 (354)
                      +..+...|..-+..      ..|..|-.++.  ..||-..|.+.-.+-.+. +.-|..-.-.|+.  +-.-.|+++.|.+
T Consensus        69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~  141 (531)
T COG3898          69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK  141 (531)
T ss_pred             cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence            33444555544322      23555555554  456777777766554322 2333333333332  2334699999999


Q ss_pred             HHHhhccccchhhH----HHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC
Q 038758          122 LFEEMDQDFLVNNS----LIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM  194 (354)
Q Consensus       122 ~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  194 (354)
                      -|+.|-.+..+--.    |.-.--+.|+.+.|...-+..-.  | -...+...+...+..|+|+.|+++++.-+. ..-+
T Consensus       142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~-~~vi  220 (531)
T COG3898         142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA-AKVI  220 (531)
T ss_pred             HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhh
Confidence            99999666655433    33333466888888877765543  3 245678899999999999999999987763 3445


Q ss_pred             CCCcc--hHHHHHHHhhhh---cCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--CCCcchHH
Q 038758          195 QPNTI--SLSGVLAACAQV---KGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--TRDVVVWN  257 (354)
Q Consensus       195 ~p~~~--t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--~~~~~~~~  257 (354)
                      .++..  .-..++.+-...   .+...+...-.+..+...+..+          +.|+..++-.+++.+-  .|....+.
T Consensus       221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~  300 (531)
T COG3898         221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL  300 (531)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence            55532  223333332211   2333444443333333222221          5566666666666554  33333332


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCH-hhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHH-hc
Q 038758          258 SIISAFVRSGQVVDALDLLRDVIVA-NVKPNT-VTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYG-RC  325 (354)
Q Consensus       258 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~-~~  325 (354)
                        +..+.+.|+  .+..-+++..+. .++||. .+...+..+-...|++..+         ..|....|..|.+.-. ..
T Consensus       301 --lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet  376 (531)
T COG3898         301 --LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET  376 (531)
T ss_pred             --HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence              222334444  455555554432 345654 5566677777788887665         7788888888877655 45


Q ss_pred             CChhHHHHHhhcCCC
Q 038758          326 GAIQKSRKIFVLMPH  340 (354)
Q Consensus       326 g~~~~A~~~~~~m~~  340 (354)
                      |+-.++...+-+-.+
T Consensus       377 GDqg~vR~wlAqav~  391 (531)
T COG3898         377 GDQGKVRQWLAQAVK  391 (531)
T ss_pred             CchHHHHHHHHHHhc
Confidence            999999999877665

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.22  E-value=1.4  Score=35.78  Aligned_cols=58  Identities=12%  Similarity=0.030  Sum_probs=37.9

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc---chHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +..-|.+.|.+..|..-+++|.  +. .+-+.   ..+-.+..+|...|-.++|.+.-..+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~--e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVL--EN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHH--hc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            3455788888888888888886  33 22222   33556667777888777777765554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.17  E-value=0.53  Score=38.51  Aligned_cols=93  Identities=11%  Similarity=0.033  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhc-cCC-CceehhhHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIK-FEG-NACVKRPLLD  108 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~  108 (354)
                      |+.-+. +.++|++..|.+.|....+....  -....+-.|...+...|+++.|..+|..+.+.- -.| -+..+-.|..
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            555555 34677799999999999887522  233346778899999999999999999988752 122 2356677778


Q ss_pred             HHHhcCChhHHHHHHHhh
Q 038758          109 LFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       109 ~~~~~g~~~~a~~~~~~~  126 (354)
                      +..+.|+.+.|..+|+++
T Consensus       224 ~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         224 SLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHhcCHHHHHHHHHHH
Confidence            888889999999888876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.09  E-value=1  Score=40.53  Aligned_cols=158  Identities=14%  Similarity=0.088  Sum_probs=103.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ....-+++++.+....+.-.-.. .......+.++..+.+.|..+.|.++-..-.            .-.....+.|+++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~  335 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence            44456788998877775211111 1124448888888899999999988754432            3356678999999


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC
Q 038758          118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN  197 (354)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~  197 (354)
                      .|.++-++.. +...|..|.+...+.|+++-|++.|++...     |..|+-.|.-.|+.++..++.+...  ..|    
T Consensus       336 ~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~--~~~----  403 (443)
T PF04053_consen  336 IALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAE--ERG----  403 (443)
T ss_dssp             HHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHH--HTT----
T ss_pred             HHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHH--Hcc----
Confidence            9999888764 666999999999999999999999998864     4556666777888887777777665  333    


Q ss_pred             cchHHHHHHHhhhhcCccccchhhh
Q 038758          198 TISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       198 ~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                        -++....++.-.|+.++..+++.
T Consensus       404 --~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  404 --DINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             --CHHHHHHHHHHcCCHHHHHHHHH
Confidence              25666666666777777666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=0.79  Score=43.42  Aligned_cols=137  Identities=15%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHH
Q 038758           41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS  120 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  120 (354)
                      .+.|++++|.+.|-+-... +.|     ..+|.-|.....+..-..+++.+.+.| ..+..--+.|+.+|.+.++.++..
T Consensus       379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHH
Confidence            3567777777776654422 222     234555566666666777778877777 455556677888999998888888


Q ss_pred             HHHHhhccccch--hhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          121 GLFEEMDQDFLV--NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       121 ~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ++.+........  ....+..+.+.+-.++|..+-..... +......++   -..+++++|++.+..+.
T Consensus       452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            877776422222  23455555555556666555544433 222233333   34566777777776663

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.44  E-value=8.7  Score=38.40  Aligned_cols=30  Identities=7%  Similarity=0.001  Sum_probs=15.3

Q ss_pred             cCCcccHHHHHHHHhccC--ChhhHHHHHHHHH
Q 038758           62 RPDHFVCPKVYKACSELK--DYRVGKDVYDYMI   92 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~   92 (354)
                      .|+ ...-.+|.++.+.+  .++.+.+......
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~  819 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ  819 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            444 33445566666655  4555555444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.10  E-value=5.6  Score=34.78  Aligned_cols=153  Identities=8%  Similarity=0.004  Sum_probs=86.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCc--C-CcccHHHHHHHHhc---cCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVR--P-DHFVCPKVYKACSE---LKDYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      ++-+|....+++...++.+.+....-.  + +...--...-++.+   .|+.++|.+++..+....-.+++.++..+.+.
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            333477789999999999999875211  1 11111122334445   88999999999986666557888888888777


Q ss_pred             HHhc---------CChhHHHHHHHhh-ccccchhh--HHHHHHHhcCc-hh---HHHHHh---ccC------C--CCChh
Q 038758          110 FIKC---------GRMEITSGLFEEM-DQDFLVNN--SLIDFYAKCRY-LK---VSHCKF---SKI------K--QKDLV  162 (354)
Q Consensus       110 ~~~~---------g~~~~a~~~~~~~-~~~~~~~~--~li~~~~~~~~-~~---~a~~~~---~~~------~--~~~~~  162 (354)
                      |-..         ...++|...|.+- ..+...|+  .+...+...|. .+   +..++-   ...      .  ..|-.
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW  306 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW  306 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence            6432         2345555555554 22222221  12222222222 11   112221   100      0  13444


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      -+.+++.+.+-.|+.++|.+.++.|.
T Consensus       307 d~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  307 DVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56677788888888888888888886

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=4.1  Score=35.63  Aligned_cols=80  Identities=11%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc---CcCCCHhhHHHHHHHhhccCcccCc-------cccch---hHHHHHHHHHHhcCC
Q 038758          261 SAFVRSGQVVDALDLLRDVIVA---NVKPNTVTIVSVLPACLKLAALPQG-------LGTGS---FVWNALIDMYGRCGA  327 (354)
Q Consensus       261 ~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~~-------~~~~~---~~~~~li~~~~~~g~  327 (354)
                      +-..+.|++.+|.+.|.+.+..   ++.|+...|...-....+.|.++++       ...|.   ..|..-.+++.-.++
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888888887642   3455556666666667777777776       23332   222222334445667


Q ss_pred             hhHHHHHhhcCCC
Q 038758          328 IQKSRKIFVLMPH  340 (354)
Q Consensus       328 ~~~A~~~~~~m~~  340 (354)
                      +++|.+-++...+
T Consensus       337 ~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.97  E-value=2.2  Score=36.20  Aligned_cols=121  Identities=12%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--
Q 038758           81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--  158 (354)
Q Consensus        81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--  158 (354)
                      +++...+++.|++.|++-+..+|-+-...... .+-+.....                       ..+|..+|+.|++  
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~-----------------------~~ra~~iy~~mKk~H  133 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEI-----------------------IQRAKEIYKEMKKKH  133 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHH-----------------------HHHHHHHHHHHHHhC
Confidence            56678999999999999888666553333333 122222211                       3456667777764  


Q ss_pred             -----CChhhhHHHHHHHHhCCCh----hHHHHHHHHHHhhhcCCCCCcc--hHHHHHHHhhhhcC--ccccchhhhHhh
Q 038758          159 -----KDLVSWNAMLAGYALGGFR----EEVTNLLDEMEMIQTDMQPNTI--SLSGVLAACAQVKG--VKLGKAIHGYVL  225 (354)
Q Consensus       159 -----~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~  225 (354)
                           ++..++..++..  ..++.    +.+...|+.+.  ..|+..+..  ..+.++..+.....  ..++..+++.+.
T Consensus       134 ~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~  209 (297)
T PF13170_consen  134 PFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK  209 (297)
T ss_pred             ccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence                 455667666655  33333    56677788887  778777643  33444433332222  346777778888


Q ss_pred             hhcc
Q 038758          226 RHHI  229 (354)
Q Consensus       226 ~~~~  229 (354)
                      +.|+
T Consensus       210 ~~~~  213 (297)
T PF13170_consen  210 KNGV  213 (297)
T ss_pred             HcCC
Confidence            8777

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=8.7  Score=36.55  Aligned_cols=145  Identities=11%  Similarity=-0.025  Sum_probs=75.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcC---CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRP---DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      |+-+.+.+.+++|++..+....  ..|   -.......|..+...|+++.|....-.|...    +..-|.-.+.-+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            4456677888888888776543  233   2344667777777788888877666665532    222333333333333


Q ss_pred             CChhHHHHHHHhhc--cccchhhHHHHHHHhcCchhHHHHHhccCC------------------C--CChhhhHHHHHHH
Q 038758          114 GRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK------------------Q--KDLVSWNAMLAGY  171 (354)
Q Consensus       114 g~~~~a~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------~--~~~~~~~~li~~~  171 (354)
                      ++....-.+.-.-+  .+..+|..++..+.. .+...-.+....-+                  +  .+...-..|..-|
T Consensus       437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY  515 (846)
T KOG2066|consen  437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY  515 (846)
T ss_pred             cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence            33332222211111  133444444444444 22222222221111                  0  1222334477778


Q ss_pred             HhCCChhHHHHHHHHHH
Q 038758          172 ALGGFREEVTNLLDEME  188 (354)
Q Consensus       172 ~~~~~~~~a~~~~~~m~  188 (354)
                      ...+++.+|++++-..+
T Consensus       516 l~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  516 LYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHccChHHHHHHHHhcc
Confidence            88888888888887665

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=92.80  E-value=0.23  Score=42.97  Aligned_cols=245  Identities=13%  Similarity=0.003  Sum_probs=122.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCc---CCcccHHHHHHHHhccCChhhHHHHHHHHH--Hh--ccC-CCceehhhHHHH
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVR---PDHFVCPKVYKACSELKDYRVGKDVYDYMI--SI--KFE-GNACVKRPLLDL  109 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~--~~~-~~~~~~~~li~~  109 (354)
                      .-+++.|+.+..+.+|+...+.|-.   .=...|..|-.+|.-.+++++|.++...=.  .+  |-+ -.......|-+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            3478899999999999999888732   222346666677777778888887654321  11  111 122334445555


Q ss_pred             HHhcCChhHHHHHHHh-h---------ccccchhhHHHHHHHhcCc--------------------hhHHHHHhccCCC-
Q 038758          110 FIKCGRMEITSGLFEE-M---------DQDFLVNNSLIDFYAKCRY--------------------LKVSHCKFSKIKQ-  158 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~-~---------~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~-  158 (354)
                      +--.|.+++|.-.-.+ +         ......+..|...|...|+                    ++.|.++|.+-.+ 
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666543222 1         1112223333344433322                    1222333321110 


Q ss_pred             --------CChhhhHHHHHHHHhCCChhHHHHHHHHHHh--hhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          159 --------KDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       159 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                              .-...|..|-+.|.-.|+++.|+..-+.=..  .+-|-+. ....+..+-+++.-.|+++.|.+.|+.-...
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence                    1122344455555555666665443221100  0222221 2344555555556666666665555544433


Q ss_pred             cccccc----------------ccchhHHHHHHhcccC---------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          228 HIHLST----------------ACGFVICSCSVFNQLS---------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       228 ~~~~~~----------------~~~~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      -+....                -...++.|+..+.+-.         .-....|=+|-.+|...|..++|+...+.-.+.
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333322                2223344443333221         113456667888999999999998877665543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.54  E-value=0.35  Score=25.98  Aligned_cols=26  Identities=12%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      +|+.|-..|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47788999999999999999999965

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.39  E-value=1  Score=37.47  Aligned_cols=49  Identities=12%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCcCCCHhhHHHHHHHh
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTIVSVLPAC  298 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li~~~  298 (354)
                      +-+...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+........
T Consensus       184 p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~  237 (280)
T COG3629         184 PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL  237 (280)
T ss_pred             ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence            45788999999999999999999999999865     58999888877766663

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.36  E-value=0.93  Score=40.18  Aligned_cols=61  Identities=7%  Similarity=-0.045  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      .|+.+-.+|.+.|++++|+..|++..+.  .|+..    .|..+..+|...|++++|.+.++...+.
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8899999999999999999999998875  56643    5888999999999999999999999875

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.33  E-value=5.3  Score=32.61  Aligned_cols=168  Identities=11%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             HHHHhcCchhHHHHHhccCCC--C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQ--K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV  211 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~  211 (354)
                      ..-.+.|++++|.+.|+.+..  |    ...+--.++.++.+.++++.|...+++... ..+-.|| .-|..-|.+++..
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~-lyP~~~n-~dY~~YlkgLs~~  119 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR-LYPTHPN-ADYAYYLKGLSYF  119 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCCC-hhHHHHHHHHHHh
Confidence            344566777777777777764  2    223444566778899999999999988862 3333333 4466666665532


Q ss_pred             cCccccchhhhHhhhhccccccccchhHHHHHHhccc----C----CCCcch-----------HH-HHHHHHHhcCCHHH
Q 038758          212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL----S----TRDVVV-----------WN-SIISAFVRSGQVVD  271 (354)
Q Consensus       212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~----~~~~~~-----------~~-~li~~~~~~g~~~~  271 (354)
                      ..++...+              ......+|..-|+..    +    .+|...           ++ .+.+-|.++|.+..
T Consensus       120 ~~i~~~~r--------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         120 FQIDDVTR--------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             ccCCcccc--------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            22211110              111111222222221    1    122211           11 23456889999999


Q ss_pred             HHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758          272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL  343 (354)
Q Consensus       272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~  343 (354)
                      |..-+++|.+. .+-+..+                     ....-.+.++|-+.|-.++|.+.-+-+..  ||.
T Consensus       186 A~nR~~~v~e~-y~~t~~~---------------------~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         186 AINRFEEVLEN-YPDTSAV---------------------REALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHhc-cccccch---------------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            99999999876 2222222                     22355677788888888888776665554  554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.29  E-value=4.2  Score=33.86  Aligned_cols=111  Identities=13%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             cCChhHHHHHHHHHHh-CCCcCCcccHHHHHHHHhc-cC-ChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhcCChhH
Q 038758           43 LGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSE-LK-DYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      +....+|+.+|+.... ..+--|..+...+++.... .+ ....--++.+.+... |-.++..+...++..+++.+++..
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3445566666663322 2355677777788887765 22 333333444555432 446777788888888888888888


Q ss_pred             HHHHHHhhc------cccchhhHHHHHHHhcCchhHHHHHh
Q 038758          119 TSGLFEEMD------QDFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus       119 a~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                      ..++++...      .|..+|..+|+.....|+..-..++.
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            888887752      23334444444444444444333333

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.02  E-value=1.5  Score=40.12  Aligned_cols=132  Identities=13%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHH
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT  181 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  181 (354)
                      ..+.+...+.+.|..++|+++--.       -+.-.....+.|+++.|.++..+.  .+..-|..|-.+....+++..|.
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s~D-------~d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~  686 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELSTD-------PDQRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLAS  686 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcCCC-------hhhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHH
Confidence            455667777777777777754211       122334456678888887776654  46678999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH
Q 038758          182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS  261 (354)
Q Consensus       182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~  261 (354)
                      +.|...+           -|..++-.+...|+.+....+-....+.|.                          .|.-.-
T Consensus       687 EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------------------------~N~AF~  729 (794)
T KOG0276|consen  687 ECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--------------------------NNLAFL  729 (794)
T ss_pred             HHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc--------------------------cchHHH
Confidence            9888775           356666677777776655555555555553                          344455


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 038758          262 AFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       262 ~~~~~g~~~~a~~~~~~m  279 (354)
                      +|...|+++++.+++.+-
T Consensus       730 ~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  730 AYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHcCCHHHHHHHHHhc
Confidence            667778888888877543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.89  E-value=4.8  Score=34.15  Aligned_cols=130  Identities=12%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc--c----CChhhHHHHHHHHHHhcc---CCCceehhhHHHHHHhcCCh
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE--L----KDYRVGKDVYDYMISIKF---EGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~  116 (354)
                      +++...+++.|++.|.+-+..+|-+..-....  .    ....++..+|+.|++...   .++-..+..|+..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            55778899999999999888887764443333  2    246678999999998742   2344455555433  34444


Q ss_pred             hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC-----CCC-hhhhHHHHHHHHhCCC--hhHHHHHHHHHH
Q 038758          117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-----QKD-LVSWNAMLAGYALGGF--REEVTNLLDEME  188 (354)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~  188 (354)
                      +...+.                          ++.+|+.+.     +.| ......++...-....  ...+.++++.++
T Consensus       156 e~l~~~--------------------------~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~  209 (297)
T PF13170_consen  156 EELAER--------------------------MEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK  209 (297)
T ss_pred             HHHHHH--------------------------HHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            433322                          222333222     223 2333333333222222  347889999999


Q ss_pred             hhhcCCCCCcchHHHHH
Q 038758          189 MIQTDMQPNTISLSGVL  205 (354)
Q Consensus       189 ~~~~~~~p~~~t~~~ll  205 (354)
                        +.|+++....|..+-
T Consensus       210 --~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  210 --KNGVKIKYMHYPTLG  224 (297)
T ss_pred             --HcCCccccccccHHH
Confidence              889998888877653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.71  E-value=1.5  Score=33.98  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      .+..+...|.+.|+++.|++.|.++.+....|.  ...+-.+|+...-.+++..+...+......
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            677777888888888888888888877643332  334566777777777888777777766544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.57  E-value=0.58  Score=41.42  Aligned_cols=61  Identities=2%  Similarity=-0.158  Sum_probs=52.2

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc----eehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA----CVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      +...++.+..+|...|++++|...|+...+.  .|+.    .+|..+..+|.+.|+.++|.+.+++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456888889999999999999999998876  4553    35899999999999999999999886

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=91.50  E-value=0.46  Score=41.22  Aligned_cols=251  Identities=8%  Similarity=-0.003  Sum_probs=144.0

Q ss_pred             HHhccCChhhHHHHHHHHHHhccCCC----ceehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHH
Q 038758           74 ACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDF  139 (354)
Q Consensus        74 ~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~  139 (354)
                      -+++.|+.+....+|+..++.| .-|    ..+|..|-++|.-.+|+++|.++-..=          .....+...|.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            4789999999999999999988 333    345777788888889999998865432          1122333345555


Q ss_pred             HHhcCchhHHHHHhccCC----C-----CChhhhHHHHHHHHhCCC--------------------hhHHHHHHHHHHhh
Q 038758          140 YAKCRYLKVSHCKFSKIK----Q-----KDLVSWNAMLAGYALGGF--------------------REEVTNLLDEMEMI  190 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~----~-----~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~  190 (354)
                      +--.|.+++|.-.-.+-.    +     .....+..+-+.|...|+                    ++.|.++|.+=.+.
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            556677776654432211    1     112233334555544432                    22344444322100


Q ss_pred             --hcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758          191 --QTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG  267 (354)
Q Consensus       191 --~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  267 (354)
                        ..|-. .-...|..+-+.|.-.|+++.+...++.-+....             +.=++  ..--..+..+-+++.-.|
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~-------------efGDr--AaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ-------------EFGDR--AAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH-------------HhhhH--HHHHHhhcccchhhhhhc
Confidence              11211 1234455555566666777777766654332211             11111  112345677788888889


Q ss_pred             CHHHHHHHHHHHHHcCcC-----CCHhhHHHHHHHhhccCcccCc----------------cccchhHHHHHHHHHHhcC
Q 038758          268 QVVDALDLLRDVIVANVK-----PNTVTIVSVLPACLKLAALPQG----------------LGTGSFVWNALIDMYGRCG  326 (354)
Q Consensus       268 ~~~~a~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g  326 (354)
                      +++.|.+.|+.-....++     ....+.-+|-+.|.-..++..+                ..-....+-+|.++|...|
T Consensus       250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG  329 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence            999999988875433221     1222333344444444444444                2234567888999999999


Q ss_pred             ChhHHHHHhhcCCC
Q 038758          327 AIQKSRKIFVLMPH  340 (354)
Q Consensus       327 ~~~~A~~~~~~m~~  340 (354)
                      ..++|..+.+.-.+
T Consensus       330 ~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  330 EHRKALYFAELHLR  343 (639)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999988877654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.42  E-value=0.48  Score=25.44  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLM   56 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m   56 (354)
                      |+.|-..|.+.|++++|.+++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            556666666666666666666663

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.22  E-value=0.37  Score=27.29  Aligned_cols=24  Identities=21%  Similarity=0.294  Sum_probs=11.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMID   58 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~   58 (354)
                      .+-..|.+.|++++|.++|++..+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444444444444444444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.21  E-value=1.4  Score=36.72  Aligned_cols=77  Identities=8%  Similarity=0.066  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCceehhhH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACVKRPL  106 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l  106 (354)
                      ++..++..+...|+++.+...++++.+.. +-+...|..+|.+|.+.|+...|++.|+.+.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            77778888888888888888888888765 55677788888888888888888888887765     3667766665555


Q ss_pred             HHH
Q 038758          107 LDL  109 (354)
Q Consensus       107 i~~  109 (354)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.03  E-value=6.8  Score=37.57  Aligned_cols=170  Identities=11%  Similarity=0.058  Sum_probs=82.3

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHH----HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML----AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      .-++.+++...++-|..+-+.-.. |..+...++    +-+.+.|++++|...|-+-.   .-+.|.     .+++-|..
T Consensus       339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI---~~le~s-----~Vi~kfLd  409 (933)
T KOG2114|consen  339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI---GFLEPS-----EVIKKFLD  409 (933)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc---ccCChH-----HHHHHhcC
Confidence            345555555566666655544332 222222222    22345667777766665542   122331     23333333


Q ss_pred             hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                      ..+....-..++.+.+.|+                     .+...-+.|+.+|.+.++.++-.++.+... .|...  .-
T Consensus       410 aq~IknLt~YLe~L~~~gl---------------------a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd  465 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGL---------------------ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FD  465 (933)
T ss_pred             HHHHHHHHHHHHHHHHccc---------------------ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--ee
Confidence            3333333344444444443                     234444566777777777766666555544 23221  11


Q ss_pred             HHHHHHHhhccCcccCc------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          291 IVSVLPACLKLAALPQG------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       291 ~~~li~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ....+..|.+.+-++++      +.........   .+-..|++++|.+.++.++-
T Consensus       466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~i---lle~~~ny~eAl~yi~slp~  518 (933)
T KOG2114|consen  466 VETALEILRKSNYLDEAELLATKFKKHEWVLDI---LLEDLHNYEEALRYISSLPI  518 (933)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence            23344444444444444      2222323333   33456778888888888763

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.72  E-value=5.3  Score=29.48  Aligned_cols=49  Identities=10%  Similarity=-0.020  Sum_probs=23.7

Q ss_pred             HHhcCchhHHHHHhccCCC--C----ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          140 YAKCRYLKVSHCKFSKIKQ--K----DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ..+.|++++|.+.|+.+..  |    ....--.++.+|.+.+++++|...++...
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3444555555555555542  1    11223344555555555555555555554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.71  E-value=3.6  Score=33.84  Aligned_cols=105  Identities=14%  Similarity=0.017  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC  242 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~  242 (354)
                      .|+.-+.. .+.|++..|...|....+.-.+-.-....+-.|..++...|+.+.|..+|..+.+.....           
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s-----------  211 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS-----------  211 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-----------
Confidence            47766665 467779999999988851111122223456678888999999999998888877764421           


Q ss_pred             HHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                             +.-....--|.....+.|+.++|..+|+++.+.  -|+.
T Consensus       212 -------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t  248 (262)
T COG1729         212 -------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGT  248 (262)
T ss_pred             -------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence                   112245556677788899999999999999865  4544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.58  E-value=1.6  Score=37.93  Aligned_cols=87  Identities=7%  Similarity=-0.071  Sum_probs=48.8

Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh-HHHHHHHHhC
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW-NAMLAGYALG  174 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~  174 (354)
                      ++..|..++.+.+++..|.+.-++.    +.+....-.-..++...|+++.|+..|+++.+  |+...- +.++...-+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            4555666666666666666555544    34444444455666666777777777776664  544333 3333333333


Q ss_pred             CCh-hHHHHHHHHHH
Q 038758          175 GFR-EEVTNLLDEME  188 (354)
Q Consensus       175 ~~~-~~a~~~~~~m~  188 (354)
                      .+. +...++|..|.
T Consensus       339 ~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  339 REYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            333 34467777775

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.57  E-value=4.1  Score=37.22  Aligned_cols=93  Identities=10%  Similarity=-0.009  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHH-HHHhccCChhhHHHHHHHHHHhc--c-CCCceeh
Q 038758           32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVY-KACSELKDYRVGKDVYDYMISIK--F-EGNACVK  103 (354)
Q Consensus        32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~--~-~~~~~~~  103 (354)
                      .|+.++..++.    ..+.+.+.++++.+.++  -|+...|...- +.+...|+++.|.+.|+......  . ......+
T Consensus       231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            77888777665    46788899999999986  57776665543 44567899999999999765321  1 1223345


Q ss_pred             hhHHHHHHhcCChhHHHHHHHhh
Q 038758          104 RPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       104 ~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      --+...+.-.+++++|.+.|.++
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHH
Confidence            56777788999999999999988

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=90.24  E-value=3.7  Score=30.40  Aligned_cols=87  Identities=7%  Similarity=0.033  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----cCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-----RPDHFVCPKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRP  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~  105 (354)
                      ..|+++.-....+++...+.+++.+.....     ..+...|++++.+..+... --.+..+|..|++.+.+++..-|..
T Consensus        41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~  120 (145)
T PF13762_consen   41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC  120 (145)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            568888888889999999999998854321     3567789999999977766 5567899999999888999999999


Q ss_pred             HHHHHHhcCChhH
Q 038758          106 LLDLFIKCGRMEI  118 (354)
Q Consensus       106 li~~~~~~g~~~~  118 (354)
                      +|.++.+-...+.
T Consensus       121 li~~~l~g~~~~~  133 (145)
T PF13762_consen  121 LIKAALRGYFHDS  133 (145)
T ss_pred             HHHHHHcCCCCcc
Confidence            9998887754443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.08  E-value=1.3  Score=24.97  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                      +|..+-..|...|++++|+++|++..+.  .|+...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence            5677889999999999999999999975  566543

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.02  E-value=1.6  Score=29.52  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      ++.+-++.+...++.|+.....+.+++|.+.+|+..|.++|+-.+... ..+...|..++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l   83 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence            555666666666788888888899999988899999999888776331 22344555554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.96  E-value=2.7  Score=30.99  Aligned_cols=77  Identities=13%  Similarity=0.005  Sum_probs=44.2

Q ss_pred             HHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      ..+.|++++|.+.|+.+..+-.  +-....--.|+.++.+.++++.|...++...+....---.-|-..+.+++.....
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            3456777777777777766521  1122334556667777777777777777777664221223455555555544443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.77  E-value=6.7  Score=29.94  Aligned_cols=134  Identities=10%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhc--CchhHHHHHhccCCCCCh
Q 038758           85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC--RYLKVSHCKFSKIKQKDL  161 (354)
Q Consensus        85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~  161 (354)
                      .+++.-+.+.+++|+...+..+++.+.+.|++.....++..= -+|.......+-.+...  .-..-|.+++.++.    
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence            356666677899999999999999999999998888776643 33333333333222211  11334445555543    


Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      ..+..++..+...|++-+|+++.+...  .    .+......++.+..+.+|...-..+++.+.+.+
T Consensus        90 ~~~~~iievLL~~g~vl~ALr~ar~~~--~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   90 TAYEEIIEVLLSKGQVLEALRYARQYH--K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHcC--C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            246667788889999999999998764  2    222334667888888877776666666666544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=89.76  E-value=12  Score=33.81  Aligned_cols=167  Identities=13%  Similarity=0.061  Sum_probs=91.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      +|.---+..+.+.-.+.-++..+  +.||-.+.-.++ +--....+.++.+++++..+.| +.... .....   ...|.
T Consensus       174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-E~~lg-~s~~~---~~~g~  245 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-EASLG-KSQFL---QHHGH  245 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-HHhhc-hhhhh---hcccc
Confidence            33334455566666666666555  345544433333 2224556788899998888765 11000 00000   11111


Q ss_pred             hhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---LVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      .-+.. .-+...+-..+-..|..+.-+.|+.++|.+.|++|.+  |.   ......|+.++...+.+.++..++.+-.  
T Consensus       246 ~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd--  322 (539)
T PF04184_consen  246 FWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD--  322 (539)
T ss_pred             hhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc--
Confidence            11110 0000011122224566777788999999999988863  32   2356679999999999999999999874  


Q ss_pred             hcCCCC-CcchHHHHHHHhhhhcC
Q 038758          191 QTDMQP-NTISLSGVLAACAQVKG  213 (354)
Q Consensus       191 ~~~~~p-~~~t~~~ll~~~~~~~~  213 (354)
                      +...+. -...|+..+--+...++
T Consensus       323 Di~lpkSAti~YTaALLkaRav~d  346 (539)
T PF04184_consen  323 DISLPKSATICYTAALLKARAVGD  346 (539)
T ss_pred             cccCCchHHHHHHHHHHHHHhhcc
Confidence            322222 24557766554444443

The molecular function of this protein is uncertain.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.68  E-value=2.2  Score=37.11  Aligned_cols=115  Identities=11%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             HHHHhcCChhHHHHHHHhh-------------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhH
Q 038758          108 DLFIKCGRMEITSGLFEEM-------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWN  165 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~  165 (354)
                      +.|.+.|++..|..-|++.                   .....++..|..+|.+.+++.+|++.-+....   +|+-..-
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy  295 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY  295 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence            4566777777777766664                   23455677888899999999999988776654   5566655


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh-cC-ccccchhhhHhhh
Q 038758          166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-KG-VKLGKAIHGYVLR  226 (354)
Q Consensus       166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~-~~-~~~a~~~~~~~~~  226 (354)
                      .--.++...|+++.|...|+.+.    .+.|+......=|..|.+. .. .+...++|..|..
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~----k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKAL----KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66778899999999999999997    4678877776666655432 21 2333455554443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.60  E-value=11  Score=31.51  Aligned_cols=137  Identities=11%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccch-----hhHHHHHHHhcCchhH
Q 038758           74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV-----NNSLIDFYAKCRYLKV  148 (354)
Q Consensus        74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~  148 (354)
                      .....|++..|...|....... +-+...--.+..+|...|+.+.|..++..++.+...     ...-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4567889999999998888764 445666778889999999999999999998443221     1223444555544444


Q ss_pred             HHHHhccCC-CC-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758          149 SHCKFSKIK-QK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK  212 (354)
Q Consensus       149 a~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~  212 (354)
                      ...+-++.- .| |...--.+...+...|+.+.|++.+-.+.+...|.. |...-..++..+.-.|
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            444433332 24 455555677788888999998887766652123332 3444455555555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.36  E-value=7.9  Score=32.38  Aligned_cols=140  Identities=9%  Similarity=-0.007  Sum_probs=93.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      .....|++.+|..+|+...+.. +-+...--.+...+...|+++.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4567899999999999998864 234556777888899999999999999987643212222223344555555555554


Q ss_pred             HHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCCChhH
Q 038758          119 TSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGGFREE  179 (354)
Q Consensus       119 a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~  179 (354)
                      ...+-.+.   +.|...--.+...+...|+.++|.+.+-.+..     .|...-..++..|.--|.-+.
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            44444444   44555556678889999999999887755543     345556666666666664333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.16  E-value=5.6  Score=32.27  Aligned_cols=187  Identities=9%  Similarity=0.041  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH------HHHHHHhccCChhhHHHHHHHHH----HhccCCCce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP------KVYKACSELKDYRVGKDVYDYMI----SIKFEGNAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~  101 (354)
                      .|----.+|....++++|-..+.+..+- .+.|...|+      ...-..-....+.++.++++...    +.| .|++.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA  110 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA  110 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence            4445555666777777777766665531 222333222      22222223334444444444432    223 23221


Q ss_pred             ehh-hHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--------CCh-
Q 038758          102 VKR-PLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------KDL-  161 (354)
Q Consensus       102 ~~~-~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~-  161 (354)
                      .-. --..-..+.-+++.|+++|.+-          ..-...+...-..+.+...+++|-..|.+-..        ++. 
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            110 0001122334555555555554          11223344455566666666666665544432        111 


Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC--CCCcchHHHHHHHhhhhcCccccchhhh
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                      ..|-..|-.+.-..++..|.+.+++-.. ..++  .-+..+...+|.+|- .||.+.+..+..
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~q-ip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ-IPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhc-CccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence            1244445555566788888888877431 1222  224567777777764 456666655544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.11  E-value=16  Score=32.64  Aligned_cols=53  Identities=6%  Similarity=-0.007  Sum_probs=28.7

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhHHHHH
Q 038758          264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWNAL  318 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~~~~l  318 (354)
                      ...|++.++.-.-..+.  .+.|+..+|..+--++....+.++|      ++|+..++++=
T Consensus       473 ysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dsk  531 (549)
T PF07079_consen  473 YSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSK  531 (549)
T ss_pred             HhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHH
Confidence            34566666554444443  3456666666555555555555555      55565555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.77  E-value=6.4  Score=33.56  Aligned_cols=142  Identities=11%  Similarity=-0.021  Sum_probs=79.5

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce----ehhhHHHHHHhcCChhH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC----VKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~  118 (354)
                      +|++.+|-..++++.+. .+.|...++..-.+|.-.|+...-...++.+...- .|+..    +-..+.-++..+|-+++
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence            35555555556665553 34455556666666666676666666666655331 22332    22334445566777777


Q ss_pred             HHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC--C-----hhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          119 TSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--D-----LVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       119 a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      |++.-++-    +.|.-.-.++...+--.|+++++.++.++-...  +     ...|=...-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            77766665    333334455666666677777777776655421  0     11122223334566788888888864

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=88.68  E-value=4.8  Score=29.17  Aligned_cols=86  Identities=12%  Similarity=-0.020  Sum_probs=50.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehhhHHHHHHhcCC
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLFIKCGR  115 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~  115 (354)
                      +....|+++.|++.|.+.... .+-....||.-..++.-.|+.++|.+-+++..+..-..+..   .|..-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            355667777777777776654 23455667777777777777777777777766553122221   12222234455566


Q ss_pred             hhHHHHHHHh
Q 038758          116 MEITSGLFEE  125 (354)
Q Consensus       116 ~~~a~~~~~~  125 (354)
                      .+.|..=|+.
T Consensus       131 dd~AR~DFe~  140 (175)
T KOG4555|consen  131 DDAARADFEA  140 (175)
T ss_pred             hHHHHHhHHH
Confidence            6666555444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.62  E-value=1.8  Score=29.63  Aligned_cols=59  Identities=10%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      +...-++.+...++.|+.....+.+++|.+.+++..|.++|+-.+..- .+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence            455666666667788888888888888888889998888888877542 23333666554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.47  E-value=10  Score=34.24  Aligned_cols=107  Identities=12%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD----VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      ...+.++++++++..+.+-..-.+....+..-...+....++    ..+-..+-.+.-+.|+.++|++.+++|.+..  |
T Consensus       213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p  290 (539)
T PF04184_consen  213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--P  290 (539)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--C
Confidence            344677777777776665432211111111001111111222    2233344555667899999999999998643  3


Q ss_pred             CHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          287 NTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       287 ~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ....                     ..+...|++++...+.+.++..++.+..+
T Consensus       291 ~~~~---------------------l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  291 NLDN---------------------LNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             ccch---------------------hhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            2211                     12366788888888888888888877654

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.23  E-value=0.38  Score=25.53  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=15.1

Q ss_pred             CCCceehhhHHHHHHhcCChhHHH
Q 038758           97 EGNACVKRPLLDLFIKCGRMEITS  120 (354)
Q Consensus        97 ~~~~~~~~~li~~~~~~g~~~~a~  120 (354)
                      +-+...|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445566666666666666666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.99  E-value=7.7  Score=28.83  Aligned_cols=17  Identities=18%  Similarity=0.440  Sum_probs=8.4

Q ss_pred             HHhcCChhHHHHHHHhh
Q 038758          110 FIKCGRMEITSGLFEEM  126 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~  126 (354)
                      +...|++++|.++|+++
T Consensus        54 ~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        54 LIARGNYDEAARILREL   70 (153)
T ss_pred             HHHcCCHHHHHHHHHhh
Confidence            34445555555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.80  E-value=14  Score=30.20  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=17.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHH
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMIS   93 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~   93 (354)
                      |...-.+|....++++|...+....+
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~   59 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASK   59 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            44445566777788888887766553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.18  E-value=17  Score=30.60  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=72.1

Q ss_pred             HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHH-------hccC-ChhhHHHHHHHHHHh----c----cCCC-----
Q 038758           41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC-------SELK-DYRVGKDVYDYMISI----K----FEGN-----   99 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~-~~~~a~~~~~~m~~~----~----~~~~-----   99 (354)
                      .+.|+++.|...+.+.+......++.....|-..|       ...+ +++.|..++++..+.    +    ..|+     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46789999999998887643222333222332222       2344 777777666665543    1    1111     


Q ss_pred             ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCC
Q 038758          100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGF  176 (354)
Q Consensus       100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~  176 (354)
                      ..+...++.+|...+..+...+                           |.++++.+..  |+ +.++-.-+..+.+.++
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k---------------------------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~  136 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK---------------------------ALNALRLLESEYGNKPEVFLLKLEILLKSFD  136 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH---------------------------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCC
Confidence            1234444555555554443332                           3333333321  33 3444455666666788


Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758          177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~  208 (354)
                      .+.+.+.+..|.  . .+......+..++..+
T Consensus       137 ~~~~~~~L~~mi--~-~~~~~e~~~~~~l~~i  165 (278)
T PF08631_consen  137 EEEYEEILMRMI--R-SVDHSESNFDSILHHI  165 (278)
T ss_pred             hhHHHHHHHHHH--H-hcccccchHHHHHHHH
Confidence            888888888886  2 2332334455555544

It is also involved in sporulation [].

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=86.69  E-value=23  Score=31.65  Aligned_cols=123  Identities=11%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      --|-++.-|...|+..+|.+..+++...     -+.....-+++...+.-..+.-+.-.+.+.+...+...-+.+..++.
T Consensus       216 kIn~~l~eyv~~getrea~rciR~L~vs-----ffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfs  290 (645)
T KOG0403|consen  216 KINGNLIEYVEIGETREACRCIRELGVS-----FFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFS  290 (645)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhCCC-----chhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCch
Confidence            5677778888999888888887776432     22222222333322222222222111222222223333334444444


Q ss_pred             hcC--------ChhHHHHHHHhhcc---------------------c---c----chhhHHHHHHHhcCchhHHHHHhcc
Q 038758          112 KCG--------RMEITSGLFEEMDQ---------------------D---F----LVNNSLIDFYAKCRYLKVSHCKFSK  155 (354)
Q Consensus       112 ~~g--------~~~~a~~~~~~~~~---------------------~---~----~~~~~li~~~~~~~~~~~a~~~~~~  155 (354)
                      +.+        ++..|...|+.+.|                     +   .    .....+|+-|...|+..+..+.++.
T Consensus       291 r~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~D  370 (645)
T KOG0403|consen  291 RKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRD  370 (645)
T ss_pred             hhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHH
Confidence            432        44556666666500                     0   1    1335688888999999988888887


Q ss_pred             CCCC
Q 038758          156 IKQK  159 (354)
Q Consensus       156 ~~~~  159 (354)
                      +.-|
T Consensus       371 Ln~~  374 (645)
T KOG0403|consen  371 LNLP  374 (645)
T ss_pred             cCCc
Confidence            7643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.45  E-value=1.9  Score=23.62  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=24.1

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      .+++.|-..|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4688899999999999999999999865

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.37  E-value=1.4  Score=21.55  Aligned_cols=24  Identities=13%  Similarity=0.048  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHhhc
Q 038758          314 VWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       314 ~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                      ....+...+...|++++|.+++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            345688899999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK11906 transcriptional regulator; Provisional

Probab=86.30  E-value=15  Score=32.95  Aligned_cols=81  Identities=7%  Similarity=-0.077  Sum_probs=54.9

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      .....+|.++.++..+.+ +-|......+..+..-.++++.+...|++....+ +-...+|........-+|+.++|.+.
T Consensus       317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345566777777777765 4455555555555666777888888888877654 33345566666666777888888887


Q ss_pred             HHh
Q 038758          123 FEE  125 (354)
Q Consensus       123 ~~~  125 (354)
                      +++
T Consensus       395 i~~  397 (458)
T PRK11906        395 IDK  397 (458)
T ss_pred             HHH
Confidence            777

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.05  E-value=13  Score=28.14  Aligned_cols=20  Identities=0%  Similarity=-0.134  Sum_probs=10.5

Q ss_pred             HHHhcCchhHHHHHhccCCC
Q 038758          139 FYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus       139 ~~~~~~~~~~a~~~~~~~~~  158 (354)
                      .+.+.|++.+|.++|+++..
T Consensus        53 l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   53 LHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHHhCCHHHHHHHHHHHhc
Confidence            34455555555555555543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.04  E-value=32  Score=32.77  Aligned_cols=46  Identities=13%  Similarity=0.053  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK   79 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~   79 (354)
                      --.+|-.+.|.|++++|.++..+.... .......|...+..+....
T Consensus       114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~  159 (613)
T PF04097_consen  114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP  159 (613)
T ss_dssp             HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred             cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence            346778899999999999999666543 4666677888888887653

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.34  E-value=2  Score=23.53  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMID   58 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~   58 (354)
                      +++.|-..|...|++++|..++++...
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            567777777778888888887777654

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=84.73  E-value=11  Score=26.36  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=38.8

Q ss_pred             hHhhhhh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 038758           25 QLLEVFC-NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS   93 (354)
Q Consensus        25 ~li~~~~-~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~   93 (354)
                      +|+.+|. +-..++..+.+..+.=...++-+.+.+.+      -|..|+..|...|..++|.+++..+.+
T Consensus         4 aLlk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen    4 ALLKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HHHHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            4555554 33345555555544434444444444433      388888888888888888888888776

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=84.63  E-value=15  Score=27.75  Aligned_cols=48  Identities=10%  Similarity=0.093  Sum_probs=23.5

Q ss_pred             HhcCchhHHHHHhccCC--CCChhhhHHH-HHHHHhCCChhHHHHHHHHHH
Q 038758          141 AKCRYLKVSHCKFSKIK--QKDLVSWNAM-LAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~--~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .+.++.++++.+++.++  .|.......+ .-.+.+.|+|.+|.++|+++.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34456666666665554  2332222111 122345566666666666654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.52  E-value=0.82  Score=23.92  Aligned_cols=28  Identities=11%  Similarity=0.108  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          313 FVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       313 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .+|..+...|...|++++|...|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4688899999999999999999988765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=83.91  E-value=6.2  Score=28.62  Aligned_cols=49  Identities=10%  Similarity=0.036  Sum_probs=25.6

Q ss_pred             HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758           75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE  124 (354)
Q Consensus        75 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  124 (354)
                      +...|+.+.|.+.|.+....- +.+...||.-..++.-.|+.++|.+=++
T Consensus        53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHH
Confidence            345555555555555554432 3345555555555555555555554333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.90  E-value=0.63  Score=24.00  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHhhcCCC--CC
Q 038758          315 WNALIDMYGRCGAIQKSRKIFVLMPH--KN  342 (354)
Q Consensus       315 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~  342 (354)
                      +-.+...+.+.|++++|.+.|+++.+  |+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            34567788899999999999998876  54

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.82  E-value=4.3  Score=31.45  Aligned_cols=60  Identities=8%  Similarity=0.017  Sum_probs=43.6

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .+..+...|.+.|+.+.|.+.|..+.+....+.  ...+-.+|+.....+++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            467777888888888888888888877644433  345667777888888888877765553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.68  E-value=0.92  Score=23.58  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          313 FVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       313 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ..|..+...+.+.|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3577888999999999999999987654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.66  E-value=3.7  Score=21.30  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          254 VVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      .+|..+...|...|++++|+..|++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            35778889999999999999999999854

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.62  E-value=5.9  Score=31.15  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--------ccccchhhHHHHHHHhcCchhHH
Q 038758           84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------DQDFLVNNSLIDFYAKCRYLKVS  149 (354)
Q Consensus        84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a  149 (354)
                      |.+.|-.+...+..-++.....|...|. ..|.+++..++.+.        .+++..+..|.+.|-+.|+++.|
T Consensus       125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3344444444333333333333333333 33444444444443        23444455555555555555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.47  E-value=3.7  Score=27.87  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      ++.+-++.+.  ...+.|+.....+.++||.+.+|+..|.++++-++..
T Consensus        25 e~rr~mN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K   71 (103)
T cd00923          25 ELRRGLNNLF--GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK   71 (103)
T ss_pred             HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            5566666666  6778888888888888888888888888887766643

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.32  E-value=12  Score=25.65  Aligned_cols=60  Identities=13%  Similarity=0.146  Sum_probs=44.3

Q ss_pred             HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchH
Q 038758          137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL  201 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~  201 (354)
                      ++.+...|++++|..+.+....||...|-++-..  +.|..+++..-+..|.  ..| .|....|
T Consensus        46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla--~sg-~p~lq~F  105 (115)
T TIGR02508        46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA--ASG-DPRLQTF  105 (115)
T ss_pred             HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH--hCC-CHHHHHH
Confidence            4577888999999999999988999999777654  6677777777777775  333 3444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.01  E-value=18  Score=27.87  Aligned_cols=124  Identities=11%  Similarity=0.020  Sum_probs=61.5

Q ss_pred             HhcCchhHHHHHhccCCCCChhhhHHHH-----HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH-H--hhhhc
Q 038758          141 AKCRYLKVSHCKFSKIKQKDLVSWNAML-----AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA-A--CAQVK  212 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~-~--~~~~~  212 (354)
                      .+.+..++|+.-|..+.+.+--.|-.|.     ......|+...|...|+++-  ...-.|-..-=..-++ +  +...|
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia--~dt~~P~~~rd~ARlraa~lLvD~g  146 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA--ADTSIPQIGRDLARLRAAYLLVDNG  146 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh--ccCCCcchhhHHHHHHHHHHHhccc
Confidence            3445555666666555543333333222     22456677777778887776  4444443331111122 1  22333


Q ss_pred             CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      .++.+....+.+...+-                    +--...-..|--+--+.|++.+|.+.|..+......|
T Consensus       147 sy~dV~srvepLa~d~n--------------------~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         147 SYDDVSSRVEPLAGDGN--------------------PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             cHHHHHHHhhhccCCCC--------------------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            33333332222111110                    1112334456566678899999999999987643344

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.74  E-value=7.4  Score=31.03  Aligned_cols=56  Identities=5%  Similarity=-0.072  Sum_probs=28.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHH
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI   92 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~   92 (354)
                      .++.+.+.+.+.+++...++-.+.. +-|..+-..+++.++-.|++++|..-++..-
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a   62 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA   62 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence            3445555555555555555544432 2233344455555555555555555444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.98  E-value=3.9  Score=28.04  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +..+-++.+.  ...+.|+.....+.|++|.+.+++..|.++++-++..
T Consensus        28 e~rrglN~l~--~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLF--GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHT--TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4455555555  6667777777777777777777777777776665544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.85  E-value=9.7  Score=30.77  Aligned_cols=17  Identities=6%  Similarity=0.063  Sum_probs=12.6

Q ss_pred             HhCCChhHHHHHHHHHH
Q 038758          172 ALGGFREEVTNLLDEME  188 (354)
Q Consensus       172 ~~~~~~~~a~~~~~~m~  188 (354)
                      ...+++.+|.++|++.-
T Consensus       165 a~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45577788888888776

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=81.72  E-value=9  Score=28.42  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             CChhhhHHHHHHHHhCCC-hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758          159 KDLVSWNAMLAGYALGGF-REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV  211 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~  211 (354)
                      .+..+|++++.+..+..- ---+..+|+-|+  +.+.+++..-|..+++++.+.
T Consensus        77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk--~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK--KNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             cccchHHHHHHHHccChHHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHcC
Confidence            466789999999976665 446788999998  788999999999999988765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.65  E-value=26  Score=28.42  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcCcCC
Q 038758          264 VRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       264 ~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      +..+++++|+++|++.....+.-
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            45688999999999987765443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.01  E-value=14  Score=31.30  Aligned_cols=109  Identities=8%  Similarity=0.020  Sum_probs=66.3

Q ss_pred             hccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccc
Q 038758          153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL  231 (354)
Q Consensus       153 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (354)
                      |..-....+.+...++..-....+++++...+-.++.. +.-..|+...+ .+++-|. .-+++++..+...=.+.|+  
T Consensus        56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGi--  131 (418)
T KOG4570|consen   56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGI--  131 (418)
T ss_pred             hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhcc--
Confidence            33333344555555555555567778887777766510 11123333332 2223222 2345566666666666777  


Q ss_pred             ccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758          232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  283 (354)
                                        -||.++++.+|+.+.+.+++.+|.++.-.|....
T Consensus       132 ------------------F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  132 ------------------FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             ------------------ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                              7888888888888888888888888877776554

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=80.55  E-value=10  Score=26.54  Aligned_cols=65  Identities=17%  Similarity=0.290  Sum_probs=43.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758          257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV  336 (354)
Q Consensus       257 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  336 (354)
                      ++|+.+|... +......+++       .||.-....+-..+.+.+.           |..|+..|...|.+++|.+++.
T Consensus         3 TaLlk~Yl~~-~~~~l~~llr-------~~N~C~~~~~e~~L~~~~~-----------~~eL~~lY~~kg~h~~AL~ll~   63 (108)
T PF10366_consen    3 TALLKCYLET-NPSLLGPLLR-------LPNYCDLEEVEEVLKEHGK-----------YQELVDLYQGKGLHRKALELLK   63 (108)
T ss_pred             HHHHHHHHHh-CHHHHHHHHc-------cCCcCCHHHHHHHHHHcCC-----------HHHHHHHHHccCccHHHHHHHH
Confidence            4567777766 5554444443       2344344444444444444           8899999999999999999998


Q ss_pred             cCCC
Q 038758          337 LMPH  340 (354)
Q Consensus       337 ~m~~  340 (354)
                      +..+
T Consensus        64 ~l~~   67 (108)
T PF10366_consen   64 KLAD   67 (108)
T ss_pred             HHhc
Confidence            7765

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.40  E-value=5.6  Score=20.40  Aligned_cols=28  Identities=14%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      .|..+-..+.+.|++++|++.|++..+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4666778899999999999999998754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.24  E-value=20  Score=33.32  Aligned_cols=92  Identities=10%  Similarity=0.010  Sum_probs=44.8

Q ss_pred             cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758          113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT  192 (354)
Q Consensus       113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  192 (354)
                      .|+++.|..++..++  ...-+.+...+.+.|-.++|+++-.     |...   -.....+.|+++.|.++..+..    
T Consensus       599 rrd~~~a~~vLp~I~--k~~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~----  664 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP--KEIRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN----  664 (794)
T ss_pred             hccccccccccccCc--hhhhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc----
Confidence            455555555444443  2333445555555555555554321     1111   1122234566666666555553    


Q ss_pred             CCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758          193 DMQPNTISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       193 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                          +..-|..+-.+..+.+++..|.+.+.
T Consensus       665 ----s~~Kw~~Lg~~al~~~~l~lA~EC~~  690 (794)
T KOG0276|consen  665 ----SEVKWRQLGDAALSAGELPLASECFL  690 (794)
T ss_pred             ----chHHHHHHHHHHhhcccchhHHHHHH
Confidence                33345556666666666655555543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=80.12  E-value=26  Score=27.35  Aligned_cols=156  Identities=12%  Similarity=-0.013  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH-H
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD-L  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~  109 (354)
                      .+......+...+.+..+...+...... ........+..........+++..+.+.+.........+ ......... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            3445555566667777777776666542 223333445555555556666777777776666543222 122222222 5


Q ss_pred             HHhcCChhHHHHHHHhhcc-------ccchhhHHHHHHHhcCchhHHHHHhccCCC---C-ChhhhHHHHHHHHhCCChh
Q 038758          110 FIKCGRMEITSGLFEEMDQ-------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---K-DLVSWNAMLAGYALGGFRE  178 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~  178 (354)
                      +...|+++.+...+++...       ....+......+...++.+.+...+.....   . ....+..+-..+...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            6777777777777776511       111122222334556677777777766553   2 2344666666667777777


Q ss_pred             HHHHHHHHHH
Q 038758          179 EVTNLLDEME  188 (354)
Q Consensus       179 ~a~~~~~~m~  188 (354)
                      .+...+....
T Consensus       220 ~a~~~~~~~~  229 (291)
T COG0457         220 EALEYYEKAL  229 (291)
T ss_pred             HHHHHHHHHH
Confidence            7777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.73
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.73
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.63
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.45
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.44
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.41
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.41
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.41
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.33
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.32
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.3
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.25
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.25
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.25
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.19
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.1
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.02
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.98
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.98
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.9
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.76
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.68
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.66
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.45
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.39
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.37
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.35
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.34
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.33
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.26
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.26
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.26
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.25
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.23
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.2
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.18
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.18
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.1
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.09
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.01
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.98
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.98
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.96
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.94
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.93
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.93
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.89
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.89
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.88
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.84
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.83
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.81
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.71
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.59
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.57
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.4
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.36
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.35
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.25
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.22
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.02
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.98
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.27
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.15
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.04
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.02
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.92
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.66
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.57
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.97
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.55
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.42
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.41
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.34
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	92.0
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.83
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	89.78
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	89.64
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.63
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	88.05
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.53
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.3
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.04
2p58_C	116	Putative type III secretion protein YSCG; type III	86.4
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	86.21
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	86.0
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.74
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	84.33
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.89
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	81.38
3hra_A	201	Ankyrin repeat family protein; structural protein;	80.85
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	80.72
2zu6_B	307	Programmed cell death protein 4; protein-protein c	80.65

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=7.3e-35  Score=261.72  Aligned_cols=205  Identities=15%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC---
Q 038758            4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---   80 (354)
Q Consensus         4 a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---   80 (354)
                      +..+...+.+.+..+++..         .++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+.   
T Consensus         9 ~e~L~~~~~~k~~~~spe~---------~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~   79 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEA---------LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE   79 (501)
T ss_dssp             ---------------CHHH---------HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS
T ss_pred             HHHHHHHHHHhcccCCCHH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh
Confidence            3344555555555555442         4555666666666666666666666666666666666666666665443   


Q ss_pred             ------hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc
Q 038758           81 ------YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS  154 (354)
Q Consensus        81 ------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (354)
                            ++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|....                        
T Consensus        80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------  135 (501)
T 4g26_A           80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------  135 (501)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------
T ss_pred             hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------
Confidence                  45566666666666666666666666666666666666665555542111                        


Q ss_pred             cCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccc
Q 038758          155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA  234 (354)
Q Consensus       155 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  234 (354)
                        ..||..|||++|.+|++.|++++|.++|++|.  ..|+.||..||+++|.+|++.|+.++|.+++++|.+.+.     
T Consensus       136 --~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-----  206 (501)
T 4g26_A          136 --IQPRLRSYGPALFGFCRKGDADKAYEVDAHMV--ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-----  206 (501)
T ss_dssp             --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred             --CCCccceehHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-----
Confidence              13566666666666666666666666666665  556666666666666666666666666666666665555     


Q ss_pred             cchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758          235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVR  265 (354)
Q Consensus       235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  265 (354)
                                     .|+..||+.++..|+.
T Consensus       207 ---------------~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          207 ---------------QVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             ---------------SBCHHHHHHHHHHHHS
T ss_pred             ---------------CcCHHHHHHHHHHHhc
Confidence                           5556666665555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.5e-33  Score=253.30  Aligned_cols=214  Identities=10%  Similarity=0.032  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           47 EEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        47 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      ..+..+.+++.++++.+... .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            34566777888887665543 58899999999999999999999999999999999999999999988765332      


Q ss_pred             hccccchhhHHHHHHHhcCchhHHHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchH
Q 038758          126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL  201 (354)
Q Consensus       126 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~  201 (354)
                                     .+.+++++|.++|++|.    .||..|||+||.+|++.|++++|.++|++|.  ..|+.||..||
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~Pd~~ty  143 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK--AFGIQPRLRSY  143 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HTTCCCCHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccee
Confidence                           12334455556665554    4899999999999999999999999999999  99999999999


Q ss_pred             HHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       202 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      +.+|.+|++.|++++|.++|+.|.+.|+                    .||..||++||.+|++.|+.++|.+++++|.+
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~--------------------~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVESEV--------------------VPEEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999                    99999999999999999999999999999999


Q ss_pred             cCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758          282 ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       282 ~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  327 (354)
                      .|..|+..|                        |+.++..|+..+.
T Consensus       204 ~g~~ps~~T------------------------~~~l~~~F~s~~a  225 (501)
T 4g26_A          204 LVRQVSKST------------------------FDMIEEWFKSEVA  225 (501)
T ss_dssp             HTSSBCHHH------------------------HHHHHHHHHSHHH
T ss_pred             hCCCcCHHH------------------------HHHHHHHHhcCcc
Confidence            999999988                        8889999987543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6e-30  Score=237.32  Aligned_cols=334  Identities=11%  Similarity=0.020  Sum_probs=217.5

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhh-----------------------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMMGMYNVLGYYEEIVNLFYLMID   58 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------~y~~li~~~~~~~~~~~a~~~~~~m~~   58 (354)
                      ++|..+++.|.+  ..|+..++..+...|.                       +|+.++..|.+.|++++|.++|+++..
T Consensus       101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  178 (597)
T 2xpi_A          101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNP  178 (597)
T ss_dssp             HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT
T ss_pred             hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            467777888773  4577777777777776                       788888888888988888888885322


Q ss_pred             C---------------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc---------------------------
Q 038758           59 K---------------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF---------------------------   96 (354)
Q Consensus        59 ~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------------------------   96 (354)
                      .               |.+++..+|+.++.+|.+.|++++|.++|+.|.+.+.                           
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l  258 (597)
T 2xpi_A          179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL  258 (597)
T ss_dssp             TC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred             ccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhc
Confidence            1               2234567888888888888888888888888876531                           


Q ss_pred             -------------------------------------------CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccc
Q 038758           97 -------------------------------------------EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQD  129 (354)
Q Consensus        97 -------------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~  129 (354)
                                                                 +++..+++.++.+|.+.|++++|.++|+++    +.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  338 (597)
T 2xpi_A          259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN  338 (597)
T ss_dssp             CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc
Confidence                                                       134444445555555555555555555554    224


Q ss_pred             cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758          130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA  206 (354)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~  206 (354)
                      ..+++.++.+|.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|.++|+++.  .. .+.+..+|+.+..
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~  415 (597)
T 2xpi_A          339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS--TM-DPQFGPAWIGFAH  415 (597)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH--Hh-CCCCHHHHHHHHH
Confidence            44555555555555555555555554432   245566666667777777777777777665  21 1223456667777


Q ss_pred             HhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHH
Q 038758          207 ACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDAL  273 (354)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~  273 (354)
                      ++.+.|++++|..+++.+.+.+.....          +.|++++|...|+++.   +.+..+|+.++..|.+.|++++|.
T Consensus       416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  495 (597)
T 2xpi_A          416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI  495 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            777777777777777666655432222          6667777777776654   345666777777777777777777


Q ss_pred             HHHHHHHHc----CcCCC--HhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758          274 DLLRDVIVA----NVKPN--TVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       274 ~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                      ++|+++.+.    +..|+  ..+|..+..+|.+.|++++|         ..| +..+|..+..+|.+.|++++|.+.|++
T Consensus       496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            777777654    55666  56777777777777777665         223 566777777777777777777777777


Q ss_pred             CCC
Q 038758          338 MPH  340 (354)
Q Consensus       338 m~~  340 (354)
                      +.+
T Consensus       576 ~l~  578 (597)
T 2xpi_A          576 SLA  578 (597)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=7.2e-29  Score=230.08  Aligned_cols=314  Identities=10%  Similarity=-0.013  Sum_probs=225.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|+.+++.+.+.|++++|..+|++|..  ..|+..++..+..+|.+.|++++|.++|+.+..  .+++..+++.++.+|.
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           86 YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLV  161 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHH
Confidence            566666666666666666666666663  345556666666666666666666666665542  2455556666666666


Q ss_pred             hcCChhHHHHHHHhhccc--------------------cchhhHHHHHHHhcCchhHHHHHh------------------
Q 038758          112 KCGRMEITSGLFEEMDQD--------------------FLVNNSLIDFYAKCRYLKVSHCKF------------------  153 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~--------------------~~~~~~li~~~~~~~~~~~a~~~~------------------  153 (354)
                      +.|++++|.++|+++.|+                    ..+|+.++.+|.+.|++++|.+.|                  
T Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  241 (597)
T 2xpi_A          162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV  241 (597)
T ss_dssp             HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            666666666666643221                    345555555555555555555544                  


Q ss_pred             ------------------------------------------------------ccCCC--CChhhhHHHHHHHHhCCCh
Q 038758          154 ------------------------------------------------------SKIKQ--KDLVSWNAMLAGYALGGFR  177 (354)
Q Consensus       154 ------------------------------------------------------~~~~~--~~~~~~~~li~~~~~~~~~  177 (354)
                                                                            +++.+  ++..+|+.++.+|.+.|++
T Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  321 (597)
T 2xpi_A          242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF  321 (597)
T ss_dssp             HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred             HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence                                                                  44443  5667788888888888888


Q ss_pred             hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcc
Q 038758          178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQ  247 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~  247 (354)
                      ++|.++|+++.  ..+ +.+..++..++.++.+.|+.++|..+++.+.+.......          +.|++++|...|++
T Consensus       322 ~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  398 (597)
T 2xpi_A          322 IDVLAITTKIL--EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK  398 (597)
T ss_dssp             HHHHHHHHHHH--HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            88888888886  433 336777888888888888888888888888755433222          88999999999987


Q ss_pred             cC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhH
Q 038758          248 LS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV  314 (354)
Q Consensus       248 ~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~  314 (354)
                      +.   +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..+|.+.|+++++          .+.+..+
T Consensus       399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  477 (597)
T 2xpi_A          399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL  477 (597)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            64   4467799999999999999999999999998654 45778899999999999998887          3346888


Q ss_pred             HHHHHHHHHhcCChhHHHHHhhcCCC--------CC--cccHHHhhhhc
Q 038758          315 WNALIDMYGRCGAIQKSRKIFVLMPH--------KN--LVSWNVMISVY  353 (354)
Q Consensus       315 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~--~~~~~~li~~~  353 (354)
                      |+.++..|.+.|++++|.++|+++.+        |+  ..+|+.+..+|
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999998853        44  56777776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=1.4e-22  Score=177.91  Aligned_cols=321  Identities=10%  Similarity=0.019  Sum_probs=248.8

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|.+.+..+.+.  .|+...         .+..+...+...|++++|...++...+.. +.+...|..+...+.+.|++
T Consensus        16 ~~A~~~~~~~~~~--~p~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A           16 EAAERHCMQLWRQ--EPDNTG---------VLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHh--CCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            4566666666654  355443         34455666778888888888888877653 45667788888888888888


Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      ++|.+.|+.+.+.. +.+...|..+..++.+.|++++|.+.|+++    +.+...+..+...+...|++++|.+.|+++.
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            88888888888753 444557888888888888888888888887    3344566677788888888888888888775


Q ss_pred             C--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758          158 Q--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST  233 (354)
Q Consensus       158 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  233 (354)
                      +  | +..+|+.+...+.+.|++++|.+.|+++.  ..  .|+ ...+..+...+...|++++|...+....+.......
T Consensus       163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence            3  3 45678888888888888888888888886  32  333 456777777888888888888888877766543222


Q ss_pred             ----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758          234 ----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK  300 (354)
Q Consensus       234 ----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  300 (354)
                                ..|++++|...|++..   +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence                      6788888888888764   3356789999999999999999999999998753 5577889999999999


Q ss_pred             cCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          301 LAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       301 ~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .|+++++         ..| +..++..+...|.+.|++++|.+.|+++.+
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9998887         334 577899999999999999999999999877

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.90  E-value=4.1e-22  Score=174.92  Aligned_cols=308  Identities=11%  Similarity=0.037  Sum_probs=256.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      ...+.+.|++++|.+.++++.+.  .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            45677899999999999998876  4544 456666677889999999999999988765 6678899999999999999


Q ss_pred             hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      +++|.+.|+++    +.+...|..+..++.+.|++++|.+.|+++.+  |+ ...+..+...+...|++++|.+.|+++.
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999988    33455789999999999999999999988764  54 4457778888899999999999999997


Q ss_pred             hhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcc
Q 038758          189 MIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVV  254 (354)
Q Consensus       189 ~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~  254 (354)
                        ..  .| +..++..+...+.+.|++++|...++.+.+.......          ..|++++|...|++..   +.+..
T Consensus       163 --~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          163 --ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             --HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             --Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence              32  34 4678889999999999999999999999887654332          7788999999888654   34578


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHh
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGR  324 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~  324 (354)
                      +|..+...+.+.|++++|++.|+++.+.+ +.+..++..+...+.+.|+++++          .+.+..++..+...+.+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            89999999999999999999999998753 23467888999999999999887          45578899999999999


Q ss_pred             cCChhHHHHHhhcCCC--CC-cccHHHhhhh
Q 038758          325 CGAIQKSRKIFVLMPH--KN-LVSWNVMISV  352 (354)
Q Consensus       325 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~  352 (354)
                      .|++++|.+.++++.+  |+ ..+|..+...
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  348 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999999999987  54 4455555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.87  E-value=1.6e-20  Score=167.93  Aligned_cols=284  Identities=10%  Similarity=0.042  Sum_probs=236.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+...+..+..+|.
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            78889999999999999999999998764 4567789999999999999999999999999876 566788999999999


Q ss_pred             hcCChhHHHHHHHhh----cccc---chhhHH------------HHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDF---LVNNSL------------IDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA  169 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~  169 (354)
                      +.|++++|.+.|+++    +.+.   ..+..+            ...+.+.|++++|...|+++.+   .+...+..+..
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  185 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE  185 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999999998    2233   555555            4448999999999999998763   46778999999


Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      .|.+.|++++|.+.|+++.  .. .+.+..++..+...+...|++++|...++.+.+...                    
T Consensus       186 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------------------  242 (450)
T 2y4t_A          186 CFIKEGEPRKAISDLKAAS--KL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--------------------  242 (450)
T ss_dssp             HHHHTTCGGGGHHHHHHHH--HH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------
T ss_pred             HHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Confidence            9999999999999999996  32 234577899999999999999999999998886542                    


Q ss_pred             CCCcchHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCcCCC-----HhhHHHHHHHhhccCcccCc-----
Q 038758          250 TRDVVVWNSI------------ISAFVRSGQVVDALDLLRDVIVANVKPN-----TVTIVSVLPACLKLAALPQG-----  307 (354)
Q Consensus       250 ~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~~-----  307 (354)
                       .+...+..+            ...+.+.|++++|...|+++.+.  .|+     ...+..+...+.+.|+++++     
T Consensus       243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          243 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             233334443            78888999999999999999864  455     34677888889999998887     


Q ss_pred             ----ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758          308 ----LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL  343 (354)
Q Consensus       308 ----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~  343 (354)
                          ..| +..+|..+..+|.+.|++++|.+.+++..+  |+.
T Consensus       320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence                344 678899999999999999999999999876  554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.3e-18  Score=157.88  Aligned_cols=322  Identities=10%  Similarity=-0.075  Sum_probs=247.1

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|...++.+++..  |++.          +|..+..++.+.|++++|...++++.+.+ +.+...+..+...+...|++
T Consensus        23 ~~A~~~~~~al~~~--p~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           23 DDAIKYYNWALELK--EDPV----------FYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF   89 (514)
T ss_dssp             HHHHHHHHHHHHHC--CCHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcC--ccHH----------HHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence            56788888888776  6655          67778888899999999999999998764 33456788888899999999


Q ss_pred             hhHHHHHHHHHHhccCCCce------------------------------------------------------------
Q 038758           82 RVGKDVYDYMISIKFEGNAC------------------------------------------------------------  101 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~------------------------------------------------------------  101 (354)
                      ++|.+.|+.+.+.+ +++..                                                            
T Consensus        90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
T 2gw1_A           90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF  168 (514)
T ss_dssp             HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence            99999999887664 22211                                                            


Q ss_pred             -------------------ehhhHHHHHH---hcCChhHHHHHHHhhcc------------------ccchhhHHHHHHH
Q 038758          102 -------------------VKRPLLDLFI---KCGRMEITSGLFEEMDQ------------------DFLVNNSLIDFYA  141 (354)
Q Consensus       102 -------------------~~~~li~~~~---~~g~~~~a~~~~~~~~~------------------~~~~~~~li~~~~  141 (354)
                                         .+..+...+.   +.|++++|...|+++..                  +..++..+...+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (514)
T 2gw1_A          169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF  248 (514)
T ss_dssp             TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence                               1122222233   27889999998887622                  3456677888899


Q ss_pred             hcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccch
Q 038758          142 KCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA  219 (354)
Q Consensus       142 ~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~  219 (354)
                      ..|++++|...|++..+  |+...+..+...+...|++++|.+.++.+.  .. .+.+...+..+...+...|++++|..
T Consensus       249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL--KL-DSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH--TT-CTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh--hc-CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999987753  456778888888999999999999999886  32 23356678888888899999999999


Q ss_pred             hhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-C
Q 038758          220 IHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-K  285 (354)
Q Consensus       220 ~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~  285 (354)
                      .++...+.......          ..|++++|...++...   +.+...|..+...+.+.|++++|...++++.+..- .
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            99888876544322          7888999998888764   34667888889999999999999999999876421 1


Q ss_pred             CC----HhhHHHHHHHhhc---cCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          286 PN----TVTIVSVLPACLK---LAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       286 p~----~~t~~~li~~~~~---~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      |+    ...+..+...+..   .|+++.+         ..| +..++..+...|.+.|++++|.+.|++..+
T Consensus       406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            22    2378888888888   8988887         333 567888999999999999999999998876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.8e-18  Score=156.98  Aligned_cols=301  Identities=7%  Similarity=-0.066  Sum_probs=243.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|...-..+.+.|++++|...|+++.+.+  |+...|..+..++...|++++|.+.++.+.+.+ +.+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            35566778899999999999999999875  788999999999999999999999999999875 566778999999999


Q ss_pred             hcCChhHHHHHHHhh---cc-c----------------------------------------------------------
Q 038758          112 KCGRMEITSGLFEEM---DQ-D----------------------------------------------------------  129 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~~-~----------------------------------------------------------  129 (354)
                      +.|++++|...|+++   .| +                                                          
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            999999999999987   11 1                                                          


Q ss_pred             ---------------------cchhhHHHHHHH---hcCchhHHHHHhccCCC----------------C-ChhhhHHHH
Q 038758          130 ---------------------FLVNNSLIDFYA---KCRYLKVSHCKFSKIKQ----------------K-DLVSWNAML  168 (354)
Q Consensus       130 ---------------------~~~~~~li~~~~---~~~~~~~a~~~~~~~~~----------------~-~~~~~~~li  168 (354)
                                           ...+..+...+.   +.|++++|...|+++.+                | +..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence                                 111122222233   37999999999987644                1 345678888


Q ss_pred             HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchh
Q 038758          169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFV  238 (354)
Q Consensus       169 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~  238 (354)
                      ..+...|++++|.+.|+.+.  ...  |+...+..+..++...|++++|...++...+.......          ..|++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l--~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAI--ELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHH--HHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHCCCHHHHHHHHHHHH--hhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence            99999999999999999997  433  33777888889999999999999999998876544332          78889


Q ss_pred             HHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc--------
Q 038758          239 ICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------  307 (354)
Q Consensus       239 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~--------  307 (354)
                      ++|...|++..   +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.+.+        
T Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999998764   4466788888999999999999999999998653 33456788888899999998887        


Q ss_pred             -cccc-------hhHHHHHHHHHHh---cCChhHHHHHhhcCCC
Q 038758          308 -LGTG-------SFVWNALIDMYGR---CGAIQKSRKIFVLMPH  340 (354)
Q Consensus       308 -~~~~-------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~  340 (354)
                       ..|+       ..++..+...+.+   .|++++|.+.+++..+
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence             2222       2388899999999   9999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=2e-20  Score=173.84  Aligned_cols=120  Identities=13%  Similarity=-0.003  Sum_probs=107.0

Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI  239 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  239 (354)
                      ..|||++|++|++.|++++|.++|++|.+. ..|+.||..|||++|.+||+.|++++|.++|+.|.+.|+          
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~----------  196 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL----------  196 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence            358999999999999999999999888621 358999999999999999999999999999999999999          


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758          240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQ-VVDALDLLRDVIVANVKPNTVTIVSVLPACLK  300 (354)
Q Consensus       240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  300 (354)
                                .||+.|||++|.++++.|+ .++|.++|++|.+.|+.||..||++++.++.+
T Consensus       197 ----------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          197 ----------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             ----------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence                      9999999999999999998 47899999999999999999996655544443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.80  E-value=2e-18  Score=154.22  Aligned_cols=277  Identities=6%  Similarity=-0.060  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-
Q 038758           48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-  126 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-  126 (354)
                      .+...+.+..... +.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...|+++ 
T Consensus        10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444444332 4466678889999999999999999999999764 667889999999999999999999999998 


Q ss_pred             ---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-h---hhhHHH------------HHHHHhCCChhHHHHHHH
Q 038758          127 ---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-L---VSWNAM------------LAGYALGGFREEVTNLLD  185 (354)
Q Consensus       127 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l------------i~~~~~~~~~~~a~~~~~  185 (354)
                         +.+...+..+..+|.+.|++++|.+.|+++.+  |+ .   ..+..+            ...+.+.|++++|.+.|+
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD  167 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               44577889999999999999999999998865  33 2   455555            344889999999999999


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758          186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR  265 (354)
Q Consensus       186 ~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  265 (354)
                      ++.  .. .+.+...+..+..++.+.|++++|...++.+.+..                     +.+..+|..+...|.+
T Consensus       168 ~~~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~  223 (450)
T 2y4t_A          168 KIL--EV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------------------NDNTEAFYKISTLYYQ  223 (450)
T ss_dssp             HHH--HH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------------CSCHHHHHHHHHHHHH
T ss_pred             HHH--Hh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHH
Confidence            997  32 23456778899999999999999999999988775                     4577899999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCcCCCHhh-HHHH------------HHHhhccCcccCc---------cccc-----hhHHHHH
Q 038758          266 SGQVVDALDLLRDVIVANVKPNTVT-IVSV------------LPACLKLAALPQG---------LGTG-----SFVWNAL  318 (354)
Q Consensus       266 ~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l------------i~~~~~~~~~~~~---------~~~~-----~~~~~~l  318 (354)
                      .|++++|+..|+++.+.  .|+... +..+            ...+.+.|+++++         ..|+     ..+|..+
T Consensus       224 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI  301 (450)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            99999999999999854  455443 3333            6788889998887         4454     4578899


Q ss_pred             HHHHHhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758          319 IDMYGRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV  352 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~  352 (354)
                      ...+.+.|++++|.+.++++.+  | +...|..+...
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            9999999999999999999875  5 45566655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=3.3e-17  Score=141.49  Aligned_cols=283  Identities=10%  Similarity=0.049  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++.
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence            35667788899999999999999998864 3456778889999999999999999999999874 456788999999999


Q ss_pred             hcCChhHHHHHHHhh---cc----ccchhhHH------------HHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758          112 KCGRMEITSGLFEEM---DQ----DFLVNNSL------------IDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA  169 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~  169 (354)
                      ..|++++|...|++.   .|    +...+..+            ...+...|++++|...|++..+   .+...+..+..
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  162 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE  162 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            999999999999998   23    44455444            5788999999999999998753   46677888999


Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      .+...|++++|.+.++...  .. .+.+...+..+...+...|++++|...++...+...                    
T Consensus       163 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------  219 (359)
T 3ieg_A          163 CFIKEGEPRKAISDLKAAS--KL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--------------------  219 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--TT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------
T ss_pred             HHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--------------------
Confidence            9999999999999999996  32 344567888888999999999999999988887643                    


Q ss_pred             CCCcchHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh-----hHHHHHHHhhccCcccCc-----
Q 038758          250 TRDVVVWN------------SIISAFVRSGQVVDALDLLRDVIVANVKPNTV-----TIVSVLPACLKLAALPQG-----  307 (354)
Q Consensus       250 ~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~~-----  307 (354)
                       .+...+.            .+...+.+.|++++|...+++..+..  |+..     .+..+...+...|+++.+     
T Consensus       220 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  296 (359)
T 3ieg_A          220 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS  296 (359)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence             1222222            22556778888888888888887643  4322     234456677788887776     


Q ss_pred             ----ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC--CC
Q 038758          308 ----LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KN  342 (354)
Q Consensus       308 ----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~  342 (354)
                          ..| +..++..+...|.+.|++++|.+.|++..+  |+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence                334 677899999999999999999999999887  55

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=8.5e-17  Score=137.36  Aligned_cols=266  Identities=11%  Similarity=0.014  Sum_probs=217.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL  101 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence            45677788889999999999999998865 4455667778888999999999999999999865 567788999999999


Q ss_pred             hcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          112 KCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       112 ~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      ..| ++++|.+.|++.    +.+...|..+...+...|++++|...|++..+  | +...+..+...+...|++++|.+.
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999 999999999987    44577889999999999999999999988764  3 456777889999999999999999


Q ss_pred             HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC-CCCcchHHHHHHH
Q 038758          184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISA  262 (354)
Q Consensus       184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~  262 (354)
                      +++..  .. .+.+...+..+...+...|++++|...++...+......             +... ..+..+|..+...
T Consensus       182 ~~~al--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          182 FSQAL--SI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG-------------NEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHHHH--TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS-------------CSCTTTTCCHHHHHHHHH
T ss_pred             HHHHH--Hh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc-------------ccccccHHHHHHHHHHHH
Confidence            99996  32 234567788888999999999999999988776542100             0000 2245688999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       263 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      +.+.|++++|...+++..+..  |+.                       ..++..+...|.+.|++++|.+.+++..+
T Consensus       246 ~~~~g~~~~A~~~~~~a~~~~--~~~-----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          246 CRKLKKYAEALDYHRQALVLI--PQN-----------------------ASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTC-----------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHhcCHHHHHHHHHHHHhhC--ccc-----------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            999999999999999998653  332                       23477788888889999999999988877

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.78  E-value=1.1e-19  Score=169.00  Aligned_cols=144  Identities=10%  Similarity=-0.011  Sum_probs=127.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh---CCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMID---KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD  108 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  108 (354)
                      |||+||++|++.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            999999999999999999999988764   58999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCh-hHHHHHHHhh-----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCC
Q 038758          109 LFIKCGRM-EITSGLFEEM-----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGG  175 (354)
Q Consensus       109 ~~~~~g~~-~~a~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~  175 (354)
                      ++++.|+. ++|.++|++|     .||..+|+.++.+..+.+-++.+.++...+..     |.+.+...|.+.|.+.+
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            99999985 7899999999     89999999999999888888887777666653     22455566666666655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=3.8e-17  Score=141.96  Aligned_cols=268  Identities=7%  Similarity=-0.082  Sum_probs=206.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|.+.|+...+.. +.+..++..+..+|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            47788889999999999999999998865 4467778999999999999999999999998875 556788999999999


Q ss_pred             hcCChhHHHHHHHhh----ccccc----------hhhHHHHHHHhcCchhHHHHHhccCCC--C---ChhhhHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFL----------VNNSLIDFYAKCRYLKVSHCKFSKIKQ--K---DLVSWNAMLAGYA  172 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~  172 (354)
                      ..|++++|...|++.    +.+..          .+..+...+.+.|++++|...|+++.+  |   +..++..+...+.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            999999999999998    22222          233457889999999999999988764  3   5678888999999


Q ss_pred             hCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC
Q 038758          173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD  252 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  252 (354)
                      +.|++++|.+.|++..  .. .+.+..++..+..++.+.|++++|...++...+..                     +.+
T Consensus       225 ~~g~~~~A~~~~~~al--~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~  280 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAAL--TV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------------------PGF  280 (365)
T ss_dssp             HHTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC
T ss_pred             HCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCc
Confidence            9999999999999986  32 23356788889999999999999999998887764                     345


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758          253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR  332 (354)
Q Consensus       253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  332 (354)
                      ..+|..+...|.+.|++++|...|++..+..  |+...-..           ......+..+|..+..++...|+.+.+.
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~  347 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQQQ-----------VPHPAISGNIWAALRIALSLMDQPELFQ  347 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC-----------------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCCcc-----------cchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence            7788899999999999999999999987642  22110000           0000123566899999999999999999


Q ss_pred             HHhhcC
Q 038758          333 KIFVLM  338 (354)
Q Consensus       333 ~~~~~m  338 (354)
                      ++.++-
T Consensus       348 ~~~~~~  353 (365)
T 4eqf_A          348 AANLGD  353 (365)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            988763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=1.2e-16  Score=138.66  Aligned_cols=267  Identities=9%  Similarity=-0.031  Sum_probs=172.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..+|.
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT  143 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            45566667777777777777777777653 3345566677777777777777777777777664 445667777777777


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhH---------------HHHHHHhcCchhHHHHHhccCCC--C---ChhhhHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNS---------------LIDFYAKCRYLKVSHCKFSKIKQ--K---DLVSWNAM  167 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l  167 (354)
                      ..|++++|.+.|++.    +.+...+..               .+..+...|++++|...|+++.+  |   +..++..+
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            777777777777776    222222221               13333377777777777766643  3   35566677


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758          168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ  247 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  247 (354)
                      ...+.+.|++++|.+.|+++.  .. .+.+...+..+...+.+.|++++|...++...+..                   
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------  281 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAAL--SV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-------------------  281 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHH--Hh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence            777777777777777777765  22 12234566667777777777777777776666543                   


Q ss_pred             cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758          248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  327 (354)
                        +.+...|..+...|.+.|++++|...|++..+.  .|+...            ...........+|..+..+|.+.|+
T Consensus       282 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          282 --PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRG------------PRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------------------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCC------------ccccccchhhHHHHHHHHHHHHhCC
Confidence              334566777777777777787777777777643  122100            0000011124668899999999999


Q ss_pred             hhHHHHHhhcC
Q 038758          328 IQKSRKIFVLM  338 (354)
Q Consensus       328 ~~~A~~~~~~m  338 (354)
                      +++|..++++-
T Consensus       346 ~~~A~~~~~~~  356 (368)
T 1fch_A          346 SDAYGAADARD  356 (368)
T ss_dssp             GGGHHHHHTTC
T ss_pred             hHhHHHhHHHH
Confidence            99999988743

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=1.8e-16  Score=135.21  Aligned_cols=270  Identities=10%  Similarity=-0.046  Sum_probs=211.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            45667778899999999999999998864 3466678888899999999999999999999875 557788999999999


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHH--------------HH-HHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSL--------------ID-FYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA  169 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~  169 (354)
                      ..|++++|.+.+++.    +.+...+..+              .. .+...|++++|.+.+++..+   .+...+..+..
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            999999999999998    2233333333              22 37888999999999988763   35678888999


Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      .+.+.|++++|.+.++++.  .. .+.+...+..+...+...|++++|...++...+..                     
T Consensus       181 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------  236 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAV--EL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---------------------  236 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHhccHHHHHHHHHHHH--Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------
Confidence            9999999999999999986  32 23346778888889999999999999998887764                     


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChh
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQ  329 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  329 (354)
                      +.+...|..+...+.+.|++++|.+.+++..+..  |+.....         +  +.....+..+|..+...+.+.|+++
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~---------~--~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPT---------G--EASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC----------------CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Ccccccc---------c--cchhhcCHHHHHHHHHHHHhcCCHH
Confidence            3456788899999999999999999999987642  3310000         0  0000113456888999999999999


Q ss_pred             HHHHHhhcCCC
Q 038758          330 KSRKIFVLMPH  340 (354)
Q Consensus       330 ~A~~~~~~m~~  340 (354)
                      +|.+++++..+
T Consensus       304 ~A~~~~~~~l~  314 (327)
T 3cv0_A          304 LVELTYAQNVE  314 (327)
T ss_dssp             HHHHHTTCCSH
T ss_pred             HHHHHHHHHHH
Confidence            99999997765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.3e-15  Score=129.86  Aligned_cols=261  Identities=9%  Similarity=-0.020  Sum_probs=209.0

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-C
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-D   80 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~   80 (354)
                      ++|..+++.+.+..  |+...         .+..+...+...|++++|..+++++.+.. +.+...+..+...+...| +
T Consensus        39 ~~A~~~~~~~l~~~--p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  106 (330)
T 3hym_B           39 KMCYKLTSVVMEKD--PFHAS---------CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK  106 (330)
T ss_dssp             HHHHHHHHHHHHHC--TTCTT---------THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHHHHcC--CCChh---------hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence            45666666666543  32211         55667778889999999999999998864 345677888889999999 9


Q ss_pred             hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758           81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus        81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                      +++|.+.++...+.. +.+...+..+..++...|++++|.+.|++.    +.+...+..+...|...|++++|...|++.
T Consensus       107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999998765 556778999999999999999999999998    445677888999999999999999999887


Q ss_pred             CC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC------CCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          157 KQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       157 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      .+   .+...+..+...+.+.|++++|.+.+++.......      .+.+..++..+..++.+.|++++|...++...+.
T Consensus       186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            64   35678889999999999999999999988621111      1334568888999999999999999999988876


Q ss_pred             ccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHh
Q 038758          228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPAC  298 (354)
Q Consensus       228 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~  298 (354)
                      .                     +.+...|..+...+.+.|++++|.+.|++..+.  .|+ ...+..+..++
T Consensus       266 ~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          266 I---------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI  314 (330)
T ss_dssp             S---------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred             C---------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence            5                     346788999999999999999999999998754  454 44444444444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.73  E-value=1.6e-16  Score=145.12  Aligned_cols=302  Identities=8%  Similarity=-0.014  Sum_probs=225.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|.+.++...+.+ +.+...+..+..++.
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            67788889999999999999999999875 4467778899999999999999999999999875 567788999999999


Q ss_pred             hcCChhHHHHHHHhhccccc------------------------------------------------------------
Q 038758          112 KCGRMEITSGLFEEMDQDFL------------------------------------------------------------  131 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~------------------------------------------------------------  131 (354)
                      ..|++++|...|+.+..+..                                                            
T Consensus       105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN  184 (537)
T ss_dssp             HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred             HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence            99999999999865511111                                                            


Q ss_pred             -----------hhhHHHHHHH--------hcCchhHHHHHhccCCC--CC--------hhhhHHHHHHHHhCCChhHHHH
Q 038758          132 -----------VNNSLIDFYA--------KCRYLKVSHCKFSKIKQ--KD--------LVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       132 -----------~~~~li~~~~--------~~~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~  182 (354)
                                 ....+...+.        ..|++++|..+|+++.+  |+        ..++..+...+...|++++|.+
T Consensus       185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  264 (537)
T 3fp2_A          185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV  264 (537)
T ss_dssp             CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence                       1111111111        11478888888887765  33        2246667778888999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---  249 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---  249 (354)
                      .|+...  .  ..|+...+..+...+...|+++.|...+....+.......          ..|++++|...|++..   
T Consensus       265 ~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          265 LLQESI--N--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHH--H--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH--h--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            999987  3  3455777888888899999999999999988876544322          7788888888888764   


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-------chh
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-------GSF  313 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-------~~~  313 (354)
                      +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.+         ..|       ...
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  419 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG  419 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence            3456778888888888999999999998887653 33455777788888888887776         111       122


Q ss_pred             HHHHHHHHHHhc----------CChhHHHHHhhcCCC
Q 038758          314 VWNALIDMYGRC----------GAIQKSRKIFVLMPH  340 (354)
Q Consensus       314 ~~~~li~~~~~~----------g~~~~A~~~~~~m~~  340 (354)
                      .+......+.+.          |++++|.+.|++..+
T Consensus       420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence            244445667777          888899888888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.71  E-value=7.1e-16  Score=140.79  Aligned_cols=324  Identities=9%  Similarity=-0.043  Sum_probs=232.1

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|...++.+++..  |+...         +|..+...+.+.|++++|.+.+++..+.+ +.+...+..+...+...|++
T Consensus        42 ~~A~~~~~~al~~~--p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~  109 (537)
T 3fp2_A           42 NEAIKYYQYAIELD--PNEPV---------FYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF  109 (537)
T ss_dssp             C-CHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhhC--CCCcH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence            45666677666654  33221         78888899999999999999999998865 34566788888999999999


Q ss_pred             hhHHHHHHHHHHhccCCCc------------------------------------e------------------------
Q 038758           82 RVGKDVYDYMISIKFEGNA------------------------------------C------------------------  101 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~------------------------------------~------------------------  101 (354)
                      ++|.+.|+.+....-.++.                                    .                        
T Consensus       110 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (537)
T 3fp2_A          110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY  189 (537)
T ss_dssp             HHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence            9999988633111100000                                    0                        


Q ss_pred             ------ehhhHHHHHH--------hcCChhHHHHHHHhh---ccc--------cchhhHHHHHHHhcCchhHHHHHhccC
Q 038758          102 ------VKRPLLDLFI--------KCGRMEITSGLFEEM---DQD--------FLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus       102 ------~~~~li~~~~--------~~g~~~~a~~~~~~~---~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                            ....+...+.        ..|++++|..+|+++   .|+        ..++..+...+...|++++|...|++.
T Consensus       190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~  269 (537)
T 3fp2_A          190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES  269 (537)
T ss_dssp             CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                  1111111111        114778888888877   222        224666777888889999999999877


Q ss_pred             CC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-
Q 038758          157 KQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-  233 (354)
Q Consensus       157 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  233 (354)
                      .+  |+...|..+...+...|++++|.+.|++..  ... +.+..++..+...+...|++++|...++...+....... 
T Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  346 (537)
T 3fp2_A          270 INLHPTPNSYIFLALTLADKENSQEFFKFFQKAV--DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP  346 (537)
T ss_dssp             HHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred             HhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHh--ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            63  666778888888889999999999999886  322 234667888888888999999999999888876544332 


Q ss_pred             ---------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-----CCHhhHHHHHH
Q 038758          234 ---------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-----PNTVTIVSVLP  296 (354)
Q Consensus       234 ---------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~t~~~li~  296 (354)
                               ..|++++|...+++..   +.+...|..+...+...|++++|...|+++.+..-.     .....+.....
T Consensus       347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~  426 (537)
T 3fp2_A          347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT  426 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence                     7888999998888764   445678999999999999999999999998764311     11112333345


Q ss_pred             Hhhcc----------CcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          297 ACLKL----------AALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       297 ~~~~~----------~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .+...          |+++.+         ..| +..++..+...|.+.|++++|.+.|++..+
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56666          777776         333 578899999999999999999999998775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=3.2e-17  Score=141.56  Aligned_cols=255  Identities=10%  Similarity=0.127  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +|..|..++.+.|++++|.+.|.+      .+|..+|..++.++...|++++|.++++...+.  .+++.+.+.|+.+|.
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~  105 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence            688899999999999999999965      367789999999999999999999988777663  566888999999999


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      +.|+++++.++++.  |+..+|..+...|...|++++|...|..+     ..|..+..++.+.|++++|.+.++.+.   
T Consensus       106 Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~---  175 (449)
T 1b89_A          106 KTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN---  175 (449)
T ss_dssp             ---CHHHHTTTTTC--C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT---
T ss_pred             HhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC---
Confidence            99999999998875  77789999999999999999999999987     489999999999999999999999773   


Q ss_pred             cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758          192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD  271 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  271 (354)
                           ++.+|..++.+|...|+++.|......+.                         .+......++..|.+.|++++
T Consensus       176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------------~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          176 -----STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-------------------------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             -----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-------------------------hCHhhHHHHHHHHHHCCCHHH
Confidence                 67899999999999999999966544322                         122224458888999999999


Q ss_pred             HHHHHHHHHHcCcCCCHhhHHHHHHHhhcc--CcccCc---------ccc------chhHHHHHHHHHHhcCChhHHHHH
Q 038758          272 ALDLLRDVIVANVKPNTVTIVSVLPACLKL--AALPQG---------LGT------GSFVWNALIDMYGRCGAIQKSRKI  334 (354)
Q Consensus       272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--~~~~~~---------~~~------~~~~~~~li~~~~~~g~~~~A~~~  334 (354)
                      |..+++...... +--...|+-+-.++++-  +++.+.         ++|      +...|.-+.-.|...|+++.|...
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            999998887332 22233444444444433  333222         222      467799999999999999988765


Q ss_pred             h
Q 038758          335 F  335 (354)
Q Consensus       335 ~  335 (354)
                      .
T Consensus       305 m  305 (449)
T 1b89_A          305 M  305 (449)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.70  E-value=2.1e-16  Score=137.28  Aligned_cols=277  Identities=10%  Similarity=-0.025  Sum_probs=189.3

Q ss_pred             ccccchhhhhhHhhhhhhHHHHH-HHHHhcCChhHHHH-HHHHHHhCCC---cCCcccHHHHHHHHhccCChhhHHHHHH
Q 038758           15 GVELCAFLGSQLLEVFCNWTSMM-GMYNVLGYYEEIVN-LFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYD   89 (354)
Q Consensus        15 g~~~~~~~~~~li~~~~~y~~li-~~~~~~~~~~~a~~-~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~   89 (354)
                      .+..+...|..+...+..+..+- ..+...|++++|.+ .+++......   ..+...+..+...+...|++++|...|+
T Consensus         9 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~   88 (368)
T 1fch_A            9 AIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE   88 (368)
T ss_dssp             -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccCcccHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33444454554444433222221 14556688999988 8776554321   1245678889999999999999999999


Q ss_pred             HHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hh
Q 038758           90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LV  162 (354)
Q Consensus        90 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~  162 (354)
                      .+.+.. +.+..++..+..++...|++++|.+.|++.    +.+..++..+...|...|++++|...|+++..  |+ ..
T Consensus        89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  167 (368)
T 1fch_A           89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  167 (368)
T ss_dssp             HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            999875 567778999999999999999999999987    44677888899999999999999999987653  22 22


Q ss_pred             hhHH---------------HHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          163 SWNA---------------MLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       163 ~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      .+..               .+..+...|++++|.+.|+++.  ..... ++..++..+...+.+.|++++|...++...+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  245 (368)
T 1fch_A          168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  245 (368)
T ss_dssp             GCC---------------CTTHHHHHHHHHHHHHHHHHHHH--HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH--HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2211               2333448899999999999987  32211 1467788888889999999999999888777


Q ss_pred             hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758          227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ  306 (354)
Q Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~  306 (354)
                      ..                     +.+..+|..+...+.+.|++++|...|+++.+.  .|+.                  
T Consensus       246 ~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~------------------  284 (368)
T 1fch_A          246 VR---------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY------------------  284 (368)
T ss_dssp             HC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------
T ss_pred             hC---------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------------------
Confidence            64                     345678889999999999999999999998764  3432                  


Q ss_pred             ccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       307 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                           ..++..+...|.+.|++++|.+.|++..+
T Consensus       285 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          285 -----IRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 23488899999999999999999998876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=6.8e-16  Score=134.01  Aligned_cols=229  Identities=11%  Similarity=-0.036  Sum_probs=184.6

Q ss_pred             CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHH
Q 038758           63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLID  138 (354)
Q Consensus        63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~  138 (354)
                      .+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...|++.    +.+..++..+..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            355668889999999999999999999999875 667889999999999999999999999988    445778899999


Q ss_pred             HHHhcCchhHHHHHhccCCC--CC-----------hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHH
Q 038758          139 FYAKCRYLKVSHCKFSKIKQ--KD-----------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGV  204 (354)
Q Consensus       139 ~~~~~~~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~l  204 (354)
                      .|...|++++|...|+++.+  |+           ...+..+...+.+.|++++|.+.|+++.  ..... ++..++..+
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA--HQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH--HHSCSSCCHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhCcCccCHHHHHHH
Confidence            99999999999999988764  21           1223445788899999999999999997  33221 256788889


Q ss_pred             HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758          205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV  284 (354)
Q Consensus       205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  284 (354)
                      ...+.+.|++++|...++...+..                     +.+..+|+.+...|.+.|++++|+..|++..+.  
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  276 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR---------------------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--  276 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence            999999999999999998888765                     346788999999999999999999999999865  


Q ss_pred             CCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       285 ~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      .|+.                       ..++..+...|.+.|++++|.+.|++..+
T Consensus       277 ~p~~-----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          277 QPGF-----------------------IRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             CTTC-----------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCc-----------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3442                       23478889999999999999999998876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.68  E-value=5.7e-15  Score=127.34  Aligned_cols=271  Identities=7%  Similarity=-0.001  Sum_probs=198.1

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|...++.+++..  |+...         +|..+...+...|++++|...+++..+.. +-+...+..+...+...|++
T Consensus        20 ~~A~~~~~~~l~~~--p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~   87 (359)
T 3ieg_A           20 ADALSQFHAAVDGD--PDNYI---------AYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL   87 (359)
T ss_dssp             HHHHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHhhC--cccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence            45677777777643  43221         67788888999999999999999998864 33556788899999999999


Q ss_pred             hhHHHHHHHHHHhccC---CCceehhhH------------HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758           82 RVGKDVYDYMISIKFE---GNACVKRPL------------LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK  142 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~  142 (354)
                      ++|.+.++...+.. +   .+...+..+            ...+...|++++|.+.+++.    +.+...+..+...+..
T Consensus        88 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3ieg_A           88 DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK  166 (359)
T ss_dssp             HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999998763 2   344455544            57889999999999999998    4566788889999999


Q ss_pred             cCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHH------------HHHH
Q 038758          143 CRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLS------------GVLA  206 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~------------~ll~  206 (354)
                      .|++++|...+++..+   .+...+..+...+...|++++|.+.|+...  ..  .|+. ..+.            ....
T Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~--~~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KL--DQDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hh--CccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987764   356788899999999999999999999987  32  3332 2222            2245


Q ss_pred             HhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      .+.+.|++++|...++...+.......                 .....+..+...+.+.|++++|...+++..+.. +.
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~  304 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPSVAE-----------------YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PD  304 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSSHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchH-----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc
Confidence            577888888888888887775431100                 000223445566777777777777777776542 22


Q ss_pred             CHhhHHHHHHHhhccCcccCc
Q 038758          287 NTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       287 ~~~t~~~li~~~~~~~~~~~~  307 (354)
                      +...+..+...+...|+.+++
T Consensus       305 ~~~~~~~~~~~~~~~g~~~~A  325 (359)
T 3ieg_A          305 NVNALKDRAEAYLIEEMYDEA  325 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHH
Confidence            455666677777777776665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.67  E-value=1.7e-15  Score=127.10  Aligned_cols=214  Identities=11%  Similarity=0.036  Sum_probs=161.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      |+.....|++..|+..++........+.......+.+++...|+++.|...++.   . -+|+..++..+...+...|+.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            345567799999999888765543222234556677889999999988876643   2 366777888888999999999


Q ss_pred             hHHHHHHHhh-----cc-ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758          117 EITSGLFEEM-----DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI  190 (354)
Q Consensus       117 ~~a~~~~~~~-----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  190 (354)
                      ++|.+.++++     .| +...+..+...+...|++++|.+.+++  ..+...+..+...+.+.|++++|.+.|+.+.  
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~--  157 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ--  157 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence            9999999986     13 344566677889999999999999998  4567788888899999999999999999997  


Q ss_pred             hcCCCCCcchHHHHH----HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758          191 QTDMQPNTISLSGVL----AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS  266 (354)
Q Consensus       191 ~~~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  266 (354)
                      ..  .|+.. ...+.    ..+...|++++|..+++.+.+..                     +.+...|+.+..++.+.
T Consensus       158 ~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~  213 (291)
T 3mkr_A          158 DQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------SPTLLLLNGQAACHMAQ  213 (291)
T ss_dssp             HH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------CCCHHHHHHHHHHHHHT
T ss_pred             hh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHc
Confidence            43  35543 22222    22334477788888887777663                     45778889999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 038758          267 GQVVDALDLLRDVIVA  282 (354)
Q Consensus       267 g~~~~a~~~~~~m~~~  282 (354)
                      |++++|+..|++..+.
T Consensus       214 g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDK  229 (291)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998865

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=4.9e-15  Score=124.33  Aligned_cols=225  Identities=10%  Similarity=0.050  Sum_probs=183.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC-CceehhhHHHHHHh
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG-NACVKRPLLDLFIK  112 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~  112 (354)
                      -.+.++|...|+++.|+..++.   . -+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..++..
T Consensus        38 ~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~  113 (291)
T 3mkr_A           38 VFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY  113 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            3467889999999999987654   2 35677788888999999999999999999998876545 45566777799999


Q ss_pred             cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh---HHHHHHHHhCCChhHHHHHHHHH
Q 038758          113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW---NAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      .|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+  |+....   ..++..+...|++++|..+|+++
T Consensus       114 ~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          114 DQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             TTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            9999999999999 67788899999999999999999999999874  553322   22334445568999999999999


Q ss_pred             HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758          188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG  267 (354)
Q Consensus       188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  267 (354)
                      .  .. .+.+...++.+..++.+.|++++|...+++..+..                     +.+..++..++..+...|
T Consensus       193 l--~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---------------------p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          193 A--DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---------------------SGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             H--HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTT
T ss_pred             H--Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcC
Confidence            7  43 45567788899999999999999999999988875                     346778999999999999


Q ss_pred             CHHH-HHHHHHHHHHcCcCCCHh
Q 038758          268 QVVD-ALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       268 ~~~~-a~~~~~~m~~~g~~p~~~  289 (354)
                      +.++ +.++++++.+.  .|+..
T Consensus       249 ~~~eaa~~~~~~~~~~--~P~~~  269 (291)
T 3mkr_A          249 KPPEVTNRYLSQLKDA--HRSHP  269 (291)
T ss_dssp             CCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCHHHHHHHHHHHHHh--CCCCh
Confidence            9876 67899998865  56654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.63  E-value=7.1e-16  Score=133.19  Aligned_cols=209  Identities=10%  Similarity=0.013  Sum_probs=66.6

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      +.|++++|.+.++++.      +...|..|..++.+.|++++|.+.|..      .+|..+|..++..+...|++++|++
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            5577888888888873      224788888888888888888888854      3577788888888888888888888


Q ss_pred             HHHhhc---cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758          122 LFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT  198 (354)
Q Consensus       122 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~  198 (354)
                      +++...   ++..+.+.|+.+|.+.|++++++++++.   |+..+|+.+...|...|++++|...|..+.          
T Consensus        83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------  149 (449)
T 1b89_A           83 YLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------  149 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------
T ss_pred             HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence            666552   3346778888888888888888877753   677788888888888888888888887652          


Q ss_pred             chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758          199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD  278 (354)
Q Consensus       199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  278 (354)
                       .|..+..++.+.|+++.|.+.+...                          .++.+|..++.+|+..|+++.|......
T Consensus       150 -n~~~LA~~L~~Lg~yq~AVea~~KA--------------------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~  202 (449)
T 1b89_A          150 -NFGRLASTLVHLGEYQAAVDGARKA--------------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH  202 (449)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHH--------------------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred             -hHHHHHHHHHHhccHHHHHHHHHHc--------------------------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence             6777888888777777766666543                          2556788888888888888888554433


Q ss_pred             HHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758          279 VIVANVKPNTVTIVSVLPACLKLAALPQG  307 (354)
Q Consensus       279 m~~~g~~p~~~t~~~li~~~~~~~~~~~~  307 (354)
                      +.   +.|+.  ...++..|.+.|.++++
T Consensus       203 L~---~~ad~--l~~lv~~Yek~G~~eEa  226 (449)
T 1b89_A          203 IV---VHADE--LEELINYYQDRGYFEEL  226 (449)
T ss_dssp             TT---TCHHH--HHHHHHHHHHTTCHHHH
T ss_pred             HH---hCHhh--HHHHHHHHHHCCCHHHH
Confidence            21   23332  33455555555555444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.61  E-value=9.5e-15  Score=124.41  Aligned_cols=254  Identities=9%  Similarity=-0.020  Sum_probs=192.8

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|..+++.+.+..  |+...         .|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus        38 ~~A~~~~~~~~~~~--~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~  105 (327)
T 3cv0_A           38 AEAALAFEAVCQAA--PEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  105 (327)
T ss_dssp             HHHHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhC--CCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence            45667777776643  33211         67778888999999999999999998864 34667788899999999999


Q ss_pred             hhHHHHHHHHHHhccCCCceehhhH--------------HH-HHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPL--------------LD-LFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK  142 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~  142 (354)
                      ++|.+.++...+.. +.+...+..+              .. .+...|++++|.+.+++.    +.+...+..+...|.+
T Consensus       106 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  184 (327)
T 3cv0_A          106 NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL  184 (327)
T ss_dssp             HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            99999999998764 3334444443              33 478889999999999998    4466788899999999


Q ss_pred             cCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccch
Q 038758          143 CRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA  219 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~  219 (354)
                      .|++++|.+.+++..+   .+..++..+...+.+.|++++|.+.|++..  ... +.+...+..+...+.+.|++++|..
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL--DIN-PGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999988753   356788999999999999999999999986  322 2346778888899999999999999


Q ss_pred             hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      .++...+.........+.         .....+...|..+...+.+.|+.++|..++++..
T Consensus       262 ~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          262 QLVRAIYMQVGGTTPTGE---------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHTTSCC--------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHhCCcccccccc---------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            998888765410000000         0000046688889999999999999999987654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=8.8e-14  Score=114.14  Aligned_cols=221  Identities=12%  Similarity=0.017  Sum_probs=184.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC--CC----ceehhh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE--GN----ACVKRP  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~~  105 (354)
                      .|..+-..+...|++++|...|++..+..  .+...+..+...+...|++++|.+.++...+....  ++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            56778888999999999999999999887  78889999999999999999999999999876421  22    578899


Q ss_pred             HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHH
Q 038758          106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      +..++...|++++|...|++.......    ...+.+.|++++|...+++...   .+...+..+...+...|++++|.+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  160 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK  160 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999987221111    3567788999999999988754   245678888899999999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHH
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA  262 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~  262 (354)
                      .|++..  .. .+.+...+..+..++.+.|++++|...++...+..                     +.+...|..+...
T Consensus       161 ~~~~a~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------~~~~~~~~~l~~~  216 (258)
T 3uq3_A          161 AYTEMI--KR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---------------------PNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHH
T ss_pred             HHHHHH--hc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------------HHHHHHHHHHHHH
Confidence            999997  32 23356778888899999999999999998888764                     3457788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 038758          263 FVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       263 ~~~~g~~~~a~~~~~~m~~~  282 (354)
                      +.+.|++++|...|++..+.
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=5e-12  Score=104.68  Aligned_cols=229  Identities=10%  Similarity=0.078  Sum_probs=180.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee----hhhHHHHH
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV----KRPLLDLF  110 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~  110 (354)
                      ..-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.+  ++...    |..+..++
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHH
Confidence            45567889999999999999999864 3345588889999999999999999999999843  44333    78899999


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL  183 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~  183 (354)
                      ...|++++|.+.|++.    +.+..++..+...|...|++++|...|++..+  | +...|..+...+...+++++|.+.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988    45667889999999999999999999998875  3 455666666244455699999999


Q ss_pred             HHHHHhhhcCCCCC-cchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccchhHHHHHHhcccCCC----Ccch
Q 038758          184 LDEMEMIQTDMQPN-TISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR----DVVV  255 (354)
Q Consensus       184 ~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~  255 (354)
                      |++..  .  ..|+ ...+..+..++...++   .+.|...++...+....                 .+.+    ....
T Consensus       165 ~~~a~--~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~  223 (272)
T 3u4t_A          165 FVKVL--E--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----------------GGAKYKDELIEA  223 (272)
T ss_dssp             HHHHH--H--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----------------GGGGGHHHHHHH
T ss_pred             HHHHH--H--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----------------ccccchHHHHHH
Confidence            99997  3  2344 5566667777777787   78888888777765421                 0011    1246


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       256 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      |..+...|.+.|++++|.+.|++..+.  .|+..
T Consensus       224 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~  255 (272)
T 3u4t_A          224 NEYIAYYYTINRDKVKADAAWKNILAL--DPTNK  255 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence            778888999999999999999999865  46544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=6.6e-14  Score=116.18  Aligned_cols=220  Identities=7%  Similarity=-0.083  Sum_probs=170.1

Q ss_pred             HhcCChhHHHHHHHHHHhCCC---cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           41 NVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ...|++++|...++++.+...   +.+...+..+...+...|++++|.+.|+...+.. +.+..++..+..+|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            456899999999999998642   1245668888899999999999999999999875 557888999999999999999


Q ss_pred             HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      +|.+.|++.    +.+...+..+...|.+.|++++|...|+++.+  |+.......+..+...|++++|...+++..  .
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~  172 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF--E  172 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH--h
Confidence            999999998    44677888999999999999999999988864  555555555556677799999999998775  3


Q ss_pred             cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758          192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD  271 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  271 (354)
                      . .+++...+. +...+...++.+++...+....+......                 ..+...|..+...|.+.|++++
T Consensus       173 ~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~  233 (275)
T 1xnf_A          173 K-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-----------------EHLSETNFYLGKYYLSLGDLDS  233 (275)
T ss_dssp             H-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-----------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             c-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccc-----------------ccccHHHHHHHHHHHHcCCHHH
Confidence            2 233444443 55556666666667776666554432100                 0124678889999999999999


Q ss_pred             HHHHHHHHHHc
Q 038758          272 ALDLLRDVIVA  282 (354)
Q Consensus       272 a~~~~~~m~~~  282 (354)
                      |...|++..+.
T Consensus       234 A~~~~~~al~~  244 (275)
T 1xnf_A          234 ATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=9.6e-14  Score=111.30  Aligned_cols=191  Identities=12%  Similarity=0.004  Sum_probs=109.0

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF  139 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~  139 (354)
                      +...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++++|...|++.    +.+...+..+...
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34444445555555555555555555555443 334444555555555555555555555544    2233444555555


Q ss_pred             HHhc-----------CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758          140 YAKC-----------RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL  205 (354)
Q Consensus       140 ~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll  205 (354)
                      +.+.           |++++|...|++..+  | +...|..+...+...|++++|...|++..  ...  .+...+..+.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~--~~~~~~~~la  158 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL--ALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC--CCHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcc--cchHHHHHHH
Confidence            5555           666666666665542  3 45567777778888888888888888877  444  5666777777


Q ss_pred             HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      .++...|++++|...++...+..                     +.+...+..+...+.+.|++++|...|++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQA---------------------PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            77888888888888887777654                     3356677777788888888888888877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.52  E-value=6.9e-13  Score=119.07  Aligned_cols=306  Identities=8%  Similarity=-0.077  Sum_probs=195.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhcc---C---
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----G--VRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKF---E---   97 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~---   97 (354)
                      .||.|-..+...|++++|++.|++..+.     +  ..| ...+|+.+..+|...|++++|...++...+..-   .   
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            6899999999999999999999987542     1  122 345688899999999999999999998875421   1   


Q ss_pred             C-CceehhhHHHHHHhc--CChhHHHHHHHhh---cc-ccchhhHHHHH---HHhcCchhHHHHHhccCCC--C-Chhhh
Q 038758           98 G-NACVKRPLLDLFIKC--GRMEITSGLFEEM---DQ-DFLVNNSLIDF---YAKCRYLKVSHCKFSKIKQ--K-DLVSW  164 (354)
Q Consensus        98 ~-~~~~~~~li~~~~~~--g~~~~a~~~~~~~---~~-~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~--~-~~~~~  164 (354)
                      + ...++..+..++...  +++++|.+.|++.   .| +...+..+..+   +...++.++|.+.+++..+  | +...+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~  212 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK  212 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence            1 123455555555554  5799999999987   33 34444444444   3445667778777765542  3 44555


Q ss_pred             HHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758          165 NAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------  233 (354)
Q Consensus       165 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------  233 (354)
                      ..+...+..    .+++++|.+.+++..  .. .+.+...+..+...+.+.|++++|...+....+.......       
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  289 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEAL--EK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC  289 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHH--HH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHH--Hh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            555544444    456788888888875  22 2334566777888888999999999888887766543221       


Q ss_pred             ----------------------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          234 ----------------------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       234 ----------------------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                                            ..+..++|...+++..   +.+..++..+...|...|++++|++.|++..+....|..
T Consensus       290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence                                  1233456666666543   456778888999999999999999999998876433322


Q ss_pred             h--hHHHHHH-HhhccCcccCc----------------------------------cccchhHHHHHHHHHHhcCChhHH
Q 038758          289 V--TIVSVLP-ACLKLAALPQG----------------------------------LGTGSFVWNALIDMYGRCGAIQKS  331 (354)
Q Consensus       289 ~--t~~~li~-~~~~~~~~~~~----------------------------------~~~~~~~~~~li~~~~~~g~~~~A  331 (354)
                      .  .+..+.. .....|+.+.|                                  -+.+..+|..+...|...|++++|
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A  449 (472)
T 4g1t_A          370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA  449 (472)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            1  1112111 22344554443                                  123567899999999999999999


Q ss_pred             HHHhhcCCC
Q 038758          332 RKIFVLMPH  340 (354)
Q Consensus       332 ~~~~~~m~~  340 (354)
                      .+.|++..+
T Consensus       450 ~~~y~kALe  458 (472)
T 4g1t_A          450 DEDSERGLE  458 (472)
T ss_dssp             ---------
T ss_pred             HHHHHHHHh
Confidence            999999887

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=3e-13  Score=110.97  Aligned_cols=217  Identities=7%  Similarity=-0.072  Sum_probs=176.3

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccc--------cchhh
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQD--------FLVNN  134 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~--------~~~~~  134 (354)
                      ..+..+...+...|++++|.++|+...+..  .+...+..+..++...|++++|.+.+++.   .|+        ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            457778888999999999999999999887  88889999999999999999999999987   222        46778


Q ss_pred             HHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK  212 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~  212 (354)
                      .+...|.+.|++++|...|++..+  |+       ...+.+.|++++|.+.++.+.  .. .+.+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEA--YV-NPEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHH--HC-CHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHH--Hc-CcchHHHHHHHHHHHHHhc
Confidence            888999999999999999988764  33       234666788899999999886  32 2224566777888888899


Q ss_pred             CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758          213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV  292 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  292 (354)
                      ++++|...++...+..                     +.+..+|..+...+.+.|++++|...+++..+..  |+.    
T Consensus       154 ~~~~A~~~~~~a~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~----  206 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA---------------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNF----  206 (258)
T ss_dssp             CHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----
T ss_pred             CHHHHHHHHHHHHhcC---------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHH----
Confidence            9999999888887765                     3466788889999999999999999999987643  432    


Q ss_pred             HHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          293 SVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       293 ~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                         ..+|..+...+.+.|++++|.+.+++..+
T Consensus       207 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          207 -------------------VRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                               23477888899999999999999987764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.51  E-value=1.2e-12  Score=107.21  Aligned_cols=197  Identities=6%  Similarity=-0.074  Sum_probs=127.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~  143 (354)
                      +..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.+.|++.    +.+...+..+...|...
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  118 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ  118 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence            4444444455555555555555554432 333444555555555555555555555544    22334445555555555


Q ss_pred             CchhHHHHHhccCCC----C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758          144 RYLKVSHCKFSKIKQ----K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK  218 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~  218 (354)
                      |++++|.+.|++..+    | +...+..+...+.+.|++++|.+.|++..  ... +.+...+..+...+...|++++|.
T Consensus       119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL--RLN-RNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence            666666665555433    2 34567778888889999999999998886  322 234567778888888888888888


Q ss_pred             hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                      ..++...+..                     +.+...+..+...+.+.|+.++|.+.++++.+.  .|+...+
T Consensus       196 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~  245 (252)
T 2ho1_A          196 QYYDLFAQGG---------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY  245 (252)
T ss_dssp             HHHHHHHTTS---------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred             HHHHHHHHhC---------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence            8888777654                     345667888888999999999999999999865  4555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.49  E-value=4.8e-12  Score=122.07  Aligned_cols=281  Identities=13%  Similarity=0.095  Sum_probs=199.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      ...+++|...|.+.++++++++....+-  .-+....+.++.+..+. +..+..++.+.+.+..       ...+...+.
T Consensus       989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A          989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence            4567788899999999999999984321  01223344455444433 3333333333322110       111333333


Q ss_pred             ---------------------------hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhh
Q 038758          112 ---------------------------KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW  164 (354)
Q Consensus       112 ---------------------------~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  164 (354)
                                                 ..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+.  .|...|
T Consensus      1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say 1137 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSY 1137 (1630)
T ss_pred             hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHH
Confidence                                       444455555554444 45778889999999999999999999775  577788


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----ccchhHH
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----ACGFVIC  240 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~  240 (354)
                      ..++.++.+.|++++|.+.|...+  +..  ++....+.+..+|++.++++....+.+......+....    ..|++++
T Consensus      1138 ~eVa~~~~~lGkyEEAIeyL~mAr--k~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A         1138 MEVVQAANTSGNWEELVKYLQMAR--KKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH--hhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence            889999999999999999999876  433  44434445888899998877544443211110100000    8899999


Q ss_pred             HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhH
Q 038758          241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV  314 (354)
Q Consensus       241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~  314 (354)
                      |...|...     ..|..+...|++.|++++|.+.+++..      +..+|..+-.+|...|+++.|      +..++..
T Consensus      1214 A~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~de 1282 (1630)
T 1xi4_A         1214 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 1282 (1630)
T ss_pred             HHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHH
Confidence            99999985     489999999999999999999998773      558888888899988888887      4456677


Q ss_pred             HHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          315 WNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       315 ~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      +..++..|.+.|.+++|.++++.-..
T Consensus      1283 Leeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1283 LEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88999999999999999999988765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.48  E-value=1.6e-12  Score=104.21  Aligned_cols=209  Identities=8%  Similarity=-0.087  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            45556666666777777777777666543 2334456666666666667777777766666543 334455556666666


Q ss_pred             hc-CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758          112 KC-GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEM  189 (354)
Q Consensus       112 ~~-g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  189 (354)
                      .. |++++|...+++...                          .-..| +...+..+...+.+.|++++|.+.++++. 
T Consensus        88 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-  140 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALA--------------------------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL-  140 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHT--------------------------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred             HhcCcHHHHHHHHHHHHc--------------------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence            66 666666665554311                          00012 24567778888888999999999998886 


Q ss_pred             hhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       190 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                       ... +.+...+..+...+.+.|++++|...++...+...                    ..+...+..+...+...|+.
T Consensus       141 -~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          141 -AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE--------------------VLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             -HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------------------SCCHHHHHHHHHHHHHTTCH
T ss_pred             -HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHHHhcCcH
Confidence             321 22356677788888888888888888888776542                    15666777788888899999


Q ss_pred             HHHHHHHHHHHHcCcCCCHhhHHH
Q 038758          270 VDALDLLRDVIVANVKPNTVTIVS  293 (354)
Q Consensus       270 ~~a~~~~~~m~~~g~~p~~~t~~~  293 (354)
                      ++|..+++.+.+.  .|+......
T Consensus       199 ~~a~~~~~~~~~~--~p~~~~~~~  220 (225)
T 2vq2_A          199 QAAYEYEAQLQAN--FPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHH
Confidence            9999999998754  466554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=2.5e-12  Score=105.29  Aligned_cols=192  Identities=11%  Similarity=-0.062  Sum_probs=163.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence            67888889999999999999999998864 3456778888999999999999999999998875 556778899999999


Q ss_pred             hcCChhHHHHHHHhhcc------ccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHH
Q 038758          112 KCGRMEITSGLFEEMDQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      ..|++++|.+.|++...      +...+..+...+.+.|++++|...|++..+   .+...+..+...+.+.|++++|.+
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999998732      345677888999999999999999988753   356788889999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      .++...  . ..+.+...+..+...+.+.|+.++|...++.+.+..
T Consensus       197 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          197 YYDLFA--Q-GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHH--T-TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHH--H-hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999986  3 233455667788888899999999999999888764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=1.2e-12  Score=108.56  Aligned_cols=240  Identities=8%  Similarity=-0.059  Sum_probs=179.3

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|...++.+++.+..+++....       +|..+...+...|++++|...|++..+.+ +.+...|..+...+...|++
T Consensus        22 ~~A~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           22 EVILARMEQILASRALTDDERAQ-------LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcccccCchhHH-------HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence            56778888888764322222111       67888899999999999999999998864 34677899999999999999


Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (354)
                      ++|.+.++...+.. +.+...+..+..+|...|++++|.+.|++.   .|+.......+..+...|++++|...+++...
T Consensus        94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999875 556888999999999999999999999998   45544455556666778999999999966542


Q ss_pred             --CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC--CCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758          159 --KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST  233 (354)
Q Consensus       159 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  233 (354)
                        |+......+...+...++.++|.+.++...  ....  .|+ ...+..+...+.+.|++++|...++...+..     
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----  245 (275)
T 1xnf_A          173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADA--TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----  245 (275)
T ss_dssp             HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred             cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHh--cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----
Confidence              333333347777788888899999998886  3221  111 4677888888999999999999988877653     


Q ss_pred             ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758          234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL  276 (354)
Q Consensus       234 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  276 (354)
                                       |+  .+.....++...|++++|++.+
T Consensus       246 -----------------p~--~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          246 -----------------VH--NFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -----------------CT--TCHHHHHHHHHHHHHHHC----
T ss_pred             -----------------ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence                             22  1334455677788888887766

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.45  E-value=8.2e-13  Score=107.41  Aligned_cols=198  Identities=11%  Similarity=0.049  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence            44555555556666666666666655532 2234445555555555666666666666555443 334444555555555


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      ..|++++|.+.+++..                           +....+...+..+...+.+.|++++|.+.++++.  .
T Consensus       103 ~~~~~~~A~~~~~~~~---------------------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~  153 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKAL---------------------------RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV--E  153 (243)
T ss_dssp             HTTCHHHHHHHHHHHH---------------------------HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH--H
T ss_pred             HhccHHHHHHHHHHHH---------------------------HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH--H
Confidence            5555555555544430                           0012345567777778888888888888888775  2


Q ss_pred             cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758          192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD  271 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  271 (354)
                      . .+.+...+..+...+.+.|++++|...++...+..                     +.+..+|..+...|.+.|++++
T Consensus       154 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~  211 (243)
T 2q7f_A          154 L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD---------------------PGHADAFYNAGVTYAYKENREK  211 (243)
T ss_dssp             H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTH
T ss_pred             h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHccCHHH
Confidence            2 22345567777777788888888888877776654                     3356678888888899999999


Q ss_pred             HHHHHHHHHHc
Q 038758          272 ALDLLRDVIVA  282 (354)
Q Consensus       272 a~~~~~~m~~~  282 (354)
                      |...+++..+.
T Consensus       212 A~~~~~~~~~~  222 (243)
T 2q7f_A          212 ALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999988764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.45  E-value=3.1e-12  Score=102.55  Aligned_cols=156  Identities=8%  Similarity=-0.079  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhccCC-CceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIKFEG-NACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~  109 (354)
                      .|..+...+...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++.+.+.+..| +...+..+..+
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  122 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC  122 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence            78889999999999999999999998864 34566788899999999 99999999999999832233 25678888899


Q ss_pred             HHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHHHHHHHhCCChhHHH
Q 038758          110 FIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAMLAGYALGGFREEVT  181 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~  181 (354)
                      +...|++++|...|++.    +.+...+..+...+.+.|++++|...+++..+    .+...+..+...+...|+.+.+.
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            99999999999998876    23345556666666666666666666665532    23444555555556666666666


Q ss_pred             HHHHHHH
Q 038758          182 NLLDEME  188 (354)
Q Consensus       182 ~~~~~m~  188 (354)
                      .+++.+.
T Consensus       203 ~~~~~~~  209 (225)
T 2vq2_A          203 EYEAQLQ  209 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.45  E-value=4.4e-12  Score=105.02  Aligned_cols=235  Identities=7%  Similarity=-0.098  Sum_probs=154.7

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc---cccch----hhHHH
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD---QDFLV----NNSLI  137 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~----~~~li  137 (354)
                      ...+......+...|++++|.+.++...+.. +.+...+..+..+|...|++++|...+++..   ++...    |..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3445666777889999999999999998764 4456688889999999999999999988871   22222    56677


Q ss_pred             HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcC
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKG  213 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~  213 (354)
                      ..|...|++++|...|++..+   .+...|..+...+...|++++|.+.|++..  ..  .|+ ...+..+...+...++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~--~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI--RP--TTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC--CS--SCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh--hc--CCCcHHHHHHHHHHHHHHHH
Confidence            777777777777777776543   344567777777777777777777777665  22  333 3334444413333446


Q ss_pred             ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-cCCCHh
Q 038758          214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ---VVDALDLLRDVIVAN-VKPNTV  289 (354)
Q Consensus       214 ~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~~~  289 (354)
                      +++|...++...+..                     +.+...+..+...+...|+   .++|...|++..+.. -.|+..
T Consensus       158 ~~~A~~~~~~a~~~~---------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  216 (272)
T 3u4t_A          158 YVKADSSFVKVLELK---------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY  216 (272)
T ss_dssp             HHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred             HHHHHHHHHHHHHhC---------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence            666666666665543                     2234555556666666666   666777666665431 112211


Q ss_pred             hHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758          290 TIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL  343 (354)
Q Consensus       290 t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~  343 (354)
                       -..                 -..+|..+...|.+.|++++|.+.+++..+  |+.
T Consensus       217 -~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  254 (272)
T 3u4t_A          217 -KDE-----------------LIEANEYIAYYYTINRDKVKADAAWKNILALDPTN  254 (272)
T ss_dssp             -HHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             -hHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence             000                 123578889999999999999999998876  543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=5.1e-13  Score=108.63  Aligned_cols=155  Identities=11%  Similarity=0.113  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            78888999999999999999999998864 3466778888999999999999999999999875 556778888999999


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ..|++++|...+++.    +.+...+..+...+.+.|++++|...|++..+   .+..++..+...+.+.|++++|.+.+
T Consensus       137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999998886    33444555666666666666666666655432   23445566666666666666666666


Q ss_pred             HHHH
Q 038758          185 DEME  188 (354)
Q Consensus       185 ~~m~  188 (354)
                      ++..
T Consensus       217 ~~~~  220 (243)
T 2q7f_A          217 DKAI  220 (243)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.44  E-value=1e-12  Score=115.77  Aligned_cols=268  Identities=12%  Similarity=-0.003  Sum_probs=201.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-----ccHHHHHHHHhccCChhhHHHHHHHHHHhc-----cCCCce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-----FVCPKVYKACSELKDYRVGKDVYDYMISIK-----FEGNAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~  101 (354)
                      .+..+-..+...|++++|...|++..+.+  |+.     ..+..+...+...|++++|.+.++...+..     .+....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            45567778899999999999999998863  433     367888888999999999999999987651     133456


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCc-----------------hhHHHHHhc
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRY-----------------LKVSHCKFS  154 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~  154 (354)
                      ++..+...|...|++++|.+.+++.          +....++..+...|...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7888999999999999999999987          2234477888899999999                 999988887


Q ss_pred             cCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhh
Q 038758          155 KIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIH  221 (354)
Q Consensus       155 ~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~  221 (354)
                      +..+     .    ...++..+...+...|++++|.+.+++..+.... .++    ...+..+...+...|++++|...+
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            6542     1    2346788888999999999999999988621111 111    236778888899999999999998


Q ss_pred             hHhhhhccccccccchhHHHHHHhcccCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-CCHhhHHHHHHHh
Q 038758          222 GYVLRHHIHLSTACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPAC  298 (354)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~  298 (354)
                      +...+....                 ...  ....++..+...+...|++++|...+++..+..-. ++..         
T Consensus       287 ~~al~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------  340 (411)
T 4a1s_A          287 KRTLALAVE-----------------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI---------  340 (411)
T ss_dssp             HHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------
T ss_pred             HHHHHHHHH-----------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH---------
Confidence            877665431                 001  12456778889999999999999999998753111 1111         


Q ss_pred             hccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          299 LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                                 ....++..+...|.+.|++++|.+.+++..
T Consensus       341 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          341 -----------GEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             -----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                       012347778888889999999988888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.44  E-value=1.8e-12  Score=103.80  Aligned_cols=189  Identities=10%  Similarity=-0.026  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+..+..++.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            46677788899999999999999998864 3466678888899999999999999999999875 556778999999999


Q ss_pred             hc-----------CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhC
Q 038758          112 KC-----------GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALG  174 (354)
Q Consensus       112 ~~-----------g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~  174 (354)
                      ..           |++++|...|++.    +.+...+..+...|...|++++|+..|++..+  .+...+..+...+...
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~  164 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSM  164 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Confidence            99           9999999999987    44567888999999999999999999987643  5667788899999999


Q ss_pred             CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          175 GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       175 ~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      |++++|...|+...  .  ..| +...+..+...+.+.|+.++|...++....
T Consensus       165 g~~~~A~~~~~~al--~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          165 GRLDEALAQYAKAL--E--QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             TCHHHHHHHHHHHH--H--HSTTCHHHHHHHHHHHTC----------------
T ss_pred             CCHHHHHHHHHHHH--H--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999999987  3  234 456677888889999999999988876543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=1.7e-12  Score=110.47  Aligned_cols=269  Identities=11%  Similarity=0.026  Sum_probs=199.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC-CCcee
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE-GNACV  102 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~  102 (354)
                      +...-..+...|++++|...|++..+.+  |+     ...+..+...+...|+++.|.+.++...+..    .. ....+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3445667889999999999999998863  43     3567788889999999999999999876541    11 23557


Q ss_pred             hhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCc--------------------hhHHHHH
Q 038758          103 KRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRY--------------------LKVSHCK  152 (354)
Q Consensus       103 ~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~--------------------~~~a~~~  152 (354)
                      +..+...+...|++++|...+++.    +.      ...++..+...|...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            888899999999999999999987    11      13377888899999999                    8999888


Q ss_pred             hccCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC---CCCcchHHHHHHHhhhhcCccccchh
Q 038758          153 FSKIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM---QPNTISLSGVLAACAQVKGVKLGKAI  220 (354)
Q Consensus       153 ~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~  220 (354)
                      +++...     +    ....+..+...+...|++++|.+.+++..+.....   .....++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            876542     1    23467788888999999999999999875211111   11123677788888999999999998


Q ss_pred             hhHhhhhccccccccchhHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-CCHhhHHHHHHH
Q 038758          221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPA  297 (354)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~  297 (354)
                      ++...+....                 ...+  ...++..+...+...|++++|...+++..+..-. ++..        
T Consensus       246 ~~~al~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------  300 (338)
T 3ro2_A          246 YKKTLLLARQ-----------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI--------  300 (338)
T ss_dssp             HHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------
T ss_pred             HHHHHHHHHh-----------------hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH--------
Confidence            8877654331                 0011  1456778888999999999999999988753211 1111        


Q ss_pred             hhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          298 CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                  ....++..+...|.+.|++++|.+.+++..+
T Consensus       301 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          301 ------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                        1123477889999999999999999987643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.41  E-value=1.5e-10  Score=104.53  Aligned_cols=295  Identities=11%  Similarity=-0.015  Sum_probs=181.4

Q ss_pred             hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceeh
Q 038758           32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVK  103 (354)
Q Consensus        32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~  103 (354)
                      .+..|-..|..    .+++++|.+.|++..+.|   +...+..|-..|..    .+++++|.+.|+...+.|   +...+
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  150 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ  150 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44455555555    677777777777776654   34445555555555    567777777777776654   34456


Q ss_pred             hhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHH
Q 038758          104 RPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYA  172 (354)
Q Consensus       104 ~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~  172 (354)
                      ..|...|..    .++.++|.+.|++.  ..+...+..|...|..    .++.++|.+.|++..+ .+...+..+...|.
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~  230 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY  230 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666666665    66777777777766  3345556666666666    6777777777765543 34555666666666


Q ss_pred             h----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcccccc--------cc-
Q 038758          173 L----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLST--------AC-  235 (354)
Q Consensus       173 ~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~--------~~-  235 (354)
                      .    .+++++|.++|+...  ..|.   ...+..+-..+..    .++.++|...++...+.+.....        .. 
T Consensus       231 ~g~g~~~~~~~A~~~~~~a~--~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~  305 (490)
T 2xm6_A          231 FGIGVTQDYTQSRVLFSQSA--EQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA  305 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHH--TTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCB
T ss_pred             cCCCCCCCHHHHHHHHHHHH--HCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence            5    667777777777765  4332   2334444444444    56777777777766655432211        22 


Q ss_pred             ----chhHHHHHHhcccCC-CCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc----cCc
Q 038758          236 ----GFVICSCSVFNQLST-RDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----LAA  303 (354)
Q Consensus       236 ----~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~  303 (354)
                          ++.++|...|++... .+...+..+-..|.+.|   +.++|++.|++..+.|   +...+..+-..|..    .++
T Consensus       306 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          306 EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence                567777777766542 24455666666666655   6777777777777653   34455555555555    455


Q ss_pred             ccCc--------cccchhHHHHHHHHHHh----cCChhHHHHHhhcCCC
Q 038758          304 LPQG--------LGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPH  340 (354)
Q Consensus       304 ~~~~--------~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~  340 (354)
                      .+++        -..+...+..|...|.+    .+++++|.+.|++..+
T Consensus       383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            5444        12245667777777777    7888888888877655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.41  E-value=3.8e-12  Score=111.63  Aligned_cols=231  Identities=11%  Similarity=0.020  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC-CCce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE-GNAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~  101 (354)
                      .+...-..+...|++++|...|++..+.+  |+     ...+..+...+...|+++.|...++...+..    .. ....
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34556677889999999999999998863  33     2467788889999999999999999876542    11 2255


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh----c------cccchhhHHHHHHHhcCc--------------------hhHHHH
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM----D------QDFLVNNSLIDFYAKCRY--------------------LKVSHC  151 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~----~------~~~~~~~~li~~~~~~~~--------------------~~~a~~  151 (354)
                      ++..+...|...|++++|...+++.    +      ....++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            7888899999999999999999987    1      124477888899999999                    898888


Q ss_pred             HhccCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccc
Q 038758          152 KFSKIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGK  218 (354)
Q Consensus       152 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~  218 (354)
                      .+++...     +    ...++..+...+...|++++|.+.+++..+.... .++    ..++..+...+...|++++|.
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            8876542     1    2346788888999999999999999988621111 111    236778888899999999999


Q ss_pred             hhhhHhhhhccccccccchhHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                      ..++...+.....                 ..+  ...++..+...|.+.|++++|...+++..+.
T Consensus       248 ~~~~~al~~~~~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          248 EYYKKTLLLARQL-----------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             HHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-----------------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            9988776553310                 011  1456788889999999999999999988653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.41  E-value=1.3e-11  Score=107.07  Aligned_cols=230  Identities=8%  Similarity=-0.052  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .|+.+-..+.+.|++++|+..+++..+.. +-+...|+.+...+...|+ +++|.+.|+...+.. +-+...|..+..++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            78888888999999999999999999864 2345668888889999996 999999999999876 66788999999999


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHh-CCChhHH--
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYAL-GGFREEV--  180 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~-~~~~~~a--  180 (354)
                      ...|++++|...|++.    +.+...|..+..++.+.|++++|+..|+++.+  | +...|+.+...+.+ .|..++|  
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~  256 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  256 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence            9999999999999998    55778899999999999999999999998874  3 56789999999998 6665887  


Q ss_pred             ---HHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhc--CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758          181 ---TNLLDEMEMIQTDMQPN-TISLSGVLAACAQVK--GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV  254 (354)
Q Consensus       181 ---~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  254 (354)
                         ++.|+...  .  +.|+ ...|..+...+.+.|  +.+++...+..+ +..                     ..+..
T Consensus       257 ~~el~~~~~Al--~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~---------------------p~~~~  310 (382)
T 2h6f_A          257 EREVQYTLEMI--K--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS---------------------HSSPY  310 (382)
T ss_dssp             HHHHHHHHHHH--H--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT---------------------CCCHH
T ss_pred             HHHHHHHHHHH--H--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC---------------------CCCHH
Confidence               47787776  2  3454 456777777777766  466666665554 221                     34567


Q ss_pred             hHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCcCCCHhhH
Q 038758          255 VWNSIISAFVRSG---------QVVDALDLLRDV-IVANVKPNTVTI  291 (354)
Q Consensus       255 ~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~g~~p~~~t~  291 (354)
                      .+..+...|.+.|         ..++|+++|+++ .+  +.|...-|
T Consensus       311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~  355 (382)
T 2h6f_A          311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEY  355 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence            7888888888874         358999999998 54  35655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.37  E-value=4.7e-11  Score=99.00  Aligned_cols=218  Identities=10%  Similarity=-0.035  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      ++..+-..+...|++++|.+.|++..+.+   +...+..+...+..    .+++++|.+.|+...+.+   +...+..+.
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            45567777889999999999999998833   44567778888888    999999999999998876   677888899


Q ss_pred             HHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHHh---
Q 038758          108 DLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYAL---  173 (354)
Q Consensus       108 ~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~---  173 (354)
                      ..|..    .+++++|.+.|++.  ..+...+..+...|..    .+++++|...|++..+ .+...+..+...|..   
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~  161 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  161 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence            99999    99999999999987  3456677888888888    9999999999987654 355667777788887   


Q ss_pred             -CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhccccccccchhHHHHHHhccc
Q 038758          174 -GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL  248 (354)
Q Consensus       174 -~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (354)
                       .+++++|.+.|+...  ..+   +...+..+-..+..    .++.++|...++...+.+                    
T Consensus       162 ~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------------------  216 (273)
T 1ouv_A          162 TPKDLKKALASYDKAC--DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------------------  216 (273)
T ss_dssp             SCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------------------
T ss_pred             CCCCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------------------
Confidence             899999999999887  543   34566666777777    778888888877766643                    


Q ss_pred             CCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 038758          249 STRDVVVWNSIISAFVR----SGQVVDALDLLRDVIVAN  283 (354)
Q Consensus       249 ~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  283 (354)
                         +...+..+-..|.+    .++.++|.+.|++..+.|
T Consensus       217 ---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          217 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence               24567777788888    899999999999998775

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.37  E-value=2.3e-10  Score=103.27  Aligned_cols=296  Identities=7%  Similarity=-0.047  Sum_probs=227.6

Q ss_pred             hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceeh
Q 038758           32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVK  103 (354)
Q Consensus        32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~  103 (354)
                      ++..|-..|..    .+++++|...|++..+.|   +...+..|-..|..    .++.++|.+.|+...+.|   +...+
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            55556666666    899999999999998875   45567777777877    889999999999998765   55667


Q ss_pred             hhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHH
Q 038758          104 RPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYA  172 (354)
Q Consensus       104 ~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~  172 (354)
                      ..|...|..    .+++++|.+.|++.  ..+...+..|...|..    .++.++|.+.|++..+ .+...+..+...|.
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~  194 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYS  194 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            778888888    88999999999987  3455667778888887    7899999999987654 46777888888888


Q ss_pred             h----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcccccc-----------
Q 038758          173 L----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLST-----------  233 (354)
Q Consensus       173 ~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~-----------  233 (354)
                      .    .+++++|.++|+...  ..|   +...+..+...+..    .++.++|...++...+.+.....           
T Consensus       195 ~g~g~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~  269 (490)
T 2xm6_A          195 RGLGVERNDAISAQWYRKSA--TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL  269 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCcCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence            7    899999999999987  554   34456666666664    67889999999888776543222           


Q ss_pred             -ccchhHHHHHHhcccCC-CCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC---c
Q 038758          234 -ACGFVICSCSVFNQLST-RDVVVWNSIISAFVRS-----GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---A  303 (354)
Q Consensus       234 -~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---~  303 (354)
                       ..++.++|...|++... .+...+..+-..|...     ++.++|...|++..+.|   +...+..+-..+...|   +
T Consensus       270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence             26889999999988754 3556677777888877     89999999999998875   3344555555555444   3


Q ss_pred             ccCc--------cccchhHHHHHHHHHHh----cCChhHHHHHhhcCCCC
Q 038758          304 LPQG--------LGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPHK  341 (354)
Q Consensus       304 ~~~~--------~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~  341 (354)
                      .+.+        -..+...+..|...|..    .+++++|.+.|++..+.
T Consensus       347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            4443        22467788889899988    89999999999987653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=2.5e-12  Score=108.47  Aligned_cols=227  Identities=11%  Similarity=0.039  Sum_probs=160.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc------c-C
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK------F-E   97 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~-~   97 (354)
                      +|..+...+...|++++|..+++++.+.       ..+.....+..+...+...|++++|.+.++...+..      - +
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            6788899999999999999999998874       223345568888889999999999999999988652      1 2


Q ss_pred             CCceehhhHHHHHHhcCChhHHHHHHHhhc------------cccchhhHHHHHHHhcCchhHHHHHhccCCC-------
Q 038758           98 GNACVKRPLLDLFIKCGRMEITSGLFEEMD------------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------  158 (354)
Q Consensus        98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------  158 (354)
                      ....++..+...|...|++++|.+.|++..            .....+..+...|...|++++|...|++..+       
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence            245678889999999999999999999871            1234567788889999999999988876642       


Q ss_pred             C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc-------CCCCCcchHHHHHHHhh-------hhcCccccchh
Q 038758          159 K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-------DMQPNTISLSGVLAACA-------QVKGVKLGKAI  220 (354)
Q Consensus       159 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~p~~~t~~~ll~~~~-------~~~~~~~a~~~  220 (354)
                      +    ...++..+...+.+.|++++|.+.++++.  ..       ...+...........+.       ..+.+..+...
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL--TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            1    23457778888999999999999998886  31       22233322222222222       22334444444


Q ss_pred             hhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      +.......                     ..+..+|..+...|.+.|++++|.+.|++..+
T Consensus       267 ~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVDS---------------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------C---------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCCC---------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            43333221                     22456788899999999999999999998875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.33  E-value=3.4e-11  Score=104.51  Aligned_cols=223  Identities=10%  Similarity=0.046  Sum_probs=177.6

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHHHHhh----ccccchhhHHHHHH
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEM----DQDFLVNNSLIDFY  140 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~----~~~~~~~~~li~~~  140 (354)
                      ..|..+...+...|++++|.+.++...+.. +-+...|+.+..++...|+ +++|+..|++.    +.+...|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            356777788889999999999999999875 5677889999999999997 99999999998    55678999999999


Q ss_pred             HhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhh-hcCcc
Q 038758          141 AKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQ-VKGVK  215 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~-~~~~~  215 (354)
                      .+.|++++|+..|++...   .+...|..+..++.+.|++++|++.|+.+.  ..  .| +...|+.+..++.+ .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al--~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL--KE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH--Hh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999998874   466789999999999999999999999997  32  34 46678888888888 55546


Q ss_pred             ccc-----hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHHcCcCCCH
Q 038758          216 LGK-----AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG--QVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       216 ~a~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      +|.     ..+....+..                     +.+...|+.+...+.+.|  +.++|++.++++ +  ..|+.
T Consensus       253 eA~~~~el~~~~~Al~l~---------------------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~  308 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV---------------------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSS  308 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCC
T ss_pred             HHHHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCC
Confidence            663     5565555543                     346678988888888888  689999999887 2  24443


Q ss_pred             hhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcC---------ChhHHHHHhhcC-CC
Q 038758          289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCG---------AIQKSRKIFVLM-PH  340 (354)
Q Consensus       289 ~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~  340 (354)
                      .                       ..+..+...|.+.|         .+++|.+++++. .+
T Consensus       309 ~-----------------------~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          309 P-----------------------YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             H-----------------------HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred             H-----------------------HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            2                       23667777777764         358899999998 55

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.32  E-value=2e-10  Score=95.15  Aligned_cols=219  Identities=10%  Similarity=-0.061  Sum_probs=169.1

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLI  137 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li  137 (354)
                      +...+..+...+...|++++|.+.|+...+.   .+...+..+...|..    .+++++|.+.|++.  ..+...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4456777778888999999999999999873   345678889999999    99999999999987  34667778888


Q ss_pred             HHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758          138 DFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       138 ~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~  208 (354)
                      ..|..    .+++++|...|++..+ .+...+..+...|..    .+++++|.+.|+...  ..+   +...+..+-..+
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--hcC---cHHHHHHHHHHH
Confidence            89999    9999999999987754 466778888888998    999999999999987  554   445566666666


Q ss_pred             hh----hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038758          209 AQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR----SGQVVDALDLLRDVI  280 (354)
Q Consensus       209 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~  280 (354)
                      ..    .++.++|...++...+.+                       +...+..+-..|..    .+++++|+..|++..
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDLK-----------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC  213 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC-----------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            66    777778877777666543                       34667788888888    999999999999998


Q ss_pred             HcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHh----cCChhHHHHHhhcCCC
Q 038758          281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPH  340 (354)
Q Consensus       281 ~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~  340 (354)
                      +.+  | ...                        +..+...|.+    .|++++|.+.|++..+
T Consensus       214 ~~~--~-~~a------------------------~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          214 ELE--N-GGG------------------------CFNLGAMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HTT--C-HHH------------------------HHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             hCC--C-HHH------------------------HHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence            764  2 333                        4445555555    6666666666665544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.31  E-value=3.1e-10  Score=103.46  Aligned_cols=105  Identities=10%  Similarity=-0.045  Sum_probs=51.8

Q ss_pred             ccchhHHHHHHhcccC--CCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHH-HhhccCcccCc
Q 038758          234 ACGFVICSCSVFNQLS--TRDV--VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLP-ACLKLAALPQG  307 (354)
Q Consensus       234 ~~~~~~~a~~~~~~~~--~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~-~~~~~~~~~~~  307 (354)
                      +.|++++|..+|++..  .|+.  ..|..++..+.+.|+.++|.++|++..+.  .|+ ...|..... .+...|+.+.+
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence            4455555555555543  2221  24555555555555666666666555533  222 111111111 11234444443


Q ss_pred             ---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          308 ---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       308 ---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                               ..| +...|..++..+.+.|+.++|..+|++...
T Consensus       411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence                     223 456666666666666777777776666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.30  E-value=1.9e-10  Score=97.27  Aligned_cols=110  Identities=11%  Similarity=0.079  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHhCCCcCCcccHHHHHHHHhc-------cCCh-------hhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSE-------LKDY-------RVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      ++|..+|++..... +-+...|..+...+..       .|++       ++|..+|+...+.-.+-+...|..+...+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56667777776642 3344456666655542       3664       6777777776652113344466677777777


Q ss_pred             cCChhHHHHHHHhh---ccc-cc-hhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          113 CGRMEITSGLFEEM---DQD-FL-VNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       113 ~g~~~~a~~~~~~~---~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      .|++++|.++|++.   .|+ .. +|..+...+.+.|++++|..+|++..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            77777777777765   222 22 45555555555555555555555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=5.2e-11  Score=103.95  Aligned_cols=294  Identities=8%  Similarity=-0.007  Sum_probs=192.8

Q ss_pred             hhhHHHHHHHHHhccc----cchhhhhhHhhhhhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCcCCc----ccH
Q 038758            2 ELGIQVHAHLIVCGVE----LCAFLGSQLLEVFCNWTSMMGMYNVLG-----YYEEIVNLFYLMIDKGVRPDH----FVC   68 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~y~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~----~~~   68 (354)
                      ++|..+.+++.+.--.    ++...|-.++..  .|..++..+....     ......+.++.+.......+.    ..+
T Consensus        29 ~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~--r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~  106 (383)
T 3ulq_A           29 PDAEYLRREIKQELDQMEEDQDLHLYYSLMEF--RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN  106 (383)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH--HHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHHHHHH--HHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence            4677777777665322    223332333322  4444444444333     111222666665442211111    011


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhcc-CC----CceehhhHHHHHHhcCChhHHHHHHHhh----c-------cccch
Q 038758           69 PKVYKACSELKDYRVGKDVYDYMISIKF-EG----NACVKRPLLDLFIKCGRMEITSGLFEEM----D-------QDFLV  132 (354)
Q Consensus        69 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~----~-------~~~~~  132 (354)
                      ......+...|++++|.+.++...+.-- .+    ...++..+..+|...|+++.|...+++.    +       ....+
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  186 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC  186 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            1244556788999999999999986511 12    3457888999999999999999999887    1       12346


Q ss_pred             hhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCC-CCCcch
Q 038758          133 NNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDM-QPNTIS  200 (354)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~-~p~~~t  200 (354)
                      ++.+...|...|++++|...|++..+     ++    ..++..+...|...|++++|.+.+++....  ..+. +....+
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  266 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA  266 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            77888999999999999999987653     12    246888999999999999999999988610  1133 333567


Q ss_pred             HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCC---HHHHHHHH
Q 038758          201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQ---VVDALDLL  276 (354)
Q Consensus       201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~a~~~~  276 (354)
                      +..+...+.+.|++++|...++...+....                 ...| ....++.+-..+...|+   ..+|+.++
T Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~  329 (383)
T 3ulq_A          267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQK-----------------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL  329 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            888888999999999999998877654321                 1111 12235667777888888   77777777


Q ss_pred             HHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          277 RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       277 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ++.   +..|+..                       .++..+...|.+.|++++|.+.+++..+
T Consensus       330 ~~~---~~~~~~~-----------------------~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          330 ESK---MLYADLE-----------------------DFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHT---TCHHHHH-----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHC---cCHHHHH-----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            665   2233222                       2367788899999999999998886543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=3.8e-11  Score=101.18  Aligned_cols=236  Identities=12%  Similarity=0.068  Sum_probs=157.1

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHh-------ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISI-------KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL  136 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~l  136 (354)
                      +...+..+...+...|++++|..+++.+.+.       ..+....++..+...|...|++++|...+++.          
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------   95 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA----------   95 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------
Confidence            3445777888888999999999999998874       22334566788888888899999998887763          


Q ss_pred             HHHHHhcCchhHHHHHhccC--C--CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc----CCCC-CcchHHHHHHH
Q 038758          137 IDFYAKCRYLKVSHCKFSKI--K--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT----DMQP-NTISLSGVLAA  207 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~p-~~~t~~~ll~~  207 (354)
                                   .++++..  .  .....++..+...+...|++++|.+.+++......    +-.| ....+..+...
T Consensus        96 -------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  162 (311)
T 3nf1_A           96 -------------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL  162 (311)
T ss_dssp             -------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence                         2232222  1  12345677788888888888888888887762110    2222 34556777777


Q ss_pred             hhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 038758          208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-  282 (354)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  282 (354)
                      +...|++++|...++...+...                 ...    .....++..+...|...|++++|...++++.+. 
T Consensus       163 ~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          163 CQNQGKYEEVEYYYQRALEIYQ-----------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHH-----------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHH-----------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            8888888888888877665411                 110    113456888899999999999999999998753 


Q ss_pred             ------CcCCCHhhHHHHHHHhhc-------cCcccCc----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          283 ------NVKPNTVTIVSVLPACLK-------LAALPQG----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       283 ------g~~p~~~t~~~li~~~~~-------~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                            ...|...........+..       .+.+..+          ...+..++..+...|.+.|++++|.+.|++..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                  222333222223333322       2222222          12346788999999999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.28  E-value=2e-09  Score=104.37  Aligned_cols=166  Identities=11%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +|..+-.++...|++++|.+.|.+.      -|...|..++..+.+.|++++|.+.+....+..  +++...+.++.+|+
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence            7888888888888888888888553      356667778888888888888888887766543  44444445888888


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ  191 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  191 (354)
                      +.+++++...+..  .++...|..+...|...|++++|...|...     ..|..+...+++.|++++|.+.+++..   
T Consensus      1179 Kl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A         1179 KTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred             hhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence            8888776555443  233445556777777888888888888774     377777888888888888877777664   


Q ss_pred             cCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758          192 TDMQPNTISLSGVLAACAQVKGVKLGKAI  220 (354)
Q Consensus       192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  220 (354)
                           +..+|..+-.+|...|++..|...
T Consensus      1249 -----n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1249 -----STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             -----CHHHHHHHHHHHhhhhHHHHHHHH
Confidence                 334555555555555554444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=2.4e-10  Score=96.62  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758           32 NWTSMMGMYNV-------LGYY-------EEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKF   96 (354)
Q Consensus        32 ~y~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~   96 (354)
                      .|..+...+..       .|++       ++|..+|++..+. +.|+ ...|..+...+...|++++|.++|+...+.  
T Consensus        52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--  128 (308)
T 2ond_A           52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--  128 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--
T ss_pred             HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence            77777777653       4776       8999999999873 2444 447888888889999999999999999874  


Q ss_pred             CCC-ce-ehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           97 EGN-AC-VKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        97 ~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .|+ .. +|..+...+.+.|++++|..+|++.
T Consensus       129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A          129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            454 33 7888999999999999999999886

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.25  E-value=2.9e-11  Score=106.37  Aligned_cols=259  Identities=10%  Similarity=0.038  Sum_probs=189.8

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CcCCcccHHHHHHHHh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----G-VRPDHFVCPKVYKACS   76 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~   76 (354)
                      ++|...++..++.+  |+...   ...  ..|..+...+...|++++|...+++..+.    + .+.....+..+...+.
T Consensus        65 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           65 RAGVAFFQAAIQAG--TEDLR---TLS--AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--ccChh---HHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            45677777777753  32110   000  05778888899999999999999988654    1 1234456778888899


Q ss_pred             ccCChhhHHHHHHHHHHhc-----cCCCceehhhHHHHHHhcCC-----------------hhHHHHHHHhh--------
Q 038758           77 ELKDYRVGKDVYDYMISIK-----FEGNACVKRPLLDLFIKCGR-----------------MEITSGLFEEM--------  126 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~--------  126 (354)
                      ..|++++|.+.++...+..     .+....++..+...|...|+                 +++|.+.+++.        
T Consensus       138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~  217 (411)
T 4a1s_A          138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG  217 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999987652     12234578889999999999                 99999988876        


Q ss_pred             --ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC
Q 038758          127 --DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ  195 (354)
Q Consensus       127 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  195 (354)
                        ......+..+...|...|++++|...|++..+     ++    ...+..+...|...|++++|.+.+++.........
T Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  297 (411)
T 4a1s_A          218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG  297 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence              12234777888999999999999999987764     12    23688889999999999999999998762111111


Q ss_pred             ---CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHH
Q 038758          196 ---PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA  272 (354)
Q Consensus       196 ---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  272 (354)
                         ....++..+...+...|++++|...++...+.......               ......++..+...|.+.|++++|
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD---------------RIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHHHHHhccHHHH
Confidence               11456777888889999999999998877665321000               001234677888999999999999


Q ss_pred             HHHHHHHHHc
Q 038758          273 LDLLRDVIVA  282 (354)
Q Consensus       273 ~~~~~~m~~~  282 (354)
                      .+.|++..+.
T Consensus       363 ~~~~~~al~~  372 (411)
T 4a1s_A          363 LKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.25  E-value=2.5e-11  Score=108.92  Aligned_cols=209  Identities=10%  Similarity=-0.030  Sum_probs=171.3

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh-hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE  124 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  124 (354)
                      ++++...+++..... +.+...+..+...+...|++ ++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556666776655432 34667788888899999999 99999999999875 5567889999999999999999999999


Q ss_pred             hh---ccccchhhHHHHHHHhc---------CchhHHHHHhccCCC---CChhhhHHHHHHHHhC--------CChhHHH
Q 038758          125 EM---DQDFLVNNSLIDFYAKC---------RYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG--------GFREEVT  181 (354)
Q Consensus       125 ~~---~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------~~~~~a~  181 (354)
                      +.   .|+...+..+...|...         |++++|...|++..+   .+...|..+..+|...        |++++|.
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            87   56667888899999999         999999999988763   3567888899999888        9999999


Q ss_pred             HHHHHHHhhhcCC--CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHH
Q 038758          182 NLLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI  259 (354)
Q Consensus       182 ~~~~~m~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  259 (354)
                      +.|++..  ....  .-+...|..+..++...|++++|...++...+..                     +.+...+..+
T Consensus       242 ~~~~~al--~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------p~~~~a~~~l  298 (474)
T 4abn_A          242 SAYAQAE--KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---------------------PAWPEPQQRE  298 (474)
T ss_dssp             HHHHHHH--HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHH
T ss_pred             HHHHHHH--HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHH
Confidence            9999997  3211  1367788889999999999999999999888765                     3355678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q 038758          260 ISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       260 i~~~~~~g~~~~a~~~~~~m  279 (354)
                      ...+...|++++|++.+.++
T Consensus       299 ~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          299 QQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            88899999999998766554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.25  E-value=6.6e-11  Score=100.58  Aligned_cols=259  Identities=11%  Similarity=0.075  Sum_probs=188.2

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCc-CCcccHHHHHHHHh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----GVR-PDHFVCPKVYKACS   76 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~   76 (354)
                      ++|...++...+..  |+...   ...  ..|..+...+...|++++|.+.+++..+.    +-. .....+..+...+.
T Consensus        22 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           22 RAGVSFFEAAVQVG--TEDLK---TLS--AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC--cccHH---HHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            46777888877763  33210   000  15778888899999999999999987553    212 22456778888899


Q ss_pred             ccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCC--------------------hhHHHHHHHhh-----
Q 038758           77 ELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGR--------------------MEITSGLFEEM-----  126 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~-----  126 (354)
                      ..|++++|.+.++...+..-. ++    ..++..+...+...|+                    +++|.+.+++.     
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~  174 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT  174 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998765311 22    3378888999999999                    99999888876     


Q ss_pred             -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758          127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT  192 (354)
Q Consensus       127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  192 (354)
                           ......+..+...+...|++++|...+++..+     ++    ..++..+...+...|++++|.+.+++......
T Consensus       175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  254 (338)
T 3ro2_A          175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  254 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                 12234677888999999999999999987753     12    23678888899999999999999998752111


Q ss_pred             CC--CC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          193 DM--QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       193 ~~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                      ..  .+ ...++..+...+...|++++|...++...+.......               ......++..+...|.+.|++
T Consensus       255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~  319 (338)
T 3ro2_A          255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD---------------RIGEGRACWSLGNAYTALGNH  319 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred             hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHcCCh
Confidence            11  11 1456777788889999999999988877664321000               001134677888999999999


Q ss_pred             HHHHHHHHHHHHc
Q 038758          270 VDALDLLRDVIVA  282 (354)
Q Consensus       270 ~~a~~~~~~m~~~  282 (354)
                      ++|...+++..+.
T Consensus       320 ~~A~~~~~~a~~~  332 (338)
T 3ro2_A          320 DQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.25  E-value=1.2e-10  Score=90.31  Aligned_cols=155  Identities=8%  Similarity=0.005  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..|.+.|++++|.+.|++..+.. +-+...+..+...+...|+++.|...+....+.. +.+...+..+...+.
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence            57888888999999999999999988764 3355668888888999999999999999888764 555667778888889


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ..++++.+...+.+.    +.+...+..+...|.+.|++++|++.|++..+   .+..+|..+...|.+.|++++|.+.|
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999988886    44566777888888888888888888887653   35667888888888888888888888


Q ss_pred             HHHH
Q 038758          185 DEME  188 (354)
Q Consensus       185 ~~m~  188 (354)
                      ++..
T Consensus       165 ~~al  168 (184)
T 3vtx_A          165 KKAL  168 (184)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.25  E-value=8.3e-11  Score=103.03  Aligned_cols=283  Identities=10%  Similarity=0.044  Sum_probs=198.6

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCcC-CcccHHHHHHHHh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----GVRP-DHFVCPKVYKACS   76 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~   76 (354)
                      ++|...++...+.+  |+...   .+.  ..|..+...+...|++++|...+++....    +-.| ....+..+...+.
T Consensus        26 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           26 RAGVSFFEAAVQVG--TEDLK---TLS--AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--cccHH---HHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            46777777777763  32110   000  15778888999999999999999987543    2122 2446777888899


Q ss_pred             ccCChhhHHHHHHHHHHhcc-CCC----ceehhhHHHHHHhcCC--------------------hhHHHHHHHhh-----
Q 038758           77 ELKDYRVGKDVYDYMISIKF-EGN----ACVKRPLLDLFIKCGR--------------------MEITSGLFEEM-----  126 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~-----  126 (354)
                      ..|++++|...++...+... .++    ..++..+...|...|+                    +++|.+.+++.     
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876521 122    4478888999999999                    99999988876     


Q ss_pred             -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758          127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT  192 (354)
Q Consensus       127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  192 (354)
                           +....++..+...|...|++++|...+++..+     ++    ..++..+...+...|++++|...+++......
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  258 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  258 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence                 12244678888999999999999999987753     22    23788888999999999999999998752111


Q ss_pred             --CCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758          193 --DMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV  269 (354)
Q Consensus       193 --~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  269 (354)
                        +..+. ..++..+...+...|++++|...+....+.......               ......++..+...|.+.|++
T Consensus       259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~  323 (406)
T 3sf4_A          259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND---------------RIGEGRACWSLGNAYTALGNH  323 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred             hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHcCCH
Confidence              11111 456778888889999999999998877665331000               000145677888899999999


Q ss_pred             HHHHHHHHHHHHc----CcCC-CHhhHHHHHHHhhccCcccC
Q 038758          270 VDALDLLRDVIVA----NVKP-NTVTIVSVLPACLKLAALPQ  306 (354)
Q Consensus       270 ~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~  306 (354)
                      ++|.+.+++..+.    +-.+ ...++..+...+...|+...
T Consensus       324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            9999999987653    2112 12344455555555555433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.24  E-value=7.2e-11  Score=105.99  Aligned_cols=211  Identities=9%  Similarity=-0.110  Sum_probs=164.0

Q ss_pred             hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh-hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758           81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM-EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSK  155 (354)
Q Consensus        81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (354)
                      ++.+.+.++...+.. +.+...+..+..++...|++ ++|.+.|++.    +.+...|..+...|.+.|++++|.+.|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455566666544432 44677888999999999999 9999999987    44577899999999999999999999988


Q ss_pred             CCC--CChhhhHHHHHHHHhC---------CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhh--------cCcc
Q 038758          156 IKQ--KDLVSWNAMLAGYALG---------GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQV--------KGVK  215 (354)
Q Consensus       156 ~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~--------~~~~  215 (354)
                      ..+  |+...+..+...+...         |++++|.+.|++..  ..  .| +...+..+..++...        |+++
T Consensus       163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV--QM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--Hh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            764  7777888888999999         99999999999987  32  34 466788888888887        8888


Q ss_pred             ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758          216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL  295 (354)
Q Consensus       216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  295 (354)
                      +|...++...+.....                  ..+...|..+...|...|++++|.+.|++..+.  .|+..      
T Consensus       239 ~A~~~~~~al~~~p~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~------  292 (474)
T 4abn_A          239 QALSAYAQAEKVDRKA------------------SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWP------  292 (474)
T ss_dssp             HHHHHHHHHHHHCGGG------------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------
T ss_pred             HHHHHHHHHHHhCCCc------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------
Confidence            8888888777654200                  146788999999999999999999999999865  35432      


Q ss_pred             HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                                       ..+..+...+...|++++|.+.++++.
T Consensus       293 -----------------~a~~~l~~~~~~lg~~~eAi~~~~~~~  319 (474)
T 4abn_A          293 -----------------EPQQREQQLLEFLSRLTSLLESKGKTK  319 (474)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                             235566667777777777777666554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.22  E-value=1.4e-10  Score=90.06  Aligned_cols=172  Identities=6%  Similarity=-0.000  Sum_probs=113.9

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~  143 (354)
                      +...|..+...+...|++++|.+.|+...+.. +-+...+..+..+|.+.|++++|...+....                
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~----------------   66 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFV----------------   66 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence            44557777777777777777777777777654 4455666777777777777777776665530                


Q ss_pred             CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758          144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY  223 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  223 (354)
                                 .....+...+..+...+...++++.+.+.+++..  .. .+-+...+..+..++.+.|++++|...++.
T Consensus        67 -----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~--~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (184)
T 3vtx_A           67 -----------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAI--AL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEK  132 (184)
T ss_dssp             -----------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence                       0011234455556666677777777777777664  21 122345566666667777777777777766


Q ss_pred             hhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      ..+..                     +.+..+|..+...|.+.|++++|++.|++..+.  .|+..
T Consensus       133 ~l~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~a  175 (184)
T 3vtx_A          133 TISIK---------------------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKKA  175 (184)
T ss_dssp             HHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHHH
T ss_pred             HHHhc---------------------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccCH
Confidence            66654                     345677888889999999999999999988764  45543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.20  E-value=1.9e-10  Score=88.86  Aligned_cols=155  Identities=14%  Similarity=0.061  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            46677778889999999999999887653 3456678888888899999999999999988764 556777888888899


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      ..|++++|.+.+++.    +.+...+..+...+...|++++|...+++..+   .+...+..+...+.+.|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999888876    33444555556666666666666666655432   23445555666666666666666666


Q ss_pred             HHHH
Q 038758          185 DEME  188 (354)
Q Consensus       185 ~~m~  188 (354)
                      +...
T Consensus       168 ~~~~  171 (186)
T 3as5_A          168 KKAN  171 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=6e-10  Score=99.87  Aligned_cols=252  Identities=9%  Similarity=-0.018  Sum_probs=164.2

Q ss_pred             cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-----c--cCC-CceehhhHHHHHHhcCChhHHHHHHHhhc------
Q 038758           62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-----K--FEG-NACVKRPLLDLFIKCGRMEITSGLFEEMD------  127 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~------  127 (354)
                      ......|+.|...+...|++++|.+.|+...+.     +  ..| ...+|+.+..+|...|++++|...+++..      
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            445567899999999999999999999887653     1  122 34578899999999999999999998760      


Q ss_pred             ------cccchhhHHHHHHHhc--CchhHHHHHhccCCC--CC-hhhhHHHHHH---HHhCCChhHHHHHHHHHHhhhcC
Q 038758          128 ------QDFLVNNSLIDFYAKC--RYLKVSHCKFSKIKQ--KD-LVSWNAMLAG---YALGGFREEVTNLLDEMEMIQTD  193 (354)
Q Consensus       128 ------~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~--~~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~  193 (354)
                            ....++..+..++.+.  +++++|...|++..+  |+ ...+..+...   +...++.++|++.+++..  .  
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~--  203 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--R--  203 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--H--
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--h--
Confidence                  1223444454455443  578899999987753  43 3344444333   445677888888888776  2  


Q ss_pred             CCCC-cchHHHHHHHhhh----hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758          194 MQPN-TISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ  268 (354)
Q Consensus       194 ~~p~-~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~  268 (354)
                      +.|+ ...+..+...+..    .++.++|...++...+..                     +.+...+..+...|.+.|+
T Consensus       204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------------------~~~~~~~~~lg~~~~~~~~  262 (472)
T 4g1t_A          204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------------------PGVTDVLRSAAKFYRRKDE  262 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTC
T ss_pred             cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------------------ccHHHHHHHHHHHHHHcCc
Confidence            2343 3344444433333    355666777776665543                     3456778888899999999


Q ss_pred             HHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCc-------------------ccCc---------c-ccchhHHHHH
Q 038758          269 VVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAA-------------------LPQG---------L-GTGSFVWNAL  318 (354)
Q Consensus       269 ~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~-------------------~~~~---------~-~~~~~~~~~l  318 (354)
                      +++|...+++..+.  .|+. ..+..+-..|...+.                   .+.+         . +.+..++..+
T Consensus       263 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  340 (472)
T 4g1t_A          263 PDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL  340 (472)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH
Confidence            99999999998765  4543 344444333322111                   0111         2 2345667788


Q ss_pred             HHHHHhcCChhHHHHHhhcCCC
Q 038758          319 IDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ...|.+.|++++|.+.|++..+
T Consensus       341 g~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          341 ASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHh
Confidence            8889999999999999887654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.18  E-value=3.8e-09  Score=96.28  Aligned_cols=268  Identities=8%  Similarity=0.010  Sum_probs=167.8

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCc---ccHHHHHHHH-------------hccCChhhHHHHHHHHHHh--c-------cC
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDH---FVCPKVYKAC-------------SELKDYRVGKDVYDYMISI--K-------FE   97 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~~~--~-------~~   97 (354)
                      .|+++.|..+|++..+.   |+.   ..|.......             .+.+++..|..++..+.+.  +       ++
T Consensus       143 ~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  219 (530)
T 2ooe_A          143 NQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP  219 (530)
T ss_dssp             HHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred             HhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence            78999999999999873   332   2333222210             1345677777777764321  1       23


Q ss_pred             CCc--------eehhhHHHHHHhc----CCh----hHHHHHHHhh----ccccchhhHHHHHHHh-------cCchh---
Q 038758           98 GNA--------CVKRPLLDLFIKC----GRM----EITSGLFEEM----DQDFLVNNSLIDFYAK-------CRYLK---  147 (354)
Q Consensus        98 ~~~--------~~~~~li~~~~~~----g~~----~~a~~~~~~~----~~~~~~~~~li~~~~~-------~~~~~---  147 (354)
                      |+.        ..|...+......    ++.    +.+..+|++.    +.+...|..+...+.+       .|+++   
T Consensus       220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~  299 (530)
T 2ooe_A          220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK  299 (530)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence            331        2344443322221    222    3666677776    5567788888888775       69987   


Q ss_pred             ----HHHHHhccCCC---C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc--chHHHHHHHhhhhcCcccc
Q 038758          148 ----VSHCKFSKIKQ---K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT--ISLSGVLAACAQVKGVKLG  217 (354)
Q Consensus       148 ----~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a  217 (354)
                          +|..+|++..+   | +...|..+...+.+.|++++|.++|+...  .  +.|+.  ..|......+.+.|+.+.|
T Consensus       300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--A--IEDIDPTLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--SSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh--C--ccccCchHHHHHHHHHHHHhcCHHHH
Confidence                89999987763   4 46678889999999999999999999997  4  45553  3678888888888999999


Q ss_pred             chhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHHcCcCC-CHhhHHHHH
Q 038758          218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS-AFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVL  295 (354)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li  295 (354)
                      ..+|+...+....                     +...|..... .+...|+.++|..+|++..+.  .| +...+..++
T Consensus       376 ~~~~~~Al~~~~~---------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~  432 (530)
T 2ooe_A          376 RMIFKKAREDART---------------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYI  432 (530)
T ss_dssp             HHHHHHHHTCTTC---------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCC---------------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence            9999887765321                     1111111111 122355555555555555433  23 234444555


Q ss_pred             HHhhccCcccCc---------c---cc--chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          296 PACLKLAALPQG---------L---GT--GSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       296 ~~~~~~~~~~~~---------~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      ..+.+.|+.+.+         .   .|  ...+|...+....+.|+.+.+.++++++.+
T Consensus       433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555554443         1   11  133688888888889999999999888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.18  E-value=5.9e-10  Score=86.07  Aligned_cols=160  Identities=16%  Similarity=0.051  Sum_probs=119.7

Q ss_pred             hhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758          132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~  208 (354)
                      .+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|.+.+++..  .. .+.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--AD-APDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc-CCCCHHHHHHHHHHH
Confidence            445566677777888888888877764   355667778888888899999998888886  32 223456677777788


Q ss_pred             hhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758          209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT  288 (354)
Q Consensus       209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  288 (354)
                      ...|++++|...++...+..                     +.+...+..+...+.+.|++++|...+++..+..  |+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~  143 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN---------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNE  143 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHhcCHHHHHHHHHHHHhcC---------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccc
Confidence            88888888888888777664                     3456677888888888999999999998887653  322


Q ss_pred             hhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       289 ~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                             ..++..+...+.+.|++++|.+.+++..+
T Consensus       144 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          144 -----------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                   22377788888888999999988887765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.15  E-value=5.7e-09  Score=90.53  Aligned_cols=225  Identities=8%  Similarity=-0.043  Sum_probs=155.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhH
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPL  106 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l  106 (354)
                      .-..+...|++++|...+++........+..    .+..+...+...|+++.|.+.+++..+..-. ++    ..++..+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3445667899999999999988764222221    3555667778899999999999998765311 12    2235677


Q ss_pred             HHHHHhcCChhHHHHHHHhh----c-------c-ccchhhHHHHHHHhcCchhHHHHHhccCCC--C------ChhhhHH
Q 038758          107 LDLFIKCGRMEITSGLFEEM----D-------Q-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K------DLVSWNA  166 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~----~-------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~  166 (354)
                      ...+...|++++|.+.+++.    +       + ....+..+...+...|++++|...+++...  +      ...++..
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  179 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  179 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence            88899999999999999987    1       1 123456677889999999999999876542  1      1245777


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHH-----HHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLS-----GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                      +...+...|++++|...+++..  ...-.++. ..+.     .....+...|+.++|...+........           
T Consensus       180 la~~~~~~g~~~~A~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-----------  246 (373)
T 1hz4_A          180 LIQCSLARGDLDNARSQLNRLE--NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF-----------  246 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH--HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-----------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH--HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC-----------
Confidence            7888899999999999999886  32111211 1121     122336677888888887776654321           


Q ss_pred             HHHHhcccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          241 SCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       241 a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                               .++   ...+..+...+...|++++|...+++..+.
T Consensus       247 ---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          247 ---------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             ---------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                     111   124567778899999999999999988653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.13  E-value=5.1e-10  Score=92.70  Aligned_cols=224  Identities=12%  Similarity=0.012  Sum_probs=144.9

Q ss_pred             HhcCChhHHHHHHHHHHhC-------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc------c-CCCceehhhH
Q 038758           41 NVLGYYEEIVNLFYLMIDK-------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK------F-EGNACVKRPL  106 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~-~~~~~~~~~l  106 (354)
                      ...|++++|...+++..+.       +.+.....+..+...+...|++++|.+.++...+..      - +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3457777777777776552       222345567788888889999999999998887652      1 2235578888


Q ss_pred             HHHHHhcCChhHHHHHHHhh------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------C----Chhh
Q 038758          107 LDLFIKCGRMEITSGLFEEM------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------K----DLVS  163 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~  163 (354)
                      ..+|...|++++|.+.|++.            +....++..+...|...|++++|...|++..+       +    ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999998887            12245667788888888888888888876642       1    2356


Q ss_pred             hHHHHHHHHhCCChhHHHHHHHHHHhhh-----cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758          164 WNAMLAGYALGGFREEVTNLLDEMEMIQ-----TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV  238 (354)
Q Consensus       164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  238 (354)
                      +..+...+.+.|++++|.+.+++.....     ....+....+...+..+...+........+                 
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  234 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-----------------  234 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-----------------
Confidence            7788888999999999999998886210     022344333333333333222222211111                 


Q ss_pred             HHHHHHhcccCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          239 ICSCSVFNQLST---RDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       239 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ..+...++....   ....++..+...|.+.|++++|...|++..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            122222222221   1245688889999999999999999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.12  E-value=1.6e-09  Score=94.50  Aligned_cols=228  Identities=7%  Similarity=-0.178  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCC----CcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-----Cce
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG----VRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-----NAC  101 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~  101 (354)
                      |...-..+...|++++|...+++..+.-    -.+ ....+..+...+...|+++.|.+.++...+.--. +     ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            3345556788999999999999987641    111 3356888888999999999999999998865211 1     235


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh----c------cccchhhHHHHHHHhcCchhHHHHHhccCCC--------C-Chh
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM----D------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K-DLV  162 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~----~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~  162 (354)
                      +++.+..+|...|++++|.+.|++.    +      ....++..+...|...|++++|...|++..+        | ...
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            7888899999999999999999987    1      1124788899999999999999999877653        2 234


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhhc--CCCCCcchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccch
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQT--DMQPNTISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGF  237 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~  237 (354)
                      ++..+...+.+.|++++|.+.+++......  +-+.....+..+-..+...|+   .++|..+++.....          
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~----------  335 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY----------  335 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH----------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH----------
Confidence            688888999999999999999998762111  111112234555555666666   33333333332110          


Q ss_pred             hHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       238 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                                  ......+..+...|.+.|++++|...|++..+.
T Consensus       336 ------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          336 ------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                        112346777889999999999999999998753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.10  E-value=8.3e-10  Score=91.41  Aligned_cols=228  Identities=12%  Similarity=0.060  Sum_probs=147.0

Q ss_pred             hccCChhhHHHHHHHHHHh-------ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhH
Q 038758           76 SELKDYRVGKDVYDYMISI-------KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV  148 (354)
Q Consensus        76 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~  148 (354)
                      ...|+++.|...+++..+.       ..+....++..+...|...|++++|...+++.                      
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------   69 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA----------------------   69 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH----------------------
Confidence            4667888888888877753       11223557788888899999999999887764                      


Q ss_pred             HHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc----C-CCCCcchHHHHHHHhhhhcCccccch
Q 038758          149 SHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT----D-MQPNTISLSGVLAACAQVKGVKLGKA  219 (354)
Q Consensus       149 a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~-~~p~~~t~~~ll~~~~~~~~~~~a~~  219 (354)
                       .++.++..    .....++..+...+...|++++|.+.|++......    . .+....++..+...+...|++++|..
T Consensus        70 -l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  148 (283)
T 3edt_B           70 -LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY  148 (283)
T ss_dssp             -HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             -HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             23332221    12345677778888888888888888887752100    1 12235567777777888888888888


Q ss_pred             hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CcCCCHhhHH
Q 038758          220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-------NVKPNTVTIV  292 (354)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~  292 (354)
                      .++...+....             ....-......++..+...|.+.|++++|...+++..+.       ...|....+.
T Consensus       149 ~~~~al~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~  215 (283)
T 3edt_B          149 YYRRALEIYAT-------------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW  215 (283)
T ss_dssp             HHHHHHHHHHH-------------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred             HHHHHHHHHHH-------------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence            87776654110             000000123467888899999999999999999998753       2233333333


Q ss_pred             HHHHHhhccCcc-cCc---------------c-ccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          293 SVLPACLKLAAL-PQG---------------L-GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       293 ~li~~~~~~~~~-~~~---------------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                      ..+..+...+.. ..+               . .....++..+...|.+.|++++|.+.+++..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             HHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333333222221 111               1 2245678889999999999999999998653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.09  E-value=1.1e-09  Score=102.61  Aligned_cols=155  Identities=6%  Similarity=-0.027  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +|+.|-..+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|.
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            78899999999999999999999998863 2345678899999999999999999999999875 556788999999999


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      +.|++++|.+.|++.    +.+...|+.+...|.+.|++++|++.|++..+  | +...|..+...+...|++++|.+.+
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence            999999999999987    45677899999999999999999999998764  4 4678889999999999999999988


Q ss_pred             HHHH
Q 038758          185 DEME  188 (354)
Q Consensus       185 ~~m~  188 (354)
                      ++..
T Consensus       169 ~kal  172 (723)
T 4gyw_A          169 KKLV  172 (723)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=5.3e-09  Score=91.01  Aligned_cols=225  Identities=7%  Similarity=0.003  Sum_probs=145.9

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhcc-CC----CceehhhHHHHHHhcCChhHHHHHHHhh----c-------cccchhhH
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKF-EG----NACVKRPLLDLFIKCGRMEITSGLFEEM----D-------QDFLVNNS  135 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~----~-------~~~~~~~~  135 (354)
                      ...+...|++++|...|+...+.-- .+    ...++..+..+|...|+++.|...+++.    +       ....+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3445688999999999999886521 12    2456788888999999999999888876    1       12345566


Q ss_pred             HHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhh--cCCCCCcchHHHH
Q 038758          136 LIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ--TDMQPNTISLSGV  204 (354)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~p~~~t~~~l  204 (354)
                      +...|...|++++|...|++..+     ++    ..+++.+...|...|++++|.+.|++.....  .+.+....++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            77778888888888877765542     11    2356677777888888888888887775100  0222235566667


Q ss_pred             HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC-cchHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 038758          205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD-VVVWNSIISAFVRSGQ---VVDALDLLRDVI  280 (354)
Q Consensus       205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~a~~~~~~m~  280 (354)
                      ...+.+.|+.++|...++...+....                 ...+. ...++.+-..+...++   ..+|+..+++. 
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-  329 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITA-----------------RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-  329 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCT-----------------TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-
Confidence            77777778888777777666554321                 11111 2234444445555666   55666655542 


Q ss_pred             HcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758          281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       281 ~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  339 (354)
                        +..|+.                       ...+..+...|.+.|++++|.+.|++..
T Consensus       330 --~~~~~~-----------------------~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          330 --NLHAYI-----------------------EACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             --TCHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --CChhHH-----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              222221                       2246678889999999999999988754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=9.9e-09  Score=85.92  Aligned_cols=196  Identities=9%  Similarity=-0.079  Sum_probs=121.4

Q ss_pred             HHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------CC--hhhhHHHHH
Q 038758          109 LFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------KD--LVSWNAMLA  169 (354)
Q Consensus       109 ~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~li~  169 (354)
                      .|...|++++|...|++.          .....+|+.+...|.+.|++++|...|++..+       +.  ..+++.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555555555555544          00133455555566666666666555554432       11  346788888


Q ss_pred             HHHhC-CChhHHHHHHHHHHhhhcCC--CCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHh
Q 038758          170 GYALG-GFREEVTNLLDEMEMIQTDM--QPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVF  245 (354)
Q Consensus       170 ~~~~~-~~~~~a~~~~~~m~~~~~~~--~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  245 (354)
                      .|... |++++|...|++..+...+.  .+. ..++..+...+.+.|++++|...++...+....               
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------  190 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG---------------  190 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---------------
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---------------
Confidence            89886 99999999999876211111  111 345777888889999999999998888776541               


Q ss_pred             cccCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHH
Q 038758          246 NQLSTRDV-----VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID  320 (354)
Q Consensus       246 ~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~  320 (354)
                          .+..     ..|..+...+...|++++|...|++..+  +.|+....                  .....+..++.
T Consensus       191 ----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~------------------~~~~~l~~l~~  246 (292)
T 1qqe_A          191 ----NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS------------------RESNFLKSLID  246 (292)
T ss_dssp             ----CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------------------------HHHHHHHHH
T ss_pred             ----CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc------------------HHHHHHHHHHH
Confidence                1111     1467778889999999999999999874  34543210                  01112444555


Q ss_pred             HHH--hcCChhHHHHHhhcCCCCCc
Q 038758          321 MYG--RCGAIQKSRKIFVLMPHKNL  343 (354)
Q Consensus       321 ~~~--~~g~~~~A~~~~~~m~~~~~  343 (354)
                      ++.  ..+++++|.+.|+.+...|+
T Consensus       247 ~~~~~~~~~~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          247 AVNEGDSEQLSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             HHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHcCCHHHHHHHHHHhccCCccHH
Confidence            554  46778899999988877544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.02  E-value=5.5e-09  Score=83.96  Aligned_cols=145  Identities=7%  Similarity=-0.030  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|...-..+...|++++|...|++..+...+++...+..+...+...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence            4566777888999999999999999987644777777778889999999999999999998764 446778899999999


Q ss_pred             hcCChhHHHHHHHhh----cccc-------chhhHHHHHHHhcCchhHHHHHhccCCC--CC---hhhhHHHHHHHHhCC
Q 038758          112 KCGRMEITSGLFEEM----DQDF-------LVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---LVSWNAMLAGYALGG  175 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~  175 (354)
                      ..|++++|...|++.    +.+.       ..|..+...+...|++++|...|++..+  |+   ...|..+...|...|
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            999999999999987    2233       4577788888999999999999998876  33   345666666666554


Q ss_pred             Ch
Q 038758          176 FR  177 (354)
Q Consensus       176 ~~  177 (354)
                      +.
T Consensus       168 ~~  169 (228)
T 4i17_A          168 AD  169 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=5e-09  Score=76.08  Aligned_cols=128  Identities=13%  Similarity=0.215  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|.++++.+.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            46677778888899999999998887754 3355667777788888888888888888887764 445566777777777


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ..|++++|.+.++++..                           ....+...+..+...+.+.|++++|.+.++++.
T Consensus        81 ~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALE---------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH---------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            77887777777665410                           011245566677777788888888888887775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.98  E-value=8.4e-09  Score=86.35  Aligned_cols=188  Identities=10%  Similarity=-0.014  Sum_probs=104.9

Q ss_pred             HhccCChhhHHHHHHHHHHh----ccCCC-ceehhhHHHHHHhcCChhHHHHHHHhh---cc-------ccchhhHHHHH
Q 038758           75 CSELKDYRVGKDVYDYMISI----KFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEM---DQ-------DFLVNNSLIDF  139 (354)
Q Consensus        75 ~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~---~~-------~~~~~~~li~~  139 (354)
                      +...|++++|.+.|+...+.    |-++. ..+|+.+..+|.+.|++++|...|++.   .+       ...+++.+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44455555555555554433    11111 334555555555556665555555554   00       12345556666


Q ss_pred             HHhc-CchhHHHHHhccCCC--C---C----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc------hHHH
Q 038758          140 YAKC-RYLKVSHCKFSKIKQ--K---D----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI------SLSG  203 (354)
Q Consensus       140 ~~~~-~~~~~a~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~------t~~~  203 (354)
                      |... |++++|...|++..+  |   +    ..+++.+...+.+.|++++|...|++..  .........      .|..
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI--KSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTSSCTTTGGGHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHhcCCcccHHHHHHHHH
Confidence            6664 666666666665542  1   1    3457778888888999999999998886  332222111      4556


Q ss_pred             HHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038758          204 VLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV--RSGQVVDALDLLRDVI  280 (354)
Q Consensus       204 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~  280 (354)
                      +..++...|+++.|...++...+.......                ......+..++.++.  ..+++++|+..|+++.
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSEDPNFAD----------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            666777788888888887776654321000                001112334455554  3466888888887665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.98  E-value=3e-09  Score=99.64  Aligned_cols=160  Identities=7%  Similarity=-0.045  Sum_probs=139.3

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF  139 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~  139 (354)
                      +...|+.|...+.+.|++++|.+.|++..+.. +-+...+..|..+|.+.|++++|.+.|++.    +.+...|..+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35568899999999999999999999999874 556788999999999999999999999987    4457789999999


Q ss_pred             HHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCcc
Q 038758          140 YAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVK  215 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~  215 (354)
                      |.+.|++++|++.|++..+  | +...|+.+...|.+.|++++|++.|++..  +  +.|+ ...+..+..++...|+++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al--~--l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL--K--LKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--hCCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999998764  3 56789999999999999999999999987  2  3454 567889999999999999


Q ss_pred             ccchhhhHhhhhc
Q 038758          216 LGKAIHGYVLRHH  228 (354)
Q Consensus       216 ~a~~~~~~~~~~~  228 (354)
                      +|.+.+++..+..
T Consensus       163 ~A~~~~~kal~l~  175 (723)
T 4gyw_A          163 DYDERMKKLVSIV  175 (723)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999988877643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.94  E-value=1.4e-08  Score=90.50  Aligned_cols=101  Identities=9%  Similarity=-0.027  Sum_probs=39.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh---hhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY---RVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      -..+.+.|++++|.++|++..+.|   +...+..|-..+...|+.   ++|.+.|+...+.    ++..+..|...+...
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            344556677777777777766654   222333333344445555   6666666665533    444455555544444


Q ss_pred             C-----ChhHHHHHHHhh--ccccchhhHHHHHHHhcC
Q 038758          114 G-----RMEITSGLFEEM--DQDFLVNNSLIDFYAKCR  144 (354)
Q Consensus       114 g-----~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~  144 (354)
                      |     ++++|.+.|++.  ..+...+..|...|...+
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~  120 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYP  120 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCG
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            3     556666666655  222334444444444433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.92  E-value=4.6e-08  Score=85.02  Aligned_cols=223  Identities=10%  Similarity=-0.065  Sum_probs=156.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCc-C----CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-----Cceehh
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVR-P----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-----NACVKR  104 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~~~~  104 (354)
                      .-..+...|++++|...|++..+.... +    ....+..+...+...|+++.|...++...+..-. +     ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            344567889999999999998765211 2    2346778888899999999999999988765211 1     245678


Q ss_pred             hHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------C-ChhhhHH
Q 038758          105 PLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------K-DLVSWNA  166 (354)
Q Consensus       105 ~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~  166 (354)
                      .+..+|...|++++|.+.|++.          .....++..+...|...|++++|...|++..+       | ...++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            8999999999999999999887          11234677889999999999999999987653       2 2456778


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCC-C---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQP-N---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC  242 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~  242 (354)
                      +...+.+.|++++|...+++..  ...-.. +   ...+..+-..+...++.+                     ...+|+
T Consensus       267 la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~ly~~~~~~~---------------------~~~~al  323 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGL--DHITARSHKFYKELFLFLQAVYKETVDER---------------------KIHDLL  323 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--HHCCTTCCSCHHHHHHHHHHHHSSSCCHH---------------------HHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhCCCcHH---------------------HHHHHH
Confidence            8889999999999999999987  322111 1   122333333334444411                     122233


Q ss_pred             HHhcccCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          243 SVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       243 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ..+++...  .....+..+...|.+.|++++|...|++..+
T Consensus       324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33333211  1224566788899999999999999998864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.90  E-value=8.8e-08  Score=82.95  Aligned_cols=233  Identities=9%  Similarity=0.060  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC-C----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC--C-C
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-D----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE--G-N   99 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~--~-~   99 (354)
                      +++.+-..+...|++++|...+++........ +    ..++..+...+...|++++|.+.++...+..    ..  | .
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            45667778889999999999999987642111 1    1224566777889999999999999987653    11  2 2


Q ss_pred             ceehhhHHHHHHhcCChhHHHHHHHhh---cc------ccchhhHHHHHHHhcCchhHHHHHhccCC----CCCh-hhhH
Q 038758          100 ACVKRPLLDLFIKCGRMEITSGLFEEM---DQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QKDL-VSWN  165 (354)
Q Consensus       100 ~~~~~~li~~~~~~g~~~~a~~~~~~~---~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~  165 (354)
                      ...+..+...+...|++++|...+++.   .+      ...++..+...+...|++++|...+++..    .++. ..+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~  214 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  214 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence            345667888899999999999999986   11      12356678888999999999999987654    2221 1222


Q ss_pred             -----HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758          166 -----AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF  237 (354)
Q Consensus       166 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (354)
                           .....+...|++++|...+++..  .....+.   ...+..+...+...|++++|...++..........    .
T Consensus       215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----~  288 (373)
T 1hz4_A          215 SNANKVRVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR----L  288 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSC--CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhCC--CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc----c
Confidence                 22344779999999999999886  4332111   12355666778888999999988877765432100    0


Q ss_pred             hHHHHHHhcccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          238 VICSCSVFNQLSTRDV-VVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       238 ~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                                  .++. ..+..+-..+...|+.++|...+++..+.
T Consensus       289 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          289 ------------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                        0111 24556677888999999999999987653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.90  E-value=7.4e-08  Score=77.25  Aligned_cols=193  Identities=9%  Similarity=-0.009  Sum_probs=142.1

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF  139 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~  139 (354)
                      |...+......+...|++++|.+.|+...+...+++...+..+..++...|++++|.+.|++.    +.+...|..+...
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            456777888889999999999999999998863378888888999999999999999999988    4456788889999


Q ss_pred             HHhcCchhHHHHHhccCCC--CC-h-------hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHH
Q 038758          140 YAKCRYLKVSHCKFSKIKQ--KD-L-------VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLA  206 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~  206 (354)
                      |...|++++|...|++..+  |+ .       ..|..+-..+.+.|++++|.+.|++..  .  ..|+   ...+..+..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~--~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT--D--VTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--T--SSCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--h--cCCCcccHHHHHHHHH
Confidence            9999999999999988764  33 3       347777888899999999999999987  3  3554   345666666


Q ss_pred             HhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758          207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  286 (354)
                      ++...|..     +++.+...+                     ..+...|....  ....+.+++|+..|++..+.  .|
T Consensus       162 ~~~~~~~~-----~~~~a~~~~---------------------~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p  211 (228)
T 4i17_A          162 LFYNNGAD-----VLRKATPLA---------------------SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SP  211 (228)
T ss_dssp             HHHHHHHH-----HHHHHGGGT---------------------TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHHH-----HHHHHHhcc---------------------cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CC
Confidence            66555432     222222221                     22233333332  23456689999999998865  46


Q ss_pred             CHhh
Q 038758          287 NTVT  290 (354)
Q Consensus       287 ~~~t  290 (354)
                      +...
T Consensus       212 ~~~~  215 (228)
T 4i17_A          212 NRTE  215 (228)
T ss_dssp             TCHH
T ss_pred             CCHH
Confidence            5543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=1.6e-08  Score=73.34  Aligned_cols=131  Identities=11%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~  146 (354)
                      .|..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|++..                   
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------------   62 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-------------------   62 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------
Confidence            35566667777788888888888777654 3455566666677777777777776666531                   


Q ss_pred             hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                          +    ....+...+..+...+.+.|++++|.+.++++.  ... +.+...+..+...+.+.|+.++|...+..+.+
T Consensus        63 ----~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           63 ----E----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             ----H----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ----H----HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence                0    012345678888899999999999999999987  332 33466788889999999999999999998876


Q ss_pred             hc
Q 038758          227 HH  228 (354)
Q Consensus       227 ~~  228 (354)
                      ..
T Consensus       132 ~~  133 (136)
T 2fo7_A          132 LD  133 (136)
T ss_dssp             HS
T ss_pred             cC
Confidence            54

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.88  E-value=1.1e-07  Score=84.82  Aligned_cols=167  Identities=8%  Similarity=-0.036  Sum_probs=68.7

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---EEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL   78 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~   78 (354)
                      ++|...+....+.|- |+..            ..|-..|...|+.   ++|...|++..+.    +...+..|...+...
T Consensus        20 ~~A~~~~~~aa~~g~-~~A~------------~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A           20 VTAQQNYQQLAELGY-SEAQ------------VGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHTC-CTGG------------GTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCC-HHHH------------HHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            467777777777662 2211            1122223334555   6777777776643    344445554433333


Q ss_pred             C-----ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhhHHHHHHHhcCc---
Q 038758           79 K-----DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLIDFYAKCRY---  145 (354)
Q Consensus        79 ~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~~~---  145 (354)
                      +     ++++|.+.|+...+.| .  ...+..|...|...+..+.+.+.++.+     ..+...+..|...|...+.   
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence            3     6667777777776654 2  225555666666555433333333222     1233444445555554442   


Q ss_pred             -hhHHHHHhccCCCCChhhhHHHHHHHHhCC---ChhHHHHHHHHHH
Q 038758          146 -LKVSHCKFSKIKQKDLVSWNAMLAGYALGG---FREEVTNLLDEME  188 (354)
Q Consensus       146 -~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~  188 (354)
                       .+++..+++.....++..+..+...|.+.|   +.++|++.|+...
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence             233333344433334445555555555555   5555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.80  E-value=9.3e-08  Score=75.64  Aligned_cols=160  Identities=13%  Similarity=0.068  Sum_probs=122.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHH----------------HHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK----------------VYKACSELKDYRVGKDVYDYMISIKFEGNA  100 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  100 (354)
                      ...+...|++++|...|++..+... -+...|..                +...+.+.|++++|...|+...+.. +-+.
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~   88 (208)
T 3urz_A           11 VSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV   88 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence            3456788999999999999987642 23344556                7888999999999999999999875 5678


Q ss_pred             eehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcC--chhHHHHHhccCCCCChhh--hHHHHHHHH
Q 038758          101 CVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCR--YLKVSHCKFSKIKQKDLVS--WNAMLAGYA  172 (354)
Q Consensus       101 ~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~--~~~li~~~~  172 (354)
                      ..+..+..++...|++++|...|++.    +.+..+|..+...|...|  ..+.+...++....|+...  +.....++.
T Consensus        89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~  168 (208)
T 3urz_A           89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL  168 (208)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            88999999999999999999999998    456678888888887665  4566778888887766543  333455667


Q ss_pred             hCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758          173 LGGFREEVTNLLDEMEMIQTDMQPNTISLS  202 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~  202 (354)
                      ..|++++|...|++..    .+.|+.....
T Consensus       169 ~~~~~~~A~~~~~~al----~l~P~~~~~~  194 (208)
T 3urz_A          169 FTTRYEKARNSLQKVI----LRFPSTEAQK  194 (208)
T ss_dssp             HHHTHHHHHHHHHHHT----TTSCCHHHHH
T ss_pred             HccCHHHHHHHHHHHH----HhCCCHHHHH
Confidence            7899999999999987    4567654433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.78  E-value=4.9e-08  Score=80.13  Aligned_cols=181  Identities=12%  Similarity=0.088  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CC-CceehhhH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EG-NACVKRPL  106 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~l  106 (354)
                      +-.+-..+.+.|++++|...|++..+..  |+    ...+..+...+...|++++|...|+...+... .| ....+..+
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            4455667888999999999999998864  33    45677788889999999999999999998631 11 23456777


Q ss_pred             HHHHHh--------cCChhHHHHHHHhh---cc-ccchh-----------------hHHHHHHHhcCchhHHHHHhccCC
Q 038758          107 LDLFIK--------CGRMEITSGLFEEM---DQ-DFLVN-----------------NSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       107 i~~~~~--------~g~~~~a~~~~~~~---~~-~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      ..++..        .|++++|...|++.   .| +....                 ..+...|.+.|++++|...|++..
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            888888        99999999999988   23 33344                 345677888888888888888775


Q ss_pred             C--CC----hhhhHHHHHHHHhC----------CChhHHHHHHHHHHhhhcCCCCCcc----hHHHHHHHhhhhcCcccc
Q 038758          158 Q--KD----LVSWNAMLAGYALG----------GFREEVTNLLDEMEMIQTDMQPNTI----SLSGVLAACAQVKGVKLG  217 (354)
Q Consensus       158 ~--~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a  217 (354)
                      +  |+    ...+..+..+|.+.          |++++|...|+...  .  ..|+..    ....+-....+.++.+.+
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~--~--~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL--Q--IFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH--H--HCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH--H--HCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            3  43    23466666777655          77888888888886  2  234432    333333344444544444


Q ss_pred             ch
Q 038758          218 KA  219 (354)
Q Consensus       218 ~~  219 (354)
                      ..
T Consensus       252 ~~  253 (261)
T 3qky_A          252 AS  253 (261)
T ss_dssp             TT
T ss_pred             hH
Confidence            33

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.78  E-value=5.3e-08  Score=80.69  Aligned_cols=178  Identities=8%  Similarity=-0.004  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHHHhcCChhHHHHHHHhh-
Q 038758           49 IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLFIKCGRMEITSGLFEEM-  126 (354)
Q Consensus        49 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-  126 (354)
                      +...|++..+.+ .++..++..+..++...|++++|.+++......+- .-+...+..++..+.+.|+.+.|.+.+++| 
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            667777776655 45566666788888899999999999988765542 135567778889999999999999999887 


Q ss_pred             --cc-----ccchhhHHHHHH--HhcC--chhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758          127 --DQ-----DFLVNNSLIDFY--AKCR--YLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD  193 (354)
Q Consensus       127 --~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  193 (354)
                        .|     +..+...|..++  ...|  +..+|..+|+++.+  |+..+-..++.++.+.|++++|.+.++.+.+....
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence              44     245556666663  3334  89999999999875  43234455666889999999999999977520111


Q ss_pred             C------CC-CcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          194 M------QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       194 ~------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      +      .| |..++..++......|+  .+.+++.++.+...
T Consensus       244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            1      24 45566455555555665  78888888887754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.76  E-value=8e-08  Score=79.63  Aligned_cols=186  Identities=12%  Similarity=0.064  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-c-----cccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758           84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-D-----QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus        84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      +...|++..+.+ .++..++..+..++...|++++|++.+.+. .     .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677787777655 556666678889999999999999999987 2     456677788999999999999999999887


Q ss_pred             C--C-----ChhhhHHHHHHHH--h--CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          158 Q--K-----DLVSWNAMLAGYA--L--GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       158 ~--~-----~~~~~~~li~~~~--~--~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      +  |     +..+...+..+++  .  .+++.+|..+|+++.  ..  .|+..+-..++.++.+.|++++|+..++.+.+
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~--~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS--QT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH--TT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--Hh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5  4     2345555665532  2  348999999999996  33  34433445555588899999999999987665


Q ss_pred             hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      .......    .       +.+.+.|..+.-.+|......|+  +|.++++++.+.  .|+..
T Consensus       240 ~~p~~~~----k-------~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQ----K-------ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA  287 (310)
T ss_dssp             HHHHTTT----C-------HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred             hcccccc----c-------ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence            4210000    0       00002355666455555555677  899999999865  56654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.76  E-value=4.9e-07  Score=76.09  Aligned_cols=197  Identities=7%  Similarity=-0.091  Sum_probs=120.4

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      ..|++++|.+++++..+..  +..  +      +...++++.|...|+..               ...|...|++++|..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            3578888888888776542  110  0      11134555555555443               234555566666665


Q ss_pred             HHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCC-------CCC--hhhhHHHHHHHHhCCChhHHHH
Q 038758          122 LFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-------QKD--LVSWNAMLAGYALGGFREEVTN  182 (354)
Q Consensus       122 ~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~~~~~~a~~  182 (354)
                      .|.+.          ......|+.+...|.+.|++++|...|++..       .+.  ..+++.+...|.. |++++|++
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            55554          0112345555666666666666666554432       222  3467777888877 99999999


Q ss_pred             HHHHHHhhhc--CCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC-cchHHH
Q 038758          183 LLDEMEMIQT--DMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD-VVVWNS  258 (354)
Q Consensus       183 ~~~~m~~~~~--~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~  258 (354)
                      .|++......  +-.+ ...++..+...+.+.|++++|...++...+.......                .+. ...+..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~~~~  200 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN----------------YPTCYKKCIA  200 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------------hhHHHHHHHH
Confidence            9988752111  1111 1356777788888999999999988877765331000                001 225666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 038758          259 IISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       259 li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      +...+...|++++|...|++..
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Confidence            6777888899999999999987

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.69  E-value=5.2e-07  Score=72.23  Aligned_cols=178  Identities=10%  Similarity=-0.019  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehhhHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLL  107 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li  107 (354)
                      +..+...+.+.|++++|...|+++.+......  ...+..+..++.+.|++++|...|+.+.+.. +-+..   .+..+.
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHH
Confidence            34455678889999999999999987532211  2457778888999999999999999998763 22222   344444


Q ss_pred             HHHHh------------------cCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhH
Q 038758          108 DLFIK------------------CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN  165 (354)
Q Consensus       108 ~~~~~------------------~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  165 (354)
                      .++..                  .|+.++|...|+++    +.+...+.+....-.-.+...              ...-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~--------------~~~~  151 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA--------------KYEY  151 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH--------------HHHH
Confidence            44443                  35566666666655    112222211100000000000              0001


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      .+...|.+.|++++|...|+.+.  ..  .|+    ...+..+..++.+.|+.++|...++.+...+.
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l--~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGML--RD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH--HH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHH--HH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence            23344556666666666666654  21  122    13455556666666666666666665555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=4.6e-07  Score=75.68  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=68.9

Q ss_pred             cccchhhhhhHhhhhh-------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-cCCcc----cHHHH
Q 038758           16 VELCAFLGSQLLEVFC-------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHF----VCPKV   71 (354)
Q Consensus        16 ~~~~~~~~~~li~~~~-------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l   71 (354)
                      ..|+..+...+...+.                   .+...+..+...|++++|..++++..+... .|+..    .+..+
T Consensus        42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l  121 (293)
T 3u3w_A           42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV  121 (293)
T ss_dssp             CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence            4566666555555554                   233346667778888888888888776421 12211    22235


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ...+...+++++|.+.++...+.... ++    ..+++.+..+|...|++++|...|++.
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55556667888888888887764322 22    125777777788888888888777664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.68  E-value=9.7e-08  Score=89.54  Aligned_cols=166  Identities=10%  Similarity=-0.046  Sum_probs=135.0

Q ss_pred             HhcCChhHHHHHHHHHH--------hCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           41 NVLGYYEEIVNLFYLMI--------DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|.+.|+...+.+ +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67899999999999998        332 3455678888889999999999999999999875 6677889999999999


Q ss_pred             cCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758          113 CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLD  185 (354)
Q Consensus       113 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~  185 (354)
                      .|++++|.+.|++.    +.+...|..+..+|.+.|++++ ++.|++..+  | +...|..+..++.+.|++++|.+.|+
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999997    4567788999999999999999 999988753  3 56778899999999999999999999


Q ss_pred             HHHhhhcCCCCC-cchHHHHHHHhhhhcC
Q 038758          186 EMEMIQTDMQPN-TISLSGVLAACAQVKG  213 (354)
Q Consensus       186 ~m~~~~~~~~p~-~~t~~~ll~~~~~~~~  213 (354)
                      +..    .+.|+ ...+..+..++...++
T Consensus       559 ~al----~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          559 EVP----PTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TSC----TTSTTHHHHHHHHHHHTC----
T ss_pred             hhc----ccCcccHHHHHHHHHHHHccCC
Confidence            875    34555 4456666666655444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.66  E-value=2e-07  Score=76.45  Aligned_cols=161  Identities=9%  Similarity=-0.029  Sum_probs=117.6

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHHHHHHHhh---ccc----cchh
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEITSGLFEEM---DQD----FLVN  133 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~----~~~~  133 (354)
                      +...+..+...+.+.|++++|.+.|+.+.+.. +.+   ...+..+..+|.+.|++++|...|++.   .|+    ...+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44556667778889999999999999998764 323   567888899999999999999999998   232    3456


Q ss_pred             hHHHHHHHh--------cCchhHHHHHhccCCC--CCh-hhh-----------------HHHHHHHHhCCChhHHHHHHH
Q 038758          134 NSLIDFYAK--------CRYLKVSHCKFSKIKQ--KDL-VSW-----------------NAMLAGYALGGFREEVTNLLD  185 (354)
Q Consensus       134 ~~li~~~~~--------~~~~~~a~~~~~~~~~--~~~-~~~-----------------~~li~~~~~~~~~~~a~~~~~  185 (354)
                      ..+..++..        .|++++|...|++...  |+. ...                 ..+...|.+.|++++|...|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            677788888        9999999999998764  432 333                 445778899999999999999


Q ss_pred             HHHhhhcCC--CCCcchHHHHHHHhhhh----------cCccccchhhhHhhhh
Q 038758          186 EMEMIQTDM--QPNTISLSGVLAACAQV----------KGVKLGKAIHGYVLRH  227 (354)
Q Consensus       186 ~m~~~~~~~--~p~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~  227 (354)
                      ...  ....  ......+..+..++...          |++++|...++.+.+.
T Consensus       173 ~~l--~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          173 AVF--DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHH--HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            987  3221  11234566677777766          4445555555554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.63  E-value=8.7e-07  Score=67.90  Aligned_cols=154  Identities=10%  Similarity=-0.007  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH--hh
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA--CA  209 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~--~~  209 (354)
                      .+...+.+.|++++|...|++..+  | +...+..+...+.+.|++++|...|+...  .  ..|+.. +..+...  +.
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~--~~p~~~-~~~~~~~~~~~   85 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--L--EYQDNS-YKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--G--GGCCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--h--ccCChH-HHHHHHHHHHH
Confidence            344556666666666666666653  2 44556667777777777777777777664  2  122222 2222111  11


Q ss_pred             hhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      ..++...+...++...+..                     +.+...+..+...+...|++++|...|+++.+.  .|+..
T Consensus        86 ~~~~~~~a~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~  142 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN---------------------PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQ  142 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTT
T ss_pred             hhcccchHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccC
Confidence            2222223444454444432                     235677778888888888888888888888755  34321


Q ss_pred             hHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758          290 TIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       290 t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                                           +...+..+...+...|+.++|...|++
T Consensus       143 ---------------------~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          143 ---------------------DGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             ---------------------TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             ---------------------hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence                                 112366677777778888877777664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.62  E-value=1.4e-06  Score=68.80  Aligned_cols=157  Identities=11%  Similarity=-0.049  Sum_probs=101.4

Q ss_pred             hhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758          133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK  212 (354)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~  212 (354)
                      +..+...+...|++++|...|++...|+...|..+...+.+.|++++|.+.|++..  ... +.+...+..+..++...|
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI--NRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC-ccchHHHHHHHHHHHHcc
Confidence            33455667777788888888877777777778888888888888888888888776  322 234556777777788888


Q ss_pred             CccccchhhhHhhhhccccccccchhHHHHHHhc-ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN-QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                      ++++|...++...+........    .  ..... .........|..+...|.+.|++++|...|++..+..-......+
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  159 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLI----D--YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI  159 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEE----E--CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred             cHHHHHHHHHHHHHhCCCccHH----H--HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence            8888888887776653210000    0  00000 000012367788889999999999999999999865422233333


Q ss_pred             HHHHHHh
Q 038758          292 VSVLPAC  298 (354)
Q Consensus       292 ~~li~~~  298 (354)
                      ...+..+
T Consensus       160 ~~a~~~~  166 (213)
T 1hh8_A          160 DKAMECV  166 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.62  E-value=3.5e-07  Score=76.25  Aligned_cols=162  Identities=8%  Similarity=-0.051  Sum_probs=120.5

Q ss_pred             CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHH-HHH
Q 038758           97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNA-MLA  169 (354)
Q Consensus        97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~  169 (354)
                      +.+...+..+...+...|++++|.+.|++.    +.+...+..+...+.+.|++++|...+++...  |+...... ...
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            445566777888888999999999999987    44566788888899999999999999998875  54332222 223


Q ss_pred             HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      .+.+.++.++|.+.|++..  .. -+.+...+..+...+...|+.++|...+..+.+....                   
T Consensus       194 ~l~~~~~~~~a~~~l~~al--~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-------------------  251 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQV--AE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-------------------  251 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred             HHHhhcccCccHHHHHHHH--hc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-------------------
Confidence            3567778888888888775  22 2234566777788888899999999988888877531                   


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      ..+...+..+...+...|+.++|...|++-.
T Consensus       252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          252 AADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            1135678888899999999999888887754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.61  E-value=1.1e-07  Score=89.25  Aligned_cols=166  Identities=8%  Similarity=-0.059  Sum_probs=128.6

Q ss_pred             hccCChhhHHHHHHHHH--------HhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758           76 SELKDYRVGKDVYDYMI--------SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        76 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~  143 (354)
                      ...|++++|.+.++...        +.. +.+...+..+..++...|++++|.+.|++.    +.+...|..+..+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            78899999999999988        332 456678888999999999999999999988    44667888899999999


Q ss_pred             CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccch
Q 038758          144 RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKA  219 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~  219 (354)
                      |++++|...|++..+  | +...|..+..++.+.|++++ .+.|++..  .  +.| +...+..+-.++.+.|+.++|..
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al--~--~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVW--S--TNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH--H--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999988764  3 56778888899999999999 99999886  2  233 35677788888888888888888


Q ss_pred             hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758          220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ  268 (354)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~  268 (354)
                      .++...+...                     .+...|..+..++...++
T Consensus       556 ~~~~al~l~P---------------------~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSR---------------------HFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTST---------------------THHHHHHHHHHHTC----
T ss_pred             HHHhhcccCc---------------------ccHHHHHHHHHHHHccCC
Confidence            8877766542                     234566666666655444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.61  E-value=5.3e-07  Score=69.14  Aligned_cols=153  Identities=10%  Similarity=0.037  Sum_probs=74.6

Q ss_pred             hHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHH-HHhCCCh
Q 038758          105 PLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAG-YALGGFR  177 (354)
Q Consensus       105 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~~~  177 (354)
                      .+...+...|++++|...|++.    +.+...+..+...+.+.|++++|...|++...  |+...+...... +.+.++.
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence            3344455555555555555554    23344455555555555555555555555543  222111111101 1122222


Q ss_pred             hHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchH
Q 038758          178 EEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW  256 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  256 (354)
                      .+|...++...  .  ..|+ ...+..+..++...|++++|...+..+.+....                   ..+...+
T Consensus        91 ~~a~~~~~~al--~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~a~  147 (176)
T 2r5s_A           91 SPELKRLEQEL--A--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG-------------------AQDGEVK  147 (176)
T ss_dssp             CHHHHHHHHHH--H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-------------------TTTTHHH
T ss_pred             chHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------------cChHHHH
Confidence            33455555554  1  2232 444555555566666666666666655554320                   1123456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          257 NSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       257 ~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                      ..+...+...|+.++|...|++..
T Consensus       148 ~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          148 KTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHHH
Confidence            666666666677766766666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.60  E-value=1.7e-07  Score=86.07  Aligned_cols=144  Identities=8%  Similarity=-0.048  Sum_probs=100.9

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL  122 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  122 (354)
                      .|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            477888888888887653 2345667788888888899999999998888764 45577788888889999999999988


Q ss_pred             HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhC---CChhHHHHHHHHHH
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG---GFREEVTNLLDEME  188 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~  188 (354)
                      |++.    +.+...+..+...|.+.|++++|.+.|++..+   .+...+..+...+...   |++++|.+.+++..
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            8887    44566788888888999999999988887653   3456777888888888   88889999888886

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.59  E-value=5.7e-08  Score=72.52  Aligned_cols=85  Identities=14%  Similarity=0.025  Sum_probs=56.0

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  119 (354)
                      +...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|+...+.. +-+..+|..+..+|.+.|++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            445567777777777665432 1223345566667777777777777777777664 44566777777777777777777


Q ss_pred             HHHHHhh
Q 038758          120 SGLFEEM  126 (354)
Q Consensus       120 ~~~~~~~  126 (354)
                      ...|++.
T Consensus        85 ~~~~~~a   91 (150)
T 4ga2_A           85 VECYRRS   91 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.59  E-value=4.4e-07  Score=75.60  Aligned_cols=162  Identities=11%  Similarity=-0.030  Sum_probs=125.4

Q ss_pred             cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhh-HHH
Q 038758           62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNN-SLI  137 (354)
Q Consensus        62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~li  137 (354)
                      +.+...+..+...+...|++++|...|+...+.. +-+...+..+..++.+.|++++|...+++.   .|+..... ...
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            3344556777778889999999999999998875 556778999999999999999999999998   33332222 222


Q ss_pred             HHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcC
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKG  213 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~  213 (354)
                      ..+.+.++.++|...+++...  | +...+..+...+...|++++|.+.|++..  ..... .+...+..+...+...|+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l--~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL--RXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcccccccchHHHHHHHHHHHcCC
Confidence            346677888888888877653  4 56778889999999999999999999997  33221 235678889999999999


Q ss_pred             ccccchhhhHhhh
Q 038758          214 VKLGKAIHGYVLR  226 (354)
Q Consensus       214 ~~~a~~~~~~~~~  226 (354)
                      .+.+...+++...
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9988887766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.59  E-value=9.3e-07  Score=73.83  Aligned_cols=65  Identities=6%  Similarity=-0.189  Sum_probs=39.8

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhh--cCCCCC-cchHHHHHHHhhhhcCcccc-chhhhHhhh
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQ--TDMQPN-TISLSGVLAACAQVKGVKLG-KAIHGYVLR  226 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~p~-~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~  226 (354)
                      .+|+.+...|.+.|++++|.+.+++.....  .+..+. ..+|..+..++.+.|+.++| ...++....
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            466667777777777777777777664111  111111 45566777777777777777 665665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.58  E-value=3.7e-07  Score=72.16  Aligned_cols=156  Identities=9%  Similarity=-0.025  Sum_probs=106.5

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHH----------------HHHHhhhhcCccccchhhhHhhhhcc
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSG----------------VLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      ....+.+.|++++|...|+...  .  ..|+ ...+..                +..++.+.|++++|...++...+.. 
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-   84 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTI--A--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-   84 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--H--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH--H--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence            3345566777777777777765  2  2232 223333                6667778888888888887777764 


Q ss_pred             ccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcc----
Q 038758          230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAAL----  304 (354)
Q Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~----  304 (354)
                                          +.+...|..+...+...|++++|+..|++..+.  .|+ ...+..+-..+...|+.    
T Consensus        85 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~  142 (208)
T 3urz_A           85 --------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKK  142 (208)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHH
Confidence                                346788999999999999999999999999875  454 45666666666554432    


Q ss_pred             -----cCccccch--hHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHh
Q 038758          305 -----PQGLGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVM  349 (354)
Q Consensus       305 -----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l  349 (354)
                           .....|+.  ..+.....++...|++++|...|++..+  |+......+
T Consensus       143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l  196 (208)
T 3urz_A          143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL  196 (208)
T ss_dssp             HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence                 22244443  3344556677789999999999999887  776555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.52  E-value=1.6e-06  Score=68.63  Aligned_cols=171  Identities=9%  Similarity=-0.082  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC----ChhHHHHHH
Q 038758           48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG----RMEITSGLF  123 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~  123 (354)
                      +|++.|++..+.|   +...+..+-..+...+++++|.+.|+...+.|   ++..+..|-..|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4666777777654   55667777777777888888888888887765   45566667777776 6    788888888


Q ss_pred             Hhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCCCC-----hhhhHHHHHHHHh----CCChhHHHHHHHHHH
Q 038758          124 EEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQKD-----LVSWNAMLAGYAL----GGFREEVTNLLDEME  188 (354)
Q Consensus       124 ~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~  188 (354)
                      ++.  ..+...+..|...|..    .+++++|...|++..+.+     ...+..|-..|..    .+++++|...|+...
T Consensus        77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            877  3455566777777776    788888988888777533     5778888888888    788999999999886


Q ss_pred             hhhcCCCCCcchHHHHHHHhhhh-c-----CccccchhhhHhhhhcc
Q 038758          189 MIQTDMQPNTISLSGVLAACAQV-K-----GVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       189 ~~~~~~~p~~~t~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~  229 (354)
                        ..  ..+...+..+-..|... |     +.++|...++...+.|.
T Consensus       157 --~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          157 --SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             --HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             --Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence              44  22334555555555432 2     67888888877777664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.52  E-value=8.7e-07  Score=70.91  Aligned_cols=167  Identities=7%  Similarity=-0.114  Sum_probs=100.9

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-CceehhhHHHHHHhcCChhHHHHHHHhh---ccccc----hhhHH
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-NACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFL----VNNSL  136 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~----~~~~l  136 (354)
                      ..+..+...+...|++++|...|+.+.+.... | ....+..+..+|.+.|++++|...|+++   .|+..    .+..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            34555666788899999999999999876311 1 1246777888999999999999999987   33322    33334


Q ss_pred             HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc-h---------------
Q 038758          137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI-S---------------  200 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-t---------------  200 (354)
                      ..++.+.+..     .+        ..|..+-..+...|++++|...|++..  .  ..|+.. .               
T Consensus        85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l--~--~~P~~~~a~~a~~~l~~~~~~~~  147 (225)
T 2yhc_A           85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLV--R--GYPNSQYTTDATKRLVFLKDRLA  147 (225)
T ss_dssp             HHHHHHHHC---------------------------CCHHHHHHHHHHHHHH--T--TCTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHH--H--HCcCChhHHHHHHHHHHHHHHHH
Confidence            4444432100     00        001111122223344445555554443  1  112211 1               


Q ss_pred             --HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccC
Q 038758          201 --LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLS  249 (354)
Q Consensus       201 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~  249 (354)
                        ...+...+.+.|+++.|...++.+.+.....+.             +.|+.++|...++.+.
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence              124566788999999999999999887654331             8899999999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.48  E-value=1.3e-06  Score=68.89  Aligned_cols=137  Identities=10%  Similarity=0.010  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK  112 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  112 (354)
                      +..+-..+...|++++|...|++.    +.|+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            455666788899999999999877    35677888889999999999999999999988775 5567788888899999


Q ss_pred             cCChhHHHHHHHhhc---cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          113 CGRMEITSGLFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       113 ~g~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .|++++|.+.|++..   |+.....     +...|.         .........+..+...+.+.|++++|.+.|+...
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLID-----YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEE-----CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHH-----HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999998887751   1100000     000000         0000123567778888888888989988888886

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.48  E-value=2.5e-06  Score=71.74  Aligned_cols=156  Identities=6%  Similarity=-0.031  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC-----CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC---C--Cce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE---G--NAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~  101 (354)
                      .|+.....|...|++++|.+.|.+..+.....     -..+|+.+...|...|++++|...|+...+.-..   +  ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            67888888999999999999999876542111     1346788888899999999999999988765211   1  135


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hh
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LV  162 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~  162 (354)
                      ++..+..+|.. |++++|...|++.    +.      ...++..+...|.+.|++++|...|++...     ++    ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            67788888988 9999999999887    11      145677888999999999999999987753     11    22


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .+..+...+...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56666677788899999999999873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.48  E-value=2e-06  Score=61.11  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+..++.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            46667778888899999999998887754 3355667778888888888999988888888764 456667778888888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|...|++.
T Consensus        89 ~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           89 KQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH
Confidence            888888888887775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.47  E-value=4e-06  Score=77.84  Aligned_cols=222  Identities=7%  Similarity=-0.033  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHH-HHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758           83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS-GLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus        83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      .+..+|++.+... +-+...|-..+..+...|+.++|. ++|++.    +.+...|-..+...-+.|++++|.++|+++.
T Consensus       327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456677777652 556677777777788888888886 888876    3344556667777778888888888887765


Q ss_pred             C-------------CC------------hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc--CCCCCcchHHHHHHHhhh
Q 038758          158 Q-------------KD------------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT--DMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       158 ~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~p~~~t~~~ll~~~~~  210 (354)
                      .             |+            ...|-..+....+.|..+.|..+|....  +.  ...+......+.+.-. .
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~--~~~~~~~~~lyi~~A~lE~~-~  482 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR--RLKKLVTPDIYLENAYIEYH-I  482 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH--HTGGGSCTHHHHHHHHHHHT-T
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHH-h
Confidence            3             21            2246666666677788888888888886  43  1222222222222211 1


Q ss_pred             hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                      .++.+.|..+|+..++.-                     +.+...|...+......|+.+.|..+|++.......+..  
T Consensus       483 ~~d~e~Ar~ife~~Lk~~---------------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~--  539 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKYF---------------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL--  539 (679)
T ss_dssp             TSCCHHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH--
T ss_pred             CCCHHHHHHHHHHHHHHC---------------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH--
Confidence            244778888887777653                     345566778888888889999999999998765321111  


Q ss_pred             HHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhhh
Q 038758          291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMIS  351 (354)
Q Consensus       291 ~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~  351 (354)
                                          ...+|...++.-.+.|+.+.+.++.+++.+  |+......+++
T Consensus       540 --------------------~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~  582 (679)
T 4e6h_A          540 --------------------LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN  582 (679)
T ss_dssp             --------------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence                                223588888888889999999999998886  66555444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.46  E-value=1.8e-06  Score=64.97  Aligned_cols=93  Identities=10%  Similarity=0.024  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            56777778888899999999888887753 3356667777778888888888888888888764 445667777777788


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|.+.|++.
T Consensus        93 ~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           93 ALGKFRAALRDYETV  107 (166)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHH
Confidence            888888887777664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.46  E-value=1.7e-07  Score=69.88  Aligned_cols=136  Identities=4%  Similarity=-0.102  Sum_probs=98.9

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~  147 (354)
                      -..+...|++++|...++...... +.+...+..+...|.+.|++++|.+.|++.    +.+..+|..+..+|.+.|+++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            344566788888888888766542 334556778889999999999999999987    556778889999999999999


Q ss_pred             HHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH-HHHHHhhhcCCCCC-cchHHHHHHHhhhhc
Q 038758          148 VSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL-LDEMEMIQTDMQPN-TISLSGVLAACAQVK  212 (354)
Q Consensus       148 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~  212 (354)
                      +|...|++..+  | +...|..+...|.+.|++++|.+. ++...    .+.|+ ...|...-..+.+.|
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al----~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA----KLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH----HHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----HhCcCCHHHHHHHHHHHHHhC
Confidence            99999987764  4 466788888889999998776665 46665    23454 344554444444444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.45  E-value=7.8e-07  Score=81.70  Aligned_cols=147  Identities=7%  Similarity=-0.136  Sum_probs=100.9

Q ss_pred             cCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHh
Q 038758           78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus        78 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.|++.    +.+...+..+...|...|++++|.+.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478899999999887764 445778889999999999999999999987    445667788888899999999999988


Q ss_pred             ccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh---cCccccchhhhHhhhh
Q 038758          154 SKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLRH  227 (354)
Q Consensus       154 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~  227 (354)
                      ++..+   .+...+..+...+.+.|++++|.+.|++..  ... +.+...+..+..++...   |+.++|...++...+.
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH--QLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            87653   346678888888899999999999998886  321 22355677777778888   7888888888777766


Q ss_pred             c
Q 038758          228 H  228 (354)
Q Consensus       228 ~  228 (354)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.43  E-value=3.6e-05  Score=64.18  Aligned_cols=222  Identities=9%  Similarity=0.004  Sum_probs=159.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccC--ChhhHHHHHHHHHHhccCCCceehhhHHHHH--
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELK--DYRVGKDVYDYMISIKFEGNACVKRPLLDLF--  110 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--  110 (354)
                      +.....+....++|+++.+.+...  .|+..| |+.--..+...+  +++++.++++.+.+.+ +.+..+|+.--.++  
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence            333334445556899999999875  455544 777666777777  9999999999999875 55666776655555  


Q ss_pred             --Hhc---CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh--HHHHHhccCCC---CChhhhHHHHHHHHhCCC
Q 038758          111 --IKC---GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK--VSHCKFSKIKQ---KDLVSWNAMLAGYALGGF  176 (354)
Q Consensus       111 --~~~---g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  176 (354)
                        ...   ++++++.++++++    +.+-.+|+.-...+.+.|.++  ++.+.++++.+   .|...|+.-...+.+.+.
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              555   7899999999998    556778888777888888888  89998888875   355566666666666666


Q ss_pred             ------hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc-cchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          177 ------REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL-GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       177 ------~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                            ++++++.++.+.  .. -+-|...|+..-..+.+.|+... +..+...+.+.+..                  .
T Consensus       196 ~~~~~~~~eEl~~~~~aI--~~-~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~------------------~  254 (306)
T 3dra_A          196 LATDNTIDEELNYVKDKI--VK-CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD------------------Q  254 (306)
T ss_dssp             GCCHHHHHHHHHHHHHHH--HH-CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT------------------E
T ss_pred             cchhhhHHHHHHHHHHHH--Hh-CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC------------------C
Confidence                  788888888886  32 23345667777666777666433 44455544443200                  0


Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      ..+...+..+...|.+.|+.++|.++++.+.+
T Consensus       255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            34677888999999999999999999999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.41  E-value=4.4e-06  Score=60.13  Aligned_cols=110  Identities=5%  Similarity=-0.034  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~   95 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence            67778888899999999999999988764 3356678888888889999999999999988764 456778888888899


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC  143 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~  143 (354)
                      +.|++++|.+.|++.    +.+...+..+...+.+.
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            999999999888876    22334444444444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.40  E-value=1.2e-05  Score=74.75  Aligned_cols=230  Identities=9%  Similarity=-0.036  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHH-HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      +.+..+|++.... ++-+...|......+...|+.+.|. ++|+..... ++.+...|-..+...-+.|+++.|.++|++
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3456778887765 2446666777777778889999996 999998864 355666677888888999999999999998


Q ss_pred             hc--------------c------------ccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHH---HHHHhC-
Q 038758          126 MD--------------Q------------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAML---AGYALG-  174 (354)
Q Consensus       126 ~~--------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li---~~~~~~-  174 (354)
                      +-              |            ...+|...+....+.|+.+.|.++|.+..+. +..++...+   ..-.+. 
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            82              2            1236777888888899999999999887642 222232222   222233 


Q ss_pred             CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758          175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV  254 (354)
Q Consensus       175 ~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  254 (354)
                      ++.+.|.++|+...  +. .+-+...+...+......|+.+.|+.+|+...+...+.                  .....
T Consensus       484 ~d~e~Ar~ife~~L--k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~------------------~~~~~  542 (679)
T 4e6h_A          484 KDTKTACKVLELGL--KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS------------------HLLKM  542 (679)
T ss_dssp             SCCHHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST------------------THHHH
T ss_pred             CCHHHHHHHHHHHH--HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH------------------HHHHH
Confidence            45899999999987  33 33344445667777777888899999888877764310                  11346


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                      .|...+.--.+.|+.+.+..+.+++.+.  .|+......++.-|.-.
T Consensus       543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~~  587 (679)
T 4e6h_A          543 IFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKVL  587 (679)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCBT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcCC
Confidence            7888888888999999999999999876  56666666666666433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.39  E-value=3.1e-06  Score=66.96  Aligned_cols=176  Identities=9%  Similarity=-0.087  Sum_probs=132.5

Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcC----chhHHHHHhcc
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR----YLKVSHCKFSK  155 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~----~~~~a~~~~~~  155 (354)
                      .+|.+.|+...+.|   ++..+..|-..|...+++++|.+.|++.  ..+...+..|...|.. +    +.++|...|++
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            35677888877764   6677888999999999999999999998  4456677788888888 7    89999999988


Q ss_pred             CCC-CChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhh----hcCccccchhhhHhh
Q 038758          156 IKQ-KDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQ----VKGVKLGKAIHGYVL  225 (354)
Q Consensus       156 ~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~  225 (354)
                      ..+ .+...+..|-..|..    .+++++|.++|+...  ..|.. .+...+..+-..|..    .++.++|...++...
T Consensus        79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~--~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA--RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT--SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH--HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            765 356677778888877    889999999999987  55432 114556666666666    567777777777766


Q ss_pred             hhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCcC
Q 038758          226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS-G-----QVVDALDLLRDVIVANVK  285 (354)
Q Consensus       226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~  285 (354)
                      +.+                      .+...+..|-..|.+- |     +.++|...|++..+.|..
T Consensus       157 ~~~----------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          157 SLS----------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HTS----------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HcC----------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            541                      2445666777777653 3     899999999999988743

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.39  E-value=4.1e-06  Score=59.93  Aligned_cols=112  Identities=11%  Similarity=0.005  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            56677778888899999999998887753 3355667777888888889999999888888764 445667777888888


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCc
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRY  145 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~  145 (354)
                      ..|++++|...|++.    +.+...+..+..++.+.|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            888888888887775    2233344444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.37  E-value=1.5e-06  Score=72.19  Aligned_cols=187  Identities=7%  Similarity=-0.087  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+-..+.+.|++++|...|++..+.. +-+...|..+...+...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45667778889999999999999998863 2356678888889999999999999999988764 556778889999999


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      ..|++++|...|++.    +.+...+...+....+..........-......+......+ ..+ ..|++++|.+.++..
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~a  161 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRN  161 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGG
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhh
Confidence            999999999999886    22333344344333333322222222222222333333322 322 257888888887766


Q ss_pred             HhhhcCCCCCcchHHHHHHH-hhhh-cCccccchhhhHhhh
Q 038758          188 EMIQTDMQPNTISLSGVLAA-CAQV-KGVKLGKAIHGYVLR  226 (354)
Q Consensus       188 ~~~~~~~~p~~~t~~~ll~~-~~~~-~~~~~a~~~~~~~~~  226 (354)
                      .    ...|+......-+.. +.+. +..+++..+|....+
T Consensus       162 l----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          162 H----EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             G----TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             h----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4    235554333333322 2222 445666766665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.36  E-value=4.2e-06  Score=60.17  Aligned_cols=93  Identities=9%  Similarity=0.060  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|...-..|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|.+.++...+.+ +.+...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            56667777888888888888888887754 3355667777778888888888888888887765 556667788888888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|.+.|++.
T Consensus        93 ~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           93 AMREWSKAQRAYEDA  107 (126)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            888888888887765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.36  E-value=1.2e-06  Score=68.52  Aligned_cols=163  Identities=7%  Similarity=-0.025  Sum_probs=103.8

Q ss_pred             HhcCchhHHHH---HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCCCC-CcchHHHHHHHhhhhcCc
Q 038758          141 AKCRYLKVSHC---KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDMQP-NTISLSGVLAACAQVKGV  214 (354)
Q Consensus       141 ~~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~t~~~ll~~~~~~~~~  214 (354)
                      ...|++++|.+   .+..-+......+..+...+...|++++|.+.+++....  ..+..| ....+..+-..+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34566777777   554433334567778888888889999998888877521  112222 245566777778888888


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccC-CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-CCCHhh
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVT  290 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t  290 (354)
                      ++|...+....+...                 ... .+  ....+..+...+...|++++|...+++..+..- .++...
T Consensus        83 ~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           83 DAARRCFLEERELLA-----------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHHH-----------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHH-----------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            888888766555421                 111 11  134577788889999999999999998865311 112111


Q ss_pred             HHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       291 ~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                          -..++..+...+.+.|++++|.+.+++..+
T Consensus       146 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          146 --------------------IACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                                122356777888888888888888776553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.35  E-value=1.5e-06  Score=67.97  Aligned_cols=147  Identities=6%  Similarity=-0.117  Sum_probs=86.9

Q ss_pred             HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc----c-CCCceehhhHHHHHHhcCC
Q 038758           41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK----F-EGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~  115 (354)
                      ...|++++|.++++.... ........+..+...+...|++++|...++...+.-    . +....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            457899999996555543 222345567788888889999999999998887631    1 2234567778888888999


Q ss_pred             hhHHHHHHHhh------cc-c----cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCC
Q 038758          116 MEITSGLFEEM------DQ-D----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGG  175 (354)
Q Consensus       116 ~~~a~~~~~~~------~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~  175 (354)
                      +++|.+.+++.      .+ +    ...+..+...+...|++++|...+++...     .+    ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99998887764      01 1    12234445555555555555555544321     11    112344445555555


Q ss_pred             ChhHHHHHHHHHH
Q 038758          176 FREEVTNLLDEME  188 (354)
Q Consensus       176 ~~~~a~~~~~~m~  188 (354)
                      ++++|.+.+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.34  E-value=1.7e-06  Score=66.12  Aligned_cols=111  Identities=6%  Similarity=0.021  Sum_probs=60.0

Q ss_pred             ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH-HHhcCch--hHH
Q 038758           77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF-YAKCRYL--KVS  149 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~-~~~~~~~--~~a  149 (354)
                      ..|++++|...++...+.. +.+...+..+..+|...|++++|...|++.    +.+...+..+... +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3444555555555444432 333444455555555555555555555544    2233344444444 4455555  555


Q ss_pred             HHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          150 HCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       150 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ...|++...  | +...+..+...+.+.|++++|...|+...
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            555554432  3 45667778888888899999999888876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.33  E-value=6.9e-06  Score=61.02  Aligned_cols=93  Identities=10%  Similarity=-0.029  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|++..... +-+...|..+..++...|++++|.+.|+...+.. +.++..|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            44445555556666666666666665543 2234445555555566666666666666665543 334555555666666


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      +.|++++|...|++.
T Consensus       116 ~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          116 RLKAPLKAKECFELV  130 (151)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            666666666555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.30  E-value=6.3e-06  Score=67.40  Aligned_cols=183  Identities=9%  Similarity=-0.091  Sum_probs=130.0

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHH-------HHHHhccCChhhHHHHHHHHHHhccCCCce-------------
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKV-------YKACSELKDYRVGKDVYDYMISIKFEGNAC-------------  101 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------  101 (354)
                      ..++...|.+.|.+..+.. +-....|..+       ..++.+.++..++...+..-.  ++.|+..             
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccc
Confidence            6899999999999999864 2233446666       455555555555555444433  3344321             


Q ss_pred             ---------ehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-CC----hhhh
Q 038758          102 ---------VKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KD----LVSW  164 (354)
Q Consensus       102 ---------~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~----~~~~  164 (354)
                               ..-.+...+...|++++|.++|+.+   .|+......+...+.+.+++++|+..|+.... ++    ...+
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~  174 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG  174 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence                     1123567889999999999999998   33222556666789999999999999987664 22    2356


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc--chHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  229 (354)
                      ..+-.++.+.|++++|++.|++..  .....|..  ......-.++.+.|+.++|..+|+++.....
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~--~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEAN--DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH--TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh--cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            778889999999999999999985  43332542  2445556678899999999999999988754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.28  E-value=3.5e-06  Score=63.37  Aligned_cols=120  Identities=8%  Similarity=-0.067  Sum_probs=74.0

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK  142 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~  142 (354)
                      .+..+...+...|+++.|...|+...+.. +.+..++..+..++...|++++|...+++.    +.+...+..+...+..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            46666777788889999999998888764 456777888888888888888888887775    2233444555555555


Q ss_pred             cCchhHHHHHhccCCC--C-ChhhhHH--HHHHHHhCCChhHHHHHHHHH
Q 038758          143 CRYLKVSHCKFSKIKQ--K-DLVSWNA--MLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~--~-~~~~~~~--li~~~~~~~~~~~a~~~~~~m  187 (354)
                      .|++++|...|++..+  | +...+..  ....+.+.|++++|.+.+...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555554432  1 2222211  222244445555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.27  E-value=1.1e-06  Score=67.32  Aligned_cols=117  Identities=9%  Similarity=0.018  Sum_probs=93.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH-HHhcCCh--
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL-FIKCGRM--  116 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--  116 (354)
                      +...|++++|...+++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            345789999999999988764 3456778888899999999999999999998875 5567778888888 7789998  


Q ss_pred             hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758          117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus       117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (354)
                      ++|...|++.    +.+...+..+...|...|++++|...|++..+
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            9999999987    44567788888999999999999999987753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.26  E-value=2e-06  Score=71.42  Aligned_cols=93  Identities=9%  Similarity=-0.086  Sum_probs=70.7

Q ss_pred             CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758           64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF  139 (354)
Q Consensus        64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~  139 (354)
                      +...+..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++.    +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34456677778888899999999999888764 446777888888888889999988888876    3345566677777


Q ss_pred             HHhcCchhHHHHHhccCC
Q 038758          140 YAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~  157 (354)
                      |...|++++|...|++..
T Consensus        82 ~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            777777777777776654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.26  E-value=1.9e-05  Score=65.81  Aligned_cols=159  Identities=9%  Similarity=-0.033  Sum_probs=105.5

Q ss_pred             HHHHHhcCChhHHHHHHHhhc------cc----cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHH
Q 038758          107 LDLFIKCGRMEITSGLFEEMD------QD----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAM  167 (354)
Q Consensus       107 i~~~~~~g~~~~a~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l  167 (354)
                      +..+...|++++|..++++..      ++    ...+..+...+...+++++|...|++...     ++    ..+|+.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            455666777777777776651      11    11222355556666777777777765432     23    2258888


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhc---CCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHH
Q 038758          168 LAGYALGGFREEVTNLLDEMEMIQT---DMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS  243 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~~~~~---~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  243 (354)
                      ...|...|++++|...|++..+...   +..+. ..++..+...|.+.|++++|...++...+.......          
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~----------  231 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS----------  231 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----------
Confidence            8999999999999999988862111   22222 246778888899999999999988777654321000          


Q ss_pred             HhcccCCCC-cchHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 038758          244 VFNQLSTRD-VVVWNSIISAFVRSGQ-VVDALDLLRDVIV  281 (354)
Q Consensus       244 ~~~~~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~  281 (354)
                            .+. ..+|..+-..|.+.|+ +++|.+.|++...
T Consensus       232 ------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          232 ------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             ------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence                  111 4578888889999995 6999999988764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.26  E-value=1.2e-05  Score=56.97  Aligned_cols=98  Identities=12%  Similarity=0.167  Sum_probs=76.2

Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                      ...|..+...+.+.|++++|.+.++++.  ... +.+...+..+...+.+.|++++|...++.+.+..            
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------
Confidence            4567777888888888888888888886  322 2345667777778888888888888887777654            


Q ss_pred             HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                               +.+..++..+...+...|++++|...++++.+.
T Consensus        74 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           74 ---------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                     345677888889999999999999999998865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.25  E-value=7.6e-06  Score=60.81  Aligned_cols=94  Identities=4%  Similarity=-0.109  Sum_probs=56.0

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~  146 (354)
                      .+..+...+.+.|++++|.+.|+...+.. +.+...|..+..+|...|++++|...|++.                    
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a--------------------   96 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVA--------------------   96 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHH--------------------
Confidence            34555555666666666666666666554 445556666666666666666666665553                    


Q ss_pred             hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                         .    .+...+...|..+..+|.+.|++++|.+.|+...
T Consensus        97 ---l----~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A           97 ---F----ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             ---H----HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---H----hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               0    0011234556666677777777777777777665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.23  E-value=1.8e-05  Score=65.89  Aligned_cols=162  Identities=9%  Similarity=-0.032  Sum_probs=111.1

Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhh---ccc-------cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hh
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEM---DQD-------FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LV  162 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~---~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~  162 (354)
                      .+...+..+...|++++|.+.+++.   .+.       ...+..+...+...|++++|...+++...     .+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3445566677778888887777654   111       11233455566777888888888765431     12    34


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF  237 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (354)
                      +|+.+...|...|++++|...|++... .....|+     ..++..+...|.+.|++++|...++...+.....      
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~-~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~------  229 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------  229 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc------
Confidence            788899999999999999999998852 1111222     2578888889999999999999998776543210      


Q ss_pred             hHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038758          238 VICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDA-LDLLRDVIV  281 (354)
Q Consensus       238 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~  281 (354)
                                 ..+  -..+|..+...|.+.|+.++| ...+++...
T Consensus       230 -----------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          230 -----------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             -----------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -----------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                       011  145678888999999999999 777777653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.23  E-value=7e-06  Score=69.96  Aligned_cols=92  Identities=8%  Similarity=0.049  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIK   95 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   95 (354)
                      .|..+-..+.+.|++++|...|++..+..  |+.                ..|..+...+.+.|++++|...++...+..
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            77788888889999999999999988764  333                566677777777777777777777777654


Q ss_pred             cCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                       +.+...+..+..+|...|++++|...|++.
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             445566666777777777777777666654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.22  E-value=1.6e-05  Score=65.00  Aligned_cols=185  Identities=8%  Similarity=-0.108  Sum_probs=130.6

Q ss_pred             ccCChhhHHHHHHHHHHhccCCCceehhhH-------HHHHHhcCChhHHHHHHHhh---cc-------c-cc-------
Q 038758           77 ELKDYRVGKDVYDYMISIKFEGNACVKRPL-------LDLFIKCGRMEITSGLFEEM---DQ-------D-FL-------  131 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~---~~-------~-~~-------  131 (354)
                      ..++...|.+.|....+.. +-....|..+       ...+...++..++...+.+-   .|       + .-       
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            5789999999999999875 4455667766       45555555555555444433   11       1 11       


Q ss_pred             -------hhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cch
Q 038758          132 -------VNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TIS  200 (354)
Q Consensus       132 -------~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t  200 (354)
                             .+-.+...+...|++++|.+.|+.+..  |+......+...+.+.++|++|+..|+...  ... .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~--~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAG--KWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG--GCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhh--ccC-CcccHHHH
Confidence                   112366788899999999999999874  543355556667889999999999998554  221 221  235


Q ss_pred             HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758          201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRD  278 (354)
Q Consensus       201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~  278 (354)
                      +..+-.++.+.|++++|...|++......                    .|.  .......-.++.+.|+.++|..+|++
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--------------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~  233 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPA--------------------GEACARAIAWYLAMARRSQGNESAAVALLEW  233 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--------------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--------------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66777789999999999999988764322                    143  23556667788899999999999999


Q ss_pred             HHHcCcCCC
Q 038758          279 VIVANVKPN  287 (354)
Q Consensus       279 m~~~g~~p~  287 (354)
                      +...  .|+
T Consensus       234 a~a~--~P~  240 (282)
T 4f3v_A          234 LQTT--HPE  240 (282)
T ss_dssp             HHHH--SCC
T ss_pred             HHhc--CCc
Confidence            9876  566

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.20  E-value=2e-05  Score=56.23  Aligned_cols=119  Identities=10%  Similarity=-0.016  Sum_probs=84.2

Q ss_pred             ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758          160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI  239 (354)
Q Consensus       160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  239 (354)
                      +...+..+...+...|++++|.+.|++..  .. .+.+...+..+...+...|++++|...+....+..           
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------   76 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAI--EL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----------   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHH--Hc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----------
Confidence            34567777788888888888888888876  32 12345667777777888888888888887777654           


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCc
Q 038758          240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA  303 (354)
Q Consensus       240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~  303 (354)
                                +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|+
T Consensus        77 ----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           77 ----------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             ----------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence                      3356678888889999999999999999988653 2234444444444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.18  E-value=1.9e-06  Score=63.91  Aligned_cols=93  Identities=8%  Similarity=-0.101  Sum_probs=47.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      +..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.                     
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------   81 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG---------------------   81 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------------
Confidence            4444445555555555555555555443 334445555555555555555555554442                     


Q ss_pred             HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                        .+    +...+...+..+..++...|++++|.+.|+...
T Consensus        82 --l~----l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           82 --AV----MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             --HH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --Hh----cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              00    001234445555556666666666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.18  E-value=7.6e-05  Score=62.27  Aligned_cols=215  Identities=11%  Similarity=0.062  Sum_probs=134.7

Q ss_pred             CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC--ChhHHHHHHHhh----ccccchhhHHHHHH----Hhc---Cc
Q 038758           79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG--RMEITSGLFEEM----DQDFLVNNSLIDFY----AKC---RY  145 (354)
Q Consensus        79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~----~~~~~~~~~li~~~----~~~---~~  145 (354)
                      ...++|.++++.+.+.+ +-+..+|+.--.++...|  ++++++++++.+    +.+..+|+.--..+    ...   ++
T Consensus        47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            34468999999998775 555667788778888888  999999999887    44555665544333    444   67


Q ss_pred             hhHHHHHhccCCC---CChhhhHHHHHHHHhCCChh--HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC------c
Q 038758          146 LKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFRE--EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG------V  214 (354)
Q Consensus       146 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~------~  214 (354)
                      ++++..+++++.+   .+-..|+.-.-.+.+.|.++  ++++.++.+.  ... .-|...|+.--..+.+.+.      +
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i--~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI--DTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            7788888877764   34455555555566667777  8888888876  332 2234445544444444333      2


Q ss_pred             cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH-HHHHHHHHHHHcCcCCCHhhHHH
Q 038758          215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV-DALDLLRDVIVANVKPNTVTIVS  293 (354)
Q Consensus       215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~p~~~t~~~  293 (354)
                      +++.+.+....+..                     +.|...|+-+-..+.+.|+.. ++.++..++.+.+ .+       
T Consensus       203 ~eEl~~~~~aI~~~---------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~~-------  253 (306)
T 3dra_A          203 DEELNYVKDKIVKC---------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-KD-------  253 (306)
T ss_dssp             HHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-GT-------
T ss_pred             HHHHHHHHHHHHhC---------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-CC-------
Confidence            23333333333222                     346677777766666666633 3444555544322 00       


Q ss_pred             HHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          294 VLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       294 li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                                    -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus       254 --------------~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          254 --------------QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             --------------EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence                          022455688899999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.15  E-value=2.4e-05  Score=56.07  Aligned_cols=103  Identities=12%  Similarity=0.022  Sum_probs=79.2

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS  241 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a  241 (354)
                      ..+......|.+.|++++|++.|++..  .. -+.+...|..+..++.+.|++++|...++...+..             
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al--~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------   77 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAV--KR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------------   77 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------------
Confidence            456677788888888888888888876  22 12345677777788888888888888888777664             


Q ss_pred             HHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                              +.+...|..+..++...|++++|++.|++..+.  .|+...
T Consensus        78 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~  116 (126)
T 4gco_A           78 --------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEE  116 (126)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             --------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHH
Confidence                    346778888999999999999999999999865  565543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.15  E-value=2.8e-05  Score=55.74  Aligned_cols=99  Identities=8%  Similarity=-0.042  Sum_probs=78.5

Q ss_pred             ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758          160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI  239 (354)
Q Consensus       160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  239 (354)
                      +...|..+...+.+.|++++|.+.|++..  .. .+.+...+..+...+...|++++|...++...+..           
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------   80 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAI--KR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-----------   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHH--TT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------
Confidence            45567788888899999999999999886  32 22345677777778888888888888888877754           


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                                +.+...|..+...+.+.|++++|.+.|++..+.
T Consensus        81 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           81 ----------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence                      345677888889999999999999999998765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.15  E-value=3.3e-05  Score=56.61  Aligned_cols=93  Identities=10%  Similarity=0.032  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+-..+.+.|++++|...|++....+ +.+...|..+...+...|++++|...|+...+.. +.+...+..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            34456667788899999999998888764 3355667777788888899999999998888775 556677888888888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|.+.|++.
T Consensus        98 ~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           98 QLGDLDGAESGFYSA  112 (142)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            889998888888875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.14  E-value=2e-05  Score=58.32  Aligned_cols=93  Identities=11%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .+..+-..+.+.|++++|...|++..... +.+...|..+..++...|++++|.+.|+...+.. +.+...+..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            56677788899999999999999998764 3466678888889999999999999999999875 556788899999999


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|.+.|++.
T Consensus       101 ~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A          101 QXGELAEAESGLFLA  115 (148)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999998875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.11  E-value=3.9e-05  Score=53.53  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            45666777788888888888888887753 2355667777777888888888888888887764 445667777778888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|.+.+++.
T Consensus        84 ~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           84 FLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            888888888777765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.10  E-value=1.7e-05  Score=56.63  Aligned_cols=94  Identities=6%  Similarity=0.014  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCC----ceehhh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGN----ACVKRP  105 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~  105 (354)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+...  .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            46677778888899999999999888764 33556677788888888999999999888887642  122    556777


Q ss_pred             HHHHHHhcCChhHHHHHHHhh
Q 038758          106 LLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~  126 (354)
                      +..++...|++++|.+.|++.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHH
Confidence            777888888888888877765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=2.4e-05  Score=68.86  Aligned_cols=190  Identities=7%  Similarity=-0.109  Sum_probs=133.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CCc
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNA  100 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~  100 (354)
                      +.+.+.|++++|.+.|....+.......                ..+..+...|...|++++|.+.+..+.+.--. ++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            4567889999999999999876422211                12677889999999999999999988764211 111


Q ss_pred             ----eehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--------
Q 038758          101 ----CVKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------  158 (354)
Q Consensus       101 ----~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------  158 (354)
                          .+.+.+-..+...|+.+.+..++++.          .....++..+...|...|++++|..++++...        
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                12333444455678999999998887          11234667889999999999999999876541        


Q ss_pred             C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          159 K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       159 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      + ....|..++..|...|++++|...++........+..+    ...+..+...+...++++.|...+....+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            1 23468888999999999999999998876212222211    234555566677788888888777666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.09  E-value=1.6e-05  Score=59.19  Aligned_cols=134  Identities=10%  Similarity=0.078  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-CC----cccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----AC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~  101 (354)
                      +|..+-..+...|++++|...+++..+.... ++    ...+..+...+...|++++|.+.++...+..-. ++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            5677778888899999999999887664211 11    135677777888888999998888887754211 11    34


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhH
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREE  179 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~  179 (354)
                      .+..+..++...|++++|.+.+++.                       .++......+  ....+..+...+...|++++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a-----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  147 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKH-----------------------LAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  147 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH-----------------------HHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence            5666777777778888887776653                       2222222221  23456677778888888888


Q ss_pred             HHHHHHHHH
Q 038758          180 VTNLLDEME  188 (354)
Q Consensus       180 a~~~~~~m~  188 (354)
                      |.+.+++..
T Consensus       148 A~~~~~~a~  156 (164)
T 3ro3_A          148 AMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=3e-05  Score=68.27  Aligned_cols=193  Identities=8%  Similarity=-0.044  Sum_probs=135.1

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCC-Cc---------------eehhhHHHHHHhcCChhHHHHHHHhhcc-------
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEG-NA---------------CVKRPLLDLFIKCGRMEITSGLFEEMDQ-------  128 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~---------------~~~~~li~~~~~~g~~~~a~~~~~~~~~-------  128 (354)
                      .+.+...|++++|.+.|..+.+..-.. +.               ..+..|...|...|++++|.+.+.+..+       
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            345678899999999999998764221 11               1266789999999999999999998711       


Q ss_pred             ---ccchhhHHHHHHHhcCchhHHHHHhccCCC--------C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-
Q 038758          129 ---DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-  195 (354)
Q Consensus       129 ---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-  195 (354)
                         ...+.+.+-..+...|+.++|..+++....        + -..++..+...+...|++++|..++++......+.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence               112333444555567889999888866542        1 134677888999999999999999998762122222 


Q ss_pred             -CC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC---cchHHHHHHHHHhcCCHH
Q 038758          196 -PN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD---VVVWNSIISAFVRSGQVV  270 (354)
Q Consensus       196 -p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~  270 (354)
                       |. ...+......|...|++++|..+++........                 ...|.   ...+..+...+...|++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~y~  233 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS-----------------IYCPTQTVAELDLMSGILHCEDKDYK  233 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------SCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-----------------CCCchHHHHHHHHHHHHHHHHHHhHH
Confidence             21 346788888899999999999998877654321                 11221   245666667778889999


Q ss_pred             HHHHHHHHHHH
Q 038758          271 DALDLLRDVIV  281 (354)
Q Consensus       271 ~a~~~~~~m~~  281 (354)
                      +|...|.+..+
T Consensus       234 ~A~~~~~~a~~  244 (434)
T 4b4t_Q          234 TAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.3e-05  Score=55.17  Aligned_cols=93  Identities=10%  Similarity=-0.045  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            45566677888899999999998888764 3356677888888888889999999888888765 455677888888888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|...|++.
T Consensus        84 ~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           84 AVKEYASALETLDAA   98 (126)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHH
Confidence            888888888888765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.04  E-value=4.1e-05  Score=59.63  Aligned_cols=118  Identities=12%  Similarity=0.009  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-CC--------------cccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PD--------------HFVCPKVYKACSELKDYRVGKDVYDYMISIKF   96 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~   96 (354)
                      .|..+-..+.+.|++++|...|++..+.... |+              ...|..+...+...|++++|...++...+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            6777778888999999999999998875311 10              1466677777778888888888888877764 


Q ss_pred             CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHH
Q 038758           97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSH  150 (354)
Q Consensus        97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~  150 (354)
                      +.+...+..+..+|...|++++|.+.|++.    +.+...+..+..++...++.+++.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777788888888888777765    223334444444444444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.01  E-value=2.5e-05  Score=54.03  Aligned_cols=92  Identities=21%  Similarity=0.141  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC--CceehhhHHHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG--NACVKRPLLDLF  110 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~  110 (354)
                      |..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.  +...+..+..++
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence            4445556677788888888887777653 2344556667777777777888877777777653 33  456667777777


Q ss_pred             Hhc-CChhHHHHHHHhh
Q 038758          111 IKC-GRMEITSGLFEEM  126 (354)
Q Consensus       111 ~~~-g~~~~a~~~~~~~  126 (354)
                      .+. |++++|.+.+++.
T Consensus        87 ~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             TTCSSCSHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHH
Confidence            777 7777777777665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.00  E-value=7.2e-05  Score=54.06  Aligned_cols=93  Identities=5%  Similarity=-0.091  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+...|++++|...|++..... +.+...|..+...+...|+++.|...++...+.. +.+...+..+..++.
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   88 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence            46667777888899999999988887764 3345667778888888888999988888888765 446677888888888


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|...|++.
T Consensus        89 ~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIANLQRA  103 (137)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            888888888888876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.00  E-value=1.9e-05  Score=67.26  Aligned_cols=145  Identities=8%  Similarity=0.004  Sum_probs=78.8

Q ss_pred             CChhHHHHHHHHHHhCCCcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---------------ceehhhHH
Q 038758           44 GYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---------------ACVKRPLL  107 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li  107 (354)
                      +++++|.+.++...+.  .| +...+..+...+.+.|++++|.+.|+...+.. +.+               ...|..+.
T Consensus       127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence            3444554444433221  22 34457777778888888999988888888764 222               24555555


Q ss_pred             HHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758          108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL  184 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  184 (354)
                      .+|.+.|++++|...|++.                              .+   .+...|..+..+|...|++++|...|
T Consensus       204 ~~~~~~g~~~~A~~~~~~a------------------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  253 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKA------------------------------LELDSNNEKGLSRRGEAHLAVNDFELARADF  253 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH------------------------------HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5555555555555555543                              21   23445555555566666666666666


Q ss_pred             HHHHhhhcCCCC-CcchHHHHHHHhhhhcCcccc-chhhhHhh
Q 038758          185 DEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLG-KAIHGYVL  225 (354)
Q Consensus       185 ~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~  225 (354)
                      ++..  .  +.| +...+..+..++.+.|+.+++ ..++..+.
T Consensus       254 ~~al--~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          254 QKVL--Q--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHH--H--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--H--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554  1  122 233445555555555555555 33444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.99  E-value=5.2e-05  Score=67.82  Aligned_cols=117  Identities=9%  Similarity=-0.006  Sum_probs=93.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR  115 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  115 (354)
                      +-..+.+.|++++|.+.+++..+.. +-+...|..+...+.+.|++++|.+.++...+.. +.+...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            3345667899999999999998863 3356778889999999999999999999999874 5567789999999999999


Q ss_pred             hhHHHHHHHhh----ccccchhhHHHHH--HHhcCchhHHHHHhc
Q 038758          116 MEITSGLFEEM----DQDFLVNNSLIDF--YAKCRYLKVSHCKFS  154 (354)
Q Consensus       116 ~~~a~~~~~~~----~~~~~~~~~li~~--~~~~~~~~~a~~~~~  154 (354)
                      +++|.+.|++.    +.+...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999987    3345566666666  888899999999998

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.98  E-value=0.0011  Score=55.97  Aligned_cols=242  Identities=8%  Similarity=-0.001  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      .++.+-....+.+..++|+++++.+...  .|+.. .|+.--..+...+ +++++.++++.+.+.. +.+..+|+.-..+
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl  132 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            4555555555666778999999999986  44444 4666666666677 5999999999999875 6677788887777


Q ss_pred             HHhc-C-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh--------HHHHHhccCCC---CChhhhHHHHHHHH
Q 038758          110 FIKC-G-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK--------VSHCKFSKIKQ---KDLVSWNAMLAGYA  172 (354)
Q Consensus       110 ~~~~-g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~---~~~~~~~~li~~~~  172 (354)
                      +.+. + +++++.++++++    +.+-.+|+.-...+.+.|.++        ++.+.++++.+   .|...|+.....+.
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7776 7 889999999998    455667776666666666666        88888877764   35667777777777


Q ss_pred             hCCC-------hhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccc-cchhHHHHH
Q 038758          173 LGGF-------REEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-CGFVICSCS  243 (354)
Q Consensus       173 ~~~~-------~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~a~~  243 (354)
                      +.++       ++++++.+++..  .  ..|+ ...|+-+-..+.+.|.... -.+...-...+...+.. ..-.+.+.+
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI--~--~~P~n~SaW~Ylr~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSI--H--LIPHNVSAWNYLRGFLKHFSLPLV-PILPAILPYTASKLNPDIETVEAFGFP  287 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCSG-GGHHHHGGGTC--------------CC
T ss_pred             hccccccchHHHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHhcCCCcc-cccccccccccccccccchhHHHHHHH
Confidence            7765       577888887775  2  3444 4455554444444443200 00000000000000000 000000111


Q ss_pred             Hhcc-----cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          244 VFNQ-----LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       244 ~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      +.+.     ...+.......+...|...|+.++|.++++.+.+
T Consensus       288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            1111     0135667788889999999999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.98  E-value=5.2e-05  Score=57.02  Aligned_cols=93  Identities=8%  Similarity=-0.046  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|.+.|++..+.. +-+...|..+...+...|++++|...++...+.. +.+...|..+..+|.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45556666777777777777777776653 2245556666677777777777777777777654 444566666777777


Q ss_pred             hcCChhHHHHHHHhh
Q 038758          112 KCGRMEITSGLFEEM  126 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~  126 (354)
                      ..|++++|...|++.
T Consensus        91 ~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           91 DMADYKGAKEAYEKG  105 (164)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHH
Confidence            777777777666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.96  E-value=3.1e-05  Score=53.54  Aligned_cols=96  Identities=9%  Similarity=-0.012  Sum_probs=60.3

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcC
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR  144 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~  144 (354)
                      ...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++.                  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------   66 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV------------------   66 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence            3445556666667777777777777666553 334455566666666666666666655543                  


Q ss_pred             chhHHHHHhccCCCC--ChhhhHHHHHHHHhC-CChhHHHHHHHHHH
Q 038758          145 YLKVSHCKFSKIKQK--DLVSWNAMLAGYALG-GFREEVTNLLDEME  188 (354)
Q Consensus       145 ~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~  188 (354)
                           .    +....  +...+..+...+.+. |++++|.+.++...
T Consensus        67 -----~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           67 -----I----NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             -----H----HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             -----H----HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                 0    00112  456677777778888 88888888888775

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.95  E-value=4.2e-05  Score=54.36  Aligned_cols=91  Identities=8%  Similarity=-0.109  Sum_probs=58.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC  113 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  113 (354)
                      ..+-..+.+.|++++|...|++..+.. +-+...|..+...+...|++++|...|+...+.. +.+...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            344455666777777777777776643 2244556666666667777777777777766654 33455666666677777


Q ss_pred             CChhHHHHHHHhh
Q 038758          114 GRMEITSGLFEEM  126 (354)
Q Consensus       114 g~~~~a~~~~~~~  126 (354)
                      |++++|...|++.
T Consensus        99 g~~~~A~~~~~~a  111 (121)
T 1hxi_A           99 HNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            7777777666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.94  E-value=2.4e-05  Score=58.12  Aligned_cols=139  Identities=13%  Similarity=0.047  Sum_probs=94.4

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHH
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA  141 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~  141 (354)
                      ++..+...+...|++++|.+.++...+..-. ++    ..++..+...+...|++++|.+.+++                
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------   74 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK----------------   74 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Confidence            4666667777888888888888887754211 11    13566677777777777777776655                


Q ss_pred             hcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCCCC-CcchHHHHHHHhhhhcCccc
Q 038758          142 KCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDMQP-NTISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~t~~~ll~~~~~~~~~~~  216 (354)
                             |.+++.....+  ....+..+...+...|++++|.+.+++....  ..+..+ ....+..+...+...|+.++
T Consensus        75 -------a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  147 (164)
T 3ro3_A           75 -------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  147 (164)
T ss_dssp             -------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             -------HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence                   23333333221  1345777888889999999999999877521  112222 24678888889999999999


Q ss_pred             cchhhhHhhhhc
Q 038758          217 GKAIHGYVLRHH  228 (354)
Q Consensus       217 a~~~~~~~~~~~  228 (354)
                      |...++...+..
T Consensus       148 A~~~~~~a~~~~  159 (164)
T 3ro3_A          148 AMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.94  E-value=3.1e-05  Score=56.78  Aligned_cols=94  Identities=5%  Similarity=-0.175  Sum_probs=60.7

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~  146 (354)
                      .+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.                    
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------------   78 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYG--------------------   78 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------
Confidence            34455556677777888887777777654 445666777777777777777777766653                    


Q ss_pred             hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                         .+    +...+...+..+..++...|++++|.+.|+...
T Consensus        79 ---l~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           79 ---AL----MDINEPRFPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             ---HH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---Hh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               00    011244556666667777777777777777665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.93  E-value=4.5e-05  Score=55.18  Aligned_cols=98  Identities=9%  Similarity=-0.115  Sum_probs=67.9

Q ss_pred             CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHh
Q 038758           63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK  142 (354)
Q Consensus        63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~  142 (354)
                      .+...+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|...+++.                
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----------------   69 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA----------------   69 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH----------------
Confidence            345566777777778888888888888777664 445666777777777777777777666653                


Q ss_pred             cCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                             .++    ...+...|..+...+...|++++|...|+...
T Consensus        70 -------l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           70 -------LEL----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             -------HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------HHh----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                   110    11245667777888888888888888888776

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.93  E-value=3.5e-05  Score=55.30  Aligned_cols=62  Identities=6%  Similarity=-0.046  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      ++..+-..+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|.+.++...+.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~   71 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45555555666666666666666655542 223334555555555666666666655555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.0001  Score=52.53  Aligned_cols=97  Identities=13%  Similarity=-0.001  Sum_probs=71.3

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS  241 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a  241 (354)
                      ..|..+...+.+.|++++|.+.|++..  .. -+.+...|..+..++.+.|++++|...++...+..             
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al--~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------   68 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMI--KR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------------   68 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH--Hh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence            345666677778888888888887775  22 12245667777777778888888887777776654             


Q ss_pred             HHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                              +.+...|..+...+...|++++|...|++..+.
T Consensus        69 --------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           69 --------PNFVRAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence                    345677888888999999999999999988754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.90  E-value=2.3e-05  Score=61.10  Aligned_cols=125  Identities=8%  Similarity=-0.076  Sum_probs=81.8

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCC-------------
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPN-------------  197 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~-------------  197 (354)
                      ..+......|+++++.+.++.-..   .....+..+...+.+.|++++|.+.|++..  ... -.|+             
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCHHHHHHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchhhHHHHHHHH
Confidence            344444555566666666654332   134456777788888999999999998886  311 1111             


Q ss_pred             -cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758          198 -TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL  276 (354)
Q Consensus       198 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  276 (354)
                       ...+..+..++.+.|++++|...++...+..                     +.+...|..+..+|...|++++|...|
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~  145 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID---------------------KNNVKALYKLGVANMYFGFLEEAKENL  145 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHcccHHHHHHHH
Confidence             1567777777888888888888888777664                     346678888889999999999999999


Q ss_pred             HHHHHc
Q 038758          277 RDVIVA  282 (354)
Q Consensus       277 ~~m~~~  282 (354)
                      ++..+.
T Consensus       146 ~~al~~  151 (198)
T 2fbn_A          146 YKAASL  151 (198)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=0.00013  Score=53.38  Aligned_cols=92  Identities=11%  Similarity=0.042  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      .|..+...+...|++++|.+.|++..+.  .|+    ...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a  106 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence            5677778888899999999999988875  455    5667777788888899999999998888764 44566777888


Q ss_pred             HHHHhcCChhHHHHHHHhh
Q 038758          108 DLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~  126 (354)
                      .++...|++++|...|++.
T Consensus       107 ~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            8888888888888888775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.89  E-value=9.8e-05  Score=52.91  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccc--------cchhhH
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQD--------FLVNNS  135 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~--------~~~~~~  135 (354)
                      .+..+...+.+.|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|++.   .|+        ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            46678888999999999999999999875 556788999999999999999999999987   222        235667


Q ss_pred             HHHHHHhcCchhHHHHHhccCCC--CChhh
Q 038758          136 LIDFYAKCRYLKVSHCKFSKIKQ--KDLVS  163 (354)
Q Consensus       136 li~~~~~~~~~~~a~~~~~~~~~--~~~~~  163 (354)
                      +..++...|++++|.+.|++...  ||...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  118 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPEL  118 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence            78888999999999999987643  55443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.88  E-value=0.00017  Score=50.20  Aligned_cols=98  Identities=9%  Similarity=-0.102  Sum_probs=72.8

Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                      ...+..+...+...|++++|.+.|+...  .. .+.+...+..+...+...|++++|...++...+..            
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------   68 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAI--KL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------   68 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH--HH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------------
Confidence            3456667777888888888888888876  32 12245566667777778888888888877776654            


Q ss_pred             HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                               +.+...+..+...+...|++++|.+.+++..+.
T Consensus        69 ---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           69 ---------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ---------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence                     235667888888999999999999999998854

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.88  E-value=7.2e-05  Score=53.28  Aligned_cols=111  Identities=7%  Similarity=0.037  Sum_probs=75.9

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS  241 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a  241 (354)
                      ..|..+...+...|++++|...|+...  ... +.+...+..+...+...|++++|...+....+.....          
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------   71 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAK--ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------   71 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc----------
Confidence            345666677777788888888887775  321 2345556666677777777777777777766654310          


Q ss_pred             HHHhcccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758          242 CSVFNQLSTRD----VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL  295 (354)
Q Consensus       242 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  295 (354)
                              .++    ..+|..+...+.+.|++++|.+.|++..+.  .|+......+-
T Consensus        72 --------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  119 (131)
T 1elr_A           72 --------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ  119 (131)
T ss_dssp             --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred             --------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence                    112    556778888999999999999999999875  45655444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.84  E-value=5.6e-05  Score=53.67  Aligned_cols=88  Identities=7%  Similarity=-0.078  Sum_probs=55.0

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK  142 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~  142 (354)
                      .+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|...|++.    +.+...+..+..+|.+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45555666777888888888888877764 446667777777788888888887777764    2223333444444444


Q ss_pred             cCchhHHHHHhcc
Q 038758          143 CRYLKVSHCKFSK  155 (354)
Q Consensus       143 ~~~~~~a~~~~~~  155 (354)
                      .|++++|...|++
T Consensus        98 ~g~~~~A~~~~~~  110 (121)
T 1hxi_A           98 EHNANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            4444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.83  E-value=4.9e-05  Score=57.12  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=65.8

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcC
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR  144 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~  144 (354)
                      ...+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|...|++.                  
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------   71 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELA------------------   71 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence            3456666677778888888888888877664 445666777777777777777777766653                  


Q ss_pred             chhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                           .++    ...+...|..+..++.+.|++++|.+.|++..
T Consensus        72 -----l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           72 -----TVV----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             -----HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----HHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                 110    11245667777777778888888888887776

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.83  E-value=0.00039  Score=50.64  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=82.2

Q ss_pred             ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhhcccccccc
Q 038758          160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC  235 (354)
Q Consensus       160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  235 (354)
                      +...+..+...+.+.|++++|.+.|++..  .  ..|+    ...+..+..++...|++++|...++...+..       
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   95 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQAL--G--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------   95 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHH--T--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHH--H--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------
Confidence            55667788888999999999999999887  3  3455    5667777788888999999988888877664       


Q ss_pred             chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                                    +.+...|..+...+...|++++|...|++..+.  .|+..
T Consensus        96 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~  133 (148)
T 2dba_A           96 --------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNK  133 (148)
T ss_dssp             --------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCH
T ss_pred             --------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence                          345677888889999999999999999999865  45543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=2.2e-05  Score=55.35  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=62.9

Q ss_pred             hcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758           42 VLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  119 (354)
                      ..|++++|...|++..+.+  -+-+...+..+...+...|++++|.+.|+...+.. +-+...+..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            4588889999999888764  12344567778888888999999999999888775 55677788888888889999999


Q ss_pred             HHHHHhh
Q 038758          120 SGLFEEM  126 (354)
Q Consensus       120 ~~~~~~~  126 (354)
                      ...|++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.81  E-value=0.00019  Score=51.14  Aligned_cols=89  Identities=10%  Similarity=0.041  Sum_probs=66.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHH
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLL  107 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li  107 (354)
                      .+-..+...|++++|...|++..+..  |+.    ..+..+...+...|++++|...|+...+.. +.+   ...+..+.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            34556778889999999998887753  333    366677778888889999998888888764 223   45567777


Q ss_pred             HHHHhcCChhHHHHHHHhh
Q 038758          108 DLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~  126 (354)
                      .++...|++++|...|++.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            7888888888888887765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.81  E-value=0.00014  Score=64.75  Aligned_cols=115  Identities=12%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIK   95 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   95 (354)
                      .|+.+-..+.+.|++++|...|++..+.  .|+.                ..|..+..++.+.|++++|...++...+..
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            6778888888999999999999998874  3332                556666666677777777777777776654


Q ss_pred             cCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758           96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS  149 (354)
Q Consensus        96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a  149 (354)
                       +.+...|..+..+|...|++++|...|++.    +.+...+..+..++.+.++.+++
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             445556666666666667776666666654    22333444444444444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.72  E-value=8.7e-05  Score=66.26  Aligned_cols=129  Identities=11%  Similarity=0.008  Sum_probs=83.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC---CcC----CcccHHHHHHHHhccCChhhHHHHHHHHHHh---ccCC----Ccee
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKG---VRP----DHFVCPKVYKACSELKDYRVGKDVYDYMISI---KFEG----NACV  102 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~  102 (354)
                      +..+...|++++|..++++..+..   +-|    ...+++.|..+|...|++++|..++++..+.   -+.|    ...+
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            344566778888877777765431   122    2335677777777778888777777776543   1122    2345


Q ss_pred             hhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCCh----hhhHHHHHHHHhCCChh
Q 038758          103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL----VSWNAMLAGYALGGFRE  178 (354)
Q Consensus       103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~  178 (354)
                      ++.|...|...|++++|+.++++                       |.++++....||.    .+.+.+-.++...+.++
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~-----------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICK-----------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-----------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777776554                       5555555544332    24566667778888899


Q ss_pred             HHHHHHHHHH
Q 038758          179 EVTNLLDEME  188 (354)
Q Consensus       179 ~a~~~~~~m~  188 (354)
                      +|+.+|..++
T Consensus       453 ~ae~~~~~~~  462 (490)
T 3n71_A          453 QNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.71  E-value=0.0041  Score=52.58  Aligned_cols=168  Identities=11%  Similarity=-0.014  Sum_probs=97.8

Q ss_pred             hhHHHHHhccCCC---CChhhhHHHHHHHHhC-C-ChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc-----
Q 038758          146 LKVSHCKFSKIKQ---KDLVSWNAMLAGYALG-G-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK-----  215 (354)
Q Consensus       146 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~-----  215 (354)
                      ++++++.++.+..   .+...|+.--..+.+. + ++++++++++.+.  . .-+-|...|+.-.-.+.+.+..+     
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L--~-~dpkNy~AW~~R~wvl~~l~~~~~~~~~  181 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL--L-PDPKNYHTWAYLHWLYSHFSTLGRISEA  181 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT--S-SCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHHhccccccchh
Confidence            4444444444332   2334455444444443 4 6777777777775  2 22234445554444444444444     


Q ss_pred             ---ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCcC
Q 038758          216 ---LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ-------VVDALDLLRDVIVANVK  285 (354)
Q Consensus       216 ---~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~  285 (354)
                         ++.+..+.+.+..                     ..|...|+.....+.+.++       ++++++.+++....  .
T Consensus       182 ~~~eELe~~~k~I~~d---------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~  238 (349)
T 3q7a_A          182 QWGSELDWCNEMLRVD---------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--I  238 (349)
T ss_dssp             HHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--C
T ss_pred             hHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--C
Confidence               4444444444433                     4577778777777777665       67888888887754  4


Q ss_pred             CCH-hhHHHHHHHhhccCcc------------------cCc------------------cccchhHHHHHHHHHHhcCCh
Q 038758          286 PNT-VTIVSVLPACLKLAAL------------------PQG------------------LGTGSFVWNALIDMYGRCGAI  328 (354)
Q Consensus       286 p~~-~t~~~li~~~~~~~~~------------------~~~------------------~~~~~~~~~~li~~~~~~g~~  328 (354)
                      |+. ..|+.+-..+.+.|..                  ...                  -.++......|.+.|...|+.
T Consensus       239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~  318 (349)
T 3q7a_A          239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV  318 (349)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence            544 3444433333333322                  000                  136778889999999999999


Q ss_pred             hHHHHHhhcCC
Q 038758          329 QKSRKIFVLMP  339 (354)
Q Consensus       329 ~~A~~~~~~m~  339 (354)
                      ++|.++++.+.
T Consensus       319 ~~a~~~~~~l~  329 (349)
T 3q7a_A          319 DDAAKVFEKLS  329 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999986

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.69  E-value=0.0059  Score=54.70  Aligned_cols=290  Identities=13%  Similarity=0.065  Sum_probs=147.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHh-ccC-CCceehhhHHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISI-KFE-GNACVKRPLLDL  109 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~  109 (354)
                      |...+..+-. |+++.+..+|++....  .|+...|...+....+.+ ..+...++|+..+.. |.. .+...|...+..
T Consensus        18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f   94 (493)
T 2uy1_A           18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE   94 (493)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence            3333333333 6777788888777764  467777777776665555 245566777766654 322 244455555544


Q ss_pred             HH----hcCChhHHHHHHHhhc--cc---------------------------------------------------cch
Q 038758          110 FI----KCGRMEITSGLFEEMD--QD---------------------------------------------------FLV  132 (354)
Q Consensus       110 ~~----~~g~~~~a~~~~~~~~--~~---------------------------------------------------~~~  132 (354)
                      +.    ..|+++.+.++|++.-  |.                                                   ...
T Consensus        95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~  174 (493)
T 2uy1_A           95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN  174 (493)
T ss_dssp             TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred             HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence            33    2356666777776651  00                                                   001


Q ss_pred             hhHHHHHHHhc--Cc-----hhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758          133 NNSLIDFYAKC--RY-----LKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS  202 (354)
Q Consensus       133 ~~~li~~~~~~--~~-----~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~  202 (354)
                      |...+..-...  |-     .+.+..+|++...   .+...|-..+.-+.+.|+.+.|.++|+...  ..   |....+.
T Consensus       175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi--~~---P~~~~l~  249 (493)
T 2uy1_A          175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EM---SDGMFLS  249 (493)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH---CCSSHHH
T ss_pred             HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hC---CCcHHHH
Confidence            11111111110  00     1233445554432   234456556666677888888888888887  44   5544332


Q ss_pred             HHHHHhhhhcCccccchhhhHhhhhcc-------------cccc----------ccchhHHHHHHhcccCCCCcchHHHH
Q 038758          203 GVLAACAQVKGVKLGKAIHGYVLRHHI-------------HLST----------ACGFVICSCSVFNQLSTRDVVVWNSI  259 (354)
Q Consensus       203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~l  259 (354)
                      .   .++.....+   ++++.+.+.-.             .+..          +.+..+.|..+|++...|. .++...
T Consensus       250 ~---~y~~~~e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~  322 (493)
T 2uy1_A          250 L---YYGLVMDEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVF  322 (493)
T ss_dssp             H---HHHHHTTCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHH
T ss_pred             H---HHHhhcchh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHH
Confidence            2   222221111   11222222100             0000          3556777777877764333 233222


Q ss_pred             HH---HHHh-cCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcccCc------cccchhHHHHHHHHHHhcCCh
Q 038758          260 IS---AFVR-SGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAALPQG------LGTGSFVWNALIDMYGRCGAI  328 (354)
Q Consensus       260 i~---~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~  328 (354)
                      +.   .-.. .++.+.|..+|+...+.-  |+ ...+...+.-..+.|+.+.+      .......|...++.-...|+.
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~  400 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSM  400 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            21   1111 235788888888776542  33 22333444444555655544      233566777777777777888


Q ss_pred             hHHHHHhhcCC
Q 038758          329 QKSRKIFVLMP  339 (354)
Q Consensus       329 ~~A~~~~~~m~  339 (354)
                      +.+.+++++..
T Consensus       401 ~~~r~v~~~~~  411 (493)
T 2uy1_A          401 ELFRELVDQKM  411 (493)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.67  E-value=3e-05  Score=69.42  Aligned_cols=113  Identities=9%  Similarity=-0.049  Sum_probs=86.5

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~  147 (354)
                      ...+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.+.+++.    +.+...|..+..+|.+.|+++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            345667899999999999998874 556788999999999999999999999987    445677888888999999999


Q ss_pred             HHHHHhccCCC--C-ChhhhHHHHHH--HHhCCChhHHHHHHH
Q 038758          148 VSHCKFSKIKQ--K-DLVSWNAMLAG--YALGGFREEVTNLLD  185 (354)
Q Consensus       148 ~a~~~~~~~~~--~-~~~~~~~li~~--~~~~~~~~~a~~~~~  185 (354)
                      +|.+.|++..+  | +...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999887653  3 34455555555  778889999998887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.65  E-value=0.00065  Score=48.24  Aligned_cols=98  Identities=12%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc----chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT----ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                      ..+...+.+.|++++|.+.|+...  ..  .|+.    ..+..+..++.+.|++++|...++...+...           
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~--~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-----------   70 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFL--EL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-----------   70 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH--HH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH--HH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----------
Confidence            345566777888888888888876  32  2332    3566666777788888888888877776542           


Q ss_pred             HHHHhcccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          241 SCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       241 a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                                .+   ...+..+...+.+.|++++|...|++..+.  .|+..
T Consensus        71 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~  110 (129)
T 2xev_A           71 ----------THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD  110 (129)
T ss_dssp             ----------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred             ----------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence                      12   345677788899999999999999999865  35544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.63  E-value=0.00019  Score=61.82  Aligned_cols=119  Identities=8%  Similarity=0.003  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------C-cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--------------V-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF   96 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~   96 (354)
                      .|..+-..+.+.|++++|...|++..+.-              . +.+...|..+...+.+.|++++|.+.++...+.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            67888888999999999999999887610              1 1234456677777778888888888888877654 


Q ss_pred             CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHH
Q 038758           97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHC  151 (354)
Q Consensus        97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~  151 (354)
                      +.+...+..+..+|...|++++|.+.|++.    +.+...+..+...+.+.++.+++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777788888888887777765    2234444555555555555555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.60  E-value=5.7e-05  Score=52.27  Aligned_cols=58  Identities=16%  Similarity=0.090  Sum_probs=25.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      +..+...+...|++++|.+.|+...+.. +.+...+..+..++.+.|++++|.+.|++.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3333444444444444444444444332 223334444444444444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.59  E-value=2.4e-05  Score=55.16  Aligned_cols=85  Identities=13%  Similarity=-0.097  Sum_probs=50.0

Q ss_pred             ccCChhhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc
Q 038758           77 ELKDYRVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS  154 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (354)
                      ..|++++|...|+...+.+  -+.+...+..+..+|...|++++|...|++.                       .+.  
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-----------------------l~~--   56 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG-----------------------VKQ--   56 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHH--
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------HHh--
Confidence            3577888888888887753  2334556777777777777777777776664                       000  


Q ss_pred             cCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       155 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                        ...+...+..+..++.+.|++++|.+.|++..
T Consensus        57 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           57 --FPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              01234455556666666666666666666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.57  E-value=0.00017  Score=61.36  Aligned_cols=138  Identities=11%  Similarity=-0.013  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+.+.|++++|...|++....  .|+...       +...++.+.+...+   .       ...|..+..+|.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~  241 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence            5666777777888888888888887654  233221       11222222222111   0       125667777777


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHH-HHhCCChhHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAG-YALGGFREEVTNL  183 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~~~a~~~  183 (354)
                      +.|++++|...+++.    +.+...|..+..+|...|++++|...|++..+  | +...+..+... ....+..+.+.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777887777777766    33556677777778888888888888877764  3 23344444433 2344566777778


Q ss_pred             HHHHH
Q 038758          184 LDEME  188 (354)
Q Consensus       184 ~~~m~  188 (354)
                      |..|.
T Consensus       322 ~~~~l  326 (338)
T 2if4_A          322 YKGIF  326 (338)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            87775

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.56  E-value=6e-05  Score=67.27  Aligned_cols=131  Identities=7%  Similarity=-0.085  Sum_probs=89.6

Q ss_pred             HhccCChhhHHHHHHHHHHhc---cCC----CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           75 CSELKDYRVGKDVYDYMISIK---FEG----NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        75 ~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      +...|++++|..++++..+..   +.|    ...+++.|..+|...|++++|+.++++                      
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~----------------------  376 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR----------------------  376 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence            446777888877777766431   122    234677777777777777777776554                      


Q ss_pred             HHHHHhccCCCC---C-hhhhHHHHHHHHhCCChhHHHHHHHHHHhh---hcCC-CCC-cchHHHHHHHhhhhcCccccc
Q 038758          148 VSHCKFSKIKQK---D-LVSWNAMLAGYALGGFREEVTNLLDEMEMI---QTDM-QPN-TISLSGVLAACAQVKGVKLGK  218 (354)
Q Consensus       148 ~a~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-~p~-~~t~~~ll~~~~~~~~~~~a~  218 (354)
                       |+.++++...+   + ..+++.|...|...|++++|..++++....   ..|- .|+ ..+.+.+-.++...+..++|+
T Consensus       377 -aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          377 -MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             -HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence             44444444433   2 356889999999999999999998876410   1121 233 455677777888999999999


Q ss_pred             hhhhHhhhhc
Q 038758          219 AIHGYVLRHH  228 (354)
Q Consensus       219 ~~~~~~~~~~  228 (354)
                      .++..+.+.-
T Consensus       456 ~~~~~~~~~~  465 (490)
T 3n71_A          456 FMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.51  E-value=0.00045  Score=51.58  Aligned_cols=94  Identities=9%  Similarity=0.036  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK--------G---------VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      .+...-..+.+.|++++|...|.+....        .         -+.+...|..+..++.+.|+++.|...++...+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            5666777888999999999999998764        0         0112345777777888888888888888888876


Q ss_pred             ccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      . +.+...|..+..+|...|++++|...|++.
T Consensus        93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            5 556777888888888888888888888775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.48  E-value=0.00032  Score=62.38  Aligned_cols=132  Identities=10%  Similarity=-0.076  Sum_probs=70.2

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcC
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCR  144 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~  144 (354)
                      ..|..+...+.+.|+++.|...|+...+..  |+...+.           .+..    .+. ......|..+..+|.+.|
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~-----------~~~~----~~~~~~~~~~~~nla~~~~~~g  331 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLS-----------EKES----KASESFLLAAFLNLAMCYLKLR  331 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC-----------HHHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCC-----------hHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence            356667777888888999998888888753  2221000           0000    000 011233444444445555


Q ss_pred             chhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccc
Q 038758          145 YLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGK  218 (354)
Q Consensus       145 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~  218 (354)
                      ++++|+..|++..+   .+...|..+..+|.+.|++++|...|+...  .  +.| +...+..+..++.+.++.+++.
T Consensus       332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al--~--l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL--E--VNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--T--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555444432   245556666677777777777777777665  2  233 2345555555666666555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.40  E-value=0.00095  Score=49.78  Aligned_cols=105  Identities=8%  Similarity=-0.009  Sum_probs=77.5

Q ss_pred             hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-----C---------CC-CcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-----M---------QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~---------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      ..+......+.+.|++++|...|+........     -         .| +...|..+..++.+.|+++.|...+...++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45666777788888888888888877521000     0         12 235677777888888999888888888777


Q ss_pred             hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      ..                     +.+...|..+..+|...|++++|...|++..+.  .|+..
T Consensus        92 ~~---------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           92 RE---------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             HS---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             cC---------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence            64                     346778888899999999999999999998865  46544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.37  E-value=0.0004  Score=59.10  Aligned_cols=144  Identities=8%  Similarity=-0.017  Sum_probs=78.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      +..+...+.+.|+++.|...|+...+.  .|+..       .+...|+.+++...+.     ...|..+..+|.+.|+++
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~-----~~~~~nla~~~~~~g~~~  247 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK-----NPCHLNIAACLIKLKRYD  247 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH-----THHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH-----HHHHHHHHHHHHHcCCHH
Confidence            555666777888888888888887754  23221       1223344444433222     247888999999999999


Q ss_pred             HHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHHHHHHH-hhhhcCccccchhhh
Q 038758          148 VSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLSGVLAA-CAQVKGVKLGKAIHG  222 (354)
Q Consensus       148 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~~ll~~-~~~~~~~~~a~~~~~  222 (354)
                      +|...+++..+   .+...|..+..+|...|++++|.+.|+...    .+.|+. ..+..+... ....+..+.+..+|.
T Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al----~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ----KYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT----C-------------------------------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988753   356788899999999999999999999886    234543 334444333 234566778888888


Q ss_pred             Hhhhhcc
Q 038758          223 YVLRHHI  229 (354)
Q Consensus       223 ~~~~~~~  229 (354)
                      .+.....
T Consensus       324 ~~l~~~p  330 (338)
T 2if4_A          324 GIFKGKD  330 (338)
T ss_dssp             -------
T ss_pred             HhhCCCC
Confidence            8876544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00016  Score=49.88  Aligned_cols=91  Identities=13%  Similarity=0.064  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-------ceehh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-------ACVKR  104 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~  104 (354)
                      .|..+-..+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++...+.  .|+       ...+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHH
Confidence            46677788899999999999999998864 335667888888999999999999999999875  343       33444


Q ss_pred             hHHHHHHhcCChhHHHHHHHh
Q 038758          105 PLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus       105 ~li~~~~~~g~~~~a~~~~~~  125 (354)
                      .+..++...|+.+.|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            455555555555555444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.35  E-value=0.057  Score=48.33  Aligned_cols=171  Identities=12%  Similarity=-0.077  Sum_probs=87.9

Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHH-HHHhccC---C
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS-HCKFSKI---K  157 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~---~  157 (354)
                      +.+..+|+.+.... +.+...|-..+..+...|+++.|..++++.-..+... .+--.|+.....++. ..+.+..   .
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~-~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM-FLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH-HHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            34567777777643 5556677777777778888888888888762221111 111122222111111 1111111   0


Q ss_pred             -------C--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh-hcCccccchhhhHhhhh
Q 038758          158 -------Q--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-VKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       158 -------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~  227 (354)
                             .  .....|-..+....+.++.+.|..+|+..+  ..+.  +...|......-.. .++.+.|..+|+...+.
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~--~~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG--NEGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TSCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh--CCCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence                   0  112345555666666777888888888773  3322  22222211111112 23577788888776664


Q ss_pred             ccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       228 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                      ..                     .+...|...+....+.|+.+.|..+|++.
T Consensus       350 ~~---------------------~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          350 HP---------------------DSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             CT---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             CC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            32                     12223444555555666666666666665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.33  E-value=0.00095  Score=46.47  Aligned_cols=78  Identities=10%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      +.+++.|++..+.. +.+...+..+...+...|++++|.+.|+...+.. +.+...+..+..+|...|++++|...|++.
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35677777777653 3355667777788888888888888888888764 445667788888888888888888888775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.28  E-value=0.00035  Score=60.22  Aligned_cols=133  Identities=6%  Similarity=-0.024  Sum_probs=79.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~  147 (354)
                      +..+...+.+.|++++|.+.|+...+.-  ++..          .....+.+.   ..-+.+...|..+..+|.+.|+++
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~---~~~~~~~~~~~nla~~~~~~g~~~  290 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGA---KLQPVALSCVLNIGACKLKMSDWQ  290 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHG---GGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHH---HHHHHHHHHHHHHHHHHHhccCHH
Confidence            5566677778888888888888877631  0000          000000000   000123345556666666666666


Q ss_pred             HHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccch
Q 038758          148 VSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKA  219 (354)
Q Consensus       148 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~  219 (354)
                      +|...+++..+   .+...|..+..+|.+.|++++|.+.|++..  .  +.| +...+..+..++.+.++.+++.+
T Consensus       291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al--~--l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ--E--IAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665543   345677788888889999999999998886  2  234 34455556666666666555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.25  E-value=0.0015  Score=48.31  Aligned_cols=93  Identities=14%  Similarity=0.055  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--------c-----ccHHHHHHHHhccCChhhHHHHHHHHHHh----
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--------H-----FVCPKVYKACSELKDYRVGKDVYDYMISI----   94 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----   94 (354)
                      .+...-..+.+.|++++|+..|++..+.  .|+        .     ..|..+-.++.+.|++++|...++..++.    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            3455566778899999999999998875  344        1     26788888888999999999999888875    


Q ss_pred             -ccCC-Cceeh----hhHHHHHHhcCChhHHHHHHHhh
Q 038758           95 -KFEG-NACVK----RPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        95 -~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                       .+.| +...|    .....++...|++++|+..|++.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence             1133 44566    77778888888888888887765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.24  E-value=0.01  Score=49.84  Aligned_cols=141  Identities=6%  Similarity=-0.084  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGL  122 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~  122 (354)
                      +++++.+++.+.... +-+...|+.--..+...+  +++++..+++.+.+.. +.|...|+.-..++...|. .+++.+.
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            678999999998764 345566776666666666  4789999999999876 6788888888888888888 5889988


Q ss_pred             HHhh----ccccchhhHHHHHHHhc--------------CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhC-------
Q 038758          123 FEEM----DQDFLVNNSLIDFYAKC--------------RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALG-------  174 (354)
Q Consensus       123 ~~~~----~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~-------  174 (354)
                      ++++    +.+...|+.....+.+.              +.++++.+.+++...  | |...|+-+--.+.+.       
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            8888    55667777666655554              457778777776652  3 556676544444444       


Q ss_pred             ----CChhHHHHHHHHHH
Q 038758          175 ----GFREEVTNLLDEME  188 (354)
Q Consensus       175 ----~~~~~a~~~~~~m~  188 (354)
                          +.++++++.++++.
T Consensus       248 ~~~~~~l~~el~~~~ell  265 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQ  265 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence                34678888888886

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.22  E-value=0.002  Score=42.29  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..+-..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            45566667777888888888888877653 2345556677777778888888888888777653 334445555555444


Q ss_pred             h
Q 038758          112 K  112 (354)
Q Consensus       112 ~  112 (354)
                      +
T Consensus        89 ~   89 (91)
T 1na3_A           89 K   89 (91)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.08  E-value=0.045  Score=45.92  Aligned_cols=227  Identities=8%  Similarity=0.004  Sum_probs=138.1

Q ss_pred             HHHhcCChh-HHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCC----------hhhHHHHHHHHHHhccCCCceehhhH
Q 038758           39 MYNVLGYYE-EIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKD----------YRVGKDVYDYMISIKFEGNACVKRPL  106 (354)
Q Consensus        39 ~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l  106 (354)
                      ...+.|.++ +|+++...+...  .|+..| |+.--..+...+.          ++++..+++.+.+.. +.+..+|+.-
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR  114 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR  114 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            344566666 799999999875  455444 4433222222222          678888999888765 6678888888


Q ss_pred             HHHHHhcCC--hhHHHHHHHhh----ccccchhhHHHHHHHhcCc-hhHHHHHhccCCC---CChhhhHHHHHHHHhC--
Q 038758          107 LDLFIKCGR--MEITSGLFEEM----DQDFLVNNSLIDFYAKCRY-LKVSHCKFSKIKQ---KDLVSWNAMLAGYALG--  174 (354)
Q Consensus       107 i~~~~~~g~--~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--  174 (354)
                      ..++.+.|+  ++++..+++++    +.+-.+|+.-...+.+.|. ++++.+.++++.+   .|...|+.....+.+.  
T Consensus       115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            888888884  78999999988    5566778777777777787 5888888887764   3555676655555443  


Q ss_pred             ------------CChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhh-cCccccchhhhHhhhhccccccccchhHH
Q 038758          175 ------------GFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQV-KGVKLGKAIHGYVLRHHIHLSTACGFVIC  240 (354)
Q Consensus       175 ------------~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  240 (354)
                                  +.++++++.++...  .  ..|+ ...|+-+--.+.+. |.....              ....+.+++
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai--~--~~P~d~SaW~Y~r~ll~~~~~~~~~~--------------~~~~~~l~~  256 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAF--F--TDPNDQSAWFYHRWLLGAGSGRCELS--------------VEKSTVLQS  256 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHH--H--HSTTCHHHHHHHHHHHHSSSCGGGCC--------------HHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHhccCccccc--------------hHHHHHHHH
Confidence                        34677888887775  2  3344 34444332222222 100000              002234455


Q ss_pred             HHHHhcccC--CCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          241 SCSVFNQLS--TRDVVVWNSIISA-----FVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       241 a~~~~~~~~--~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      +++.++++.  .||. .|+.+-.+     ....|..+++...+.++.+.  .|...
T Consensus       257 el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~  309 (331)
T 3dss_A          257 ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA  309 (331)
T ss_dssp             HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred             HHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence            555555544  4554 45432222     22457778888888888754  45443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.06  E-value=0.0016  Score=47.23  Aligned_cols=113  Identities=4%  Similarity=-0.089  Sum_probs=74.4

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChh
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRME  117 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~  117 (354)
                      -.+++++|++.|++..+.| .|+..    |-..|...+.+++|.+.|+...+.|   +...+..|-..|..    .++++
T Consensus         7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence            3457788888888888776 33322    5555666667777888888777664   44556666666666    56666


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC-CCChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhc
Q 038758          118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-QKDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQT  192 (354)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~  192 (354)
                      +|.+.|++.                              . ..+...+..|-..|..    .+++++|.++|+...  +.
T Consensus        79 ~A~~~~~~A------------------------------a~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~~  126 (138)
T 1klx_A           79 KAAQYYSKA------------------------------CGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC--RL  126 (138)
T ss_dssp             HHHHHHHHH------------------------------HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT
T ss_pred             HHHHHHHHH------------------------------HcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH--HC
Confidence            666666553                              1 1355566667777777    778888888888776  54


Q ss_pred             CC
Q 038758          193 DM  194 (354)
Q Consensus       193 ~~  194 (354)
                      |.
T Consensus       127 g~  128 (138)
T 1klx_A          127 GS  128 (138)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.02  E-value=0.00088  Score=48.65  Aligned_cols=114  Identities=10%  Similarity=-0.120  Sum_probs=80.3

Q ss_pred             cCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758           78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus        78 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      .+++++|.+.|+...+.| .|...    |-..|...+.+++|.+.|++.                             ..
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~A-----------------------------a~   53 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKA-----------------------------CE   53 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHH-----------------------------HH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHH-----------------------------Hc
Confidence            456778888888887776 33333    555566666666666655542                             01


Q ss_pred             CCChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcc
Q 038758          158 QKDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       158 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~  229 (354)
                      ..+...+..|-..|..    .+++++|.++|+..-  +.|.   ...+..+-..|..    .++.++|...++...+.|.
T Consensus        54 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--GLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH--cCCC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            2466677778888887    789999999999987  5543   4456666666766    7899999999999888765


Q ss_pred             c
Q 038758          230 H  230 (354)
Q Consensus       230 ~  230 (354)
                      .
T Consensus       129 ~  129 (138)
T 1klx_A          129 E  129 (138)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.02  E-value=0.0048  Score=58.90  Aligned_cols=154  Identities=9%  Similarity=0.020  Sum_probs=97.0

Q ss_pred             HhccCChhhHHH-HHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHh
Q 038758           75 CSELKDYRVGKD-VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus        75 ~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                      ....++++.|.+ ++..+      |+......++..+.+.|..+.|.++.+.-       ..-.......|++++|.++.
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~~~f~~~l~~~~~~~A~~~~  675 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------DQKFELALKVGQLTLARDLL  675 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------HHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------chheehhhhcCCHHHHHHHH
Confidence            345566766655 44111      10112266777778888888887665432       12244566789999999988


Q ss_pred             ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758          154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST  233 (354)
Q Consensus       154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  233 (354)
                      +.+.  +...|..+...+.+.++++.|.+.|..+.           -|..+...+...++.+...++-+.....|.    
T Consensus       676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~-----------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----  738 (814)
T 3mkq_A          676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH-----------DLESLFLLHSSFNNKEGLVTLAKDAETTGK----  738 (814)
T ss_dssp             TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred             HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----------ChhhhHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence            8774  56789999999999999999999999886           144555555556666655555444443332    


Q ss_pred             ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758          234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI  280 (354)
Q Consensus       234 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  280 (354)
                                            ++.-...|.+.|++++|++++.++.
T Consensus       739 ----------------------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          739 ----------------------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             ----------------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             ----------------------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                                  3444445555666666666665553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.00  E-value=0.0015  Score=45.42  Aligned_cols=78  Identities=9%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh
Q 038758           83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV  162 (354)
Q Consensus        83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  162 (354)
                      .+.+.|+...+.. +.+...+..+...|...|++++|...|++.                       .++    ...+..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----------------------l~~----~p~~~~   54 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAA-----------------------LDF----DPTYSV   54 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHH----CTTCHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH-----------------------HHH----CCCcHH
Confidence            4566676666553 445667777777777788888877776654                       000    112344


Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .|..+...+...|++++|...|+...
T Consensus        55 ~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           55 AWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56666667777777777777777665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.98  E-value=0.006  Score=45.06  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC----C-----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccc
Q 038758          164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP----N-----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA  234 (354)
Q Consensus       164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p----~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  234 (354)
                      +......+.+.|++++|++.|+...+.......    +     ...|...-.++.+.|++++|...++..++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l-------   86 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-------   86 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            334445566667777777777666521111100    1     115666666666677777666666555443       


Q ss_pred             cchhHHHHHHhcccC---CCCcchH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          235 CGFVICSCSVFNQLS---TRDVVVW----NSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       235 ~~~~~~a~~~~~~~~---~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                                |++-.   +.+...|    ...-.++...|++++|+..|++..+
T Consensus        87 ----------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           87 ----------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             ----------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence                      11111   2345677    8888999999999999999999875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.95  E-value=0.003  Score=42.71  Aligned_cols=60  Identities=7%  Similarity=0.061  Sum_probs=33.6

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ..+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555555556666666666666655543 334445555666666666666666555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.93  E-value=0.0026  Score=41.72  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ...+..+...+...|++++|.+.++...+.. +.+...+..+..++.+.|++++|...|++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3456677777888889999999998888764 445667778888888888888888887775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.80  E-value=0.031  Score=51.02  Aligned_cols=168  Identities=8%  Similarity=-0.023  Sum_probs=123.0

Q ss_pred             hcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCC----------hhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           42 VLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKD----------YRVGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        42 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .....++|++.++++...  .|+.. .|+.--..+...|+          ++++.+.++.+.+.. +.+..+|+.-..++
T Consensus        41 ~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            334456789999999886  44443 46655455555555          899999999999876 66788888888888


Q ss_pred             HhcC--ChhHHHHHHHhh----ccccchhhHHHHHHHhcC-chhHHHHHhccCCCC---ChhhhHHHHHHHHhC------
Q 038758          111 IKCG--RMEITSGLFEEM----DQDFLVNNSLIDFYAKCR-YLKVSHCKFSKIKQK---DLVSWNAMLAGYALG------  174 (354)
Q Consensus       111 ~~~g--~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~------  174 (354)
                      .+.|  +++++.+.++++    +.+..+|+.-...+.+.| .++++.+.++++.+.   |...|+.....+.+.      
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            9999  669999999998    556778888888888888 899999999988763   456677666665553      


Q ss_pred             --------CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccc
Q 038758          175 --------GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       175 --------~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~  216 (354)
                              +.++++++.++...  .  +.| |...|...-..+.+.+..++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai--~--~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAF--F--TDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHH--H--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHH--h--hCCCCccHHHHHHHHHhcCCCccc
Confidence                    44688888888776  2  334 45567666666666666444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.71  E-value=0.0038  Score=46.00  Aligned_cols=72  Identities=8%  Similarity=-0.018  Sum_probs=46.7

Q ss_pred             HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh----------hHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR----------VGKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .+.+.+++|.+.++...+.. +-+...|..+-.++...++++          +|+..|++..+.. +.+...|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            45567788888888877764 335566666666776666543          6777777766654 33455666676666


Q ss_pred             HhcC
Q 038758          111 IKCG  114 (354)
Q Consensus       111 ~~~g  114 (354)
                      ...|
T Consensus        91 ~~lg   94 (158)
T 1zu2_A           91 TSFA   94 (158)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.58  E-value=0.0084  Score=40.43  Aligned_cols=81  Identities=15%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~  110 (354)
                      .|..+-..+.+.|++++|...|++..+.+ +-+...|..+..++...|++++|.+.|+...+..- .++......+...+
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l   87 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK   87 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence            56778888999999999999999999875 33566788999999999999999999999886531 34444444444444


Q ss_pred             Hhc
Q 038758          111 IKC  113 (354)
Q Consensus       111 ~~~  113 (354)
                      ...
T Consensus        88 ~~~   90 (100)
T 3ma5_A           88 LKA   90 (100)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.37  E-value=0.0028  Score=55.57  Aligned_cols=64  Identities=5%  Similarity=-0.169  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHhCCChhHHHHHHHHHHhhh---cC-CCCC-cchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          163 SWNAMLAGYALGGFREEVTNLLDEMEMIQ---TD-MQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                      +++.|...|...|++++|..++++.....   .| -.|+ ..+++.+-..|...|++++|+.++++.++
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            45555555555555555555555442100   01 1122 34455555555555555555555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.35  E-value=0.0066  Score=53.25  Aligned_cols=88  Identities=10%  Similarity=-0.035  Sum_probs=50.6

Q ss_pred             cCChhhHHHHHHHHHHhc---cCCC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHH
Q 038758           78 LKDYRVGKDVYDYMISIK---FEGN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH  150 (354)
Q Consensus        78 ~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  150 (354)
                      .|++++|..++++..+..   +.|+    ..+++.|..+|...|++++|+.++++                       ++
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------------------aL  367 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK-----------------------II  367 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------HH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------------------HH
Confidence            345555555555554321   1121    23455555555555555555555443                       33


Q ss_pred             HHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          151 CKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       151 ~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      .++++...   |+ ..+++.|...|...|++++|..+|++..
T Consensus       368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            33333332   33 3468888899999999999999888775

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.34  E-value=0.0027  Score=46.80  Aligned_cols=111  Identities=10%  Similarity=0.007  Sum_probs=65.8

Q ss_pred             hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758           76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK  155 (354)
Q Consensus        76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (354)
                      .+.+.+++|.+.++...+.. +.+...|..+..++...++++.+....+                    .+++|+..|++
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------~~~eAi~~le~   71 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ--------------------MIQEAITKFEE   71 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------HHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh--------------------HHHHHHHHHHH
Confidence            45567888888888888776 6677888888888888877653322111                    13344444444


Q ss_pred             CCC--C-ChhhhHHHHHHHHhC-----------CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758          156 IKQ--K-DLVSWNAMLAGYALG-----------GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV  211 (354)
Q Consensus       156 ~~~--~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~  211 (354)
                      ..+  | +...|..+-.+|...           |++++|.+.|++..    .+.|+...|..-+...-+.
T Consensus        72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV----DEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHTH
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHhC
Confidence            332  2 234455555555544           36666666666665    3456666666655554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.34  E-value=0.011  Score=51.79  Aligned_cols=90  Identities=11%  Similarity=0.018  Sum_probs=62.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCC---CcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhc---cCC----Cce
Q 038758           36 MMGMYNVLGYYEEIVNLFYLMIDKG---VRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIK---FEG----NAC  101 (354)
Q Consensus        36 li~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~  101 (354)
                      .+..+.+.|++++|.+++++..+..   +.|+    ..+++.|..+|...|++++|..++++..+.-   +.|    ...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3455667788888888888876542   2232    3357778888888888888888888776431   122    234


Q ss_pred             ehhhHHHHHHhcCChhHHHHHHHh
Q 038758          102 VKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus       102 ~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      +++.|...|...|++++|+.++++
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            677788888888888888877665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.27  E-value=0.024  Score=53.99  Aligned_cols=95  Identities=14%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             HhcCChhHHHH-HHHhhc-cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          111 IKCGRMEITSG-LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       111 ~~~g~~~~a~~-~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ...+++++|.+ ++..++ ..  ....++..+.+.|..++|.++.+.   +.     .-.......|+++.|.++.+.+.
T Consensus       610 ~~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~---~~-----~~f~~~l~~~~~~~A~~~~~~~~  679 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD---QD-----QKFELALKVGQLTLARDLLTDES  679 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC---HH-----HHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC---cc-----hheehhhhcCCHHHHHHHHHhhC
Confidence            34556666655 443222 11  114455555555666665555432   10     11222344566666655544332


Q ss_pred             hhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758          189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY  223 (354)
Q Consensus       189 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  223 (354)
                              +...|..+...+.+.++++.|++.|..
T Consensus       680 --------~~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          680 --------AEMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             --------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    334555555555555555555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.22  E-value=0.0046  Score=54.26  Aligned_cols=93  Identities=11%  Similarity=-0.104  Sum_probs=55.1

Q ss_pred             HHHhccCChhhHHHHHHHHHHhc---cCCC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCc
Q 038758           73 KACSELKDYRVGKDVYDYMISIK---FEGN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY  145 (354)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~  145 (354)
                      ..+.+.|++++|...++...+..   +.|+    ..+++.|..+|...|++++|+.++++                    
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~--------------------  354 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR--------------------  354 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH--------------------
Confidence            33445566666666666655321   1121    23455566666666666666665444                    


Q ss_pred             hhHHHHHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          146 LKVSHCKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       146 ~~~a~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                         ++.+++....   |+ ..+++.|...|...|++++|..++++..
T Consensus       355 ---~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          355 ---TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             ---HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence               3333333322   22 3468888889999999999999888774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.21  E-value=0.053  Score=49.44  Aligned_cols=146  Identities=6%  Similarity=-0.083  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCCC
Q 038758           32 NWTSMMGMYNVLGY----------YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEGN   99 (354)
Q Consensus        32 ~y~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~   99 (354)
                      +|+.=-..+...|+          ++++++.++.+.+.. +-+...|+.--..+.+.+  +++++.+.++.+.+.. +-|
T Consensus        65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N  142 (567)
T 1dce_A           65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERN  142 (567)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-ccc
Confidence            66665555555566          899999999999875 345666777777778888  6699999999999986 668


Q ss_pred             ceehhhHHHHHHhcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhc--------------CchhHHHHHhccCCC--
Q 038758          100 ACVKRPLLDLFIKCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKC--------------RYLKVSHCKFSKIKQ--  158 (354)
Q Consensus       100 ~~~~~~li~~~~~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~--  158 (354)
                      ...|+.-..++.+.| ..+++.+.++++    +.+...|+.....+.+.              +.++++.+.+++...  
T Consensus       143 ~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~  222 (567)
T 1dce_A          143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD  222 (567)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence            888988888888888 899999999988    45667777766666553              556777777765542  


Q ss_pred             C-ChhhhHHHHHHHHhCCChhH
Q 038758          159 K-DLVSWNAMLAGYALGGFREE  179 (354)
Q Consensus       159 ~-~~~~~~~li~~~~~~~~~~~  179 (354)
                      | |...|+..-..+.+.++.++
T Consensus       223 P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          223 PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             CCCccHHHHHHHHHhcCCCccc
Confidence            3 56667776666666665443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.15  E-value=0.015  Score=38.77  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=39.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIK   95 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   95 (354)
                      ...+.+.|++++|...|++..+.. +.+.. .+..+...+...|++++|.+.|+...+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            345667777888888887777653 22334 56666677777777777877777777653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.04  E-value=0.0011  Score=57.76  Aligned_cols=245  Identities=9%  Similarity=0.071  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .|..|-.+....++..+|.+-|-+      .-|...|..++.+..+.|.++.-.+++....+.  ..++.+=+.|+-+|+
T Consensus        56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA  127 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA  127 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence            777888888888877777665522      236667888899888999998888887765544  344455668888999


Q ss_pred             hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC------------------------CChhhhHHH
Q 038758          112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------------------------KDLVSWNAM  167 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l  167 (354)
                      +.++..+.++++..  |+..-...+.+-|...|.++.|.-+|..+..                        .++.||..+
T Consensus       128 k~~rL~elEefl~~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV  205 (624)
T 3lvg_A          128 KTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV  205 (624)
T ss_dssp             TSCSSSTTTSTTSC--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred             hhCcHHHHHHHHcC--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence            98888776655443  5555556677777777777777777766642                        356677777


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758          168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ  247 (354)
Q Consensus       168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  247 (354)
                      -.+|+..+++..|.-.=-.+.       ........+++.|-..|.+++...+++.-....                   
T Consensus       206 ~~ACvd~~EfrLAqicGLniI-------vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-------------------  259 (624)
T 3lvg_A          206 CFACVDGKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLE-------------------  259 (624)
T ss_dssp             THHHHHSCTTTTTTHHHHHHH-------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-------------------
T ss_pred             HHHHhCchHHHHHHHhcchhc-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------------------
Confidence            777777777766543322222       111222334455666666666666665444211                   


Q ss_pred             cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758          248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA  327 (354)
Q Consensus       248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  327 (354)
                        ......|+-|--.|+|- ++++.++-++-.-   -+.|.   .-+|++|.+..           .|.-++-.|++-.+
T Consensus       260 --rAHmGmFTELaILYsKY-~PeKlmEHlklf~---sriNi---pKviracE~ah-----------LW~ElvfLY~~ydE  319 (624)
T 3lvg_A          260 --RAHMGMFTELAILYSKF-KPQKMREHLELFW---SRVNI---PKVLRAAEQAH-----------LWAELVFLYDKYEE  319 (624)
T ss_dssp             --TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSS---SSSCC---TTTHHHHTTTT-----------CHHHHHHHHHHHTC
T ss_pred             --chhHHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhccH---HHHHHHHHHHh-----------hHHHHHHHHhcchh
Confidence              45667788887777775 3444444333221   12222   23455555444           37777777777777


Q ss_pred             hhHHH
Q 038758          328 IQKSR  332 (354)
Q Consensus       328 ~~~A~  332 (354)
                      +|.|.
T Consensus       320 ~DnA~  324 (624)
T 3lvg_A          320 YDNAI  324 (624)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.02  E-value=0.24  Score=35.07  Aligned_cols=47  Identities=19%  Similarity=0.113  Sum_probs=27.6

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD   89 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   89 (354)
                      +...|..++..++..+....   .+..-||.+|--....-+-+...++++
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd   63 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD   63 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH
Confidence            34457777777777777653   355557776655555545444444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.02  E-value=0.019  Score=38.28  Aligned_cols=55  Identities=7%  Similarity=0.015  Sum_probs=43.0

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhccCCCce-ehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           71 VYKACSELKDYRVGKDVYDYMISIKFEGNAC-VKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      ....+...|++++|.+.++...+.. +.+.. .+..+..+|...|++++|.+.|++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445677888999999998888764 44556 7788888888888888888888876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.079  Score=39.64  Aligned_cols=49  Identities=12%  Similarity=0.154  Sum_probs=25.0

Q ss_pred             HHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      ......|+++.|.++.+++ .+...|..|.....+.|+++-|++.|++..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3345556666666655544 234445555555555555555555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.66  E-value=0.053  Score=45.96  Aligned_cols=136  Identities=7%  Similarity=-0.001  Sum_probs=74.3

Q ss_pred             CcCCcccHHHHHHHHhc-----cCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhc---C-----Chh---HHHHHH
Q 038758           61 VRPDHFVCPKVYKACSE-----LKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKC---G-----RME---ITSGLF  123 (354)
Q Consensus        61 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~---g-----~~~---~a~~~~  123 (354)
                      .+.+...|...+++...     ..+..+|..+|++..+.  .|+ ...+..+..+|...   +     ...   .+.+..
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            35566677777766542     23457788888888876  443 34444443333211   1     000   111111


Q ss_pred             Hhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758          124 EEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT  198 (354)
Q Consensus       124 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~  198 (354)
                      ..+   +.+..+|..+...+...|++++|...+++...  |+...|..+-..+.-.|++++|.+.|++..    .+.|..
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al----rL~P~~  343 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF----NLRPGA  343 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSCSH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCCCc
Confidence            111   33445555555555566777777777766653  555555555566667777777777777665    234555


Q ss_pred             chHH
Q 038758          199 ISLS  202 (354)
Q Consensus       199 ~t~~  202 (354)
                      .||.
T Consensus       344 ~t~~  347 (372)
T 3ly7_A          344 NTLY  347 (372)
T ss_dssp             HHHH
T ss_pred             ChHH
Confidence            5544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.48  E-value=0.007  Score=52.84  Aligned_cols=222  Identities=12%  Similarity=0.065  Sum_probs=132.8

Q ss_pred             CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCC
Q 038758           99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGF  176 (354)
Q Consensus        99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~  176 (354)
                      .+.+|..|..+..+.|++.+|.+-|-+ -.|+..|..+|....+.|.+++-.+.+...++  .++..=+.|+-+|++.++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r  131 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR  131 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC-CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence            455677777777777777776654443 24566667777777777777777777766654  455556677777877777


Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcccCCCCcc
Q 038758          177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQLSTRDVV  254 (354)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~  254 (354)
                      ..+..+++         -.||..-...+-.-|...|.++.|.-+|..+.+...-...  ..|++..|.+.-.+  ..+..
T Consensus       132 L~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK--Ans~k  200 (624)
T 3lvg_A          132 LAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--ANSTR  200 (624)
T ss_dssp             SSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT--CCSSC
T ss_pred             HHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh--cCChh
Confidence            65543332         2366666677777777777777777777666544322111  44555544433332  34667


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHh
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGR  324 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~  324 (354)
                      ||--+-.+|...+.+.-|...--.+.-   .||  ....++..|-..|-+++-          -+.-...|+-|.-.|+|
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK  275 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  275 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence            888888888888877666544333321   122  122344455555555552          22345567777777776


Q ss_pred             cCChhHHHHHhhcC
Q 038758          325 CGAIQKSRKIFVLM  338 (354)
Q Consensus       325 ~g~~~~A~~~~~~m  338 (354)
                      -. +++.++.++..
T Consensus       276 Y~-PeKlmEHlklf  288 (624)
T 3lvg_A          276 FK-PQKMREHLELF  288 (624)
T ss_dssp             SC-TTHHHHHHTTS
T ss_pred             cC-HHHHHHHHHHH
Confidence            63 45555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.67  Score=34.63  Aligned_cols=129  Identities=13%  Similarity=0.051  Sum_probs=87.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758           39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI  118 (354)
Q Consensus        39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  118 (354)
                      .....|+++.|.++.+.+      -+...|..|-......|+++-|.++|.....         +..+.-.|.-.|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345679999999998776      2566799999999999999999999987654         4566677777787766


Q ss_pred             HHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       119 a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ..++-+. -....-++.....+.-.|+++++.++|.+..+.+..     .......|..+.|.++.+++.
T Consensus        79 L~kla~i-A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           79 LSKMQNI-AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHH-HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence            5543322 223334566666777788888888888776552211     111122466677777777663

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.57  E-value=0.82  Score=32.42  Aligned_cols=146  Identities=11%  Similarity=-0.003  Sum_probs=87.8

Q ss_pred             HHHHHHH--HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc--cccchhhHHHHHHHhc
Q 038758           68 CPKVYKA--CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKC  143 (354)
Q Consensus        68 ~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~li~~~~~~  143 (354)
                      ...|+.+  ..-.|.+++..++..+..+..   +..-||=+|.-....-+=+-..++++.+.  -|.          ..+
T Consensus         8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C   74 (172)
T 1wy6_A            8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKC   74 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hhh
Confidence            3444444  345688888999988887642   33344444444444444455555555441  111          123


Q ss_pred             CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758          144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY  223 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  223 (354)
                      |++......+-.+. .++...+..+.....+|+-++-.+++.++.   .+.+|++...-.+..||.+.|+..++.+++.+
T Consensus        75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l---~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~  150 (172)
T 1wy6_A           75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREIL---KNNEVSASILVAIANALRRVGDERDATTLLIE  150 (172)
T ss_dssp             SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHh---ccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            33444444443332 355566677777777888877777777762   35666777777777788888888888888777


Q ss_pred             hhhhccc
Q 038758          224 VLRHHIH  230 (354)
Q Consensus       224 ~~~~~~~  230 (354)
                      .-+.|+.
T Consensus       151 AC~kG~k  157 (172)
T 1wy6_A          151 ACKKGEK  157 (172)
T ss_dssp             HHHTTCH
T ss_pred             HHHhhhH
Confidence            7777654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.42  E-value=0.26  Score=41.75  Aligned_cols=145  Identities=6%  Similarity=-0.044  Sum_probs=89.2

Q ss_pred             hccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhc---cC--ChhhHH--
Q 038758           14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSE---LK--DYRVGK--   85 (354)
Q Consensus        14 ~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~~--~~~~a~--   85 (354)
                      .+.+.++..|...+++...++    . ....++.+|..+|++..+.  .|+- ..|..+..++..   .+  .-....  
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~----~-~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l  260 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLL----H-GDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAAL  260 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHH----H-CSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHH----c-CCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHH
Confidence            344556665555554431111    0 1234568999999999986  4543 334443333321   11  111111  


Q ss_pred             -HHHHHHHHh-ccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--
Q 038758           86 -DVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--  158 (354)
Q Consensus        86 -~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--  158 (354)
                       +-++..... ..+.+..+|..+...+...|++++|...+++.   .++...|..+...+.-.|+.++|.+.|++...  
T Consensus       261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence             122211111 22567778888888888889999999999998   66666666778889999999999999987763  


Q ss_pred             CChhhhH
Q 038758          159 KDLVSWN  165 (354)
Q Consensus       159 ~~~~~~~  165 (354)
                      |...+|.
T Consensus       341 P~~~t~~  347 (372)
T 3ly7_A          341 PGANTLY  347 (372)
T ss_dssp             CSHHHHH
T ss_pred             CCcChHH
Confidence            6665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.31  E-value=0.24  Score=32.73  Aligned_cols=66  Identities=11%  Similarity=0.017  Sum_probs=45.6

Q ss_pred             CcchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHH
Q 038758          197 NTISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL  273 (354)
Q Consensus       197 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  273 (354)
                      |...+..+..++...++   .+++..++++.++..                     +.+......+-..+.+.|++++|+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---------------------p~~~rA~~~lg~~~~~~g~y~~Ai   63 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---------------------PYNEAALSLIANDHFISFRFQEAI   63 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---------------------cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34444555555543333   567777777776664                     345667777788899999999999


Q ss_pred             HHHHHHHHcC
Q 038758          274 DLLRDVIVAN  283 (354)
Q Consensus       274 ~~~~~m~~~g  283 (354)
                      ..|+++.+..
T Consensus        64 ~~w~~~l~~~   73 (93)
T 3bee_A           64 DTWVLLLDSN   73 (93)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.97  E-value=0.12  Score=34.94  Aligned_cols=64  Identities=13%  Similarity=-0.022  Sum_probs=44.6

Q ss_pred             CCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc------CCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF------EGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .+...+..+...+.+.++++.|...|+...+.--      .+...++..|..++.+.|+++.|...+++.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3455566777788888888888888888776521      223445667777777777777777777665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.12  Score=48.40  Aligned_cols=124  Identities=7%  Similarity=0.019  Sum_probs=78.9

Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHh------ccCCCc-----
Q 038758           34 TSMMGMYNVLGY-YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDYMISI------KFEGNA-----  100 (354)
Q Consensus        34 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~~~-----  100 (354)
                      .+|++.+...|+ .+.|..+|+++.+....-+......++..+...++ --+|.+++.+..+.      ..++..     
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            446666666777 57899999999887432222222233333333332 22344555444321      112211     


Q ss_pred             ------eehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          101 ------CVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       101 ------~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                            .....-...+...|+++-|+.+-++.    +.+-.+|..|..+|.+.|+++.|+-.+..++
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                  12222244567789999999998887    5567799999999999999999999998886

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.61  E-value=0.22  Score=32.90  Aligned_cols=45  Identities=4%  Similarity=-0.062  Sum_probs=21.4

Q ss_pred             hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .++|..++++..+.. +-++.....+...+.+.|++++|...|+++
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345555555554443 333444444444455555555555554444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.55  E-value=0.26  Score=33.18  Aligned_cols=66  Identities=6%  Similarity=-0.109  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCC------CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG------VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA  100 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  100 (354)
                      +-.|-..+.+.|+++.|...|+...+.-      -.+....+..+..++.+.|+++.|...++...+.  .|+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~   79 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH   79 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence            4467788889999999999999987642      1234556888889999999999999999999875  4443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.42  E-value=3  Score=34.79  Aligned_cols=131  Identities=11%  Similarity=0.045  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH----HHHHHHHhccCCCceehhhHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----VYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li  107 (354)
                      +|.++..-|.+.+++++|.+++..--.               .+.+.|+...+-+    +++-+.+.++++|......|+
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~  101 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            778888889999999999988655221               1223344433333    334445667777777777777


Q ss_pred             HHHHhcCChh-HHHHHHHhh-----------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCC
Q 038758          108 DLFIKCGRME-ITSGLFEEM-----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG  175 (354)
Q Consensus       108 ~~~~~~g~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~  175 (354)
                      ..+.....-+ .=..+.+++           ..+......+...|.+.+++.+|+..|=.-..++...|..++..+...+
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~  181 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD  181 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            7776665422 122333333           2234455677788888889999888885333333466655555554444


Q ss_pred             Ch
Q 038758          176 FR  177 (354)
Q Consensus       176 ~~  177 (354)
                      ..
T Consensus       182 ~~  183 (336)
T 3lpz_A          182 ES  183 (336)
T ss_dssp             CG
T ss_pred             CC
Confidence            43

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.41  E-value=0.21  Score=36.38  Aligned_cols=80  Identities=10%  Similarity=-0.101  Sum_probs=47.8

Q ss_pred             ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC---ChhhHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChhHH
Q 038758           45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK---DYRVGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a  119 (354)
                      .+..+.+-|.+..+.|. ++..+...+-.++++.+   +++++..+++...+.+ .|  +...+-.|.-+|.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            34455555555555553 56666666666666666   5667777777777654 23  233444555566677777777


Q ss_pred             HHHHHhh
Q 038758          120 SGLFEEM  126 (354)
Q Consensus       120 ~~~~~~~  126 (354)
                      .+.++.+
T Consensus        91 ~~y~~~l   97 (152)
T 1pc2_A           91 LKYVRGL   97 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.34  E-value=2.7  Score=34.76  Aligned_cols=128  Identities=12%  Similarity=0.083  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH----HHHHHHHhccCCCceehhhHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----VYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li  107 (354)
                      .|.++..-|.+.+++++|.+++..--.               .+.+.|+...|-+    +.+-..+.+++++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            778888888888888888888755322               1223344433333    344444556666666666666


Q ss_pred             HHHHhcCChh-HHHHHHHhh-----------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhC
Q 038758          108 DLFIKCGRME-ITSGLFEEM-----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG  174 (354)
Q Consensus       108 ~~~~~~g~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  174 (354)
                      ..+......+ .-.++.+++           ..+......+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            6665543222 123333333           123445666777788888888888877633222455555555444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.92  E-value=4.5  Score=35.46  Aligned_cols=162  Identities=9%  Similarity=0.090  Sum_probs=98.1

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS  241 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a  241 (354)
                      ..|...+...|++.+|.+++.++..-..|..+.   ...+...++.|...+++.+|..+...+...-..           
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-----------  209 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK-----------  209 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-----------
Confidence            456778888899999999999886211222221   234566677788888888888887776432211           


Q ss_pred             HHHhcccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHH---Hhh---ccCcccCc-----
Q 038758          242 CSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLP---ACL---KLAALPQG-----  307 (354)
Q Consensus       242 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~---~~~---~~~~~~~~-----  307 (354)
                           ....|+  ...|..++..+...+++.+|...|.+..+. ...-|...+..++.   .|.   ..++....     
T Consensus       210 -----~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~  284 (445)
T 4b4t_P          210 -----NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKI  284 (445)
T ss_dssp             -----SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSH
T ss_pred             -----cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence                 000222  245666777888899999999888887543 12223222222111   111   11211110     


Q ss_pred             ----cccchhHHHHHHHHHHhc--CChhHHHHHhhcCCCCC
Q 038758          308 ----LGTGSFVWNALIDMYGRC--GAIQKSRKIFVLMPHKN  342 (354)
Q Consensus       308 ----~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~  342 (354)
                          -.++...|..++.+|...  .+++.+.+.|+....++
T Consensus       285 ~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~  325 (445)
T 4b4t_P          285 QNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED  325 (445)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred             hhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence                235678899999999764  46788888888776644

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=92.00  E-value=4  Score=32.67  Aligned_cols=179  Identities=12%  Similarity=0.050  Sum_probs=89.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHH
Q 038758           35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLD  108 (354)
Q Consensus        35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~  108 (354)
                      +.+...++.|+++.+..++    +.|..++..    .++ .+...+..|+.+    +++.+.+.|..++...  -.+.+.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~   77 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence            4555667778776554444    455444432    233 334445556654    4555566676655432  224455


Q ss_pred             HHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh-------------hhHHHHHHH
Q 038758          109 LFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV-------------SWNAMLAGY  171 (354)
Q Consensus       109 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~li~~~  171 (354)
                      ..+..|+.+-+..+++.-    ..+...+ +.+...+..|+.+-+..+++.-..++..             -.+ .+...
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A  155 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDA  155 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHH
Confidence            566677777666666542    1122222 3444556677777777777665443221             122 33334


Q ss_pred             HhCCChhHHHHHHHHHHhhhcCCCCCc---chHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758          172 ALGGFREEVTNLLDEMEMIQTDMQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  230 (354)
                      +..|+.+-+..+++.     .|..++.   ...+.+.. .+..++......+.+.+.+.|..
T Consensus       156 ~~~~~~~~v~~Ll~~-----~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~  211 (285)
T 1wdy_A          156 AEKGHVEVLKILLDE-----MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             HHHTCHHHHHHHHHT-----SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHh-----cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCC
Confidence            456666544444432     2443332   22223322 33344444445666666666653

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.83  E-value=0.82  Score=30.35  Aligned_cols=62  Identities=10%  Similarity=0.176  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD  108 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  108 (354)
                      .=+...-++.+...++.|+.....+.+++|.+.+++..|.++|+-++..- .+...+|..++.
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            33566666777777788888888888899888888988988888877542 333445666543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.82  E-value=2.1  Score=42.66  Aligned_cols=148  Identities=7%  Similarity=-0.028  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc---------------
Q 038758          135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI---------------  199 (354)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~---------------  199 (354)
                      .++..+.+.+..+.+.++..-.+. +...--.+..++...|++++|.+.|++.   ..|+..+..               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka---a~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT---SLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC---CCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH---hhhhcccchhhhhhcccccccccc
Confidence            455666677777777776655543 3333335567788899999999999766   334332211               


Q ss_pred             --------hHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC--cchHHHHHHHHHhcCCH
Q 038758          200 --------SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQV  269 (354)
Q Consensus       200 --------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~  269 (354)
                              =|..++..+.+.+..+.+.++-....+....                  ..++  ...|..+.+++...|++
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~------------------~~~~~~~~l~~~iFk~~L~l~~y  954 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET------------------DDEDLSIAITHETLKTACAAGKF  954 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS------------------CCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC------------------CChhhHHHHHHHHHHHHHhhCCH
Confidence                    1334444444444444444433332222110                  0111  12588889999999999


Q ss_pred             HHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758          270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ  306 (354)
Q Consensus       270 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~  306 (354)
                      ++|...+-.+.+...+  ...+..++..+|..|..+.
T Consensus       955 e~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          955 DAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             GGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence            9999998888766543  3456677777777665433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=89.78  E-value=1.1  Score=32.48  Aligned_cols=88  Identities=9%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc---CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758          178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK---GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV  254 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  254 (354)
                      ..+.+-|.+..  ..|. ++..+--.+-.++++.+   +.+++..+++.+.+...+                   ..+..
T Consensus        15 ~~~~~~y~~e~--~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p-------------------~~~rd   72 (152)
T 1pc2_A           15 LKFEKKFQSEK--AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK-------------------EEQRD   72 (152)
T ss_dssp             HHHHHHHHHHH--HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-------------------HHHHH
T ss_pred             HHHHHHHHHHH--ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-------------------cchHH
Confidence            34455555544  3333 45555555555666655   555777777766665410                   01223


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                      .+-.+--++.+.|++++|.+.++.+.+.  .|+..
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~  105 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNN  105 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence            3334556678889999999999998854  67543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=89.64  E-value=5  Score=32.72  Aligned_cols=123  Identities=11%  Similarity=0.035  Sum_probs=80.8

Q ss_pred             CchhHHHHHhccCCCCCh--hhhHHHHH-HHHhC--CCh------hHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhh
Q 038758          144 RYLKVSHCKFSKIKQKDL--VSWNAMLA-GYALG--GFR------EEVTNLLDEMEMIQTDMQPN---TISLSGVLAACA  209 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~~~~--~~~~~li~-~~~~~--~~~------~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~  209 (354)
                      ++.++..+.+.+....++  ..|..++. .+...  |++      ..|...+++..    .+.|+   ...|..+...|.
T Consensus       135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl----eLDP~~~~GsA~~~LG~lY~  210 (301)
T 3u64_A          135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC----DLWPSYQEGAVWNVLTKFYA  210 (301)
T ss_dssp             SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH----HHCTTHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH----HhCCCcccCHHHHHHHHHHH
Confidence            444455555666654333  34555544 33432  433      34444454444    34565   557788888888


Q ss_pred             hh-----cCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 038758          210 QV-----KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS-GQVVDALDLLRDVIVAN  283 (354)
Q Consensus       210 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g  283 (354)
                      +.     |+.++|++.|++.++.+.                    ..+..++......++.. |+.+++.+.+++.....
T Consensus       211 ~vPp~~gGd~ekA~~~ferAL~LnP--------------------~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          211 AAPESFGGGMEKAHTAFEHLTRYCS--------------------AHDPDHHITYADALCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             HSCTTTTCCHHHHHHHHHHHHHHCC--------------------TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred             hCCCccCCCHHHHHHHHHHHHHhCC--------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence            74     888999999888888753                    23577888888888885 99999999999999876


Q ss_pred             cC--CCHhh
Q 038758          284 VK--PNTVT  290 (354)
Q Consensus       284 ~~--p~~~t  290 (354)
                      ..  |+...
T Consensus       271 p~~~P~~~l  279 (301)
T 3u64_A          271 PESVPHNKL  279 (301)
T ss_dssp             GGGCSSCHH
T ss_pred             CCCCCChhH
Confidence            55  55443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.23  E-value=3.4  Score=27.31  Aligned_cols=50  Identities=14%  Similarity=0.035  Sum_probs=41.6

Q ss_pred             HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      +..+...|++++|..+.+....||...|-++-.  .+.|..+++...+..+.
T Consensus        46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356788899999999999999999999987765  47788888888887885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.63  E-value=2.2  Score=40.04  Aligned_cols=119  Identities=8%  Similarity=-0.036  Sum_probs=74.6

Q ss_pred             HHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHHHHhh-----------ccc------
Q 038758           69 PKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEM-----------DQD------  129 (354)
Q Consensus        69 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~-----------~~~------  129 (354)
                      ..++..+...++ ++.|..+++.+.+.....+......++..+.+.++ --+|.++..+.           ++.      
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            345555555666 58899999998876422222222334443333331 22233333322           111      


Q ss_pred             -----cchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          130 -----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       130 -----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                           ......-.+.+...|+++-|.++-++...  |+ -.+|..|...|.+.|+++.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                 11122224567788999999999988764  54 678999999999999999999999988

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.09  E-value=1.2  Score=38.20  Aligned_cols=70  Identities=6%  Similarity=-0.040  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCcee
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACV  102 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~  102 (354)
                      +...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...+     .|+.|...+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            33444555555666666666665555432 33445566666666666666666666655543     255555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=88.05  E-value=2.2  Score=34.83  Aligned_cols=66  Identities=15%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhccC
Q 038758           32 NWTSMMGMYNV-----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIKFE   97 (354)
Q Consensus        32 ~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~   97 (354)
                      .|..|...|.+     .|+.++|.+.|++..+.+..-+..++......+++. |+.+.+.+.++........
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            67777777887     488999999999888864322467777777777774 8888888888888876544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.53  E-value=11  Score=33.00  Aligned_cols=154  Identities=12%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHH----hccCChhhHHHHHHHHHHh-ccCCC------
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKAC----SELKDYRVGKDVYDYMISI-KFEGN------   99 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~-~~~~~------   99 (354)
                      ....++..|...|+++...+.+.-+... |..+..  ...+++.+    ......+...+ ...+... .+...      
T Consensus        58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~-~~~i~~l~~vte~kiflE~  134 (445)
T 4b4t_P           58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTR-ISVIETIRVVTENKIFVEV  134 (445)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHH-HHHHHCCSSSSSCCCCCCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHHhccchHHHH
Confidence            3456777788888888877776665433 322222  22232222    12222221111 1111111 11111      


Q ss_pred             --ceehhhHHHHHHhcCChhHHHHHHHhhcc----------ccchhhHHHHHHHhcCchhHHHHHhccCCC--------C
Q 038758          100 --ACVKRPLLDLFIKCGRMEITSGLFEEMDQ----------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K  159 (354)
Q Consensus       100 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~  159 (354)
                        ......|...|...|++.+|.+++.++..          -...+...+..|...+++..|..++.+...        |
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence              11224577888889999999999988821          234556677888888999888888776531        1


Q ss_pred             C--hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          160 D--LVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       160 ~--~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      +  ..-|...+..+...+++.+|.+.|.+..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            1  1235566677777888888888877774

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.30  E-value=3.7  Score=29.72  Aligned_cols=93  Identities=11%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCcCCcc-cHHHHHHH------HhccCChhhHHHHHHHHHHhccCC
Q 038758           32 NWTSMMGMYNVLGYY------EEIVNLFYLMIDKGVRPDHF-VCPKVYKA------CSELKDYRVGKDVYDYMISIKFEG   98 (354)
Q Consensus        32 ~y~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~m~~~~~~~   98 (354)
                      +|-..+...-+.|+.      ++..++|++.... ++|+.. .|..-+..      +...+++++|.++|+.+.+.+ +-
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h-Kk   92 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC-KK   92 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-HH
Confidence            566666666777888      8888999988774 555432 12222211      123478888889998887652 22


Q ss_pred             CceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           99 NACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      =..+|-.....=.+.|+++.|.+++.+-
T Consensus        93 FAKiwi~~AqFEiRqgnl~kARkILg~A  120 (161)
T 4h7y_A           93 FAFVHISFAQFELSQGNVKKSKQLLQKA  120 (161)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            2445555555556677777777776653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.04  E-value=1.3  Score=38.09  Aligned_cols=42  Identities=24%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCcCCCHhhH
Q 038758          250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTI  291 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~  291 (354)
                      +-+...|-.+|.++.+.|+..+|++.|++..+     .|+.|+..+-
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            44778999999999999999999999998754     4999998763

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.40  E-value=5.4  Score=26.43  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=39.9

Q ss_pred             HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      +..+...|++++|..+.+....||...|-+|-..  +.|..+++...+..+.
T Consensus        47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la   96 (116)
T 2p58_C           47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA   96 (116)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred             HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence            3567788888888889998888999998777654  6688888888887774

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=86.21  E-value=1.9  Score=30.13  Aligned_cols=82  Identities=6%  Similarity=-0.147  Sum_probs=44.1

Q ss_pred             cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh---hHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChh
Q 038758           43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR---VGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~  117 (354)
                      ...+..+.+-|.+....|. |+..+--.+..++++.++..   ++..+++.+.+.+ .|  .....-.|.-++.+.|+++
T Consensus        14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence            3444455555555544442 55555555555666555433   3666666666543 22  2223334555666667777


Q ss_pred             HHHHHHHhh
Q 038758          118 ITSGLFEEM  126 (354)
Q Consensus       118 ~a~~~~~~~  126 (354)
                      .|.+.++.+
T Consensus        92 ~A~~~~~~l  100 (126)
T 1nzn_A           92 KALKYVRGL  100 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666655

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=86.00  E-value=2.3  Score=29.93  Aligned_cols=59  Identities=10%  Similarity=0.216  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      +...-++.+...++.|+.......+++|.+.+|+..|.++|+-.+..- .+...+|..++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l  129 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence            344444444455566677777777777777777777777776655432 33344455443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.86  E-value=29  Score=34.64  Aligned_cols=123  Identities=6%  Similarity=-0.079  Sum_probs=86.6

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-----------------------
Q 038758          103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-----------------------  159 (354)
Q Consensus       103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------------  159 (354)
                      ...++..+.+.+..+-+.++..-.+.+...--.+..+|...|++++|...|++.-..                       
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~  894 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH  894 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence            345666777888888888777666666555555667888999999999999776420                       


Q ss_pred             ---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCCc--chHHHHHHHhhhhcCccccchhhhHhhh
Q 038758          160 ---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLR  226 (354)
Q Consensus       160 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~  226 (354)
                         -..-|..++..|-+.+.++.+.++-+...+ ..+ -.++.  ..|..+.+++...|++++|...+-.+..
T Consensus       895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~-~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd  966 (1139)
T 4fhn_B          895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST  966 (1139)
T ss_dssp             CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence               011266788888899999999888776642 221 12221  2578889999999999999887765544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.74  E-value=8.3  Score=28.36  Aligned_cols=133  Identities=13%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             HHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CcCCc-------ccHHHHHHHHhccCCh
Q 038758           10 HLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDH-------FVCPKVYKACSELKDY   81 (354)
Q Consensus        10 ~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~ll~~~~~~~~~   81 (354)
                      .--..|+.|....|+        +-.-++.+...|.++.|.-+...+.... ..|+.       .++..+.+++...|++
T Consensus         8 ~~~~~~~~~~~~~~~--------l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey   79 (167)
T 3ffl_A            8 HHHSSGLVPRGSHMN--------VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY   79 (167)
T ss_dssp             -------------CC--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccCCCCCccHHH--------HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH
Confidence            334567777766543        3345777888999999998888865542 23443       2456777888999999


Q ss_pred             hhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758           82 RVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus        82 ~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (354)
                      .+|...|+...+..  +..+..+...+-   .....+..    ++ ...+...--.+..+|.+.++.++|+.+++.++.
T Consensus        80 rrA~~~y~qALq~~k~l~k~~s~~~~~~---~~ss~p~s----~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           80 RNAVSKYTMALQQKKALSKTSKVRPSTG---NSASTPQS----QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHHHHHHHHHHHHHCC---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccccc---ccCCCccc----cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            99999999976542  111111111110   00000000    00 011223333456677777888888888777753

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=84.33  E-value=4.5  Score=26.92  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      =++.+-++.+.  ...+.|+.....+.|++|.+.+++..|.++++-++...
T Consensus        27 ~e~rrglN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           27 WELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             HHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            35556666666  67777777777778888877777777777777666543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.89  E-value=19  Score=29.73  Aligned_cols=26  Identities=8%  Similarity=0.193  Sum_probs=20.7

Q ss_pred             chhHHHHHHHHHHhcCChhHHHHHhh
Q 038758          311 GSFVWNALIDMYGRCGAIQKSRKIFV  336 (354)
Q Consensus       311 ~~~~~~~li~~~~~~g~~~~A~~~~~  336 (354)
                      ++.....+...|.+.|++.+|+..|-
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            55667778888888888888888775

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.81  E-value=5.9  Score=29.13  Aligned_cols=121  Identities=7%  Similarity=-0.023  Sum_probs=65.7

Q ss_pred             CCCcCCcc--cHHHHHHHHhccCChhhHHHHHHHHHHhc-cCCCc-------eehhhHHHHHHhcCChhHHHHHHHhh--
Q 038758           59 KGVRPDHF--VCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNA-------CVKRPLLDLFIKCGRMEITSGLFEEM--  126 (354)
Q Consensus        59 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~--  126 (354)
                      .|+.|...  .+-.-++.+...+.++.|+-+.+.+.... ..|+.       .++..+.+++...|++..|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            35555443  34455777888889999988888876542 34443       25566778888899999999888874  


Q ss_pred             -----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                           .....+.+.+    ........   -++.  ..+...---+-.+|.+.+++++|+.+++.+.
T Consensus        92 ~~k~l~k~~s~~~~~----~~~ss~p~---s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A           92 QKKALSKTSKVRPST----GNSASTPQ---SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHCC---------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHhcCCCccccc----cccCCCcc---cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence                 0000001000    00000000   0000  1122333347788999999999999988664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=81.38  E-value=13  Score=26.91  Aligned_cols=113  Identities=10%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             CChhhhHHHHHHHHhCCCh------hHHHHHHHHHHhhhcCCCCCcch----HHHHH-H--HhhhhcCccccchhhhHhh
Q 038758          159 KDLVSWNAMLAGYALGGFR------EEVTNLLDEMEMIQTDMQPNTIS----LSGVL-A--ACAQVKGVKLGKAIHGYVL  225 (354)
Q Consensus       159 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~p~~~t----~~~ll-~--~~~~~~~~~~a~~~~~~~~  225 (354)
                      .|..+|-..+...-+.|++      ++..++|+...   ..++|+...    |.-+. .  .+...+|+++|+++|+.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi---a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI---EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH---HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH---HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4566777777777777988      88888888774   466665321    21111 1  1234478999999998887


Q ss_pred             hhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758          226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP  296 (354)
Q Consensus       226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  296 (354)
                      +.+                     +.=...|-..-.-=.++|+..+|.+++.+....+.+|.. .+...|+
T Consensus        88 ~~h---------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~  136 (161)
T 4h7y_A           88 ANC---------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR  136 (161)
T ss_dssp             HHC---------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred             HHh---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence            753                     222444544444556799999999999999876655543 3333333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=80.85  E-value=15  Score=27.35  Aligned_cols=154  Identities=7%  Similarity=-0.065  Sum_probs=83.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHHhcCC
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFIKCGR  115 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~  115 (354)
                      ...+..|+.+.+..++..-...--..|...++.|.. .+..|+.+    +++.+.+.|..++...  -.+.+...+..|+
T Consensus        10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   84 (201)
T 3hra_A           10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR   84 (201)
T ss_dssp             HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            344567888777777653221101223333444444 44556654    5555566676665443  2344556667788


Q ss_pred             hhHHHHHHHhhcc-----ccchhhHHHHHHHhcCchhHHHHHhccC-CC---CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758          116 MEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKI-KQ---KDLVSWNAMLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       116 ~~~a~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  186 (354)
                      .+-+..+++.-..     +.... +.+...++.|+.+-+..+++.- ..   +|..-.+.+..+.........-.++.+.
T Consensus        85 ~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           85 TEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            8888777755421     22222 2345556678888777777665 22   3444445555554433323334566666


Q ss_pred             HHhhhcCCCCCcc
Q 038758          187 MEMIQTDMQPNTI  199 (354)
Q Consensus       187 m~~~~~~~~p~~~  199 (354)
                      +.  +.|..|+..
T Consensus       164 Ll--~~ga~~~~~  174 (201)
T 3hra_A          164 LM--ENGADQSIK  174 (201)
T ss_dssp             HH--HTTCCTTCC
T ss_pred             HH--HCCCCCCcc
Confidence            66  667666643

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=80.72  E-value=3.9  Score=34.52  Aligned_cols=27  Identities=15%  Similarity=0.139  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMID   58 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~   58 (354)
                      ....+|.-|...++.++|...++++..
T Consensus        56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~   82 (358)
T 3eiq_C           56 TLTPIIQEYFEHGDTNEVAEMLRDLNL   82 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence            567889999999999999999998753

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=80.65  E-value=7  Score=32.20  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=37.2

Q ss_pred             hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC--ccccchhhhHhhhhccc
Q 038758          164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG--VKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~  230 (354)
                      .+.++.-|...|+.++|.+.++++.  .....+ ......+..++-+.++  .+....++..+.+.++-
T Consensus       169 i~~lL~EY~~~~D~~EA~~ci~EL~--~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l  234 (307)
T 2zu6_B          169 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI  234 (307)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHC--CGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcC--CCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence            4567777777788888888888775  332322 2334455555554322  34556666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.79
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.69
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.03
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.75
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.74
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.59
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.12
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.04
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.96
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.94
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.84
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.27
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.25
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.04
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.0
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.92
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.81
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.79
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.62
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.5
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.59
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	91.32
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	88.04
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.07
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	82.41
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.2

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-17  Score=143.68  Aligned_cols=308  Identities=9%  Similarity=0.031  Sum_probs=201.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -..+.+.|++++|.+.++++.+.. +-+...+..+...+.+.|++++|.+.++...+.. +-+..++..+..+|.+.|++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            355678899999999999998764 2345667888888999999999999999998875 55677889999999999999


Q ss_pred             hHHHHHHHhh----c----------------------------------cccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758          117 EITSGLFEEM----D----------------------------------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ  158 (354)
Q Consensus       117 ~~a~~~~~~~----~----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (354)
                      ++|...+...    +                                  ................+....+...+.....
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence            9999998887    0                                  0000111111112222222222222222111


Q ss_pred             --C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-
Q 038758          159 --K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-  233 (354)
Q Consensus       159 --~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  233 (354)
                        | +...+..+...+...|++++|...++...  .  ..|+ ...+..+...+...|++++|...+....+....... 
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  239 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--T--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV  239 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHH--H--hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence              1 23344445555555566666666655554  2  1222 334455555555556666665555555443332221 


Q ss_pred             ---------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758          234 ---------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL  301 (354)
Q Consensus       234 ---------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  301 (354)
                               ..|++++|...|++..   +.+..+|..+...+...|++++|++.++...... +.+...+..+...+...
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence                     4555566665555432   3356778888889999999999999998887543 45667777888888888


Q ss_pred             CcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC--CC-cccHHHhhh
Q 038758          302 AALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KN-LVSWNVMIS  351 (354)
Q Consensus       302 ~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~  351 (354)
                      |+.+++         ..| +..++..+...|.+.|++++|.+.|++..+  |+ ...|..+-.
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~  381 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN  381 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            888876         344 467788899999999999999999998876  64 345555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.3e-15  Score=125.39  Aligned_cols=308  Identities=9%  Similarity=0.001  Sum_probs=184.4

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY   81 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~   81 (354)
                      ++|..+++.+.+..  |+...         .+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++
T Consensus        16 ~~A~~~~~~~l~~~--p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_          16 EAAERHCMQLWRQE--PDNTG---------VLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhC--CCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            56777888777653  54321         56777888999999999999999998764 23456788888999999999


Q ss_pred             hhHHHHHHHHHHhccCCCceehhhHHH----------------------------------HHHhcCChhHHHHHHHhh-
Q 038758           82 RVGKDVYDYMISIKFEGNACVKRPLLD----------------------------------LFIKCGRMEITSGLFEEM-  126 (354)
Q Consensus        82 ~~a~~~~~~m~~~~~~~~~~~~~~li~----------------------------------~~~~~g~~~~a~~~~~~~-  126 (354)
                      ++|.+.+....+.. +.+.........                                  .....+....+...+.+. 
T Consensus        84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            99999998887653 211111111111                                  111122222222222222 


Q ss_pred             ---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcch
Q 038758          127 ---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS  200 (354)
Q Consensus       127 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t  200 (354)
                         +.....+..+...+...|++++|...+++..+  | +...|..+...+...|++++|...++...  ..+ +.+...
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~  239 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL--SLS-PNHAVV  239 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH--HHC-TTCHHH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH--HHh-hhHHHH
Confidence               22233444555555555666665555554332  2 23445555555555566666666555554  211 122334


Q ss_pred             HHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcC
Q 038758          201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSG  267 (354)
Q Consensus       201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g  267 (354)
                      +..+...+.+.|++++|...++...+.......          ..|+.++|...++...   +.+...+..+...+.+.|
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            444555555555666665555555544322211          4455555555555433   445667777788888888


Q ss_pred             CHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCC
Q 038758          268 QVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGA  327 (354)
Q Consensus       268 ~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~  327 (354)
                      ++++|+..|++..+.  .|+ ...+..+-..+.+.|++++|         +.| +..+|..+...|.+.|+
T Consensus       320 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            888888888887753  454 45667777788888888776         455 35678888888877765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.9e-13  Score=112.46  Aligned_cols=257  Identities=9%  Similarity=0.010  Sum_probs=188.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -..+.+.|++++|...|++..+.. +-+...|..+...+...|+++.|...++...+.. +-+...+..+..+|...|++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence            345778999999999999999864 3356678889999999999999999999998765 45677888899999999999


Q ss_pred             hHHHHHHHhh---ccccc----------------hhhHHHHHHHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHH
Q 038758          117 EITSGLFEEM---DQDFL----------------VNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYA  172 (354)
Q Consensus       117 ~~a~~~~~~~---~~~~~----------------~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~  172 (354)
                      ++|.+.+++.   .|+..                .....+..+...+.+.+|...|++..+     .+...+..+...+.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~  183 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN  183 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            9999999987   11110                111223344556777888888776542     34566778888999


Q ss_pred             hCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC
Q 038758          173 LGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR  251 (354)
Q Consensus       173 ~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (354)
                      ..|++++|...|++..  ..  .| +...+..+..++.+.|++++|...++...+..                     +.
T Consensus       184 ~~~~~~~A~~~~~~al--~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------p~  238 (323)
T d1fcha_         184 LSGEYDKAVDCFTAAL--SV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---------------------PG  238 (323)
T ss_dssp             HTTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT
T ss_pred             HHHHHhhhhccccccc--cc--ccccccchhhhhhcccccccchhHHHHHHHHHHHh---------------------hc
Confidence            9999999999999986  32  33 35678888888999999999999998887764                     33


Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHH
Q 038758          252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS  331 (354)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  331 (354)
                      +..+|..+...|.+.|++++|++.|++..+.  .|+.....      .      ........+|..+-.++...|+.+.+
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~------~------~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPR------G------EGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------------------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhh------h------hhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            5677889999999999999999999998753  33321100      0      00111223456666677667776665


Q ss_pred             HHH
Q 038758          332 RKI  334 (354)
Q Consensus       332 ~~~  334 (354)
                      ...
T Consensus       305 ~~~  307 (323)
T d1fcha_         305 GAA  307 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.6e-12  Score=104.09  Aligned_cols=225  Identities=9%  Similarity=-0.027  Sum_probs=169.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758           68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC  143 (354)
Q Consensus        68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~  143 (354)
                      .-.....+.+.|++++|.+.|+...+.. +-+...|..+..++...|++++|...|++.    +.+...|..+...|...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            3345556789999999999999999875 556778999999999999999999999987    44567888889999999


Q ss_pred             CchhHHHHHhccCCC--CCh----------------hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758          144 RYLKVSHCKFSKIKQ--KDL----------------VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL  205 (354)
Q Consensus       144 ~~~~~a~~~~~~~~~--~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll  205 (354)
                      |++++|.+.+++...  |+.                ......+..+...+.+.+|.+.|..... ...-.++...+..+.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR-LDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH-HSTTSCCHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH-HhhcccccccchhhH
Confidence            999999999877642  111                0111122334445667788888887762 222233455677777


Q ss_pred             HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 038758          206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK  285 (354)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  285 (354)
                      ..+...|++++|...++...+..                     +.+...|..+...|.+.|++++|++.|++..+.  .
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~  236 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVR---------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--Q  236 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHhhhhcccccccccc---------------------cccccchhhhhhcccccccchhHHHHHHHHHHH--h
Confidence            78888999999999888877654                     335678888999999999999999999998864  4


Q ss_pred             CCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758          286 PNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       286 p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      |+..                       .+|..+..+|.+.|++++|.+.|++..+
T Consensus       237 p~~~-----------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         237 PGYI-----------------------RSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             TTCH-----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hccH-----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5432                       2367788888888888888888877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1e-08  Score=85.69  Aligned_cols=262  Identities=8%  Similarity=-0.020  Sum_probs=175.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCc------ccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDH------FVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRP  105 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~  105 (354)
                      -..+...|++++|.+++++..+..  |+.      ..+..+...+...|++++|.+.++...+.... ++    ...+..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            345678999999999999988753  332      34666778888999999999999998765321 11    335566


Q ss_pred             HHHHHHhcCChhHHHHHHHhhc------------cccchhhHHHHHHHhcCchhHHHHHhccCCC--------CChhhhH
Q 038758          106 LLDLFIKCGRMEITSGLFEEMD------------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------KDLVSWN  165 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~  165 (354)
                      +...+...|++..+...+.+..            .....+..+...+...|+++.+...++....        .....+.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            7778889999999999888760            0112445566788888999999888866542        1233455


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758          166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS  241 (354)
Q Consensus       166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a  241 (354)
                      .....+...+++..+...+.+...........    ...+......+...|+.+.+...+....+......         
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------  247 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN---------  247 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC---------
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc---------
Confidence            56667778888888888887664211111111    12344445556677777777777666554332100         


Q ss_pred             HHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCCHhhHHHHHHHhhccCcccCccccchhHHHH
Q 038758          242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA----NVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA  317 (354)
Q Consensus       242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~  317 (354)
                              ......+..+...+...|++++|...+++....    +..|+.                       ..++..
T Consensus       248 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----------------------~~~~~~  296 (366)
T d1hz4a_         248 --------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL-----------------------NRNLLL  296 (366)
T ss_dssp             --------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----------------------HHHHHH
T ss_pred             --------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH-----------------------HHHHHH
Confidence                    112234556778899999999999999988643    333322                       234667


Q ss_pred             HHHHHHhcCChhHHHHHhhcCCC
Q 038758          318 LIDMYGRCGAIQKSRKIFVLMPH  340 (354)
Q Consensus       318 li~~~~~~g~~~~A~~~~~~m~~  340 (354)
                      +...|.+.|++++|.+.+++..+
T Consensus       297 la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            77888888888888888876543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-08  Score=83.21  Aligned_cols=189  Identities=10%  Similarity=-0.018  Sum_probs=147.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      .|+.+-..+.+.+.+++|++++++..+.  .|+.. .|+.....+...| ++++|.+.++...+.. +-+..+|..+..+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            6777877888999999999999999986  45554 5777777777766 5899999999998875 6678899999999


Q ss_pred             HHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCC------
Q 038758          110 FIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGF------  176 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~------  176 (354)
                      +.+.|++++|...+++.    +.+...|..+...+.+.|++++|.+.|++..+  | +...|+.+...+.+.+.      
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence            99999999999999998    55688999999999999999999999998875  3 55678777776666665      


Q ss_pred             hhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          177 REEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      +++|++.+....  .  +.|+ ...|..+...+. ....+++...++...+..
T Consensus       202 ~~~ai~~~~~al--~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~  249 (315)
T d2h6fa1         202 LEREVQYTLEMI--K--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ  249 (315)
T ss_dssp             HHHHHHHHHHHH--H--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHT
T ss_pred             hHHhHHHHHHHH--H--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhC
Confidence            467888887765  2  3343 445555544444 344577777777666554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=6.8e-08  Score=79.44  Aligned_cols=187  Identities=9%  Similarity=0.020  Sum_probs=92.3

Q ss_pred             hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCC
Q 038758           81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD  160 (354)
Q Consensus        81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  160 (354)
                      .+++..+|+...+...+.+...|...+..+...|+++.|..+|+++-                          +..+...
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l--------------------------~~~~~~~  133 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--------------------------AIEDIDP  133 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------TSSSSCT
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--------------------------HHhcCCh
Confidence            45566666666654333344455666666666666666666666540                          0000011


Q ss_pred             hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH-hhhhcCccccchhhhHhhhhccccccccchhH
Q 038758          161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA-CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI  239 (354)
Q Consensus       161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  239 (354)
                      ...|...+....+.|+.+.|.++|+.+.  ..+ +.+...|...... +...|+.+.|..+++...+..           
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al--~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-----------  199 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAR--EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----------  199 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHH--TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHH--HhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-----------
Confidence            2235555555555555666666665554  211 1111122211111 122344555555555555442           


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCHhhHHHHHHHhhccCcccCccccchhHHHHH
Q 038758          240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL  318 (354)
Q Consensus       240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~l  318 (354)
                                +.+...|...+..+.+.|+.+.|..+|++..+.. ..|+..                      ..+|...
T Consensus       200 ----------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~----------------------~~iw~~~  247 (308)
T d2onda1         200 ----------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------------GEIWARF  247 (308)
T ss_dssp             ----------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC----------------------HHHHHHH
T ss_pred             ----------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH----------------------HHHHHHH
Confidence                      2344556666666666666666666666665432 222211                      1235555


Q ss_pred             HHHHHhcCChhHHHHHhhcCC
Q 038758          319 IDMYGRCGAIQKSRKIFVLMP  339 (354)
Q Consensus       319 i~~~~~~g~~~~A~~~~~~m~  339 (354)
                      +..-.+.|+.+.+.++++++.
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            555555666666666655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.3e-08  Score=81.49  Aligned_cols=216  Identities=8%  Similarity=-0.057  Sum_probs=129.2

Q ss_pred             ChhHHHHHHHHHHhCCC-cC--CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758           45 YYEEIVNLFYLMIDKGV-RP--DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG  121 (354)
Q Consensus        45 ~~~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  121 (354)
                      +.+.++.-+++...... .+  ....|..+...+.+.|++++|.+.|+...+.. +-++.+|..+..+|.+.|++++|.+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            44555566666654421 11  22356666677888888899988888888764 5567788888888888899988888


Q ss_pred             HHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC
Q 038758          122 LFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM  194 (354)
Q Consensus       122 ~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  194 (354)
                      .|++.    +.+..++..+..+|...|++++|...|+...+  | +......+..++.+.+..+.+..+.....  .  .
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~  168 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE--K--S  168 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH--H--S
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh--c--c
Confidence            88887    34456777788888888888888888876653  3 33333333344455555555555555443  2  2


Q ss_pred             CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC--CC-CcchHHHHHHHHHhcCCHHH
Q 038758          195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS--TR-DVVVWNSIISAFVRSGQVVD  271 (354)
Q Consensus       195 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~  271 (354)
                      .++...+..+ ..+.  +..... ..+..                 +...+....  .| ...+|..+-..|...|++++
T Consensus       169 ~~~~~~~~~~-~~~~--~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  227 (259)
T d1xnfa_         169 DKEQWGWNIV-EFYL--GNISEQ-TLMER-----------------LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS  227 (259)
T ss_dssp             CCCSTHHHHH-HHHT--TSSCHH-HHHHH-----------------HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chhhhhhhHH-HHHH--HHHHHH-HHHHH-----------------HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHH
Confidence            2222222222 1111  111110 01111                 111111000  11 23457778889999999999


Q ss_pred             HHHHHHHHHHcCcCCCH
Q 038758          272 ALDLLRDVIVANVKPNT  288 (354)
Q Consensus       272 a~~~~~~m~~~g~~p~~  288 (354)
                      |.+.|++..+.  .|+.
T Consensus       228 A~~~~~~al~~--~p~~  242 (259)
T d1xnfa_         228 ATALFKLAVAN--NVHN  242 (259)
T ss_dssp             HHHHHHHHHTT--CCTT
T ss_pred             HHHHHHHHHHc--CCCC
Confidence            99999998854  5654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.8e-07  Score=75.87  Aligned_cols=192  Identities=9%  Similarity=0.005  Sum_probs=131.4

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC-ChhHHHHHHHhh----ccccchhhHHHHHHH
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEITSGLFEEM----DQDFLVNNSLIDFYA  141 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~  141 (354)
                      .|+.+-..+.+.+..++|.++++.+.+.+ +-+...|+....++...| ++++|...++..    +.+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            34555556778889999999999999875 666778888888888876 589999998887    556778888888888


Q ss_pred             hcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCcccc
Q 038758          142 KCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLG  217 (354)
Q Consensus       142 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a  217 (354)
                      +.|++++|+..++++.+   .+...|..+...+.+.|++++|++.++.+.  +  +.| +...|+.+...+.+.+.....
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al--~--~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL--K--EDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH--H--HCCccHHHHHHHHHHHHHccccchh
Confidence            88999999888887764   356678888888888888889988888886  3  234 344566555444444433221


Q ss_pred             chhhhHhhhhccccccccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758          218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA  282 (354)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  282 (354)
                                        +.+++|+..+.+..   +.+...|+.+...+.. ...+++.+.++...+.
T Consensus       200 ------------------~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         200 ------------------AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred             ------------------hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence                              22223333332221   3456667766555443 4457777777777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.9e-07  Score=75.53  Aligned_cols=155  Identities=10%  Similarity=0.033  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH-HH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL-FI  111 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~  111 (354)
                      |........+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+...+.+ +.+...|...... +.
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            444455556667777777777776654322222346666666666677777777776666543 2333333333322 22


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----C--ChhhhHHHHHHHHhCCChhHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----K--DLVSWNAMLAGYALGGFREEV  180 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a  180 (354)
                      ..|+.+.|..+|+..    +.+...|...++.+.+.|+++.|..+|++...     |  ....|...+.--.+.|+.+.+
T Consensus       181 ~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~  260 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             hccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            346666666666665    33455566666666666666666666665421     1  122455555555556666666


Q ss_pred             HHHHHHHH
Q 038758          181 TNLLDEME  188 (354)
Q Consensus       181 ~~~~~~m~  188 (354)
                      .++++.+.
T Consensus       261 ~~~~~r~~  268 (308)
T d2onda1         261 LKVEKRRF  268 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.3e-08  Score=83.35  Aligned_cols=259  Identities=5%  Similarity=-0.118  Sum_probs=163.9

Q ss_pred             hhhHHHHHHHHHhccccchhh-hhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-
Q 038758            2 ELGIQVHAHLIVCGVELCAFL-GSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-   79 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-   79 (354)
                      ++|..+++.+++.  .|+-.+ |+..=..+......-..+...|++++|+..++...+.. +-+...|..+..++...+ 
T Consensus        46 ~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          46 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence            3566666666543  354332 21111111112222333455677889999999988754 334445666666666555 


Q ss_pred             -ChhhHHHHHHHHHHhccCCCceehh-hHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHh
Q 038758           80 -DYRVGKDVYDYMISIKFEGNACVKR-PLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus        80 -~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                       +.+++...++...+.. +++...+. .....+...+..+.|...+++.    +.+...|+.+...+.+.|++++|...+
T Consensus       123 ~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             5788999999988764 44555554 4456777889999999999888    456677888888999999999887777


Q ss_pred             ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758          154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST  233 (354)
Q Consensus       154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  233 (354)
                      +....-..... .....+...+..+++...+....  .. -+++...+..+...+...++...+...+....+..+    
T Consensus       202 ~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l--~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----  273 (334)
T d1dcea1         202 RLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWL--LG-RAEPLFRCELSVEKSTVLQSELESCKELQELEPENK----  273 (334)
T ss_dssp             SSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHH--HS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH----
T ss_pred             HHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHH--Hh-CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc----
Confidence            76554222222 23334455677777777777664  22 233344444455555555665555555554444331    


Q ss_pred             ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       234 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                                       .+..+|..+...+...|+.++|.+.|++..+.  .|+...|
T Consensus       274 -----------------~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y  312 (334)
T d1dcea1         274 -----------------WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY  312 (334)
T ss_dssp             -----------------HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             -----------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHH
Confidence                             24567777888999999999999999999864  6765544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=7.6e-08  Score=80.07  Aligned_cols=252  Identities=6%  Similarity=-0.077  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHH---HHHHHh-------ccCChhhHHHHHHHHHHhccCCCce
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPK---VYKACS-------ELKDYRVGKDVYDYMISIKFEGNAC  101 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~---ll~~~~-------~~~~~~~a~~~~~~m~~~~~~~~~~  101 (354)
                      ++.++....+.+..++|++++++..+.  .|+..+ |+.   ++..+.       ..|++++|..+++...+.. +.+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence            344444444445568999999998874  566554 332   222222       3445778888888887764 55666


Q ss_pred             ehhhHHHHHHhcCC--hhHHHHHHHhh----ccccchhhH-HHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHH
Q 038758          102 VKRPLLDLFIKCGR--MEITSGLFEEM----DQDFLVNNS-LIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGY  171 (354)
Q Consensus       102 ~~~~li~~~~~~g~--~~~a~~~~~~~----~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~  171 (354)
                      .|..+..++...++  .++|...+++.    +.....+.. ....+...+..++|...++...+   .+...|+.+...+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~  188 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            77777777766654  67888777776    223344433 33556667777888887777765   2445666677777


Q ss_pred             HhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC
Q 038758          172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR  251 (354)
Q Consensus       172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (354)
                      .+.|++++|...+....  .  +.|+   ...+...+...+..+.+...+.......                     ++
T Consensus       189 ~~~~~~~~A~~~~~~~~--~--~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~---------------------~~  240 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPE--N--VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR---------------------AE  240 (334)
T ss_dssp             HHHSCCCCSSSCCSSCH--H--HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC---------------------CC
T ss_pred             HHhcCHHHHHHHHHHhH--H--hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC---------------------cc
Confidence            77777776655444332  1  1111   1112223344455555555544443332                     34


Q ss_pred             CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHH
Q 038758          252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS  331 (354)
Q Consensus       252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  331 (354)
                      +...+..+...+...|+..+|...+.+..+.  .|+.                       ..++..+...|.+.|++++|
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~-----------------------~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPE--NKWC-----------------------LLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHH-----------------------HHHHHHHHHHHCTGGGHHHH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchH-----------------------HHHHHHHHHHHHHCCCHHHH
Confidence            5566667777778888888998888877643  2332                       22467778888888888888


Q ss_pred             HHHhhcCCC
Q 038758          332 RKIFVLMPH  340 (354)
Q Consensus       332 ~~~~~~m~~  340 (354)
                      .+.++...+
T Consensus       296 ~~~~~~ai~  304 (334)
T d1dcea1         296 LQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888776

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=9.4e-07  Score=71.71  Aligned_cols=201  Identities=9%  Similarity=-0.072  Sum_probs=110.5

Q ss_pred             HHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------C--ChhhhHHHH
Q 038758          108 DLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------K--DLVSWNAML  168 (354)
Q Consensus       108 ~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li  168 (354)
                      ..|...|++++|.+.|.+.          .....+|..+..+|.+.|++++|.+.+++...       +  ...++..+.
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence            3445555555555555544          11123445555555555655555555544321       1  133455566


Q ss_pred             HHHH-hCCChhHHHHHHHHHHhh--hcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHH
Q 038758          169 AGYA-LGGFREEVTNLLDEMEMI--QTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSV  244 (354)
Q Consensus       169 ~~~~-~~~~~~~a~~~~~~m~~~--~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  244 (354)
                      ..|. ..|++++|.+.|++..+.  ..+-.+. ..++..+...+.+.|++++|...++.+.+.......           
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~-----------  193 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-----------  193 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-----------
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh-----------
Confidence            6664 468999999998876411  1122221 345677778888888888888888877665431000           


Q ss_pred             hcccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHH
Q 038758          245 FNQLSTRDV-VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG  323 (354)
Q Consensus       245 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~  323 (354)
                          ..... ..+...+..+...|+++.|...+++..+.  .|+...                  .........++.++-
T Consensus       194 ----~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~------------------sre~~~l~~l~~a~~  249 (290)
T d1qqea_         194 ----SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD------------------SRESNFLKSLIDAVN  249 (290)
T ss_dssp             ----TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------------------------HHHHHHHHHHHH
T ss_pred             ----hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccc------------------hHHHHHHHHHHHHHH
Confidence                00000 12334455667889999999999998754  232110                  001112344555554


Q ss_pred             h--cCChhHHHHHhhcCCCCCc
Q 038758          324 R--CGAIQKSRKIFVLMPHKNL  343 (354)
Q Consensus       324 ~--~g~~~~A~~~~~~m~~~~~  343 (354)
                      .  .+.+++|.+-|+.+.+-|.
T Consensus       250 ~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         250 EGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TTCTTTHHHHHHHHTTSSCCCH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCH
Confidence            4  3457778888877776554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.2e-06  Score=72.60  Aligned_cols=256  Identities=9%  Similarity=0.014  Sum_probs=169.7

Q ss_pred             hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC-----CcccHHHHHHHHh
Q 038758            2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-----DHFVCPKVYKACS   76 (354)
Q Consensus         2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~   76 (354)
                      ++|.++++...+.  .|+........    .++.+-..+...|++++|...+++..+.....     ....+..+...+.
T Consensus        29 ~~A~~~~~~aL~~--~~~~~~~~~~~----a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  102 (366)
T d1hz4a_          29 DEAERLAKLALEE--LPPGWFYSRIV----ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  102 (366)
T ss_dssp             HHHHHHHHHHHHT--CCTTCHHHHHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CcCCCcHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            4667777766553  24322211111    56778888999999999999999986642111     1234555667788


Q ss_pred             ccCChhhHHHHHHHHHHhc----cCCC---ceehhhHHHHHHhcCChhHHHHHHHhh---------ccccchhhHHHHHH
Q 038758           77 ELKDYRVGKDVYDYMISIK----FEGN---ACVKRPLLDLFIKCGRMEITSGLFEEM---------DQDFLVNNSLIDFY  140 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~---------~~~~~~~~~li~~~  140 (354)
                      ..|++..+...+.......    ....   ...+..+...+...|+++.+...+...         ......+..+...+
T Consensus       103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (366)
T d1hz4a_         103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS  182 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            8999999999988876532    1111   124556677889999999999999887         11223334455666


Q ss_pred             HhcCchhHHHHHhccC-------CCC---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHH
Q 038758          141 AKCRYLKVSHCKFSKI-------KQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAA  207 (354)
Q Consensus       141 ~~~~~~~~a~~~~~~~-------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~  207 (354)
                      ...++...+...+.+.       ...   ....+..+...+...|++++|...++...  ......+   ...+..+..+
T Consensus       183 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~la~~  260 (366)
T d1hz4a_         183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARA  260 (366)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC--CCCCTTCGGGHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhccccchHHHHHHHHHHHH
Confidence            7777777766665433       221   22345666777889999999999998875  3222222   2345556778


Q ss_pred             hhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758          208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIV  281 (354)
Q Consensus       208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  281 (354)
                      +...|++++|...++...........                .| ...++..+-..|.+.|++++|.+.+++..+
T Consensus       261 ~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         261 QILLGEFEPAEIVLEELNENARSLRL----------------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhccc----------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88899999999988877643221000                12 235677788899999999999999998764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.1e-07  Score=75.93  Aligned_cols=195  Identities=10%  Similarity=-0.001  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      +|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. +-+..++..+..+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            56677788999999999999999999864 3356678899999999999999999999999875 456778889999999


Q ss_pred             hcCChhHHHHHHHhh---c-cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHH-HHHHHHhCCChhHHHHHHHH
Q 038758          112 KCGRMEITSGLFEEM---D-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA-MLAGYALGGFREEVTNLLDE  186 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~  186 (354)
                      ..|++++|...|++.   . .+......+..++.+.+..+.+..+.......+...++. ++..+...........-...
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA  196 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987   2 233333334444555555555544444333322222222 22222222111111111111


Q ss_pred             HHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758          187 MEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHH  228 (354)
Q Consensus       187 m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  228 (354)
                      .........|+ ..+|..+-..+...|+.++|...++......
T Consensus       197 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            11000011222 2355566777888888888888888777653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=5.1e-06  Score=67.20  Aligned_cols=171  Identities=10%  Similarity=-0.040  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCC----c-CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC-----Cce
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV----R-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG-----NAC  101 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~----~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~  101 (354)
                      .|...-..|...|++++|.+.|.+..+...    + .-..+|..+...|.+.|++++|.+.++...+.-...     ...
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            455566666666666666666666544211    1 112345555556666666666666665554331111     122


Q ss_pred             ehhhHHHHHHh-cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChh
Q 038758          102 VKRPLLDLFIK-CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFRE  178 (354)
Q Consensus       102 ~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~  178 (354)
                      ++..+...|.. .|++++|.+.+++.                       .+++.....+  -..++..+...+.+.|+++
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A-----------------------~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~  175 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELA-----------------------GEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHH-----------------------HHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence            23333333322 35555555544432                       1111111111  1234666677777777777


Q ss_pred             HHHHHHHHHHhhhcCCCCCcc------hHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          179 EVTNLLDEMEMIQTDMQPNTI------SLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       179 ~a~~~~~~m~~~~~~~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      +|.+.|++..  .........      .+......+...+++..|...++...+.
T Consensus       176 ~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         176 EASDIYSKLI--KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHH--HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHH--HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            7777777765  221111100      1122233344556666666666555544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.3e-05  Score=60.32  Aligned_cols=152  Identities=10%  Similarity=0.049  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .||. -..+...|+++.|++.|.+.    .+|+...|..+...+...|++++|.+.|+..++.+ +.+...|..+..+|.
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence            4554 44567889999999999864    35677788889999999999999999999999876 667778999999999


Q ss_pred             hcCChhHHHHHHHhh----ccccc-hhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758          112 KCGRMEITSGLFEEM----DQDFL-VNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLD  185 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~  185 (354)
                      +.|++++|.+.|++.    +.+.. .|..       .|          ..... ...++..+..++.+.|++++|.+.++
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~-------~~----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~  144 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKI-------LG----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  144 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGG-------GT----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHH-------hh----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999887764    10000 0000       00          00001 12345567778889999999999999


Q ss_pred             HHHhhhcCCCCCcchHHHHHHHh
Q 038758          186 EMEMIQTDMQPNTISLSGVLAAC  208 (354)
Q Consensus       186 ~m~~~~~~~~p~~~t~~~ll~~~  208 (354)
                      ...  .....|....+...+...
T Consensus       145 ~A~--~~~~~~~~~~~~~Al~~~  165 (192)
T d1hh8a_         145 LAT--SMKSEPRHSKIDKAMECV  165 (192)
T ss_dssp             HHH--TTCCSGGGGHHHHHHHHH
T ss_pred             HHH--hcCCCcchHHHHHHHHHH
Confidence            887  555555444454444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.8e-06  Score=61.96  Aligned_cols=154  Identities=10%  Similarity=-0.054  Sum_probs=84.1

Q ss_pred             HHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccc
Q 038758          138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKL  216 (354)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~  216 (354)
                      ..+...|++++|.+.|+++..++..+|..+...|.+.|++++|++.|++..  +  +.|+ ...|..+-.++.+.|+.++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl--~--ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI--N--RDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH--H--HhhhhhhhHHHHHHHHHhhccHHH
Confidence            344555666666666666655666666666666666666666666666665  2  2222 3455555556666666666


Q ss_pred             cchhhhHhhhhccccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758          217 GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL  295 (354)
Q Consensus       217 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  295 (354)
                      |...|+...........  -+.    ......... ...++..+-.++.+.|++++|.+.+.........|........+
T Consensus        89 A~~~~~kAl~~~~~n~~--~~~----~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al  162 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQL--IDY----KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM  162 (192)
T ss_dssp             HHHHHHHHHHTTTTCSE--EEC----GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             HHHHHHHHHHhCccCch--HHH----HHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            66555554432110000  000    000000000 11345566778999999999999999988665555555555445


Q ss_pred             HHhhcc
Q 038758          296 PACLKL  301 (354)
Q Consensus       296 ~~~~~~  301 (354)
                      ....+.
T Consensus       163 ~~~~~~  168 (192)
T d1hh8a_         163 ECVWKQ  168 (192)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            544433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.5e-06  Score=55.66  Aligned_cols=87  Identities=13%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ..+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...++...+.+ +.+...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            34566777777777777777653 3344557777777777777777777777777665 556667777777777777777


Q ss_pred             HHHHHHHhh
Q 038758          118 ITSGLFEEM  126 (354)
Q Consensus       118 ~a~~~~~~~  126 (354)
                      +|...|++.
T Consensus        89 ~A~~~~~~a   97 (117)
T d1elwa_          89 EAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=58.83  Aligned_cols=88  Identities=10%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -..|.+.|++++|...|++..+.. +-+...|..+...+...|+++.|.+.|+..++.. +-+...|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            344566777777777777776654 2344456666666667777777777777776654 44556666677777777777


Q ss_pred             hHHHHHHHhh
Q 038758          117 EITSGLFEEM  126 (354)
Q Consensus       117 ~~a~~~~~~~  126 (354)
                      ++|...+++.
T Consensus        95 ~eA~~~~~~a  104 (159)
T d1a17a_          95 RAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.3e-05  Score=60.58  Aligned_cols=88  Identities=6%  Similarity=-0.095  Sum_probs=55.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM  116 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  116 (354)
                      -..+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|+++.|.+.|+...+.. +-+..+|..+..+|.+.|++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~~~   88 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESY   88 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence            345566677777777777666553 2344456666666667777777777777666542 33455666666677777777


Q ss_pred             hHHHHHHHhh
Q 038758          117 EITSGLFEEM  126 (354)
Q Consensus       117 ~~a~~~~~~~  126 (354)
                      ++|...|++.
T Consensus        89 ~~A~~~~~~a   98 (201)
T d2c2la1          89 DEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=7.8e-06  Score=61.94  Aligned_cols=95  Identities=9%  Similarity=-0.103  Sum_probs=58.6

Q ss_pred             CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHh
Q 038758           63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK  142 (354)
Q Consensus        63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~  142 (354)
                      |+...+......+.+.|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|...|++.                
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a----------------   64 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA----------------   64 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHH----------------
Confidence            445555555666677777777777777766654 445556666666666666666666665554                


Q ss_pred             cCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          143 CRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                                    .+  | +..+|..+..+|.+.|++++|+..|+...
T Consensus        65 --------------l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          65 --------------LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             --------------TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --------------HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                          22  2 34456666666666666666666666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.2e-05  Score=52.92  Aligned_cols=99  Identities=10%  Similarity=-0.078  Sum_probs=75.3

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhc
Q 038758          167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN  246 (354)
Q Consensus       167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  246 (354)
                      -...+.+.|++++|+..|++..  .. -+-+...|..+-.++.+.|++++|...+....+..                  
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al--~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------   67 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAI--KL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------------   67 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH--hc-CCcchhhhhcccccccccccccccchhhhhHHHhc------------------
Confidence            3456777888888888888876  22 12335567777778888888888888888777765                  


Q ss_pred             ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758          247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI  291 (354)
Q Consensus       247 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  291 (354)
                         +.+...|..+..++...|++++|+..|++..+.  .|+...+
T Consensus        68 ---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~  107 (117)
T d1elwa_          68 ---PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--EANNPQL  107 (117)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred             ---cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHH
Confidence               457778889999999999999999999999854  5665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.97  E-value=1.2e-05  Score=54.65  Aligned_cols=86  Identities=8%  Similarity=-0.089  Sum_probs=54.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ..+.+.|++++|...|++..... +-+...|..+...+.+.|++++|...|+...+.. +.+...+..+..+|...|+.+
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            34556677777777777766653 2245556666666667777777777777666654 445566666666677777777


Q ss_pred             HHHHHHHh
Q 038758          118 ITSGLFEE  125 (354)
Q Consensus       118 ~a~~~~~~  125 (354)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=1.2e-05  Score=54.56  Aligned_cols=86  Identities=7%  Similarity=-0.059  Sum_probs=60.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcC
Q 038758           69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCR  144 (354)
Q Consensus        69 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~  144 (354)
                      -.....+.+.|++++|...|+...+.. +-+...|..+..++.+.|++++|+..|++.    +.+...|..+...|...|
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            344556778888999999888888765 446778888888888888888888888775    334455555555666666


Q ss_pred             chhHHHHHhcc
Q 038758          145 YLKVSHCKFSK  155 (354)
Q Consensus       145 ~~~~a~~~~~~  155 (354)
                      ++++|.+.|++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            66666555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.2e-05  Score=58.51  Aligned_cols=85  Identities=9%  Similarity=0.016  Sum_probs=60.3

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK  147 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~  147 (354)
                      ...+.+.|++++|...|+...+.. +-+...|..+..+|...|++++|.+.|++.    +.+..+|..+..+|...|+++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            345678888888888888888775 556777888888888888888888888775    333445555556666666666


Q ss_pred             HHHHHhccCC
Q 038758          148 VSHCKFSKIK  157 (354)
Q Consensus       148 ~a~~~~~~~~  157 (354)
                      +|...|++..
T Consensus        96 eA~~~~~~a~  105 (159)
T d1a17a_          96 AALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.4e-06  Score=56.06  Aligned_cols=92  Identities=8%  Similarity=-0.082  Sum_probs=58.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC---ChhhHHHHHHHHHHhccCCC-ceehhhHHHH
Q 038758           34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK---DYRVGKDVYDYMISIKFEGN-ACVKRPLLDL  109 (354)
Q Consensus        34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~  109 (354)
                      ..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.+   ++++|..+++.+.+.+..|+ ..++..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            356666677777777777777777654 345556666666665433   44557777777665442232 2356667777


Q ss_pred             HHhcCChhHHHHHHHhh
Q 038758          110 FIKCGRMEITSGLFEEM  126 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~  126 (354)
                      |.+.|++++|.+.|++.
T Consensus        82 y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHH
Confidence            77777777777777765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.2e-05  Score=52.62  Aligned_cols=101  Identities=6%  Similarity=-0.056  Sum_probs=64.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhH
Q 038758           69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV  148 (354)
Q Consensus        69 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~  148 (354)
                      ..++..+...+++++|.+.|+...+.+ +.++.++..+..++.+.++.+.                           +++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d---------------------------~~~   54 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDD---------------------------IRK   54 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHH---------------------------HHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHH---------------------------HHH
Confidence            456667777778888888888777765 5666777777777776554432                           223


Q ss_pred             HHHHhccCCC--CC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchH
Q 038758          149 SHCKFSKIKQ--KD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL  201 (354)
Q Consensus       149 a~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~  201 (354)
                      |+.+|++...  |+   ..+|..+..+|.+.|++++|.+.|+...  .  +.|+..-.
T Consensus        55 Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL--~--~~P~~~~A  108 (122)
T d1nzna_          55 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--Q--TEPQNNQA  108 (122)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCTTCHHH
T ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H--hCcCCHHH
Confidence            4444444432  21   2256667778888888888888888886  2  45654433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00043  Score=50.54  Aligned_cols=105  Identities=8%  Similarity=-0.032  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      .++..-..+.+.|++++|...|.+............              ..-......+.       ..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQALR-------LASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchhH-------HHHHHHHHHHHH
Confidence            344555678889999999999988776421111000              00000000000       113444555555


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      +.|++++|+..+++.    +.+...|..+..+|...|++++|...|++..
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            666666666555554    3344455555556666666666666665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00014  Score=50.39  Aligned_cols=51  Identities=16%  Similarity=0.194  Sum_probs=22.7

Q ss_pred             HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      .+.+.|++++|.+.|....+.+ +.+...+..+..+|.+.|+++.|.+.+++
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEK   63 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHH
Confidence            3444444444444444444432 23344444444444444444444444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00026  Score=49.04  Aligned_cols=91  Identities=7%  Similarity=0.023  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce-------ehhh
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC-------VKRP  105 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~  105 (354)
                      +..+-..+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|+++.|.+.++..++.. +.+..       +|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            3455667889999999999999999875 3467778889999999999999999999998764 22333       4444


Q ss_pred             HHHHHHhcCChhHHHHHHHh
Q 038758          106 LLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus       106 li~~~~~~g~~~~a~~~~~~  125 (354)
                      +...+...+++++|.+.|++
T Consensus        85 lg~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHH
Confidence            55566666777777776655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.0007  Score=49.80  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             hHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758          200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV  279 (354)
Q Consensus       200 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  279 (354)
                      .+..+..++.+.|++++|...++...+..                     +-+...|..++.+|.+.|+..+|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~---------------------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH---------------------PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC---------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34556666677777777777777776664                     457889999999999999999999999998


Q ss_pred             HH-----cCcCCCHhh
Q 038758          280 IV-----ANVKPNTVT  290 (354)
Q Consensus       280 ~~-----~g~~p~~~t  290 (354)
                      .+     .|+.|+..+
T Consensus       128 ~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2         128 KTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHhCCCcCHHH
Confidence            44     599998765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00023  Score=61.88  Aligned_cols=255  Identities=7%  Similarity=-0.097  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhCCCcCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc-eehhhHHHHHHhcCChhHHHHHHHh
Q 038758           48 EIVNLFYLMIDKGVRPDH-FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA-CVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        48 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                      +|.+.|++..+.  +|+. ..+..+-.++...+++++|   |+.+....  |+. ..++..-... + ..+..+.+.++.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence            577777777663  4543 3455566666666777654   56555432  211 1111111111 0 012233333433


Q ss_pred             hc-----cccchhh-HHH-HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC
Q 038758          126 MD-----QDFLVNN-SLI-DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ  195 (354)
Q Consensus       126 ~~-----~~~~~~~-~li-~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  195 (354)
                      ..     ++..-.. .+. ......+.++.|...++..-+   ++...+..+...+.+.|+.+.|...+....  ...  
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~--  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYI--  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHH--HHH--
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh--CCC--
Confidence            31     1111111 111 122234666777776665543   345566677777788888888877776554  211  


Q ss_pred             CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 038758          196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL  275 (354)
Q Consensus       196 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  275 (354)
                      | ..++..+-..+...+++++|...+.+..+..                     +.+...|+.+-..+...|+..+|+..
T Consensus       151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~---------------------P~~~~~~~~Lg~~~~~~~~~~~A~~~  208 (497)
T d1ya0a1         151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV---------------------PSNGQPYNQLAILASSKGDHLTTIFY  208 (497)
T ss_dssp             H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---------------------CCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            1 2355666677777888888888887777664                     34568999999999999999999999


Q ss_pred             HHHHHHcCcCCCHhhHHHHHHHhhccCcccCccc------cchhHHHHHHHHHHhcCChhHHHHHhhcC
Q 038758          276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------TGSFVWNALIDMYGRCGAIQKSRKIFVLM  338 (354)
Q Consensus       276 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m  338 (354)
                      |.+..... +|-..++..|...+.+......+.+      .-...+..+...+...+..+...++.+++
T Consensus       209 y~ral~~~-~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~  276 (497)
T d1ya0a1         209 YCRSIAVK-FPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL  276 (497)
T ss_dssp             HHHHHSSS-BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHHHhCC-CCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence            99998655 5677788888888877665544311      12233444455556667777666665544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.41  E-value=0.021  Score=46.06  Aligned_cols=261  Identities=10%  Similarity=0.003  Sum_probs=124.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758           38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME  117 (354)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  117 (354)
                      ..|.+.|.++.|..++..+..         |..++..+.+.++++.|.+++..   .   -+..+|..+...+.+..+..
T Consensus        22 ~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~---~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          22 DRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---H---TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---c---CCHHHHHHHHHHHHhCcHHH
Confidence            344466666666666655432         66666666666666666555432   2   13445666666666655544


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC---CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC
Q 038758          118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM  194 (354)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  194 (354)
                      -+.-.-.....+......++..|-..|.+++...+++...   ..+...++.++..|++.+ .++..+.++...      
T Consensus        87 la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s------  159 (336)
T d1b89a_          87 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW------  159 (336)
T ss_dssp             HHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS------
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc------
Confidence            3322111112222233456666677777777777666432   234445666666666643 233333333221      


Q ss_pred             CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 038758          195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD  274 (354)
Q Consensus       195 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  274 (354)
                        +..-...++..|-+.+-++++.-++..+           |.++.|..+.=.- .++..-....+..+.+.++.+...+
T Consensus       160 --~~y~~~k~~~~c~~~~l~~elv~Ly~~~-----------~~~~~A~~~~i~~-~~~~~~~~~f~e~~~k~~N~e~~~~  225 (336)
T d1b89a_         160 --SRVNIPKVLRAAEQAHLWAELVFLYDKY-----------EEYDNAIITMMNH-PTDAWKEGQFKDIITKVANVELYYR  225 (336)
T ss_dssp             --TTSCHHHHHHHHHTTTCHHHHHHHHHHT-----------TCHHHHHHHHHHS-TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred             --ccCCHHHHHHHHHHcCChHHHHHHHHhc-----------CCHHHHHHHHHHc-chhhhhHHHHHHHHHccCChHHHHH
Confidence              1222334445555555444444443322           2222222221111 2233334455666666666666555


Q ss_pred             HHHHHHHcCcCCCHhhHHHHHHHh-------------hccCcccCc--------cccchhHHHHHHHHHHhcCChhHHHH
Q 038758          275 LLRDVIVANVKPNTVTIVSVLPAC-------------LKLAALPQG--------LGTGSFVWNALIDMYGRCGAIQKSRK  333 (354)
Q Consensus       275 ~~~~m~~~g~~p~~~t~~~li~~~-------------~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~  333 (354)
                      +.....+.  .|+.  .+.++...             -+.+++...        -.-+..+.++|.+.|...++++.-++
T Consensus       226 ~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~~  301 (336)
T d1b89a_         226 AIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT  301 (336)
T ss_dssp             HHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHHHHH
Confidence            55554442  2321  22333332             223332222        11244678888888888888776665


Q ss_pred             HhhcC
Q 038758          334 IFVLM  338 (354)
Q Consensus       334 ~~~~m  338 (354)
                      ..+.-
T Consensus       302 ~i~~~  306 (336)
T d1b89a_         302 SIDAY  306 (336)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            55543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00023  Score=52.50  Aligned_cols=119  Identities=5%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcCchhHHH
Q 038758           72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH  150 (354)
Q Consensus        72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~  150 (354)
                      .......|++++|.+.|....+..  +....        ...+..+.+...-..+ +.....+..+...+.+.|++++|.
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            346678899999999999988652  11100        0111111122222222 223456677889999999999999


Q ss_pred             HHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh---hcCCCCCcch
Q 038758          151 CKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI---QTDMQPNTIS  200 (354)
Q Consensus       151 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~p~~~t  200 (354)
                      ..+++...   .+...|..++.++.+.|+.++|++.|+++...   +-|+.|+..+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99998864   36778999999999999999999999988420   3689998665

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.0012  Score=47.96  Aligned_cols=101  Identities=9%  Similarity=-0.030  Sum_probs=68.2

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-------------CcchHHHHHHHhhhhcCccccchhhhHhhhhcccc
Q 038758          165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-------------NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL  231 (354)
Q Consensus       165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  231 (354)
                      ......+.+.|++++|...|++... .....+             ...+|+.+..+|.+.|++++|...++..++..   
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~---   92 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVS-WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD---   92 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH-HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-HhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc---
Confidence            3344455666666666666665541 000000             01345566677788888888888888777764   


Q ss_pred             ccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758          232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV  289 (354)
Q Consensus       232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  289 (354)
                                        +.+..+|..+..+|...|++++|+..|++..+.  .|+..
T Consensus        93 ------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~  130 (170)
T d1p5qa1          93 ------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK  130 (170)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH
T ss_pred             ------------------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCH
Confidence                              347788888999999999999999999999864  46543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.017  Score=46.65  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI  111 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  111 (354)
                      -|..++..+.+.++++.|.+++.+..      +..+|..+...|.+......+     .+...+...++.....++..|-
T Consensus        42 d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye  110 (336)
T d1b89a_          42 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQ  110 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHH
Confidence            67778888888888888888876542      445677777777766554432     1122223334444566777788


Q ss_pred             hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhc
Q 038758          112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFS  154 (354)
Q Consensus       112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~  154 (354)
                      ..|.+++...+++..    ..+...++.++..|++.+. ++..+.+.
T Consensus       111 ~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~  156 (336)
T d1b89a_         111 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLE  156 (336)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHH
Confidence            888888888877765    4455567777777777654 33333333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.27  E-value=0.0018  Score=46.17  Aligned_cols=28  Identities=7%  Similarity=-0.057  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK   59 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~   59 (354)
                      .+..--..+.+.|++.+|+..|.+....
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~   46 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDF   46 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3444556677889999999999887753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00081  Score=48.92  Aligned_cols=27  Identities=4%  Similarity=0.113  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMID   58 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~   58 (354)
                      .+...-..+.+.|++++|++.|.+..+
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~   55 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLR   55 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455566677888999999888877653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.22  E-value=0.0029  Score=45.01  Aligned_cols=104  Identities=12%  Similarity=-0.025  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-------------CCcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758          164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-------------PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH  230 (354)
Q Consensus       164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  230 (354)
                      +..-...+.+.|++++|...|.+.........             ....+|..+..++.+.|+++.|...+...++..  
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--   97 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--   97 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc--
Confidence            34444556667777777777766541000000             012355667777788888888888887777664  


Q ss_pred             cccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758          231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT  290 (354)
Q Consensus       231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  290 (354)
                                         +.+..+|..+..++...|++++|+..|++..+.  .|+...
T Consensus        98 -------------------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~  136 (153)
T d2fbna1          98 -------------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLD  136 (153)
T ss_dssp             -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred             -------------------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence                               457788989999999999999999999998865  465544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.04  E-value=0.032  Score=43.18  Aligned_cols=220  Identities=10%  Similarity=-0.047  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758           33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVKRPLLD  108 (354)
Q Consensus        33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  108 (354)
                      +..|-..+-..+++++|++.|++..+.|   +...+..|-..|..    ..+...+...++...+.+   +......+..
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~   78 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence            3445456667899999999999998877   44555555555554    557888888888877665   2223334444


Q ss_pred             HHHh----cCChhHHHHHHHhhccc--cchhhHHHHHHHh----cCchhHHHHHhccCC-CCChhhhHHHHHHHHh----
Q 038758          109 LFIK----CGRMEITSGLFEEMDQD--FLVNNSLIDFYAK----CRYLKVSHCKFSKIK-QKDLVSWNAMLAGYAL----  173 (354)
Q Consensus       109 ~~~~----~g~~~~a~~~~~~~~~~--~~~~~~li~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----  173 (354)
                      .+..    ..+.+.|...++.....  ......+...+..    ......+...+.... ..+...+..+...+..    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~  158 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGT  158 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCc
Confidence            4433    46777787777766221  1222223223322    233445555554433 2455666667776665    


Q ss_pred             CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758          174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS  249 (354)
Q Consensus       174 ~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (354)
                      ..+...+...++...  +.|.   ......+-..+..    ..+.+.|...|....+.|                     
T Consensus       159 ~~~~~~~~~~~~~a~--~~g~---~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---------------------  212 (265)
T d1ouva_         159 PKDLKKALASYDKAC--DLKD---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---------------------  212 (265)
T ss_dssp             CCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---------------------
T ss_pred             ccccccchhhhhccc--cccc---cccccchhhhcccCcccccchhhhhhhHhhhhccc---------------------
Confidence            344556666666665  4332   2222223222222    345556666665555544                     


Q ss_pred             CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCcCC
Q 038758          250 TRDVVVWNSIISAFVR----SGQVVDALDLLRDVIVANVKP  286 (354)
Q Consensus       250 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p  286 (354)
                        +...+..|-..|.+    ..+.++|.+.|++..+.|-.+
T Consensus       213 --~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         213 --NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             --CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             --CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence              34455555555554    347888999999988877544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.00  E-value=0.0017  Score=47.05  Aligned_cols=60  Identities=5%  Similarity=-0.140  Sum_probs=47.9

Q ss_pred             ccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       129 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ....|..+..+|.+.|++++|+..+++..+   .+...|..+..++.+.|++++|.+.|+...
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            344566677888888888888888877654   356678888899999999999999999887

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0027  Score=54.90  Aligned_cols=164  Identities=7%  Similarity=-0.135  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHhCCCcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758           47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE  124 (354)
Q Consensus        47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  124 (354)
                      ..+.+.++...+....++..-....+..+.  ..+.++.+.+.+....+.. +++...+..+...+.+.|+.+.|...+.
T Consensus        66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~  144 (497)
T d1ya0a1          66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS  144 (497)
T ss_dssp             HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred             HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence            345555555554433344333322222221  2233444443333322222 3456677788888888899888887666


Q ss_pred             hh-cc-ccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758          125 EM-DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI  199 (354)
Q Consensus       125 ~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~  199 (354)
                      .. .+ ...++..+...+...|++++|...|++..+  | +...|+.+...+...|+..+|...|.+..  . --.|...
T Consensus       145 ~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral--~-~~~~~~~  221 (497)
T d1ya0a1         145 SSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI--A-VKFPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH--S-SSBCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH--h-CCCCCHH
Confidence            54 11 224667788889999999999999987763  4 55789999999999999999999998885  2 3356677


Q ss_pred             hHHHHHHHhhhhcCc
Q 038758          200 SLSGVLAACAQVKGV  214 (354)
Q Consensus       200 t~~~ll~~~~~~~~~  214 (354)
                      ++..+...+.+....
T Consensus       222 a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         222 ASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhhh
Confidence            888888887765543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.94  E-value=0.00094  Score=52.44  Aligned_cols=110  Identities=11%  Similarity=0.035  Sum_probs=52.2

Q ss_pred             cCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---cc-ccchhhHHHHHHHhcCchhHHHHHh
Q 038758           78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQ-DFLVNNSLIDFYAKCRYLKVSHCKF  153 (354)
Q Consensus        78 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~  153 (354)
                      .|++++|...++..++.. +-|...+..+...|+..|++++|.+.++..   .| ....+..+...+...+..+++..-.
T Consensus         9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence            344444444444444443 334444444444444445554444444444   11 2222222223332233333322222


Q ss_pred             cc--CC-CC-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          154 SK--IK-QK-DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       154 ~~--~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                      ..  .. .| +...+......+.+.|+.++|.+.+++..
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            11  11 12 22334444566788899999999999886

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.92  E-value=0.00038  Score=49.35  Aligned_cols=121  Identities=10%  Similarity=0.028  Sum_probs=64.3

Q ss_pred             ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758           77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI  156 (354)
Q Consensus        77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  156 (354)
                      +.+.+++|.+.|+...+.. |.++..+..+..++...+++..+.+-.+                    .+++|+..|++.
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~--------------------~~~~Ai~~~~kA   67 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ--------------------MIQEAITKFEEA   67 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------HHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHH--------------------HHHHHHHHHHHH
Confidence            3445666666666666554 4455566666666655544433332211                    233344444433


Q ss_pred             CC---CChhhhHHHHHHHHhCC-----------ChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758          157 KQ---KDLVSWNAMLAGYALGG-----------FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG  222 (354)
Q Consensus       157 ~~---~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  222 (354)
                      .+   .+..+|..+..+|...|           .+++|.+.|+...    .+.|+..+|..-+..+      .++.+++.
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal----~l~P~~~~~~~~L~~~------~ka~~~~~  137 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV----DEQPDNTHYLKSLEMT------AKAPQLHA  137 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHH------HTHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc----ccCCCHHHHHHHHHHH------HHHHHHHH
Confidence            31   23445555555554433           3567777777765    4567777666555444      34556666


Q ss_pred             Hhhhhc
Q 038758          223 YVLRHH  228 (354)
Q Consensus       223 ~~~~~~  228 (354)
                      ++.+.|
T Consensus       138 e~~k~~  143 (145)
T d1zu2a1         138 EAYKQG  143 (145)
T ss_dssp             HHHHSS
T ss_pred             HHHHHh
Confidence            655554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.86  E-value=0.00065  Score=53.41  Aligned_cols=116  Identities=8%  Similarity=-0.060  Sum_probs=82.0

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT  119 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  119 (354)
                      ..+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            456899999999999999874 4566789999999999999999999999998764 33344555555555554544443


Q ss_pred             HHHHHhh----cc-ccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          120 SGLFEEM----DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       120 ~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      ..-...-    +| ....+......+.+.|+.++|.+.+++..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3322221    11 22233344567888899999999987764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.81  E-value=0.0026  Score=46.03  Aligned_cols=116  Identities=12%  Similarity=-0.063  Sum_probs=71.3

Q ss_pred             cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758           67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL  146 (354)
Q Consensus        67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~  146 (354)
                      .+......+.+.|+++.|.+.|......-  +......            .......+.  .....|+.+..+|.+.|++
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~~~~~~------------~~~~~~~~~--~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLS------------EKESKASES--FLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC------------HHHHHHHHH--HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhhccc------------hhhhhhcch--hHHHHHHhHHHHHHHhhhc
Confidence            35556667778888888888887766431  1100000            000000000  1123455566777777888


Q ss_pred             hHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758          147 KVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS  202 (354)
Q Consensus       147 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~  202 (354)
                      ++|+..++....   .+...|..+..++...|++++|.+.|+...  .  +.|+.....
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al--~--l~P~n~~~~  135 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL--E--VNPQNKAAR  135 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--SCTTCHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--hCCCCHHHH
Confidence            888877776653   456678888889999999999999999886  2  456544433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.81  E-value=0.068  Score=41.18  Aligned_cols=187  Identities=9%  Similarity=-0.047  Sum_probs=106.8

Q ss_pred             ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChhHHHHHHHhhcc--ccchhhHHHHH
Q 038758           66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEITSGLFEEMDQ--DFLVNNSLIDF  139 (354)
Q Consensus        66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~--~~~~~~~li~~  139 (354)
                      ..+..|-..+.+.+++++|.++|+...+.|   +...+..|-..|..    ..+...+...+.....  +......+...
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~   79 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence            345566667778899999999999998876   44556667777766    5678888888777622  23333344444


Q ss_pred             HHh----cCchhHHHHHhccCCCC-ChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758          140 YAK----CRYLKVSHCKFSKIKQK-DLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ  210 (354)
Q Consensus       140 ~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~  210 (354)
                      +..    ..+.+.|...++..... .......+...+..    ......+...+....  .   ..+...+..+...+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~---~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--D---LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--H---TTCHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhh--c---ccccchhhhhhhhhcc
Confidence            432    45667777777655432 22333333333332    234455556655543  2   2334455555555554


Q ss_pred             hcCccc----cchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 038758          211 VKGVKL----GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR----SGQVVDALDLLRDVIVA  282 (354)
Q Consensus       211 ~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~  282 (354)
                      ......    +...+....+                       ..+......+-..|..    ..+.++|+..|++..+.
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~-----------------------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACD-----------------------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHH-----------------------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCcccccccchhhhhcccc-----------------------ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            332222    2222222222                       2244444445444544    56899999999998877


Q ss_pred             C
Q 038758          283 N  283 (354)
Q Consensus       283 g  283 (354)
                      |
T Consensus       212 g  212 (265)
T d1ouva_         212 E  212 (265)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.79  E-value=0.008  Score=43.30  Aligned_cols=104  Identities=8%  Similarity=-0.056  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhh-HHHHHHHHHHhccCCCceehhhHHHHH
Q 038758           32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV-GKDVYDYMISIKFEGNACVKRPLLDLF  110 (354)
Q Consensus        32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~  110 (354)
                      .+...-..+.+.|++.+|...|.+....  .|...             .... .....+.+       ...+|+.+..+|
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~-------------~~~~~~~~~~~~~-------~~~~~~Nla~~~   74 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY-------------GLSEKESKASESF-------LLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC-------------SCCHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh-------------ccchhhhhhcchh-------HHHHHHhHHHHH
Confidence            3455566788899999999999886542  01000             0000 00000000       011344455555


Q ss_pred             HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758          111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK  157 (354)
Q Consensus       111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (354)
                      .+.|++++|...+++.    +.+..+|..+..+|...|++++|...|++..
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555555554    3344455555555555555555555555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.71  E-value=0.0018  Score=45.69  Aligned_cols=126  Identities=10%  Similarity=-0.003  Sum_probs=78.7

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc----------CChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL----------KDYRVGKDVYDYMISIKFEGNACVKRPLLDL  109 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  109 (354)
                      |-+.+.+++|...|+...+.. +.+...+..+-.++...          +.+++|...|+...+.. +.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            456788999999999998875 44555666666666643          34567888888887765 5566778888877


Q ss_pred             HHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC--CCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758          110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEM  187 (354)
Q Consensus       110 ~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  187 (354)
                      |...|++......                   ..+++++|.+.|++..  .|+...|..-+..+      .+|.+++.+.
T Consensus        85 y~~~g~~~~~~~~-------------------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~  139 (145)
T d1zu2a1          85 YTSFAFLTPDETE-------------------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHCCCHHH-------------------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHH
T ss_pred             HHHcccchhhHHH-------------------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHH
Confidence            7766543211110                   0123456666666555  36655555444433      4666777766


Q ss_pred             HhhhcCC
Q 038758          188 EMIQTDM  194 (354)
Q Consensus       188 ~~~~~~~  194 (354)
                      .  +.|+
T Consensus       140 ~--k~~~  144 (145)
T d1zu2a1         140 Y--KQGL  144 (145)
T ss_dssp             H--HSSS
T ss_pred             H--HHhc
Confidence            5  5543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.45  E-value=0.0069  Score=43.03  Aligned_cols=94  Identities=13%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             hHHHH--HHHHHhcCChhHHHHHHHHHHhCCC-cCC----------cccHHHHHHHHhccCChhhHHHHHHHHHHhc---
Q 038758           32 NWTSM--MGMYNVLGYYEEIVNLFYLMIDKGV-RPD----------HFVCPKVYKACSELKDYRVGKDVYDYMISIK---   95 (354)
Q Consensus        32 ~y~~l--i~~~~~~~~~~~a~~~~~~m~~~~~-~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---   95 (354)
                      +|+.+  ...+.+.|++++|+..|++..+... .|+          ...|+.+..++...|+++.|.+.++...+..   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44555  4456677999999999999876421 121          2457777888888888888888888877531   


Q ss_pred             --cCCC-----ceehhhHHHHHHhcCChhHHHHHHHh
Q 038758           96 --FEGN-----ACVKRPLLDLFIKCGRMEITSGLFEE  125 (354)
Q Consensus        96 --~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~  125 (354)
                        ..++     ...++.+..+|...|++++|...|++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence              1111     12455666777777777777776665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.37  E-value=0.0066  Score=43.16  Aligned_cols=99  Identities=7%  Similarity=-0.042  Sum_probs=65.1

Q ss_pred             cHHHH--HHHHhccCChhhHHHHHHHHHHhcc-CCC----------ceehhhHHHHHHhcCChhHHHHHHHhhccccchh
Q 038758           67 VCPKV--YKACSELKDYRVGKDVYDYMISIKF-EGN----------ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN  133 (354)
Q Consensus        67 ~~~~l--l~~~~~~~~~~~a~~~~~~m~~~~~-~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  133 (354)
                      .|..+  .......|++++|.+.|++..+..- .|+          ...|+.+..+|.+.|++++|...+++        
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~--------   80 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK--------   80 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh--------
Confidence            45555  4455677999999999999886531 122          23566677777777777777765444        


Q ss_pred             hHHHHHHHhcCchhHHHHHhccCCC--C-----ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758          134 NSLIDFYAKCRYLKVSHCKFSKIKQ--K-----DLVSWNAMLAGYALGGFREEVTNLLDEME  188 (354)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~  188 (354)
                                     |.+++.+...  +     ....++.+..+|...|++++|.+.|++..
T Consensus        81 ---------------al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          81 ---------------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             ---------------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                           3333333222  1     12246677888999999999999998875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.013  Score=37.45  Aligned_cols=58  Identities=9%  Similarity=-0.134  Sum_probs=24.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC---c--CC-cccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758           37 MGMYNVLGYYEEIVNLFYLMIDKGV---R--PD-HFVCPKVYKACSELKDYRVGKDVYDYMISI   94 (354)
Q Consensus        37 i~~~~~~~~~~~a~~~~~~m~~~~~---~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~   94 (354)
                      -..+.+.|++++|...|++..+...   .  ++ ..++..+..++.+.|++++|.+.+++..+.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3344445555555555554433210   0  00 123444444444555555555555544443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.57  E-value=0.17  Score=33.61  Aligned_cols=48  Identities=19%  Similarity=0.097  Sum_probs=30.8

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHH
Q 038758           40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY   90 (354)
Q Consensus        40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   90 (354)
                      +...|..++..+++.+....   .+..-||.+|--....-+-+...++++.
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~   59 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDK   59 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHH
Confidence            44568888888888887753   3555677777666555555555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.022  Score=36.33  Aligned_cols=57  Identities=12%  Similarity=-0.016  Sum_probs=46.6

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhcc-----CCC-ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           70 KVYKACSELKDYRVGKDVYDYMISIKF-----EGN-ACVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .+...+.+.|+++.|.+.|++..+...     .++ ..+++.|..++.+.|++++|...+++.
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            455678899999999999999886531     111 346888999999999999999999997

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.59  E-value=0.36  Score=31.96  Aligned_cols=121  Identities=15%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             cCchhHHHHHhccCCC-CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC----------------CcchHHHHH
Q 038758          143 CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP----------------NTISLSGVL  205 (354)
Q Consensus       143 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p----------------~~~t~~~ll  205 (354)
                      .|.+++..++..+... .+..-||-+|--....-+-+...++++.+-+ --++.|                +...+...+
T Consensus        15 dG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~-~FDls~C~Nlk~vv~C~~~~n~~se~vdlAL   93 (161)
T d1wy6a1          15 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS-YFDLDKCQNLKSVVECGVINNTLNEHVNKAL   93 (161)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG-GSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             hhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh-hcCchhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence            3445555555444432 2333455555555555555555555555521 111111                122233334


Q ss_pred             HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC
Q 038758          206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK  285 (354)
Q Consensus       206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  285 (354)
                      ..+.+.|.-++..+++..+.+.+                     +++....-.+..+|-+.|...++-+++.+..+.|++
T Consensus        94 d~lv~~~kkd~Ld~i~~~l~kn~---------------------~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          94 DILVIQGKRDKLEEIGREILKNN---------------------EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--C---------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            44444555555555555444433                     566777777888999999999999999999888864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=91.32  E-value=0.98  Score=30.15  Aligned_cols=111  Identities=5%  Similarity=-0.015  Sum_probs=59.7

Q ss_pred             CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChhHH
Q 038758           44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEIT  119 (354)
Q Consensus        44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a  119 (354)
                      .++++|..+|++.-+.|   +...+..|.  .....+.++|.++++...+.|   ++.....|-..|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            46778888888887766   222233332  234456777777777766655   22333334444432    2334445


Q ss_pred             HHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC-CChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCC
Q 038758          120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDM  194 (354)
Q Consensus       120 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~  194 (354)
                      .+.|++                              .-+ -++.....|-..|..    ..+.++|.++|+...  +.|.
T Consensus        79 ~~~~~~------------------------------aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa--~~G~  126 (133)
T d1klxa_          79 AQYYSK------------------------------ACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC--RLGS  126 (133)
T ss_dssp             HHHHHH------------------------------HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTTC
T ss_pred             HHHHhh------------------------------hhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH--HCCC
Confidence            444444                              322 234444445444444    346778888887775  5444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.43  E-value=0.45  Score=29.75  Aligned_cols=61  Identities=10%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758           46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL  107 (354)
Q Consensus        46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  107 (354)
                      .=++..-++.+...++.|+.....+.+++|.+.+++..|.++|+-.+... .++...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            33566666677777788999999999999999999999999998877442 34455665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=88.04  E-value=1.2  Score=29.60  Aligned_cols=65  Identities=9%  Similarity=-0.192  Sum_probs=40.5

Q ss_pred             ChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcc
Q 038758          160 DLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHI  229 (354)
Q Consensus       160 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~  229 (354)
                      ++.....|-..|..    ..+.++|.++|+...  +.|..+.   ...+-..|..    ..+.++|..+++...+.|.
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~~g~~~a---~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--GLNDQDG---CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTCHHH---HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhh--ccCcchH---HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            34444444444443    356788999999887  6554332   3333333332    4578899999998888776

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.07  E-value=2.2  Score=26.53  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758          179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH  227 (354)
Q Consensus       179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  227 (354)
                      ++.+-++.+.  ...+.|+.....+.++||.+.+|+..|.++++-++..
T Consensus        24 e~rrgmN~l~--~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          24 ELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4555666666  6777777777778888888777777777777766644

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=82.41  E-value=11  Score=30.71  Aligned_cols=58  Identities=9%  Similarity=-0.002  Sum_probs=36.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758          258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL  337 (354)
Q Consensus       258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  337 (354)
                      ..+......+++..+...++.|...   |  .+                    ...-...+.+++...|+.+.|...|..
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l~~~---~--~~--------------------~~r~~YW~gRa~~~~G~~~~A~~~~~~  344 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARLPME---A--KE--------------------KDEWRYWQADLLLERGREAEAKEILHQ  344 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTT---G--GG--------------------SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCcc---c--cc--------------------HHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence            3444455667777777777666321   1  10                    122245677888888888888888887


Q ss_pred             CCC
Q 038758          338 MPH  340 (354)
Q Consensus       338 m~~  340 (354)
                      ...
T Consensus       345 ~a~  347 (450)
T d1qsaa1         345 LMQ  347 (450)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.20  E-value=2.5  Score=27.72  Aligned_cols=47  Identities=15%  Similarity=0.122  Sum_probs=32.5

Q ss_pred             CChhhHHHHHHHHHHhccCCCc-eehhhHHHHHHhcCChhHHHHHHHhh
Q 038758           79 KDYRVGKDVYDYMISIKFEGNA-CVKRPLLDLFIKCGRMEITSGLFEEM  126 (354)
Q Consensus        79 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~  126 (354)
                      .+.+++..+++...+.+ +.+. ..+-.|.-+|.+.|+++.|.+.++.+
T Consensus        52 ~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            46677888888877643 3332 35556777788888888888887776