Citrus Sinensis ID: 038762
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | 2.2.26 [Sep-21-2011] | |||||||
| P15922 | 602 | Exo-poly-alpha-D-galactur | N/A | no | 0.869 | 0.387 | 0.285 | 1e-21 | |
| A7PZL3 | 491 | Probable polygalacturonas | no | no | 0.75 | 0.409 | 0.285 | 1e-17 | |
| P20041 | 529 | Polygalacturonase OS=Rals | no | no | 0.761 | 0.385 | 0.264 | 2e-10 | |
| O23147 | 431 | Polygalacturonase ADPG1 O | no | no | 0.753 | 0.468 | 0.252 | 2e-10 | |
| P35338 | 410 | Exopolygalacturonase OS=Z | N/A | no | 0.701 | 0.458 | 0.25 | 5e-10 | |
| Q9LW07 | 456 | Probable polygalacturonas | no | no | 0.779 | 0.458 | 0.248 | 7e-10 | |
| P26216 | 410 | Exopolygalacturonase OS=Z | N/A | no | 0.701 | 0.458 | 0.245 | 1e-09 | |
| Q8RY29 | 433 | Polygalacturonase ADPG2 O | no | no | 0.723 | 0.448 | 0.283 | 3e-09 | |
| P35339 | 410 | Exopolygalacturonase OS=Z | N/A | no | 0.701 | 0.458 | 0.231 | 2e-08 | |
| P35336 | 467 | Polygalacturonase OS=Acti | N/A | no | 0.697 | 0.400 | 0.259 | 4e-08 |
| >sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 54/287 (18%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHED 75
++ +GAKGDG +T+AIQ AIDACP G C++ P G + T + LKS +TLN+ +
Sbjct: 153 NITQYGAKGDGTTLNTSAIQKAIDACPTG---CRIDVPAGVFKTGALWLKSDMTLNLLQG 209
Query: 76 ATLLGGPRIEDYPEESSRWYVV-----------LAENATDVG------ITGGGVVDGQAM 118
ATLLG DYP+ + V + +N++ VG I G G++DG
Sbjct: 210 ATLLGSDNAADYPDAYKIYSYVSQVRPASLLNAIDKNSSAVGTFKNIRIVGKGIIDGNGW 269
Query: 119 KFVV-TKNEIKNVMVSW----------------NHTGACSG---------DECRPRLVGF 152
K K+E+ N + + N A + R LV
Sbjct: 270 KRSADAKDELGNTLPQYVKSDNSKVSKDGILAKNQVAAAVATGMDTKTAYSQRRSSLVTL 329
Query: 153 LGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITR 212
G +N + +V +R PA + + +N + + I+ FN N DG++ +S N ++
Sbjct: 330 RGVQNAYIADVTIRNPANHGIMFLESENV-VENSVIHQTFNANNGDGVEFGNSQNIMVFN 388
Query: 213 VQIDTGDDAICPKTYTG-------PLYNLTATDSWIRTKSSAIKLGS 252
DTGDD+I G P N +++ R A+ LGS
Sbjct: 389 SVFDTGDDSINFAAGMGQDAQKQEPSQNAWLFNNFFRHGHGAVVLGS 435
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Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers. Erwinia chrysanthemi (taxid: 556) EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 8EC: 2 |
| >sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 30/231 (12%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRLKSHVTL 70
H S++DFG GDG +T A Q A+ Q+ P G++LT + L SH TL
Sbjct: 61 HSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTL 120
Query: 71 NIHEDATLLGGPRIEDYP-------------EESSRW-YVVLAENATDVGITG-GGVVDG 115
+H DA LL I +P + R+ ++ N TDV ITG G +DG
Sbjct: 121 FLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDG 180
Query: 116 QAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHI 175
Q + W RP L+ + ++ + N+ L W +H
Sbjct: 181 QGGLW-------------WQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHP 227
Query: 176 VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226
V N I+ ++I +PN DGI+ + NT I I +GDD + K+
Sbjct: 228 VYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKS 278
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Vitis vinifera (taxid: 29760) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P20041|PGLR_RALSL Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 46/250 (18%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGE--YLTATIRLKSHVTLNIHEDATLLGGPRIEDY 87
D + IQSAID CP G V+ GE +L+ +++LKS VTL I TL DY
Sbjct: 72 DASRIQSAIDNCPAGQAVKLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADY 131
Query: 88 ------------PEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWN 135
+ S +++A + GI G G +DG+ +VT N + W+
Sbjct: 132 DNGLGTCGTATTSNDKSCNALIVARDTAGSGIVGAGAIDGRGGS-LVTSGPNANRLTWWD 190
Query: 136 --HTGACSG-DECRPRLVGFL-----------------------GCRNVNVWNVRLREPA 169
+ G ++ PRL+ G V W +++ P+
Sbjct: 191 IAYLNKTKGLNQQNPRLIQTYNGSAFTLYGVTVQNSPNFHIVTTGTSGVTAWGIKIVTPS 250
Query: 170 Y-WCLHIVRCDNTFIRDMSIYGDFNTP----NNDGIDIEDSNNTVITRVQIDTGDDAICP 224
+ + +C + D TP N DG D S N V+ I+TGDD +
Sbjct: 251 LAYAVAGYKCPSGSTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLAYSYINTGDDHVAV 310
Query: 225 KTYTGPLYNL 234
K +GP NL
Sbjct: 311 KASSGPTRNL 320
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Contributes to the wilt disease production on tomato. Ralstonia solanacearum (taxid: 305) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 3 LLLLLSTTHIHIH----SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE-Y 57
+L L+S+ + SV +FGAKGDG DT A + A N P G+ Y
Sbjct: 52 VLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTY 111
Query: 58 LTATIRLKS--HVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGG--GVV 113
L + R + N TL + DY +++ W ++ E+ ++ I GG G++
Sbjct: 112 LLKSTRFRGPCKSLRNFQILGTLSASTKRSDYKDKN-HWLIL--EDVNNLSIDGGSTGII 168
Query: 114 DGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRP-----RLVGFLGCRNVNVWNVRLREP 168
+G + W + +C D+ +P + +N+NV N+R++
Sbjct: 169 NGNGKTW-------------WQN--SCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNA 213
Query: 169 AYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
+ I +C+ + ++ I ++PN DGI I ++ N ++ I TGDD I
Sbjct: 214 QQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCI 267
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Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 24/212 (11%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLNI 72
+ GA G+G T A+Q A + G + P G++L + K VT+ +
Sbjct: 43 ITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQV 102
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
D LL + Y E + ++ +N ITG G +DGQ
Sbjct: 103 --DGNLLATTDLSQYKEHGNWIEILRVDNLV---ITGKGNLDGQGPAV------------ 145
Query: 133 SWNHTGACSGDECR--PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
W+ +C+ P + N V V L ++ +++ +C N I+D+++
Sbjct: 146 -WSKNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTA 204
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGI + DS+ IT I GDD I
Sbjct: 205 PGDSPNTDGIHMGDSSGITITNTVIGVGDDCI 236
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May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. Zea mays (taxid: 4577) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 EC: 7 |
| >sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 24/233 (10%)
Query: 3 LLLLLSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLTAT 61
L L T + V FGA GDG+ D+ A A +A G Q P G ++
Sbjct: 12 LFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQP 71
Query: 62 IRLKSHV--TLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMK 119
++ + T + L P ++ + +W +L + + I G G ++GQ
Sbjct: 72 LKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQW--ILFTDIEGLVIEGDGEINGQGSS 129
Query: 120 FVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCD 179
+ W H G+ RP + F C N+ + + + +HI C+
Sbjct: 130 W-------------WEHKGS------RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECN 170
Query: 180 NTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLY 232
I + I ++PN DGID+ S+N VI I TGDD I + T ++
Sbjct: 171 YVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIH 223
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 24/212 (11%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLNI 72
+ GA G+G T A+Q A + G + P G++L + K VT+ +
Sbjct: 43 ITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQV 102
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
D LL + Y + + ++ +N ITG G +DGQ
Sbjct: 103 --DGNLLATTDLSQYKDHGNWIEILRVDNLV---ITGKGNLDGQGPAV------------ 145
Query: 133 SWNHTGACSGDECR--PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
W+ +C+ P + N V V L ++ +++ RC + I+D+++
Sbjct: 146 -WSKNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTA 204
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGI + DS+ IT I GDD I
Sbjct: 205 PGDSPNTDGIHMGDSSGITITNTVIGVGDDCI 236
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May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. Zea mays (taxid: 4577) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 EC: 7 |
| >sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE-YLTATIRLKS--HVTLNI 72
SV DFGAKGDG DT A +A N + P G YL +I+L + L +
Sbjct: 69 SVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILTV 128
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGG--GVVDGQAMKFVVTKNEIKNV 130
TL + DY ++ S+W ++ + ++ + GG GVVDG + +N K
Sbjct: 129 QIFGTLSASQKRSDY-KDISKW--IMFDGVNNLSVDGGDTGVVDGNGETWW--QNSCKR- 182
Query: 131 MVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
N C+ P + F +++ V N+++R + I +C N + ++ +
Sbjct: 183 ----NKAKPCTK---APTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTA 235
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGI I ++ N ++ I TGDD I
Sbjct: 236 PADSPNTDGIHITNTQNIRVSESIIGTGDDCI 267
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Polygalacturonase involved in cell separation in the final stages of pod shatter, in anther dehiscence and in floral organ abscission. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 24/212 (11%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLNI 72
+ GA G+G T A+Q A + G + P G++L + K VT+ +
Sbjct: 43 ITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQV 102
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
+ LL + Y + + ++ +N ITG G +DGQ
Sbjct: 103 N--GNLLATTDLSQYKDHGNWIEILRVDNLV---ITGKGKLDGQGPAV------------ 145
Query: 133 SWNHTGACSGDECR--PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
W+ +C+ P + N V + L ++ +++ +C + I+D+++
Sbjct: 146 -WSKNSCVKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTA 204
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGI + DS+ IT I GDD I
Sbjct: 205 PGDSPNTDGIHMGDSSGVTITNTVIGVGDDCI 236
|
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase. Zea mays (taxid: 4577) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 EC: 7 |
| >sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLN 71
+V DFGAKGDG DT A + A A + P YL I KS +T+
Sbjct: 91 NVDDFGAKGDG-RDDTKAFEKAWKAACSSTSSAVLLVPKKNYLVRPISFSGPCKSGLTMQ 149
Query: 72 IHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVM 131
I+ T+ DY ++ W V ++ ++ + GGG ++G N
Sbjct: 150 IY--GTIEASDDRSDYRKDGRHWLVF--DSVQNLRVEGGGTING-------------NGK 192
Query: 132 VSWNHTGACSGDE---CR--PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDM 186
+ W ++ C ++ C+ P + F ++V V N+++ + C N ++
Sbjct: 193 IWWQNS--CKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNL 250
Query: 187 SIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
+ N+PN DGI + + N I+ I TGDD I
Sbjct: 251 MVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCI 286
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Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation. Actinidia deliciosa (taxid: 3627) EC: 3 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | ||||||
| 224137954 | 445 | predicted protein [Populus trichocarpa] | 0.944 | 0.568 | 0.8 | 1e-115 | |
| 255571614 | 818 | pentatricopeptide repeat-containing prot | 0.940 | 0.308 | 0.790 | 1e-114 | |
| 359481919 | 1053 | PREDICTED: putative pentatricopeptide re | 0.951 | 0.242 | 0.734 | 1e-109 | |
| 297820578 | 589 | hypothetical protein ARALYDRAFT_324272 [ | 0.944 | 0.429 | 0.749 | 1e-107 | |
| 17473561 | 325 | putative protein [Arabidopsis thaliana] | 0.944 | 0.778 | 0.749 | 1e-106 | |
| 18410809 | 490 | glycoside hydrolase family 28 protein / | 0.944 | 0.516 | 0.749 | 1e-106 | |
| 4678268 | 614 | putative protein [Arabidopsis thaliana] | 0.944 | 0.412 | 0.749 | 1e-106 | |
| 357509809 | 482 | Polygalacturonase [Medicago truncatula] | 0.940 | 0.522 | 0.736 | 1e-106 | |
| 356572058 | 466 | PREDICTED: exo-poly-alpha-D-galacturonos | 0.940 | 0.540 | 0.740 | 1e-105 | |
| 449501892 | 463 | PREDICTED: exo-poly-alpha-D-galacturonos | 0.996 | 0.576 | 0.637 | 2e-99 |
| >gi|224137954|ref|XP_002322693.1| predicted protein [Populus trichocarpa] gi|222867323|gb|EEF04454.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/255 (80%), Positives = 220/255 (86%), Gaps = 2/255 (0%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACP--PGNKPCQVRFPPGEYLTATIRLKSHVTLNIH 73
SV DFGA GDGIHYDT AIQS I++CP P K C V FPPG YLTATI LKS+V LNI
Sbjct: 14 SVTDFGAIGDGIHYDTEAIQSTINSCPTTPPTKACHVNFPPGIYLTATIHLKSNVVLNIQ 73
Query: 74 EDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVS 133
E ATLLGG ++EDYP+E +RWYVVLAENA+DVGITGGGVVDGQ +KFV NE KNVMVS
Sbjct: 74 EGATLLGGTKLEDYPKEFNRWYVVLAENASDVGITGGGVVDGQGLKFVKRFNERKNVMVS 133
Query: 134 WNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN 193
WN TGAC GDECRPRLVGF+GC NV VWNVRL EPAYWCLHIV+C NT I D+SIYGDFN
Sbjct: 134 WNSTGACLGDECRPRLVGFIGCTNVKVWNVRLSEPAYWCLHIVQCLNTHISDVSIYGDFN 193
Query: 194 TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSA 253
+PNNDGIDIEDSNNT+ITR IDTGDDAICPKTYTGP+YNLTATD WIRTKSSAIKLGSA
Sbjct: 194 SPNNDGIDIEDSNNTLITRCHIDTGDDAICPKTYTGPIYNLTATDCWIRTKSSAIKLGSA 253
Query: 254 SWFDFKALVFDNITI 268
SWF+FK LVFDNITI
Sbjct: 254 SWFEFKGLVFDNITI 268
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/253 (79%), Positives = 213/253 (84%), Gaps = 1/253 (0%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHED 75
SV DFGA G+G YDT IQS IDACPP C V+FPPG+YLTATI LKS V L I +
Sbjct: 42 SVTDFGATGNGHDYDTVPIQSTIDACPP-TTTCHVKFPPGKYLTATIHLKSKVVLEIQKG 100
Query: 76 ATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWN 135
ATLLGG R+EDYP+E SRWYVVLAENA+DVGITGGG VDGQ KFV +E+KNVMVSWN
Sbjct: 101 ATLLGGTRMEDYPKEFSRWYVVLAENASDVGITGGGAVDGQGSKFVKRFSEVKNVMVSWN 160
Query: 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP 195
TGAC GDECRPRLVGF+GC NV V NV L EPAYWCLHIVRC NT I D+SIYGDFNTP
Sbjct: 161 QTGACLGDECRPRLVGFIGCTNVRVSNVSLTEPAYWCLHIVRCQNTSIHDVSIYGDFNTP 220
Query: 196 NNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASW 255
NNDG+DIEDSNNT ITR +IDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK GSASW
Sbjct: 221 NNDGVDIEDSNNTAITRCRIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKFGSASW 280
Query: 256 FDFKALVFDNITI 268
FDFK LVFDNITI
Sbjct: 281 FDFKNLVFDNITI 293
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/256 (73%), Positives = 212/256 (82%), Gaps = 1/256 (0%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNI 72
H+ SV D+GA GDG+HYDTAAIQ+ IDAC Q+RFPPG YLTAT+ +KS V L +
Sbjct: 37 HLFSVADYGAIGDGLHYDTAAIQATIDACHSAGGG-QIRFPPGTYLTATVYIKSGVYLVV 95
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
E A +LGG ++EDYPEES RWYV+LAENATDVGITGGGV+DG MKFV E KNVMV
Sbjct: 96 EEGAKILGGTKLEDYPEESRRWYVLLAENATDVGITGGGVIDGHGMKFVKRFEEAKNVMV 155
Query: 133 SWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDF 192
SWN TGAC GDECRPRLVGFLGCRNV VWN+RL EPAYWCLH+V C+NT I D+SIYGDF
Sbjct: 156 SWNETGACLGDECRPRLVGFLGCRNVRVWNIRLNEPAYWCLHLVGCNNTSIHDVSIYGDF 215
Query: 193 NTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGS 252
NTPNNDGIDIEDSNNTVITR I TGDD+ICPKT GPLYNLT T+ W+R++SSAIKLGS
Sbjct: 216 NTPNNDGIDIEDSNNTVITRCSISTGDDSICPKTSNGPLYNLTVTNCWLRSRSSAIKLGS 275
Query: 253 ASWFDFKALVFDNITI 268
S++DFK LVFDNITI
Sbjct: 276 GSFYDFKGLVFDNITI 291
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820578|ref|XP_002878172.1| hypothetical protein ARALYDRAFT_324272 [Arabidopsis lyrata subsp. lyrata] gi|297324010|gb|EFH54431.1| hypothetical protein ARALYDRAFT_324272 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/259 (74%), Positives = 213/259 (82%), Gaps = 6/259 (2%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDAC----PPGNKPCQVRFPPGEYLTATIRLKSHVTLN 71
SV DFGA GDGI+YDT+A+QS IDAC + C+V FP G YLTA + L+S V L+
Sbjct: 35 SVTDFGATGDGINYDTSAVQSTIDACNRHYTSSSSICRVTFPSGNYLTAKLHLRSGVVLD 94
Query: 72 IHEDATLLGGPRIEDY--PEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKN 129
+ E+A LLGGPRIEDY E SS WYVV+A NATDVGITGGG +DGQ KFVV +E KN
Sbjct: 95 VTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKN 154
Query: 130 VMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY 189
VMVSWN TGAC GDECRPRLVGF+ RNV +WN+ LREPAYWCLHIVRC+NT + D+SI
Sbjct: 155 VMVSWNQTGACLGDECRPRLVGFVDSRNVEIWNITLREPAYWCLHIVRCENTSVHDVSIL 214
Query: 190 GDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249
GDFNTPNNDGIDIEDSNNTVITR IDTGDDAICPKTYTGPLYNLTATD WIRTKSSAIK
Sbjct: 215 GDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIK 274
Query: 250 LGSASWFDFKALVFDNITI 268
LGSASWFDFK LVFDNITI
Sbjct: 275 LGSASWFDFKGLVFDNITI 293
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17473561|gb|AAL38256.1| putative protein [Arabidopsis thaliana] gi|28059069|gb|AAO29984.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/259 (74%), Positives = 212/259 (81%), Gaps = 6/259 (2%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDAC----PPGNKPCQVRFPPGEYLTATIRLKSHVTLN 71
SV DFGA GDGI+YDT+AIQS IDAC + C+V FP G YLTA + L+S V L+
Sbjct: 36 SVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILD 95
Query: 72 IHEDATLLGGPRIEDY--PEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKN 129
+ E+A LLGGPRIEDY E SS WYVV+A NATDVGITGGG +DGQ KFVV +E KN
Sbjct: 96 VTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKN 155
Query: 130 VMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY 189
VMVSWN TGAC GDECRPRLVGF+ NV +WN+ LREPAYWCLHIVRC+NT + D+SI
Sbjct: 156 VMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSIL 215
Query: 190 GDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249
GDFNTPNNDGIDIEDSNNTVITR IDTGDDAICPKTYTGPLYNLTATD WIRTKSSAIK
Sbjct: 216 GDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIK 275
Query: 250 LGSASWFDFKALVFDNITI 268
LGSASWFDFK LVFDNITI
Sbjct: 276 LGSASWFDFKGLVFDNITI 294
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18410809|ref|NP_567055.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|332646180|gb|AEE79701.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/259 (74%), Positives = 212/259 (81%), Gaps = 6/259 (2%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDAC----PPGNKPCQVRFPPGEYLTATIRLKSHVTLN 71
SV DFGA GDGI+YDT+AIQS IDAC + C+V FP G YLTA + L+S V L+
Sbjct: 36 SVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILD 95
Query: 72 IHEDATLLGGPRIEDY--PEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKN 129
+ E+A LLGGPRIEDY E SS WYVV+A NATDVGITGGG +DGQ KFVV +E KN
Sbjct: 96 VTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKN 155
Query: 130 VMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY 189
VMVSWN TGAC GDECRPRLVGF+ NV +WN+ LREPAYWCLHIVRC+NT + D+SI
Sbjct: 156 VMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSIL 215
Query: 190 GDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249
GDFNTPNNDGIDIEDSNNTVITR IDTGDDAICPKTYTGPLYNLTATD WIRTKSSAIK
Sbjct: 216 GDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIK 275
Query: 250 LGSASWFDFKALVFDNITI 268
LGSASWFDFK LVFDNITI
Sbjct: 276 LGSASWFDFKGLVFDNITI 294
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4678268|emb|CAB41176.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/259 (74%), Positives = 212/259 (81%), Gaps = 6/259 (2%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDAC----PPGNKPCQVRFPPGEYLTATIRLKSHVTLN 71
SV DFGA GDGI+YDT+AIQS IDAC + C+V FP G YLTA + L+S V L+
Sbjct: 36 SVTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILD 95
Query: 72 IHEDATLLGGPRIEDY--PEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKN 129
+ E+A LLGGPRIEDY E SS WYVV+A NATDVGITGGG +DGQ KFVV +E KN
Sbjct: 96 VTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKN 155
Query: 130 VMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY 189
VMVSWN TGAC GDECRPRLVGF+ NV +WN+ LREPAYWCLHIVRC+NT + D+SI
Sbjct: 156 VMVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSIL 215
Query: 190 GDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249
GDFNTPNNDGIDIEDSNNTVITR IDTGDDAICPKTYTGPLYNLTATD WIRTKSSAIK
Sbjct: 216 GDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIK 275
Query: 250 LGSASWFDFKALVFDNITI 268
LGSASWFDFK LVFDNITI
Sbjct: 276 LGSASWFDFKGLVFDNITI 294
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509809|ref|XP_003625193.1| Polygalacturonase [Medicago truncatula] gi|355500208|gb|AES81411.1| Polygalacturonase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/254 (73%), Positives = 215/254 (84%), Gaps = 2/254 (0%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFP-PGEYLTATIRLKSHVTLNIHE 74
SV ++GA GDGIHYDT +IQ+AID+CP + PC++ FP PG YLTATI L+S V LN+
Sbjct: 49 SVTEYGAIGDGIHYDTVSIQTAIDSCP-YSIPCRITFPSPGNYLTATIFLRSGVVLNVEP 107
Query: 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSW 134
AT+LGGPR +DYP+ESSRWYVVLAENATDVGI GGGVVDGQA KFVV NE KNVMVSW
Sbjct: 108 GATILGGPRQKDYPKESSRWYVVLAENATDVGIAGGGVVDGQAEKFVVRYNERKNVMVSW 167
Query: 135 NHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNT 194
N TG C GDECRPRL+GFLGC+NV V+NV L +PAYWCLH+VR +N I+D++IYGD N
Sbjct: 168 NQTGDCLGDECRPRLIGFLGCKNVKVFNVTLNQPAYWCLHLVRSENITIQDIAIYGDLNI 227
Query: 195 PNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS 254
PNNDGIDIEDSNNTVITR IDTGDDAICPK+ TGP++NLT T+SWIR+KSSAIK GSAS
Sbjct: 228 PNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVHNLTVTNSWIRSKSSAIKFGSAS 287
Query: 255 WFDFKALVFDNITI 268
WF+FK VFDNITI
Sbjct: 288 WFEFKHFVFDNITI 301
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572058|ref|XP_003554187.1| PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 211/254 (83%), Gaps = 2/254 (0%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFP-PGEYLTATIRLKSHVTLNIHE 74
SV DFGA GDG+ YDT AIQSAI++CP G+ PC V FP PG+YLTAT+ LKS V LN+
Sbjct: 33 SVADFGAAGDGLRYDTEAIQSAINSCPEGD-PCHVTFPAPGKYLTATVFLKSGVVLNVES 91
Query: 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSW 134
AT+LGG R+EDYPEES RWYVV+AENATDVGI GGG VDGQA KFVV ++ KNVMVSW
Sbjct: 92 GATILGGTRLEDYPEESWRWYVVVAENATDVGIRGGGAVDGQAAKFVVREDPRKNVMVSW 151
Query: 135 NHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNT 194
N TGAC GDECRPRL+GFL C NV V N+ L +PAYWCLH+VR +N I+D++IYGDFN
Sbjct: 152 NQTGACLGDECRPRLIGFLDCNNVQVSNITLNQPAYWCLHLVRSNNICIQDIAIYGDFNI 211
Query: 195 PNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS 254
PNNDGIDIEDSNNTVITR IDTGDDAICPK+ TGP+YNLT TD WIR+KSSAIKLGSAS
Sbjct: 212 PNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTDCWIRSKSSAIKLGSAS 271
Query: 255 WFDFKALVFDNITI 268
WFDFK VFDNI I
Sbjct: 272 WFDFKHFVFDNIAI 285
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501892|ref|XP_004161486.1| PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/281 (63%), Positives = 215/281 (76%), Gaps = 14/281 (4%)
Query: 1 VQLLLLLSTTHIHI-------------HSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKP 47
+QL L H H SV DFGA GDG+HYDT AIQSAI++CP ++
Sbjct: 7 IQLFFFLLIIHSHSAIPSIRLLRRSTSFSVTDFGAIGDGLHYDTTAIQSAINSCPAPSR- 65
Query: 48 CQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGI 107
C V FPPG YLTATI L+S V L+I AT+L G ++EDYP +SSRW+ V+AENA+DVGI
Sbjct: 66 CYVTFPPGTYLTATIWLRSGVVLDIQPGATVLAGTKMEDYPADSSRWFAVVAENASDVGI 125
Query: 108 TGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLRE 167
+GGG VDGQ +KFV ++ KNVMVSWN TGAC GDECRP LVGF+G V V NV +
Sbjct: 126 SGGGTVDGQGLKFVEKFDKRKNVMVSWNKTGACYGDECRPDLVGFIGSNKVRVSNVSFNQ 185
Query: 168 PAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227
PA+WCLH+VRC+NT I D+SIYGDF+TPNNDGIDIEDSNNT+ITR +IDTGDDAICPK+
Sbjct: 186 PAHWCLHLVRCENTVIEDVSIYGDFDTPNNDGIDIEDSNNTLITRCRIDTGDDAICPKSS 245
Query: 228 TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268
GP++NLTAT+ WIRTKSSAIKLGSASWF+F ++FDN+TI
Sbjct: 246 NGPVFNLTATNCWIRTKSSAIKLGSASWFNFTRMLFDNLTI 286
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 268 | ||||||
| TAIR|locus:2076591 | 490 | AT3G57790 [Arabidopsis thalian | 0.940 | 0.514 | 0.709 | 1.8e-94 | |
| TAIR|locus:2061396 | 477 | AT2G23900 [Arabidopsis thalian | 0.768 | 0.431 | 0.279 | 1.8e-16 | |
| TAIR|locus:2152980 | 449 | AT5G41870 [Arabidopsis thalian | 0.458 | 0.273 | 0.335 | 3.8e-16 | |
| TAIR|locus:2101313 | 469 | AT3G48950 [Arabidopsis thalian | 0.932 | 0.533 | 0.253 | 6.2e-16 | |
| TAIR|locus:2119156 | 475 | AT4G33440 [Arabidopsis thalian | 0.332 | 0.187 | 0.344 | 1.5e-14 | |
| TAIR|locus:504954979 | 449 | AT5G49215 [Arabidopsis thalian | 0.850 | 0.507 | 0.287 | 3.1e-14 | |
| TAIR|locus:2128524 | 444 | AT4G23820 [Arabidopsis thalian | 0.511 | 0.308 | 0.303 | 4.3e-14 | |
| TAIR|locus:2202170 | 506 | AT1G19170 [Arabidopsis thalian | 0.458 | 0.243 | 0.293 | 4.4e-14 | |
| TAIR|locus:2078531 | 484 | AT3G42950 [Arabidopsis thalian | 0.458 | 0.254 | 0.315 | 1.3e-13 | |
| TAIR|locus:2098038 | 471 | AT3G62110 [Arabidopsis thalian | 0.302 | 0.171 | 0.296 | 1e-12 |
| TAIR|locus:2076591 AT3G57790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 183/258 (70%), Positives = 200/258 (77%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDAC----PPGNKPCQVRFPPGEYLTATIRLKSHVTLNI 72
V DFGA GDGI+YDT+AIQS IDAC + C+V FP G YLTA + L+S V L++
Sbjct: 37 VTDFGATGDGINYDTSAIQSTIDACNRHYTSFSSICRVVFPSGNYLTAKLHLRSGVILDV 96
Query: 73 HEDATLLGGPRIEDY-PEE-SSRWYVVLAENAXXXXXXXXXXXXXQAMKFVVTKNEIKNV 130
E+A LLGGPRIEDY P E SS WYVV+A NA Q KFVV +E KNV
Sbjct: 97 TENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNV 156
Query: 131 MVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
MVSWN TGAC GDECRPRLVGF+ NV +WN+ LREPAYWCLHIVRC+NT + D+SI G
Sbjct: 157 MVSWNQTGACLGDECRPRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSILG 216
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL 250
DFNTPNNDGIDIEDSNNTVITR IDTGDDAICPKTYTGPLYNLTATD WIRTKSSAIKL
Sbjct: 217 DFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSSAIKL 276
Query: 251 GSASWFDFKALVFDNITI 268
GSASWFDFK LVFDNITI
Sbjct: 277 GSASWFDFKGLVFDNITI 294
|
|
| TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 60/215 (27%), Positives = 96/215 (44%)
Query: 19 DFGAKGDGIHYDTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDA 76
+FGA GDG +T A + AI P + Q+ PPG++LT + L SH TL I + A
Sbjct: 60 EFGAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGA 119
Query: 77 TLLGGPRIEDYPEESSRWYVVLAENAXXXXXXXXXXXXXQAMKFVVTKNE--IKNVMVSW 134
T+L +YP + +A V+T N I W
Sbjct: 120 TILASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGT-NLTDVVITGNNGTINGQGKYW 178
Query: 135 ---NHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGD 191
+G G RP + + +NV + N+ + + W +H V C+N ++ ++I
Sbjct: 179 WVKYRSGGFKGIT-RPYTIEIIFSQNVQISNITIIDSPAWNIHPVYCNNVIVKGVTILAP 237
Query: 192 FNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226
++PN DGI+ + NT+I + +GDD I K+
Sbjct: 238 IDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKS 272
|
|
| TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 44/131 (33%), Positives = 65/131 (49%)
Query: 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDS 205
RP L+ F N+ V +V L+ +W LH V C N + ++I ++ N DGID + S
Sbjct: 181 RPGLIEFNNSTNILVSHVVLQNSPFWTLHPVYCSNVVVHHVTILAPTDSYNTDGIDPDSS 240
Query: 206 NNTVITRVQIDTGDDAICPKT---YTGPLYNLTATDSWIR--TKSS---AIKLGSASWFD 257
+N I I TGDD + K+ G YN + D IR T SS I +GS +
Sbjct: 241 SNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSRDITIRRITGSSPFAGIAIGSETSGG 300
Query: 258 FKALVFDNITI 268
+ + +NIT+
Sbjct: 301 IQNVTVENITL 311
|
|
| TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 67/264 (25%), Positives = 111/264 (42%)
Query: 19 DFGAKGDGIHYDTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDA 76
DFGA GDG +T A ++AI + Q+ PPG++LT + L SH TL I A
Sbjct: 49 DFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQRGA 108
Query: 77 TLLGGPRIEDYPEESSRWYVVLAENAXXXXXXXXXXXXXQAMKFVVTKNE--IKNV-MVS 133
T+L ++P + + V+T N I
Sbjct: 109 TILASQDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYW 168
Query: 134 WNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN 193
W+ RP L+ L +N+ + N+ L + W +H V C++ ++ +++
Sbjct: 169 WDKFKKKQFKITRPYLIEILFSKNIQISNITLIDSPSWNIHPVYCNSVIVKSVTVLAPVT 228
Query: 194 TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT--------YTGPLYNLTATD-SWIRTK 244
PN DGI+ + NT+I I +GDD I K+ + P L+ + I K
Sbjct: 229 VPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQQLSIRRLTCISPK 288
Query: 245 SSAIKLGSASWFDFKALVFDNITI 268
S+ + LGS K + +++T+
Sbjct: 289 SAGVALGSEMSGGIKDVRIEDVTL 312
|
|
| TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 32/93 (34%), Positives = 45/93 (48%)
Query: 134 WNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN 193
WN T R L+ N+ + N+ L +W +H V C N IR+M+I N
Sbjct: 199 WNRTLV----HTRGHLIELKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPMN 254
Query: 194 TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226
PN DGID + S N I I++GDD + K+
Sbjct: 255 APNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 287
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| TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 74/257 (28%), Positives = 111/257 (43%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDACPP-GNKP-CQVRFPPGEYLTATIRLKSHVTLNIHE 74
+ DFGA GDG +T A Q+A+ +K Q+ PPG +LT + L SH+TL + +
Sbjct: 45 ITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFLEK 104
Query: 75 DATLLGGPRIEDYPEESSRWYVVLA-----ENAXXXXXXXXXXXXXQAMKFVVTKNEIKN 129
DA +L ++ S W V A + VV +
Sbjct: 105 DAVILAS-------QDPSHWQVTDALPSYGRGIDLPGKRYMSLINGDMLHDVVVTGDNGT 157
Query: 130 V----MVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVR-LREPAYWCLHIVRCDNTFIR 184
+ +V W+ + S + RP LV F+ NV V N+ L PAY +H V C N +I
Sbjct: 158 IDGQGLVWWDRFNSHSLEYSRPHLVEFVSAENVIVSNLTFLNAPAY-TIHSVYCRNLYIH 216
Query: 185 DMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI-----CPK---TYTGPLYNLTA 236
++ +P GI + S N I I+ G DAI C + +Y P N+
Sbjct: 217 RVTANTCPESPYTIGIVPDSSENVCIQESSINMGYDAISLKSGCDEYGLSYARPTANVQI 276
Query: 237 TDSWIRTKS-SAIKLGS 252
+ ++R S S+I GS
Sbjct: 277 RNVYLRAASGSSISFGS 293
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| TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 44/145 (30%), Positives = 70/145 (48%)
Query: 132 VSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGD 191
V WN + + RP L+ F + + + NV + +W +H V C N I ++I
Sbjct: 162 VWWNMWRSRTLKYTRPNLIEFKDSKEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAP 221
Query: 192 FNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT---YTGPLYNLTATDSWIR--TKSS 246
++PN DGID + S N I I TGDD + K+ G Y +++ IR T SS
Sbjct: 222 QDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSNITIRRITGSS 281
Query: 247 ---AIKLGSASWFDFKALVFDNITI 268
I +GS + K ++ ++IT+
Sbjct: 282 PFAGIAIGSETSGGIKNIIAEHITL 306
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| TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN-TPNNDGIDIED 204
R LV + ++ + N+ +R+ +W LH C N IR+++I PN DGID +
Sbjct: 223 RGPLVQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDS 282
Query: 205 SNNTVITRVQIDTGDDAICPKT--------YTGPLYNLTATDSWIRTKSSA-IKLGSASW 255
+ VI I TGDDAI K+ Y P N+ + +R+ SA + +GS
Sbjct: 283 CEDMVIEDCYISTGDDAIAIKSGWDQFGIAYGRPSTNILIRNLVVRSVISAGVSIGSEMS 342
Query: 256 FDFKALVFDNITI 268
+ +N+ I
Sbjct: 343 GGISNVTIENLLI 355
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| TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 42/133 (31%), Positives = 59/133 (44%)
Query: 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGD-FNTPNNDGIDIED 204
R LV + ++ N+ LR+ +W LH C N I +M+I F PN DGID +
Sbjct: 201 RGPLVQIMWSSDIVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDS 260
Query: 205 SNNTVITRVQIDTGDDAICPK--------TYTGPLYNLTATDSWIRTKSSA-IKLGSASW 255
+ +I I GDD I K TY P N+ + IR+ SA I +GS
Sbjct: 261 CEDMLIENSYISVGDDGIAIKSGWDQYGTTYGKPSKNILIRNLIIRSMVSAGISIGSEMS 320
Query: 256 FDFKALVFDNITI 268
+ +NI I
Sbjct: 321 GGVSNITVENILI 333
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| TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDS 205
RP LV + + + N+ +W +H V C + +++++I +PN DG+D + S
Sbjct: 178 RPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPDSS 237
Query: 206 NNTVITRVQIDTGDDAICPKT 226
N I I TGDD + K+
Sbjct: 238 TNVCIEDCYIVTGDDLVSIKS 258
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVI.1648.1 | hypothetical protein (445 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 268 | |||
| COG5434 | 542 | COG5434, PGU1, Endopygalactorunase [Cell envelope | 2e-47 | |
| PLN02218 | 431 | PLN02218, PLN02218, polygalacturonase ADPG | 9e-14 | |
| PLN02188 | 404 | PLN02188, PLN02188, polygalacturonase/glycoside hy | 2e-13 | |
| PLN03003 | 456 | PLN03003, PLN03003, Probable polygalacturonase At3 | 5e-11 | |
| pfam12708 | 222 | pfam12708, Pectate_lyase_3, Pectate lyase superfam | 9e-10 | |
| PLN02793 | 443 | PLN02793, PLN02793, Probable polygalacturonase | 2e-08 | |
| PLN03010 | 409 | PLN03010, PLN03010, polygalacturonase | 4e-08 | |
| pfam00295 | 325 | pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam | 5e-08 | |
| PLN02155 | 394 | PLN02155, PLN02155, polygalacturonase | 1e-07 |
| >gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-47
Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 38/287 (13%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHED 75
SV D GA GDG +TAAIQ+AIDAC V P G YL+ + LKS+VTL++ E
Sbjct: 84 SVSDDGAVGDGATDNTAAIQAAIDACASAGG-GTVLLPAGTYLSGPLFLKSNVTLHLAEG 142
Query: 76 ATLLGGPRIEDYPE-----ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNV 130
ATLL +DYP + V A ++ + I+G G+ DG+A ++ N
Sbjct: 143 ATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKA--DLLIAGNSSNR 200
Query: 131 MVSWNH---------------------TGACSGDECRPRLVGFLGCRNVNVWNVRLREPA 169
W G RPR V GCRNV + + ++
Sbjct: 201 KEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSP 260
Query: 170 YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT--- 226
W +H V CDN R+++I + N DG D +N +I + DTGDD I K+
Sbjct: 261 LWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAG 319
Query: 227 -----YTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268
GP N+ + + + + LGS + + ++ +
Sbjct: 320 LDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVM 366
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Length = 542 |
| >gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 9e-14
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 14/210 (6%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE-YLTATIRLKSHVT--LNI 72
SV DFGAKGDG DT A +A N + P G YL +I+L +
Sbjct: 69 SVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTV 128
Query: 73 HEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
TL + DY ++ S+W + N V GVVDG + +N K
Sbjct: 129 QIFGTLSASQKRSDY-KDISKWIMFDGVNNLSVDGGSTGVVDGNGETW--WQNSCKR--- 182
Query: 133 SWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDF 192
N C+ P + F +++ V N+R+R + I +C N + ++ +
Sbjct: 183 --NKAKPCTK---APTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPA 237
Query: 193 NTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGI I ++ N ++ I TGDD I
Sbjct: 238 DSPNTDGIHITNTQNIRVSNSIIGTGDDCI 267
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Length = 431 |
| >gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 52/218 (23%), Positives = 80/218 (36%), Gaps = 30/218 (13%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK------S 66
+ V FGA+ +G D+ A +A A + PPG Y ++ S
Sbjct: 35 FLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVS 94
Query: 67 HVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNE 126
+T + L D+ E W + +TGGG DGQ
Sbjct: 95 SLTFTLKAATDLSRYGSGNDWIEFG--W-------VNGLTLTGGGTFDGQGAA------- 138
Query: 127 IKNVMVSWNHTGACSGDECR--PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIR 184
+W +C+ P V F+ N V + ++ + +V C N
Sbjct: 139 ------AWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGS 192
Query: 185 DMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
+ I ++PN DGI IE S+ I+ +I TGDD I
Sbjct: 193 GLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCI 230
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Length = 404 |
| >gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 5e-11
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 26/210 (12%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLTATIRLKSHVTLNIHED 75
V FGA GDG+ D+ A A +A G Q P G ++ ++ + +
Sbjct: 26 VTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCK-STPVF 84
Query: 76 ATLLG---GPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMV 132
+LG P ++ + +W +L + + I G G ++GQ +
Sbjct: 85 VQMLGKLVAPSKGNWKGDKDQW--ILFTDIEGLVIEGDGEINGQGSSW------------ 130
Query: 133 SWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDF 192
W H G+ RP + F C N+ + + + +HI C+ I + I
Sbjct: 131 -WEHKGS------RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPE 183
Query: 193 NTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
++PN DGID+ S+N VI I TGDD I
Sbjct: 184 SSPNTDGIDVGASSNVVIQDCIIATGDDCI 213
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Length = 456 |
| >gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-10
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 36/209 (17%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL-TATIRLKSHVTLNIHE 74
+V DFGAKGDG+ DTAAIQ AI A V FPPG YL ++ I L S
Sbjct: 3 NVKDFGAKGDGVTDDTAAIQKAICA-SATTGGAVVYFPPGTYLVSSPIILYSGT------ 55
Query: 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSW 134
TL+G + V+ +A + GG A +I+N ++
Sbjct: 56 --TLVG---------DGKNPPVLKLSDAAPSFVIVGGNAVIDAGDPY---RQIRNFVIDG 101
Query: 135 NHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNT 194
+ + + ++ NV + P + M
Sbjct: 102 TGVSPDRTGSG----IHWQVAQATSIENVEIINPGLHGIDFN---------MGTANTIPG 148
Query: 195 PNNDGIDIED-SNNTVITRVQIDTGDDAI 222
N+ GI I++ S ++ + + GDD
Sbjct: 149 NNHQGIFIDNGSGGVMVEDLVFNGGDDGA 177
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This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222 |
| >gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 17 VIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPG-EYLTATIRL----KSHVTL 70
V DFGAKGDG+ DT A + A AC K ++ P G +L I L K+ +TL
Sbjct: 55 VGDFGAKGDGVTDDTQAFKEAWKMACSSKVK-TRIVIPAGYTFLVRPIDLGGPCKAKLTL 113
Query: 71 NIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNV 130
I T++ P+ D + + + + + GGG V+G ++ +I
Sbjct: 114 QI--SGTIIA-PKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKI--- 167
Query: 131 MVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG 190
NHT C P + F C+++ V N+ + + + C I + +
Sbjct: 168 ----NHTNPCRH---APTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIA 220
Query: 191 DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
+PN DGI I S VI + TGDD I
Sbjct: 221 PATSPNTDGIHISASRGVVIKDSIVRTGDDCI 252
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Length = 443 |
| >gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 4e-08
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 32/215 (14%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE--YLTATIRLK---SH 67
++V+ FGAKGDG D+ A A +A G P YL I K
Sbjct: 45 QNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKS 104
Query: 68 VTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEI 127
++ + D ++ I + S+ ++ + + + I G G +DG+ F
Sbjct: 105 TSIKVQLDGIIVAPSNIVAWSNPKSQMWISFS-TVSGLMIDGSGTIDGRGSSF------- 156
Query: 128 KNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMS 187
W C N+ + + + + I C+ I ++
Sbjct: 157 ------WEALHISK-------------CDNLTINGITSIDSPKNHISIKTCNYVAISKIN 197
Query: 188 IYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222
I +PN DGIDI S N I I TGDD I
Sbjct: 198 ILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCI 232
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Length = 409 |
| >gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 58 LTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQA 117
+ + KS T+ I T + + T++G +GGG +DGQ
Sbjct: 21 TSLSGPCKSGATVTIQ--GTTTADYKESQGKLIW-----ITGTKITNLGASGGGTIDGQG 73
Query: 118 MKFVVTKNEIKNVMVSWNHTGACSGDECR--PRLVGFLGCRNVNVWNVRLREPAYWCLHI 175
+ + N C+ P+ + F N + + ++ + +
Sbjct: 74 PAWWDGSCKKSN--------------GCKKKPKFLRFHKLDNSTITGLNIKNSPVFHFSV 119
Query: 176 VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTG 229
C N D++I +PN DGIDI S+ I+ I TGDD I + +G
Sbjct: 120 EDCKNLTASDITIDAPAGSPNTDGIDIGSSSGVTISNTTIGTGDDCIAIGSGSG 173
|
Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. Length = 325 |
| >gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 29/228 (12%)
Query: 7 LSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL-- 64
+S++ ++ +V+ FGAK DG+ TAA A V P G +L I
Sbjct: 20 VSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGG 79
Query: 65 --KSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVV 122
KS +T + A + P EDY + Y +L + GG D +A F
Sbjct: 80 PCKSKITFQV---AGTVVAP--EDYRTFGNSGYWILFNKVNRFSLVGG-TFDARANGFWS 133
Query: 123 TKNEIKNVMVSWNHTGACSGDECRP--RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDN 180
+ SG C P R + F ++V + V+ + + C N
Sbjct: 134 CRK---------------SGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTN 178
Query: 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD--AICPKT 226
+R++ + N+PN DG ++ S T + TGDD AI P T
Sbjct: 179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGT 226
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Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| PLN02218 | 431 | polygalacturonase ADPG | 100.0 | |
| PLN02793 | 443 | Probable polygalacturonase | 100.0 | |
| PLN02155 | 394 | polygalacturonase | 100.0 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 100.0 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 100.0 | |
| PLN03010 | 409 | polygalacturonase | 100.0 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 100.0 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 100.0 | |
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 99.97 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 99.93 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 99.77 | |
| PF03718 | 582 | Glyco_hydro_49: Glycosyl hydrolase family 49; Inte | 99.77 | |
| PLN02793 | 443 | Probable polygalacturonase | 99.69 | |
| PLN03003 | 456 | Probable polygalacturonase At3g15720 | 99.68 | |
| PLN02218 | 431 | polygalacturonase ADPG | 99.68 | |
| PLN02155 | 394 | polygalacturonase | 99.65 | |
| PLN02188 | 404 | polygalacturonase/glycoside hydrolase family prote | 99.64 | |
| PF00295 | 326 | Glyco_hydro_28: Glycosyl hydrolases family 28; Int | 99.62 | |
| PLN03010 | 409 | polygalacturonase | 99.61 | |
| COG5434 | 542 | PGU1 Endopygalactorunase [Cell envelope biogenesis | 99.41 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 98.97 | |
| TIGR03805 | 314 | beta_helix_1 parallel beta-helix repeat-containing | 98.92 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 98.8 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 98.75 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 98.73 | |
| TIGR03808 | 455 | RR_plus_rpt_1 twin-arg-translocated uncharacterize | 98.72 | |
| PF13229 | 158 | Beta_helix: Right handed beta helix region; PDB: 2 | 98.69 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 98.67 | |
| PF05048 | 236 | NosD: Periplasmic copper-binding protein (NosD); I | 98.66 | |
| PLN02480 | 343 | Probable pectinesterase | 98.56 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 98.47 | |
| PF12541 | 277 | DUF3737: Protein of unknown function (DUF3737) ; I | 98.42 | |
| PLN02773 | 317 | pectinesterase | 98.35 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 98.24 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 98.23 | |
| PF03718 | 582 | Glyco_hydro_49: Glycosyl hydrolase family 49; Inte | 98.16 | |
| smart00656 | 190 | Amb_all Amb_all domain. | 98.13 | |
| PLN02671 | 359 | pectinesterase | 98.1 | |
| COG3866 | 345 | PelB Pectate lyase [Carbohydrate transport and met | 98.09 | |
| PLN02682 | 369 | pectinesterase family protein | 98.08 | |
| PLN02432 | 293 | putative pectinesterase | 98.07 | |
| PRK10531 | 422 | acyl-CoA thioesterase; Provisional | 98.07 | |
| PLN02665 | 366 | pectinesterase family protein | 97.99 | |
| PLN02634 | 359 | probable pectinesterase | 97.98 | |
| PLN02176 | 340 | putative pectinesterase | 97.97 | |
| PLN02933 | 530 | Probable pectinesterase/pectinesterase inhibitor | 97.95 | |
| PLN02497 | 331 | probable pectinesterase | 97.94 | |
| PLN02304 | 379 | probable pectinesterase | 97.93 | |
| PLN02301 | 548 | pectinesterase/pectinesterase inhibitor | 97.9 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 97.85 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 97.83 | |
| PLN02484 | 587 | probable pectinesterase/pectinesterase inhibitor | 97.82 | |
| PLN02170 | 529 | probable pectinesterase/pectinesterase inhibitor | 97.81 | |
| PF01095 | 298 | Pectinesterase: Pectinesterase; InterPro: IPR00007 | 97.8 | |
| PLN02506 | 537 | putative pectinesterase/pectinesterase inhibitor | 97.79 | |
| PLN02708 | 553 | Probable pectinesterase/pectinesterase inhibitor | 97.78 | |
| PLN02713 | 566 | Probable pectinesterase/pectinesterase inhibitor | 97.77 | |
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 97.77 | |
| PLN03043 | 538 | Probable pectinesterase/pectinesterase inhibitor; | 97.76 | |
| PRK10123 | 464 | wcaM putative colanic acid biosynthesis protein; P | 97.75 | |
| PLN02745 | 596 | Putative pectinesterase/pectinesterase inhibitor | 97.75 | |
| PLN02416 | 541 | probable pectinesterase/pectinesterase inhibitor | 97.73 | |
| PF00544 | 200 | Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe | 97.72 | |
| PLN02995 | 539 | Probable pectinesterase/pectinesterase inhibitor | 97.67 | |
| PLN02197 | 588 | pectinesterase | 97.66 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 97.56 | |
| PLN02916 | 502 | pectinesterase family protein | 97.54 | |
| PLN02314 | 586 | pectinesterase | 97.52 | |
| PLN02217 | 670 | probable pectinesterase/pectinesterase inhibitor | 97.51 | |
| PLN02468 | 565 | putative pectinesterase/pectinesterase inhibitor | 97.49 | |
| PLN02990 | 572 | Probable pectinesterase/pectinesterase inhibitor | 97.46 | |
| PLN02313 | 587 | Pectinesterase/pectinesterase inhibitor | 97.45 | |
| PF07602 | 246 | DUF1565: Protein of unknown function (DUF1565); In | 96.72 | |
| COG3420 | 408 | NosD Nitrous oxidase accessory protein [Inorganic | 96.63 | |
| PF12218 | 67 | End_N_terminal: N terminal extension of bacterioph | 96.6 | |
| COG4677 | 405 | PemB Pectin methylesterase [Carbohydrate transport | 96.52 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 96.16 | |
| PF12708 | 225 | Pectate_lyase_3: Pectate lyase superfamily protein | 95.93 | |
| TIGR03804 | 44 | para_beta_helix parallel beta-helix repeat (two co | 95.79 | |
| PRK10123 | 464 | wcaM putative colanic acid biosynthesis protein; P | 95.3 | |
| PF01696 | 386 | Adeno_E1B_55K: Adenovirus EB1 55K protein / large | 95.01 | |
| PF03211 | 215 | Pectate_lyase: Pectate lyase; InterPro: IPR004898 | 94.98 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 92.05 | |
| PLN02773 | 317 | pectinesterase | 90.22 | |
| PF14592 | 425 | Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF | 89.94 | |
| PF03211 | 215 | Pectate_lyase: Pectate lyase; InterPro: IPR004898 | 87.4 | |
| PLN02708 | 553 | Probable pectinesterase/pectinesterase inhibitor | 86.21 | |
| PLN02713 | 566 | Probable pectinesterase/pectinesterase inhibitor | 85.34 | |
| PF08480 | 198 | Disaggr_assoc: Disaggregatase related; InterPro: I | 84.98 | |
| PLN02698 | 497 | Probable pectinesterase/pectinesterase inhibitor | 84.8 | |
| PLN02506 | 537 | putative pectinesterase/pectinesterase inhibitor | 84.63 | |
| PLN03043 | 538 | Probable pectinesterase/pectinesterase inhibitor; | 84.53 | |
| KOG1777 | 625 | consensus Putative Zn-finger protein [General func | 84.47 | |
| PLN02416 | 541 | probable pectinesterase/pectinesterase inhibitor | 83.63 | |
| PLN02301 | 548 | pectinesterase/pectinesterase inhibitor | 83.5 | |
| PLN02201 | 520 | probable pectinesterase/pectinesterase inhibitor | 83.44 | |
| PLN02480 | 343 | Probable pectinesterase | 83.31 | |
| smart00722 | 146 | CASH Domain present in carbohydrate binding protei | 83.31 | |
| PLN02488 | 509 | probable pectinesterase/pectinesterase inhibitor | 83.16 | |
| PLN02468 | 565 | putative pectinesterase/pectinesterase inhibitor | 83.05 | |
| PLN02745 | 596 | Putative pectinesterase/pectinesterase inhibitor | 81.7 | |
| PLN02484 | 587 | probable pectinesterase/pectinesterase inhibitor | 81.67 | |
| PLN02217 | 670 | probable pectinesterase/pectinesterase inhibitor | 81.49 | |
| PLN02314 | 586 | pectinesterase | 81.41 | |
| PLN02313 | 587 | Pectinesterase/pectinesterase inhibitor | 80.69 | |
| PLN02990 | 572 | Probable pectinesterase/pectinesterase inhibitor | 80.26 |
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=368.13 Aligned_cols=242 Identities=29% Similarity=0.463 Sum_probs=202.6
Q ss_pred ecCCCceeEEeeeccccCCCCchhHHHHHHHH-HhCCCCCCCcEEEECCC-eEEEeeEEe----cCceEEEEcCCeeEEe
Q 038762 7 LSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAI-DACPPGNKPCQVRFPPG-EYLTATIRL----KSHVTLNIHEDATLLG 80 (268)
Q Consensus 7 ~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai-~~~~~~~~g~~v~ip~G-~Y~~~~l~l----~s~~~l~~~~ga~l~~ 80 (268)
.+...+++++|+||||++||.+|||+|||+|| ++|++ .++++|+||+| +|+++++.+ +++++|+++ ++|++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~-~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~--g~L~~ 136 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS-NGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIF--GTLSA 136 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhc-CCCcEEEECCCCeEEEeeeEecCccCCceEEEEE--EEEEe
Confidence 45567899999999999999999999999999 57887 77889999999 699999988 478999986 99999
Q ss_pred CCCCCCCCCCCCceEEEEEEeeeccEEEec--cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccE
Q 038762 81 GPRIEDYPEESSRWYVVLAENATDVGITGG--GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNV 158 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv 158 (268)
+.++.+|+.. ..|+ .+.+.+||+|+|. |+|||+|+.||....... ...+| ..+|+++.|.+|+|+
T Consensus 137 s~d~~~y~~~-~~wi--~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~-------~~~~~---~~rP~~i~f~~~~nv 203 (431)
T PLN02218 137 SQKRSDYKDI-SKWI--MFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRN-------KAKPC---TKAPTALTFYNSKSL 203 (431)
T ss_pred CCChhhcccc-ccCE--EEecCcEEEEECCCCcEEeCCchhhhhcccccC-------CcCcc---CcCCEEEEEEccccE
Confidence 9999888642 4554 5689999999996 999999999997532110 01112 248999999999999
Q ss_pred EEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEc
Q 038762 159 NVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATD 238 (268)
Q Consensus 159 ~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n 238 (268)
+|++++++|+|.|++++..|+|++|++++|.++.+++|+||||+.+|++|+|+||.|.+|||||++|+ +++||+|+|
T Consensus 204 ~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIks---gs~nI~I~n 280 (431)
T PLN02218 204 IVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES---GSQNVQIND 280 (431)
T ss_pred EEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecC---CCceEEEEe
Confidence 99999999999999999999999999999999988999999999999999999999999999999999 366777777
Q ss_pred eEEecCCccEEeeeee----eeeEEeEEEEeeEC
Q 038762 239 SWIRTKSSAIKLGSAS----WFDFKALVFDNITI 268 (268)
Q Consensus 239 ~~~~~~~~gi~ig~~~----~~~~~ni~~~ni~i 268 (268)
|++.. .|||+|||+. ...++||+|+|++|
T Consensus 281 ~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~ 313 (431)
T PLN02218 281 ITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL 313 (431)
T ss_pred EEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE
Confidence 77754 4567776643 23566666666653
|
|
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=367.95 Aligned_cols=239 Identities=26% Similarity=0.443 Sum_probs=195.8
Q ss_pred CceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCC-eEEEeeEEe----cCceEEEEcCCeeEEeCCCC
Q 038762 11 HIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPG-EYLTATIRL----KSHVTLNIHEDATLLGGPRI 84 (268)
Q Consensus 11 ~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G-~Y~~~~l~l----~s~~~l~~~~ga~l~~~~~~ 84 (268)
.+++++|+||||++||.+|||+|||+||+ +|++ .+|++|+||+| +|+++++.| +|+++|+++ ++|+++.++
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~-~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d~ 125 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSS-KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKDP 125 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhcc-CCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCCh
Confidence 45799999999999999999999999998 7887 78999999999 599999999 899999998 899999988
Q ss_pred CCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEE
Q 038762 85 EDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVR 164 (268)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~ 164 (268)
.+|+....+ .++++.+.+|++|+|.|+|||+|+.||...... ..... ...||+++.|.+|+|++|++++
T Consensus 126 ~~w~~~~~~-~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~-------~~~~~---~~~rP~~i~f~~~~nv~v~git 194 (443)
T PLN02793 126 DVWKGLNPR-KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKI-------NHTNP---CRHAPTAITFHKCKDLRVENLN 194 (443)
T ss_pred HHccCCCCc-eEEEEecCceEEEEeceEEECCCcccccccccc-------cCCCC---ccCCceEEEEEeeccEEEECeE
Confidence 888643222 345678999999999999999999999632110 00011 1247999999999999999999
Q ss_pred EeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 165 LREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 165 i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++|+|.|++++..|+|++|++++|.++..++|+||||+.+|++|+|+||.|.++||||++|+ +++||+|+||++..
T Consensus 195 l~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~---~s~nI~I~n~~c~~- 270 (443)
T PLN02793 195 VIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVG---NSSRIKIRNIACGP- 270 (443)
T ss_pred EEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecC---CcCCEEEEEeEEeC-
Confidence 99999999999999999999999999988999999999999999999999999999999997 34555555555544
Q ss_pred CccEEeeee----eeeeEEeEEEEeeE
Q 038762 245 SSAIKLGSA----SWFDFKALVFDNIT 267 (268)
Q Consensus 245 ~~gi~ig~~----~~~~~~ni~~~ni~ 267 (268)
.|||+|||+ ....++||+++|++
T Consensus 271 GhGisIGSlg~~~~~~~V~nV~v~n~~ 297 (443)
T PLN02793 271 GHGISIGSLGKSNSWSEVRDITVDGAF 297 (443)
T ss_pred CccEEEecccCcCCCCcEEEEEEEccE
Confidence 245555553 22345555555544
|
|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=361.34 Aligned_cols=237 Identities=23% Similarity=0.385 Sum_probs=193.0
Q ss_pred ecCCCceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCCeEEEeeEEe----cCceEEEEcCCeeEEeC
Q 038762 7 LSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLNIHEDATLLGG 81 (268)
Q Consensus 7 ~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G~Y~~~~l~l----~s~~~l~~~~ga~l~~~ 81 (268)
++...++++||+||||++||.+|+|+|||+||+ +|++ .+|++|+||+|+|+++++.| ||+++|+++ | +|+++
T Consensus 20 ~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~-~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~ 96 (394)
T PLN02155 20 VSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGS-ASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAP 96 (394)
T ss_pred ccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHccc-CCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECc
Confidence 556888999999999999999999999999995 8988 78999999999999999998 899999998 4 67776
Q ss_pred CCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEE
Q 038762 82 PRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVW 161 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 161 (268)
.+...|.. ...| +.+.+.+++.|.| |+|||+|+.||....... .| ..+|+++.|.+|+|++|+
T Consensus 97 ~d~~~~~~-~~~w--i~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~----------~~---~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 97 EDYRTFGN-SGYW--ILFNKVNRFSLVG-GTFDARANGFWSCRKSGQ----------NC---PPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cccccccc-ccee--EEEECcCCCEEEc-cEEecCceeEEEcccCCC----------CC---CCcccceeEEEeeeEEEE
Confidence 55444421 1234 5678999999999 999999999996322110 01 135789999999999999
Q ss_pred eEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEE
Q 038762 162 NVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWI 241 (268)
Q Consensus 162 ~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~ 241 (268)
+++++|+|.|++++..|++++|++++|.++..++|+||||+.+|++|+|+||.|.++||||++|++ ++||+|+||++
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g---s~nI~I~n~~c 236 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG---TRNFLITKLAC 236 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC---CceEEEEEEEE
Confidence 999999999999999999999999999999889999999999999999999999999999999983 45555555555
Q ss_pred ecCCccEEeeee----eeeeEEeEEEEeeE
Q 038762 242 RTKSSAIKLGSA----SWFDFKALVFDNIT 267 (268)
Q Consensus 242 ~~~~~gi~ig~~----~~~~~~ni~~~ni~ 267 (268)
.. .||++|||+ ....++||+++|++
T Consensus 237 ~~-GhGisIGS~g~~~~~~~V~nV~v~n~~ 265 (394)
T PLN02155 237 GP-GHGVSIGSLAKELNEDGVENVTVSSSV 265 (394)
T ss_pred EC-CceEEeccccccCCCCcEEEEEEEeeE
Confidence 54 345555553 23445555555554
|
|
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=356.19 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=180.2
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCCeEEEeeEEec------CceEEEEcCCeeEEeCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPGEYLTATIRLK------SHVTLNIHEDATLLGGP 82 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G~Y~~~~l~l~------s~~~l~~~~ga~l~~~~ 82 (268)
..++++||+||||++||.+|||+|||+||+ +|++ .++++|+||||+|+++++.|+ ++++| +|+++.
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~-~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~s~ 104 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAS-TGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKAAT 104 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhcc-CCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEcCC
Confidence 556899999999999999999999999996 6887 778899999999999999996 45555 788898
Q ss_pred CCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 83 RIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
++++|+.. ..|.. +..++||+|+|.|+|||+|+.||....... .. ....||+++.|.+|+|++|++
T Consensus 105 d~~~y~~~-~~~i~--~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~--------~~---~~~~rP~~i~f~~~~nv~i~g 170 (404)
T PLN02188 105 DLSRYGSG-NDWIE--FGWVNGLTLTGGGTFDGQGAAAWPFNKCPI--------RK---DCKLLPTSVKFVNMNNTVVRG 170 (404)
T ss_pred CHHHCCCc-cceEE--EeceeeEEEEeeEEEeCCCccccccccccc--------CC---CCCcCceEEEEEeeeeEEEeC
Confidence 98888642 34653 467899999999999999999996332110 00 113589999999999999999
Q ss_pred EEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEe
Q 038762 163 VRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIR 242 (268)
Q Consensus 163 v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~ 242 (268)
++++|+|.|++++..|++++|++++|.++.+++|+||||+++|++|+|+||.|.++||||++|++ ++||+|+|+++.
T Consensus 171 itl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg---~~nI~I~n~~c~ 247 (404)
T PLN02188 171 ITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG---NSQVTITRIRCG 247 (404)
T ss_pred eEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC---CccEEEEEEEEc
Confidence 99999999999999999999999999999889999999999999999999999999999999873 344444444443
Q ss_pred cCCccEEeee
Q 038762 243 TKSSAIKLGS 252 (268)
Q Consensus 243 ~~~~gi~ig~ 252 (268)
. .|||+|||
T Consensus 248 ~-ghGisiGS 256 (404)
T PLN02188 248 P-GHGISVGS 256 (404)
T ss_pred C-CCcEEeCC
Confidence 2 23444444
|
|
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=353.11 Aligned_cols=237 Identities=25% Similarity=0.426 Sum_probs=193.5
Q ss_pred eEEEeecCCCceeEEeeeccccCCCCchhHHHHHHHHHh-CCCCCCCcEEEECCCe-EEEeeEEecCc-----eEEEEcC
Q 038762 2 QLLLLLSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDA-CPPGNKPCQVRFPPGE-YLTATIRLKSH-----VTLNIHE 74 (268)
Q Consensus 2 ~~~~~~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~-~~~~~~g~~v~ip~G~-Y~~~~l~l~s~-----~~l~~~~ 74 (268)
++++|.-...++++||+||||++||.+|||+|||+||++ |++ .++++|+||+|+ |+++++.|+++ +++.++
T Consensus 11 ~~~~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~-~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~- 88 (456)
T PLN03003 11 SLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSG-TGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQML- 88 (456)
T ss_pred eeeeeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhc-cCCCEEEECCCceEEeeeeEeCCCccCcceeeccC-
Confidence 445566677888999999999999999999999999987 876 788999999994 88999999752 555555
Q ss_pred CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEec
Q 038762 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLG 154 (268)
Q Consensus 75 ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (268)
++|+++.. ..|......| +.+.++++++|+|.|+|||+|+.||... ..+|+++.|.+
T Consensus 89 -G~i~ap~~-~~w~~~~~~w--I~f~~~~~i~I~G~GtIDGqG~~wW~~~-------------------~~rP~~l~f~~ 145 (456)
T PLN03003 89 -GKLVAPSK-GNWKGDKDQW--ILFTDIEGLVIEGDGEINGQGSSWWEHK-------------------GSRPTALKFRS 145 (456)
T ss_pred -ceEecCcc-ccccCCCcce--EEEEcccceEEeccceEeCCchhhhhcc-------------------cCCceEEEEEe
Confidence 56766543 3453322334 5678999999999999999999999531 24799999999
Q ss_pred cccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecE
Q 038762 155 CRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNL 234 (268)
Q Consensus 155 ~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv 234 (268)
|+|++|++++++|+|.|++++..|++++|++++|.++..++|+||||+.+|++|+|+||.|.+|||||++|++ ++||
T Consensus 146 ~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg---s~NI 222 (456)
T PLN03003 146 CNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG---TSNI 222 (456)
T ss_pred cCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC---CccE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 5566
Q ss_pred EEEceEEecCCccEEeeeee----eeeEEeEEEEeeE
Q 038762 235 TATDSWIRTKSSAIKLGSAS----WFDFKALVFDNIT 267 (268)
Q Consensus 235 ~v~n~~~~~~~~gi~ig~~~----~~~~~ni~~~ni~ 267 (268)
+|+||++.. .|||+|||+. ...++||+++|++
T Consensus 223 ~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~ 258 (456)
T PLN03003 223 HISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCN 258 (456)
T ss_pred EEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeE
Confidence 666666654 3556666542 1345666666655
|
|
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=346.56 Aligned_cols=229 Identities=24% Similarity=0.398 Sum_probs=197.2
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHh-CCCCCC-CcEEEECCC-eEEEeeEEecC-----ceEEEEcCCeeEEe
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDA-CPPGNK-PCQVRFPPG-EYLTATIRLKS-----HVTLNIHEDATLLG 80 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~-~~~~~~-g~~v~ip~G-~Y~~~~l~l~s-----~~~l~~~~ga~l~~ 80 (268)
...++++||+||||++||.+|||+|||+||++ |.. .+ +++|+|||| +|+++++.|++ +++|+++ ++|++
T Consensus 41 ~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~-~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 41 LVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGG-EGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred cCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccC-CCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 34678999999999999999999999999985 543 22 379999999 79999999994 7999998 78999
Q ss_pred CCCCCCCCCC-CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEE
Q 038762 81 GPRIEDYPEE-SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVN 159 (268)
Q Consensus 81 ~~~~~~~~~~-~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~ 159 (268)
+.++..|+.. ...| +.+.+.+|++|+|.|+|||+|+.||. ++.|.+|+|++
T Consensus 118 ~~d~~~w~~~~~~~w--i~f~~v~nv~I~G~G~IDG~G~~ww~--------------------------~l~~~~~~nv~ 169 (409)
T PLN03010 118 PSNIVAWSNPKSQMW--ISFSTVSGLMIDGSGTIDGRGSSFWE--------------------------ALHISKCDNLT 169 (409)
T ss_pred cCChhhccCCCCcce--EEEecccccEEeeceEEeCCCccccc--------------------------eEEEEeecCeE
Confidence 9888888542 2334 45689999999999999999999983 48899999999
Q ss_pred EEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCC-----------
Q 038762 160 VWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT----------- 228 (268)
Q Consensus 160 I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~----------- 228 (268)
|++++++|+|.|++++..|++++|++++|.++..++|+||||+..|++|+|+||++.++||||++|++.
T Consensus 170 v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~ 249 (409)
T PLN03010 170 INGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCG 249 (409)
T ss_pred EeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeE
Confidence 999999999999999999999999999999988889999999999999999999999999999999842
Q ss_pred ----------------CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 229 ----------------GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 229 ----------------~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
..++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 250 ~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m 307 (409)
T PLN03010 250 PGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITL 307 (409)
T ss_pred CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEE
Confidence 1278888888888888888777553 245677777777765
|
|
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=308.30 Aligned_cols=249 Identities=33% Similarity=0.513 Sum_probs=206.8
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCC
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYP 88 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~ 88 (268)
.+....++|.+|||++||.+++++|||+||++|++ .+|++|+||||+|+.++|.|||+++|++++|++|+++.++.+|+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~-a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~ 155 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS-AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYP 155 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh-hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcc
Confidence 46667899999999999999999999999999997 78999999999999999999999999999999999999999998
Q ss_pred CC-----CCceEEE-----------------------EEEeeeccE-EEeccEEecCC----cccccchhhcccceeccc
Q 038762 89 EE-----SSRWYVV-----------------------LAENATDVG-ITGGGVVDGQA----MKFVVTKNEIKNVMVSWN 135 (268)
Q Consensus 89 ~~-----~~~~~~i-----------------------~~~~~~nv~-I~G~G~i~g~g----~~~~~~~~~~~~~~~~~~ 135 (268)
.. ...+..+ .....+|.. |.|.++++|++ ..||..... .-.++.
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~-~~~~i~-- 232 (542)
T COG5434 156 SFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGA-VETRIG-- 232 (542)
T ss_pred ccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccc-hhhccc--
Confidence 41 0111111 122344444 67777777754 113332220 000011
Q ss_pred ccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEE
Q 038762 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQI 215 (268)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i 215 (268)
....+|..+.+..|+||+++++++.+++.|+++++.|+|++++|++|.++... ++|||++.+|+|++|++|+|
T Consensus 233 ------~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~f 305 (542)
T COG5434 233 ------GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRF 305 (542)
T ss_pred ------ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEE
Confidence 11158999999999999999999999999999999999999999999987654 99999999999999999999
Q ss_pred ecCCceeeecCCC--------CCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 216 DTGDDAICPKTYT--------GPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 216 ~~gDD~i~i~s~~--------~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
.++||||++|++. ++++|++|+||+|...+.++.+|++.++.++||++||+.|
T Consensus 306 dtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~ 366 (542)
T COG5434 306 DTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVM 366 (542)
T ss_pred ecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeee
Confidence 9999999999974 4679999999999988888999999999999999999976
|
|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=272.41 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=161.2
Q ss_pred CCCcEEEECCCeEEEeeEEec----CceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCccc
Q 038762 45 NKPCQVRFPPGEYLTATIRLK----SHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKF 120 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~~~~l~l~----s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~ 120 (268)
.++++|+||+|+|+++++.|+ ++.++.++ +++.++.....++ .+.++.+.+++|++|+|.|+|||+|..|
T Consensus 4 ~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~----~~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 4 IGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP----NSALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp EEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-----SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred CcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC----ccEEEEEEceEEEEecCCceEcCchhhh
Confidence 456799999999999998887 67778887 5555553322222 1467788999999999999999999999
Q ss_pred ccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCcee
Q 038762 121 VVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI 200 (268)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi 200 (268)
|....... .....||+++.|..|+|++|++++++|+|.|++++..|+|++|++++|.++...+++|||
T Consensus 78 ~~~~~~~~------------~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGi 145 (326)
T PF00295_consen 78 WDGSGDAN------------NNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGI 145 (326)
T ss_dssp CSSCTTHC------------CSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SE
T ss_pred hccccccc------------cccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceE
Confidence 97543311 123468999999999999999999999999999999999999999999998878999999
Q ss_pred eecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeeeeee----eEEeEEEEeeEC
Q 038762 201 DIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWF----DFKALVFDNITI 268 (268)
Q Consensus 201 ~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~~~----~~~ni~~~ni~i 268 (268)
++.+|++|+|+||.+.++||||++|++ ..||+|+||++.. .||++||++... .++||+|+|++|
T Consensus 146 d~~~s~nv~I~n~~i~~gDD~Iaiks~---~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i 213 (326)
T PF00295_consen 146 DIDSSKNVTIENCFIDNGDDCIAIKSG---SGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI 213 (326)
T ss_dssp EEESEEEEEEESEEEESSSESEEESSE---ECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE
T ss_pred EEEeeeEEEEEEeecccccCccccccc---ccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe
Confidence 999999999999999999999999993 4488888888865 567888876443 578888888764
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A .... |
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=218.80 Aligned_cols=171 Identities=23% Similarity=0.280 Sum_probs=133.0
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCee---EEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDAT---LLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~---l~~~~~~~~ 86 (268)
...+.+++++|||+||+.+|+|+|||+||++|++ ++++|++|||+|+.+++.|+++++|.++++++ +.+.
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~--gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG~----- 105 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEAAR--AQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTGG----- 105 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc--CCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcCC-----
Confidence 5556799999999999999999999999999875 36799999999999999999999999999986 3221
Q ss_pred CCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEe
Q 038762 87 YPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLR 166 (268)
Q Consensus 87 ~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~ 166 (268)
..++.....++|+|+|. +|+|+|..|. .++.++++..|++++|++++|.
T Consensus 106 -------~~lIiai~A~nVTIsGL-tIdGsG~dl~-----------------------~rdAgI~v~~a~~v~Iedn~L~ 154 (455)
T TIGR03808 106 -------PSLLSSEGADGIGLSGL-TLDGGGIPLP-----------------------QRRGLIHCQGGRDVRITDCEIT 154 (455)
T ss_pred -------ceEEEEecCCCeEEEee-EEEeCCCccc-----------------------CCCCEEEEccCCceEEEeeEEE
Confidence 13455688999999996 9999997652 2567899999999999999999
Q ss_pred CCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceee
Q 038762 167 EPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAIC 223 (268)
Q Consensus 167 n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~ 223 (268)
++..||+.++.|+ ..|.+..|... ...+|+++.+++.+|++++++. .|++|.
T Consensus 155 gsg~FGI~L~~~~-~~I~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~ 207 (455)
T TIGR03808 155 GSGGNGIWLETVS-GDISGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIE 207 (455)
T ss_pred cCCcceEEEEcCc-ceEecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeE
Confidence 9998999999999 44444444432 2333555555555555555544 444443
|
Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor. |
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=178.62 Aligned_cols=208 Identities=26% Similarity=0.327 Sum_probs=141.7
Q ss_pred eEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEe-eEEecCceEEEEcCC-eeEEe-CCCCCCCCCC
Q 038762 14 IHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTA-TIRLKSHVTLNIHED-ATLLG-GPRIEDYPEE 90 (268)
Q Consensus 14 ~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~-~l~l~s~~~l~~~~g-a~l~~-~~~~~~~~~~ 90 (268)
++||+||||+|||.+|+|+|||+||+++++ .++++|+||||+|++. ++.++++++|+++++ .++.. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~-~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~-- 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA-AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS-- 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS-TTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC--
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc-CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc--
Confidence 479999999999999999999999966555 6799999999999986 499999999999876 23332 22211111
Q ss_pred CCceEEEEEE--------eeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 91 SSRWYVVLAE--------NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 91 ~~~~~~i~~~--------~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
.......+. ..+|++|.| ..... .....++.+..++++.|++
T Consensus 78 -~~~~~~~~~~~~~~~~~~i~nl~i~~------~~~~~-----------------------~~~~~~i~~~~~~~~~i~n 127 (225)
T PF12708_consen 78 -VVPGIGVFDSGNSNIGIQIRNLTIDG------NGIDP-----------------------NNNNNGIRFNSSQNVSISN 127 (225)
T ss_dssp -CEEEEEECCSCSCCEEEEEEEEEEEE------TCGCE------------------------SCEEEEEETTEEEEEEEE
T ss_pred -cccceeeeecCCCCceEEEEeeEEEc------ccccC-----------------------CCCceEEEEEeCCeEEEEe
Confidence 001111111 144444444 32221 0124579999999999999
Q ss_pred EEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEecCCceeeecCCCCCeecEEEEceEE
Q 038762 163 VRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWI 241 (268)
Q Consensus 163 v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~ 241 (268)
|+++++...++.+..++...+.+.... .++.+.+ ..++.+.++.+..+++++..++ +++.++||++
T Consensus 128 v~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~i~n~~~ 194 (225)
T PF12708_consen 128 VRIENSGGDGIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIILGN-----NNITISNNTF 194 (225)
T ss_dssp EEEES-SS-SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEECEE-----EEEEEECEEE
T ss_pred EEEEccCccEEEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEeec-----ceEEEEeEEE
Confidence 999999888888886665555433322 1355543 3467789999999888854433 8999999999
Q ss_pred ec-CCccEEeeeeeeeeEEeEEEEeeE
Q 038762 242 RT-KSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 242 ~~-~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
.. ...||.+-..+...++|++|+|+.
T Consensus 195 ~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 195 EGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred CCccceeEEEECCeEEEEEeEEEECCc
Confidence 97 678999988777899999999874
|
... |
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=143.56 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=126.6
Q ss_pred HHHHHHhCCCCCCCcEEEECCCeEEE-eeEEec-CceEEEEcCC--eeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEe
Q 038762 34 IQSAIDACPPGNKPCQVRFPPGEYLT-ATIRLK-SHVTLNIHED--ATLLGGPRIEDYPEESSRWYVVLAENATDVGITG 109 (268)
Q Consensus 34 iq~Ai~~~~~~~~g~~v~ip~G~Y~~-~~l~l~-s~~~l~~~~g--a~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G 109 (268)
||+|++++++ |.+|+||||+|.. +++.+. ++++|..++. ++|.+..... ... .+ ...+++|+|++
T Consensus 1 iQ~Ai~~A~~---GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~-----~~~--~i-~v~a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAAQP---GDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVG-----GAE--GL-LVTSDDVTLSD 69 (314)
T ss_pred CHhHHhhCCC---CCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCC-----CCc--eE-EEEeCCeEEEe
Confidence 6999999988 9999999999976 688886 8999998754 5666543210 011 12 23578888888
Q ss_pred ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEe-------CCCCcEEEEeeeecEE
Q 038762 110 GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLR-------EPAYWCLHIVRCDNTF 182 (268)
Q Consensus 110 ~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~-------n~~~~~i~~~~~~nv~ 182 (268)
- ++... ...++.+..|++++|+++++. ....+|+.+..|++++
T Consensus 70 l-tI~~~-----------------------------~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~ 119 (314)
T TIGR03805 70 L-AVENT-----------------------------KGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVL 119 (314)
T ss_pred e-EEEcC-----------------------------CCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEE
Confidence 3 33221 123677888999999999886 1346789999999999
Q ss_pred EEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEe
Q 038762 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL 250 (268)
Q Consensus 183 i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~i 250 (268)
|+++.+.. ....||.+..|++++|++|+++....||.+.. +.++.|++|++..+..|+.+
T Consensus 120 I~~n~i~g----~~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~----S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 120 VEDSYVRG----ASDAGIYVGQSQNIVVRNNVAEENVAGIEIEN----SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EECCEEEC----CCcccEEECCCCCeEEECCEEccCcceEEEEe----cCCcEEECCEEeccceeEEE
Confidence 99999986 23358999888899999999988777888865 58889999999888888877
|
Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown. |
| >PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-17 Score=144.09 Aligned_cols=194 Identities=20% Similarity=0.334 Sum_probs=119.5
Q ss_pred CcEEEECCCeEEEee---EEecCc-eEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCccccc
Q 038762 47 PCQVRFPPGEYLTAT---IRLKSH-VTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVV 122 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~---l~l~s~-~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~ 122 (268)
..+|||+||+|.++. +.|+++ .++++++||.++++ +.+ ....+|+.|.|.|++.|....|-+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA-------------f~~-~~~~~nv~i~G~GVLSGe~Yvy~A 297 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA-------------FEY-TDTQQNVKITGRGVLSGEQYVYEA 297 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES--------------EEE----SSEEEEESSSEEE-TTS-TTB
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE-------------EEE-ccCCceEEEEeeEEEcCcceeEec
Confidence 469999999998875 899988 59999999999984 222 268999999999999998776633
Q ss_pred chhhcccceecccccCCCCCCCCCceEEE---EeccccEEEEeEEEeCCCCcEEEEeeee----cEEEEeEEEEcCCCCC
Q 038762 123 TKNEIKNVMVSWNHTGACSGDECRPRLVG---FLGCRNVNVWNVRLREPAYWCLHIVRCD----NTFIRDMSIYGDFNTP 195 (268)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----nv~i~~~~i~~~~~~~ 195 (268)
....... +....-.|.. ..-+++. ...+.++.+++++|.++|.|.+.+...+ +.+|+|.++-..+ -.
T Consensus 298 ~~~e~y~---~~s~A~~~~~--~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~ 371 (582)
T PF03718_consen 298 DTEESYL---HLSGAVKCHR--ESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YF 371 (582)
T ss_dssp BCCCTTS---B-SSC---TT--TB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CT
T ss_pred cCCCCcc---ccccccccch--hhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-Ee
Confidence 2221100 0000000110 1112343 4556799999999999999999999655 4899999998654 36
Q ss_pred CCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc--EEeeeeeeeeEEeEEEEeeEC
Q 038762 196 NNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA--IKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 196 ~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g--i~ig~~~~~~~~ni~~~ni~i 268 (268)
++|||.+. ++-+|+||++...||+|.+.- +++.++||+++...+| +.+|+-.. .++|+.|+|++|
T Consensus 372 qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh-----S~v~v~~~ViWk~~Ngpiiq~GW~pr-~isnv~veni~I 438 (582)
T PF03718_consen 372 QTDGIELY--PNSTIRDCFIHVNDDAIKLYH-----SNVSVSNTVIWKNENGPIIQWGWTPR-NISNVSVENIDI 438 (582)
T ss_dssp T----B----TT-EEEEEEEEESS-SEE--S-----TTEEEEEEEEEE-SSS-SEE--CS----EEEEEEEEEEE
T ss_pred ccCCcccc--CCCeeeeeEEEecCchhheee-----cCcceeeeEEEecCCCCeEEeecccc-ccCceEEeeeEE
Confidence 89999985 577889999999999996653 8999999999987777 67788643 588999999875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X. |
| >PLN02793 Probable polygalacturonase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=133.85 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=126.2
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC----------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceeccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE----------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWN 135 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~----------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~ 135 (268)
+++++.+. ++|.+.+ ..|... ..+..++.+.+++|++|+|--..+.
T Consensus 143 ~ni~ItG~--G~IDG~G--~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS-------------------- 198 (443)
T PLN02793 143 NHLTVEGG--GTVNGMG--HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS-------------------- 198 (443)
T ss_pred ceEEEEec--eEEECCC--cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC--------------------
Confidence 45666664 7887744 233211 0123467889999999999322221
Q ss_pred ccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEE
Q 038762 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVI 210 (268)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I 210 (268)
....+++.+|+|++|+++++.++. ..||++..|+||+|+|+.|.. ..|.|-+. +|++|+|
T Consensus 199 ----------p~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I 263 (443)
T PLN02793 199 ----------QQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKI 263 (443)
T ss_pred ----------CCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEE
Confidence 133688999999999999998742 459999999999999999997 78999996 7889999
Q ss_pred EeeEEecCCceeeecCC-----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 211 TRVQIDTGDDAICPKTY-----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 211 ~n~~i~~gDD~i~i~s~-----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
+||....|. +|+++|. .+.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 264 ~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m 327 (443)
T PLN02793 264 RNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFM 327 (443)
T ss_pred EEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEE
Confidence 999997775 6999984 25799999999999999999999663 345788888888876
|
|
| >PLN03003 Probable polygalacturonase At3g15720 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=133.63 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=126.1
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCC-CCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPE-ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDE 144 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~-~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (268)
.++++.+. ++|.+.+ ..|.. ...+..++.+.+++|+.|+|- ++. ..
T Consensus 113 ~~i~I~G~--GtIDGqG--~~wW~~~~~rP~~l~f~~~~nv~I~gi-tl~--NS-------------------------- 159 (456)
T PLN03003 113 EGLVIEGD--GEINGQG--SSWWEHKGSRPTALKFRSCNNLRLSGL-THL--DS-------------------------- 159 (456)
T ss_pred cceEEecc--ceEeCCc--hhhhhcccCCceEEEEEecCCcEEeCe-EEe--cC--------------------------
Confidence 36666664 6777644 23332 122335778899999999993 221 11
Q ss_pred CCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCC
Q 038762 145 CRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGD 219 (268)
Q Consensus 145 ~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gD 219 (268)
....+++.+|+|++|+++++.++. ..|+++..|+||+|+|+.|.. ..|.|-+. +|+||+|+||....+.
T Consensus 160 -p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH 233 (456)
T PLN03003 160 -PMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH 233 (456)
T ss_pred -CcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC
Confidence 234699999999999999998642 449999999999999999997 78999997 6779999999997765
Q ss_pred ceeeecCCC-----CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 220 DAICPKTYT-----GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 220 D~i~i~s~~-----~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
+|+++|.. ..++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 234 -GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 234 -GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred -CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 79999854 3599999999999999999999653 335788888888876
|
|
| >PLN02218 polygalacturonase ADPG | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=134.33 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=125.3
Q ss_pred ceEEEEcCCeeEEeCCCCCCCCCC----------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 67 HVTLNIHEDATLLGGPRIEDYPEE----------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 67 ~~~l~~~~ga~l~~~~~~~~~~~~----------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
++++.+...++|.+.+ ..|... ..+..++.+.+++|++|+|- ++.. .
T Consensus 157 ni~I~G~~~GtIDG~G--~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gi-tl~n--S------------------ 213 (431)
T PLN02218 157 NLSVDGGSTGVVDGNG--ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNL-RVRN--A------------------ 213 (431)
T ss_pred EEEEECCCCcEEeCCc--hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCe-EEEc--C------------------
Confidence 5555443227787654 233321 01234678899999999993 3221 1
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCC----CCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEE
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREP----AYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVIT 211 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~ 211 (268)
..+.+++.+|+||+|+|+++.++ -..||++..|+||+|+|+.|.. ..|.|-+. ++++|+|+
T Consensus 214 ---------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~ 279 (431)
T PLN02218 214 ---------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQIN 279 (431)
T ss_pred ---------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEE
Confidence 23469999999999999999863 2449999999999999999997 78999997 67899999
Q ss_pred eeEEecCCceeeecCCC-----CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTYT-----GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~~-----~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
||.+..+. +|+++|.. +.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 280 n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m 342 (431)
T PLN02218 280 DITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQM 342 (431)
T ss_pred eEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEE
Confidence 99997665 69999854 4699999999999999999988664 346888888888876
|
|
| >PLN02155 polygalacturonase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-15 Score=131.21 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=114.6
Q ss_pred EEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----Cc
Q 038762 96 VVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YW 171 (268)
Q Consensus 96 ~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~ 171 (268)
++.+.+++++.|+|- ++. .. ....+++.+|+|++|+++++.++. ..
T Consensus 147 ~i~~~~~~nv~i~gi-tl~--nS---------------------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtD 196 (394)
T PLN02155 147 SISFNSAKDVIISGV-KSM--NS---------------------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTD 196 (394)
T ss_pred ceeEEEeeeEEEECe-EEE--cC---------------------------CCeEEEEECeeeEEEEEEEEECCCCCCCCC
Confidence 577889999999982 221 11 234799999999999999998743 35
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCCceeeecCC-----CCCeecEEEEceEEecCC
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGDDAICPKTY-----TGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gDD~i~i~s~-----~~~~~nv~v~n~~~~~~~ 245 (268)
|+.+..|+||+|+|+.|.. ..|.|-+. +|++|+|+||.+..|. +++++|. .+.++||+|+||++.++.
T Consensus 197 Gidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~ 270 (394)
T PLN02155 197 GFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQ 270 (394)
T ss_pred ccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCC
Confidence 9999999999999999997 78999987 5779999999998765 6999994 467999999999999999
Q ss_pred ccEEeee---eeeeeEEeEEEEeeEC
Q 038762 246 SAIKLGS---ASWFDFKALVFDNITI 268 (268)
Q Consensus 246 ~gi~ig~---~~~~~~~ni~~~ni~i 268 (268)
+|++|.+ ..++.++||+|+|++|
T Consensus 271 ~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 271 NGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred cEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 9999966 2467899999999886
|
|
| >PLN02188 polygalacturonase/glycoside hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-14 Score=126.29 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=125.4
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCC-C--------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPE-E--------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~-~--------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
.++++.+ +++|.+.+. .|.. . ..+..++.+..++|+.|+|- ++. ..
T Consensus 122 ~ni~I~G--~G~IDG~G~--~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi-tl~--nS------------------ 176 (404)
T PLN02188 122 NGLTLTG--GGTFDGQGA--AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI-TSV--NS------------------ 176 (404)
T ss_pred eeEEEEe--eEEEeCCCc--ccccccccccCCCCCcCceEEEEEeeeeEEEeCe-EEE--cC------------------
Confidence 4666666 478887553 2321 1 11234677899999999993 222 11
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEE
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVIT 211 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~ 211 (268)
....+++.+|+|++|+++++.++. ..|+++..|+|++|+|+.|.. ..|.|-+. ++++|+|+
T Consensus 177 ---------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~ 242 (404)
T PLN02188 177 ---------KFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTIT 242 (404)
T ss_pred ---------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEE
Confidence 234699999999999999998632 449999999999999999997 78999996 67799999
Q ss_pred eeEEecCCceeeecC----C-CCCeecEEEEceEEecCCccEEeeee----eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKT----Y-TGPLYNLTATDSWIRTKSSAIKLGSA----SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s----~-~~~~~nv~v~n~~~~~~~~gi~ig~~----~~~~~~ni~~~ni~i 268 (268)
|+....+. +|+++| . .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 243 n~~c~~gh-GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m 307 (404)
T PLN02188 243 RIRCGPGH-GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVM 307 (404)
T ss_pred EEEEcCCC-cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEe
Confidence 99997764 699988 2 36799999999999999999998552 346788888888876
|
|
| >PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=126.06 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=120.4
Q ss_pred EEEcCCeeEEeCCCCCCCCCCC--------CceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCC
Q 038762 70 LNIHEDATLLGGPRIEDYPEES--------SRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACS 141 (268)
Q Consensus 70 l~~~~ga~l~~~~~~~~~~~~~--------~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 141 (268)
+.+.+.++|.+.+. .|.... .+..++.+..+++++|+|- ++. ..
T Consensus 62 i~i~G~G~IDG~G~--~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i-~~~--ns----------------------- 113 (326)
T PF00295_consen 62 ITITGKGTIDGNGQ--AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGI-TIR--NS----------------------- 113 (326)
T ss_dssp EECTTSSEEE--GG--GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESE-EEE--S------------------------
T ss_pred EEecCCceEcCchh--hhhccccccccccccccceeeeeeecceEEEee-Eec--CC-----------------------
Confidence 44444477777443 232211 2235677899999999993 221 11
Q ss_pred CCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-cEEEEeeEEe
Q 038762 142 GDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-NTVITRVQID 216 (268)
Q Consensus 142 ~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-~v~I~n~~i~ 216 (268)
..+.+++.+|+|++|+++++.++. ..|+.+..|+|++|+|+.|.+ ..|.|.+.+.+ +|+|+||.+.
T Consensus 114 ----p~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~ 184 (326)
T PF00295_consen 114 ----PFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCS 184 (326)
T ss_dssp ----SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEE
T ss_pred ----CeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEe
Confidence 223588999999999999998754 349999999999999999997 79999998666 9999999998
Q ss_pred cCCceeeecCCCC-----CeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 217 TGDDAICPKTYTG-----PLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 217 ~gDD~i~i~s~~~-----~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
.+. +++++|... .++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 185 ~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~ 242 (326)
T PF00295_consen 185 GGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITM 242 (326)
T ss_dssp SSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEE
T ss_pred ccc-cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEe
Confidence 754 599988543 389999999999999999988663 456888888888875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A .... |
| >PLN03010 polygalacturonase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=123.90 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=120.3
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDEC 145 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (268)
+++++.+. ++|.+.+ ..| |.++.+.+++|++|+|- ++.. .
T Consensus 139 ~nv~I~G~--G~IDG~G--~~w------w~~l~~~~~~nv~v~gi-tl~n--s--------------------------- 178 (409)
T PLN03010 139 SGLMIDGS--GTIDGRG--SSF------WEALHISKCDNLTINGI-TSID--S--------------------------- 178 (409)
T ss_pred cccEEeec--eEEeCCC--ccc------cceEEEEeecCeEEeee-EEEc--C---------------------------
Confidence 46666664 6777643 223 34677899999999993 2211 1
Q ss_pred CceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCC----C-------------CCceeeecC
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNT----P-------------NNDGIDIED 204 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~----~-------------~~DGi~~~~ 204 (268)
....+++.+|+|++|+++++.++. ..|+++..|++|+|+|+.|.+.++. . .+.||.+.+
T Consensus 179 p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS 258 (409)
T PLN03010 179 PKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGS 258 (409)
T ss_pred CceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEcc
Confidence 234688999999999999998743 3489999999999999999864430 0 223444432
Q ss_pred ---------cccEEEEeeEEecCCceeeecCCC---CCeecEEEEceEEecCCccEEeeeeee------------eeEEe
Q 038762 205 ---------SNNTVITRVQIDTGDDAICPKTYT---GPLYNLTATDSWIRTKSSAIKLGSASW------------FDFKA 260 (268)
Q Consensus 205 ---------~~~v~I~n~~i~~gDD~i~i~s~~---~~~~nv~v~n~~~~~~~~gi~ig~~~~------------~~~~n 260 (268)
-+||+|+||+|...+.++.+|+.. +.++||+++|.++.+..++|.|-..+. ..|+|
T Consensus 259 ~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 259 LGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred CCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 368999999999988999999853 479999999999999989988744221 27899
Q ss_pred EEEEeeE
Q 038762 261 LVFDNIT 267 (268)
Q Consensus 261 i~~~ni~ 267 (268)
|+|+|++
T Consensus 339 i~~~ni~ 345 (409)
T PLN03010 339 VKYVGFR 345 (409)
T ss_pred EEEEeeE
Confidence 9999986
|
|
| >COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=116.04 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=113.5
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC---Cc
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA---YW 171 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---~~ 171 (268)
..+.+..|+||.+.|..+... .-+.+++..|+|++++|+++.+.. ..
T Consensus 239 ~~~~l~~c~NV~~~g~~i~ns------------------------------~~~~~h~~~~~nl~~~nl~I~~~~~~NtD 288 (542)
T COG5434 239 RTVVLKGCRNVLLEGLNIKNS------------------------------PLWTVHPVDCDNLTFRNLTIDANRFDNTD 288 (542)
T ss_pred ceEEEeccceEEEeeeEecCC------------------------------CcEEEeeecccCceecceEEECCCCCCCC
Confidence 355678999999988433221 124799999999999999998643 45
Q ss_pred EEEEeeeecEEEEeEEEEcCCC------CCCCce-eeecCcccEEEEeeEEecCCceeeecCC-CCCeecEEEEceEEec
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFN------TPNNDG-IDIEDSNNTVITRVQIDTGDDAICPKTY-TGPLYNLTATDSWIRT 243 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~------~~~~DG-i~~~~~~~v~I~n~~i~~gDD~i~i~s~-~~~~~nv~v~n~~~~~ 243 (268)
|+.+..|+|+.|++|+|..-.+ +...++ =....++++.|+||.|..+.-++.++++ .+.++||++|||.+.+
T Consensus 289 G~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 289 GFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDN 368 (542)
T ss_pred ccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeecc
Confidence 9999999999999999987322 112221 1223478899999999999989999886 4789999999999999
Q ss_pred CCccEEeee--eeeeeEEeEEEEeeEC
Q 038762 244 KSSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 244 ~~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
+..|++|.+ ..+++++||+|++++|
T Consensus 369 ~d~GLRikt~~~~gG~v~nI~~~~~~~ 395 (542)
T COG5434 369 TDRGLRIKTNDGRGGGVRNIVFEDNKM 395 (542)
T ss_pred CcceeeeeeecccceeEEEEEEecccc
Confidence 999999976 4567999999999875
|
|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-08 Score=79.79 Aligned_cols=163 Identities=23% Similarity=0.320 Sum_probs=106.5
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEe-----eEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeec
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTA-----TIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATD 104 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~-----~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~n 104 (268)
--+-|++|++.+++ |.+|++-||+|... +|.++++++|.+++-. ++ ...
T Consensus 14 P~~Ti~~A~~~a~~---g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~--kG---------------------~~~ 67 (246)
T PF07602_consen 14 PFKTITKALQAAQP---GDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESN--KG---------------------QID 67 (246)
T ss_pred CHHHHHHHHHhCCC---CCEEEECCceeccccCCcccEEecCCeEEeecccC--CC---------------------cce
Confidence 45689999999988 88999999999532 4677777777765211 00 011
Q ss_pred cEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC---CCcEEEEeee
Q 038762 105 VGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP---AYWCLHIVRC 178 (268)
Q Consensus 105 v~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~ 178 (268)
+.+.|.+ +|+|.+... ..+.+.+....+..|+++++.|+ .+.++.+..+
T Consensus 68 il~~g~~~~~~I~g~~~~~-------------------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess 122 (246)
T PF07602_consen 68 ILITGGGTGPTISGGGPDL-------------------------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS 122 (246)
T ss_pred EEecCCceEEeEeccCccc-------------------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC
Confidence 1122211 133322210 12345566678889999999987 5668888777
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecCcc------cEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEE
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIEDSN------NTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~~~------~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
+.+|+++++.. ...+||.+.+.. ++.|++..+....-+|++.....++.| .|+||.++.+..||.
T Consensus 123 -~~tI~Nntf~~----~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n-~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 123 -SPTIANNTFTN----NGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAPVEN-KIENNIIENNNIGIV 193 (246)
T ss_pred -CcEEEeeEEEC----CccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCCccc-eeeccEEEeCCcCeE
Confidence 99999999987 357888775442 456666666665557777655445443 568888887767875
|
Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT). |
| >TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-08 Score=85.23 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=93.1
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCC---CCCCceeeecCcccEEEEeeEEec-CCceeee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDGIDIEDSNNTVITRVQIDT-GDDAICP 224 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i 224 (268)
.+. ..+++++|++++++++..+++.+..|++++|+++++..... ....+||.++.|++++|++|.++. .|++|.+
T Consensus 57 ~i~-v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 57 GLL-VTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred eEE-EEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 443 35899999999999999999999999999999999973221 236789999999999999999998 6668988
Q ss_pred cCCCCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEee
Q 038762 225 KTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+. ++++.|++|+++....||.+-......++|.++.+.
T Consensus 136 ~~----s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N 173 (314)
T TIGR03805 136 GQ----SQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNN 173 (314)
T ss_pred CC----CCCeEEECCEEccCcceEEEEecCCcEEECCEEecc
Confidence 76 799999999999988899886555556666555553
|
Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown. |
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=82.46 Aligned_cols=108 Identities=23% Similarity=0.334 Sum_probs=69.5
Q ss_pred EEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCC-----CCcee------eecCcccEEEEeeEEecCC
Q 038762 151 GFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP-----NNDGI------DIEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~-----~~DGi------~~~~~~~v~I~n~~i~~gD 219 (268)
.|++|+++.++|++|-+++-. +..|++++++|+.+.+..-.. .-|++ -|++|+||.|+|+++.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 367899999999999888653 567888888888885432111 23333 3456999999999999887
Q ss_pred ceeeecCCCCCeecEEEEceEEecC-----CccEEe------eeeeeeeEEeEEEEeeEC
Q 038762 220 DAICPKTYTGPLYNLTATDSWIRTK-----SSAIKL------GSASWFDFKALVFDNITI 268 (268)
Q Consensus 220 D~i~i~s~~~~~~nv~v~n~~~~~~-----~~gi~i------g~~~~~~~~ni~~~ni~i 268 (268)
--. .++||+|+|+++.+- ...+.+ |...--+.+|++++||+|
T Consensus 170 AFW-------n~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLCY~~~L~l~nC~~ 222 (277)
T PF12541_consen 170 AFW-------NCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLCYCDNLVLENCTM 222 (277)
T ss_pred ccc-------cCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccEeecceEEeCcEe
Confidence 333 267777777776431 111111 122333667777777764
|
Proteins in this family are typically between 281 and 297 amino acids in length. |
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-07 Score=71.66 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=40.5
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEec-CCceeeecC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
++.+....++.++++++.+.. .++.+..+..++|+++.+.. ....||.+.. +++++|++|+|.. +..++.+..
T Consensus 47 gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~----~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 47 GIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIEN----NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp SEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEEC----SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEE
T ss_pred EEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEc----CCCccEEEeccCCCEEEEeEEEEeCcceeEEEEC
Confidence 344444555555555555544 45555555555555555554 1222555554 5555555555554 334444443
Q ss_pred CCCCeecEEEEceEEecCC-ccEEe
Q 038762 227 YTGPLYNLTATDSWIRTKS-SAIKL 250 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~~-~gi~i 250 (268)
.. ..++.|++|++.... .|+.+
T Consensus 122 ~~--~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 122 GS--SPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp CC----S-EEECEEEECESSEEEE-
T ss_pred CC--CCeEEEEEEEEEeCcceeEEE
Confidence 11 235555666655432 44444
|
|
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-07 Score=77.93 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=116.5
Q ss_pred CCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccch
Q 038762 45 NKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTK 124 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~ 124 (268)
++|..+.+. |+| .+.+.+...+||+.++||+|.+.... ... -...+++.++| -+..+.|......
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~G--------~~v---tv~aP~~~v~G-l~vr~sg~~lp~m- 96 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGKG--------SYV---TVAAPDVIVEG-LTVRGSGRSLPAM- 96 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCcc--------cEE---EEeCCCceeee-EEEecCCCCcccc-
Confidence 346677777 777 56778888899999999999885432 111 24678888888 4555555542210
Q ss_pred hhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCC---CCCCceee
Q 038762 125 NEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDGID 201 (268)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DGi~ 201 (268)
..-.+..+......|++..+... .+|+.+..+.++.+++.+|....+ .-.++||+
T Consensus 97 ---------------------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~ 154 (408)
T COG3420 97 ---------------------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIY 154 (408)
T ss_pred ---------------------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceE
Confidence 11234555667788888888877 459999999999999999987554 23689999
Q ss_pred ecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc
Q 038762 202 IEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 202 ~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g 247 (268)
++++++.+|..+.++-+.|||-.+. +++..|+++.|+....|
T Consensus 155 vyNa~~a~V~~ndisy~rDgIy~~~----S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 155 VYNAPGALVVGNDISYGRDGIYSDT----SQHNVFKGNRFRDLRYG 196 (408)
T ss_pred EEcCCCcEEEcCccccccceEEEcc----cccceecccchhheeee
Confidence 9999999999999999999998877 44455555555443333
|
|
| >TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-07 Score=79.76 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=67.0
Q ss_pred EEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCC-CceeeecCcccEEEEeeEEec-CCc
Q 038762 149 LVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPN-NDGIDIEDSNNTVITRVQIDT-GDD 220 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~-~DGi~~~~~~~v~I~n~~i~~-gDD 220 (268)
.+.-...++++|++++|.++. ..+|++..|++++|+++++.. + .-||.++.|+ ..|+++.+.. .+.
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~g-----sg~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITG-----SGGNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEc-----CCcceEEEEcCc-ceEecceEeccccc
Confidence 455677899999999998754 448999999999999999997 4 5899999998 8888888876 777
Q ss_pred eeeecCCCCCeecEEEEceEEec
Q 038762 221 AICPKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 221 ~i~i~s~~~~~~nv~v~n~~~~~ 243 (268)
.|.+.. +++..|++|++.+
T Consensus 182 ~I~lw~----S~g~~V~~N~I~g 200 (455)
T TIGR03808 182 AIVSFD----ALGLIVARNTIIG 200 (455)
T ss_pred eEEEec----cCCCEEECCEEEc
Confidence 777654 4555555555553
|
Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor. |
| >PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=73.19 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=73.1
Q ss_pred CceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeee
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICP 224 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i 224 (268)
...++.+..+..++|++++|.+ ...++.+....+++++++.+.. ...|+.+..+..+.|++|.+.. ++.+|.+
T Consensus 22 ~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~-----~~~~i~~~~~~~~~i~~~~i~~~~~~gi~~ 95 (158)
T PF13229_consen 22 GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISD-----NGSGIYVSGSSNITIENNRIENNGDYGIYI 95 (158)
T ss_dssp SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-
T ss_pred CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEE-----ccceEEEEecCCceecCcEEEcCCCccEEE
Confidence 3456777777777777888877 5567777777778888888875 2378888888888888888887 5668877
Q ss_pred cCCCCCeecEEEEceEEecCC-ccEEeeeee--eeeEEeEEEEee
Q 038762 225 KTYTGPLYNLTATDSWIRTKS-SAIKLGSAS--WFDFKALVFDNI 266 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~~-~gi~ig~~~--~~~~~ni~~~ni 266 (268)
.. ..++++|++|+|.... .|+.+.... ...+++.++.+.
T Consensus 96 ~~---~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 96 SN---SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNN 137 (158)
T ss_dssp TC---EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECE
T ss_pred ec---cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeC
Confidence 64 4678999999999765 677776554 556677766653
|
|
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=72.82 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=84.5
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~ 227 (268)
.++.+..+++++|++.++.+.. .|+.+..+.+.+|++..+.. +..||.+..+.+.+|+++.+.+...+|.+..
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~~~~GI~l~~- 130 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISN-----NGYGIYLYGSSNNTISNNTISNNGYGIYLSS- 130 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecC-----CCceEEEeeCCceEEECcEEeCCCEEEEEEe-
Confidence 4688899999999999999886 78999999888999999986 4459999888888999999988888888876
Q ss_pred CCCeecEEEEceEEecC-CccEE-eeeeeeeeEEeEEE
Q 038762 228 TGPLYNLTATDSWIRTK-SSAIK-LGSASWFDFKALVF 263 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~-~~gi~-ig~~~~~~~~ni~~ 263 (268)
+.+.+|++|+|... ..||. +.......|.+..|
T Consensus 131 ---s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 131 ---SSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred ---CCCCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 48888999999887 77887 43333344444444
|
To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme []. |
| >PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=73.78 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=93.5
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~ 227 (268)
.++.+..+.+++|++.++.+. .+|+.+..|.+++|+++.+.. +..||.+..+.+.+|+++.+.....+|.+..
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~- 108 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG- 108 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-
Confidence 357889999999999999998 679999999999999999997 5599999988877999999998656998876
Q ss_pred CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEee
Q 038762 228 TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+.+.+|++|++.....||.+.......+++.+|.+.
T Consensus 109 ---s~~~~I~~N~i~~~~~GI~l~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 109 ---SSNNTISNNTISNNGYGIYLSSSSNNTITGNTISNN 144 (236)
T ss_pred ---CCceEEECcEEeCCCEEEEEEeCCCCEEECeEEeCC
Confidence 577899999999888899887666667777776654
|
To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme []. |
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-06 Score=72.37 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEE
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVL 98 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~ 98 (268)
||. .+-..||+||+++++.. ..-+|+|.||+|. +.+.++ .+++|.+++ .++|........- ... ..+
T Consensus 55 ~G~-g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~---~~s-aTv- 127 (343)
T PLN02480 55 NGK-GDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDN---AAS-ATF- 127 (343)
T ss_pred CCC-CCcccHHHHHhhCccCCCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEccccccCC---CCc-eEE-
Confidence 443 46889999999998711 1124889999996 666663 458888775 4555553321110 001 111
Q ss_pred EEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEE-eccccEEEEeEEEeCCCCcEEEEee
Q 038762 99 AENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGF-LGCRNVNVWNVRLREPAYWCLHIVR 177 (268)
Q Consensus 99 ~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~nv~I~~v~i~n~~~~~i~~~~ 177 (268)
....+++++++- +|... +... . ......+++.+ ...+.+.+++|+|..-. ..+. ..
T Consensus 128 tV~a~~f~a~nL-Tf~Nt---a~~g--~---------------~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-DTLy-~~ 184 (343)
T PLN02480 128 TVEAPHFVAFGI-SIRND---APTG--M---------------AFTSENQSVAAFVGADKVAFYHCAFYSTH-NTLF-DY 184 (343)
T ss_pred EEECCCEEEEee-EEEec---CCCC--C---------------CCCCCCceEEEEecCCcEEEEeeEEeccc-ceeE-eC
Confidence 123344444441 22211 0000 0 00011233333 45777888888886542 2332 22
Q ss_pred eecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc------e-eeecC-CCCCeecEEEEceEEecCCccEE
Q 038762 178 CDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD------A-ICPKT-YTGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 178 ~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD------~-i~i~s-~~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
.-...+++|.|.. ..|-| .+.-...+++|++..-.+ + |.--+ .........|.||++.+. ..+.
T Consensus 185 ~gR~yf~~C~IeG-----~VDFI--FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~-g~~y 256 (343)
T PLN02480 185 KGRHYYHSCYIQG-----SIDFI--FGRGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI-GEVY 256 (343)
T ss_pred CCCEEEEeCEEEe-----eeeEE--ccceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc-Ccee
Confidence 3346777888876 33322 244478889999876321 1 21111 112346799999999863 2355
Q ss_pred eeeeeeeeEEeEEEEeeE
Q 038762 250 LGSASWFDFKALVFDNIT 267 (268)
Q Consensus 250 ig~~~~~~~~ni~~~ni~ 267 (268)
+|--+. .+..+.|.++.
T Consensus 257 LGRPW~-~ya~vVf~~t~ 273 (343)
T PLN02480 257 LGRAKG-AYSRVIFAKTY 273 (343)
T ss_pred eecCCC-CcceEEEEecc
Confidence 554332 24455555443
|
|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-06 Score=73.61 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEec------CceEEEEcCC--eeEEeCCCCCCCCCCCCceEEEEEEe
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK------SHVTLNIHED--ATLLGGPRIEDYPEESSRWYVVLAEN 101 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~------s~~~l~~~~g--a~l~~~~~~~~~~~~~~~~~~i~~~~ 101 (268)
+.++||+||++|++ |.+|+++.|+|.-..+.++ .+++|.-+.. ++|.+.. .+. ..
T Consensus 3 s~~~lq~Ai~~a~p---GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s-------------~l~-i~ 65 (425)
T PF14592_consen 3 SVAELQSAIDNAKP---GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAENPGKVVITGES-------------NLR-IS 65 (425)
T ss_dssp SHHHHHHHHHH--T---T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEES--------------EEE-E-
T ss_pred CHHHHHHHHHhCCC---CCEEEECCceeecceEEEEecccCCCCEEEEecCCCeEEEecce-------------eEE-EE
Confidence 46899999999988 9999999999963234332 3466655432 2222210 011 12
Q ss_pred eeccEEEeccEE-ecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC--C------CcE
Q 038762 102 ATDVGITGGGVV-DGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP--A------YWC 172 (268)
Q Consensus 102 ~~nv~I~G~G~i-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~--~------~~~ 172 (268)
.+.++|+| -.+ +|... ....+. . +. ......+.+.++.++.|.+- + .|-
T Consensus 66 G~yl~v~G-L~F~ng~~~---------~~~vi~----------f-r~-~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv 123 (425)
T PF14592_consen 66 GSYLVVSG-LKFKNGYTP---------TGAVIS----------F-RN-GGDASYANHCRLTNCVIDDFNNPDREESDNWV 123 (425)
T ss_dssp SSSEEEES--EEEEE------------TTT--T----------T-S---SEEE-SSS-EEES-EEES--SS-S-SEEE--
T ss_pred eeeEEEeC-eEEecCCCC---------CCceEE----------e-ec-CCCcceecceEEEeEEeeccCCcccccCceEE
Confidence 34444444 122 11100 000000 0 00 00112467888888888752 1 121
Q ss_pred E-EEeeeecEEEEeEEEEcCCCCCCCceee--ec----CcccEEEEeeEEe-------cCCceeeecCCCC--CeecEEE
Q 038762 173 L-HIVRCDNTFIRDMSIYGDFNTPNNDGID--IE----DSNNTVITRVQID-------TGDDAICPKTYTG--PLYNLTA 236 (268)
Q Consensus 173 i-~~~~~~nv~i~~~~i~~~~~~~~~DGi~--~~----~~~~v~I~n~~i~-------~gDD~i~i~s~~~--~~~nv~v 236 (268)
. .....++.+|+++.+.........=.+. .. ...+-+|+++.|. ++-..|.++.+.. ..++.+|
T Consensus 124 ~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~V 203 (425)
T PF14592_consen 124 TIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTV 203 (425)
T ss_dssp -TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EE
T ss_pred EEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceee
Confidence 0 0246788899999998743222222222 11 1225578999986 2346677766443 4578899
Q ss_pred EceEEecCCccEEeeee--eeeeEEeEEEEee
Q 038762 237 TDSWIRTKSSAIKLGSA--SWFDFKALVFDNI 266 (268)
Q Consensus 237 ~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni 266 (268)
++|.|..+..-..|-|. ....|++.+|.++
T Consensus 204 e~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es 235 (425)
T PF14592_consen 204 ENNLFERCDGEVEIISVKSSDNTIRNNTFRES 235 (425)
T ss_dssp ES-EEEEE-SSSEEEEEESBT-EEES-EEES-
T ss_pred ecchhhhcCCceeEEEeecCCceEeccEEEec
Confidence 99999875433333332 3347777777765
|
|
| >PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-05 Score=66.30 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred EEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCCC
Q 038762 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTYT 228 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~~ 228 (268)
-.|.+|+|+.|+|.+|..--. |..|+||+|+|..|.+- .=-+.|+|++..||+|++ ..=|.
T Consensus 150 Y~Fq~~kNvei~ns~l~sKDA----FWn~eNVtVyDS~i~GE--------YLgW~SkNltliNC~I~g~QpLCY------ 211 (277)
T PF12541_consen 150 YSFQYCKNVEIHNSKLDSKDA----FWNCENVTVYDSVINGE--------YLGWNSKNLTLINCTIEGTQPLCY------ 211 (277)
T ss_pred EEeeceeeEEEEccEEecccc----cccCCceEEEcceEeee--------EEEEEcCCeEEEEeEEeccCccEe------
Confidence 456777888888888754322 55788888888887652 111357888888998887 44443
Q ss_pred CCeecEEEEceEEecCCcc
Q 038762 229 GPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 229 ~~~~nv~v~n~~~~~~~~g 247 (268)
++|++++||++.+++-.
T Consensus 212 --~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 212 --CDNLVLENCTMIDTDLA 228 (277)
T ss_pred --ecceEEeCcEeecceee
Confidence 78999999999866544
|
Proteins in this family are typically between 281 and 297 amino acids in length. |
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0001 Score=64.11 Aligned_cols=47 Identities=32% Similarity=0.453 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. |-.-||+||++++. .. .-+|+|.||+|. +.+.|+ .+++|.++.
T Consensus 12 dGsG-df~TIq~Aida~P~-~~~~~~~I~Ik~G~Y~-E~V~I~~~k~~itl~G~~ 63 (317)
T PLN02773 12 DGSG-DYCTVQDAIDAVPL-CNRCRTVIRVAPGVYR-QPVYVPKTKNLITLAGLS 63 (317)
T ss_pred CCCC-CccCHHHHHhhchh-cCCceEEEEEeCceEE-EEEEECcCCccEEEEeCC
Confidence 4433 37899999999976 22 237899999995 555553 368887753
|
|
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=65.22 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred ceEEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCC----CCCCCcee-eec-CcccEEEEeeE
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDF----NTPNNDGI-DIE-DSNNTVITRVQ 214 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~----~~~~~DGi-~~~-~~~~v~I~n~~ 214 (268)
...|.+..++||.|+|++|++.. ..++.+..+++|.|+.|++.... .....||. ++. .+.+++|++|.
T Consensus 31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECce
Confidence 45678878889999999998743 35788888888888888887531 01124554 443 45688888888
Q ss_pred EecCCceeeecCCCCC----eecEEEEceEEec
Q 038762 215 IDTGDDAICPKTYTGP----LYNLTATDSWIRT 243 (268)
Q Consensus 215 i~~gDD~i~i~s~~~~----~~nv~v~n~~~~~ 243 (268)
|....-+.-++++... ..+|++.+|++..
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 8765555555553222 2368888888864
|
|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.4e-05 Score=63.68 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=83.8
Q ss_pred EEEEeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----
Q 038762 97 VLAENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA---- 169 (268)
Q Consensus 97 i~~~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---- 169 (268)
+....+.|++|.|.| ++. ..+|.+....||.|+|++|+..+
T Consensus 95 ~~iki~sNkTivG~g~~a~~~--------------------------------g~gl~i~~a~NVIirNltf~~~~~~d~ 142 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLV--------------------------------GGGLKIRDAGNVIIRNLTFEGFYQGDP 142 (345)
T ss_pred EEEeeccccEEEeeccccEEE--------------------------------eceEEEEeCCcEEEEeeEEEeeccCCC
Confidence 556888999999954 222 23677888999999999999765
Q ss_pred -CcEEEE-eeeecEEEEeEEEEcCCC---CCCCcee-eec-CcccEEEEeeEEecCCceeeecCCC-----CCeecEEEE
Q 038762 170 -YWCLHI-VRCDNTFIRDMSIYGDFN---TPNNDGI-DIE-DSNNTVITRVQIDTGDDAICPKTYT-----GPLYNLTAT 237 (268)
Q Consensus 170 -~~~i~~-~~~~nv~i~~~~i~~~~~---~~~~DGi-~~~-~~~~v~I~n~~i~~gDD~i~i~s~~-----~~~~nv~v~ 237 (268)
...|.+ ..+.|+.|++|++..... ....||. ++. .+.+|+|++|.|...|-..-+++.. ..-.+|++.
T Consensus 143 ~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~h 222 (345)
T COG3866 143 NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIH 222 (345)
T ss_pred CCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEe
Confidence 457888 788999999999986221 1234554 454 4568999999999887777666643 234558888
Q ss_pred ceEEecC
Q 038762 238 DSWIRTK 244 (268)
Q Consensus 238 n~~~~~~ 244 (268)
+|+|.+.
T Consensus 223 hNyFkn~ 229 (345)
T COG3866 223 HNYFKNL 229 (345)
T ss_pred ccccccc
Confidence 7777643
|
|
| >PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00061 Score=62.26 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred CcEEEECCCeEEEeeEEec---CceEEEEcCCeeEEeCCCC------CCCCCCCC----------ceEEEEEEeeeccEE
Q 038762 47 PCQVRFPPGEYLTATIRLK---SHVTLNIHEDATLLGGPRI------EDYPEESS----------RWYVVLAENATDVGI 107 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ga~l~~~~~~------~~~~~~~~----------~~~~i~~~~~~nv~I 107 (268)
.-+|||.||.|.-+.+... +++.+.+. ++|-+..-. +.|..... .|..+...+..++.+
T Consensus 256 ~~~VYlApGAyVkGAf~~~~~~~nv~i~G~--GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPGAYVKGAFEYTDTQQNVKITGR--GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TTEEEES-EEE---SSEEEEESS--SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCCcEEEEEEEEccCCceEEEEee--EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 4589999999988888765 44555444 677664321 11210000 011112334455566
Q ss_pred EeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccc----cEEEEeEEEeCCCCc---EEEEeeeec
Q 038762 108 TGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCR----NVNVWNVRLREPAYW---CLHIVRCDN 180 (268)
Q Consensus 108 ~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~n~~~~---~i~~~~~~n 180 (268)
.|. +|.. +....|.+.+.. +..|+|.++..+-.| |+.+ +.+
T Consensus 334 ~Gi-TI~~-----------------------------pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~n 381 (582)
T PF03718_consen 334 EGI-TIND-----------------------------PPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPN 381 (582)
T ss_dssp ES--EEE-------------------------------SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT
T ss_pred Eee-EecC-----------------------------CCcceEEecCCccccccceeeceeeeeeEEeccCCccc--cCC
Confidence 552 3221 112346666444 489999999875444 5544 478
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC--CceeeecCCCCCeecEEEEceEEecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG--DDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g--DD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
-+|+||-++. +.|+|.+.. .++.|+||.+... +-.|-.+-..+..+||+|+|+.+-.+
T Consensus 382 S~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 382 STIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHN 441 (582)
T ss_dssp -EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE-
T ss_pred CeeeeeEEEe-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEee
Confidence 8889999997 899998887 5999999999762 23344554456789999999988654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X. |
| >smart00656 Amb_all Amb_all domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00061 Score=55.28 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=101.7
Q ss_pred eeEEecCceEEEEcC-CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccC
Q 038762 60 ATIRLKSHVTLNIHE-DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTG 138 (268)
Q Consensus 60 ~~l~l~s~~~l~~~~-ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~ 138 (268)
.+|.++|+.||.+.. +++|++. .+.+..++||.|+. -++.+-....
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~--------------gl~i~~~~NVIirn-l~i~~~~~~~------------------ 56 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGG--------------GLTIKSVSNVIIRN-LTIHDPKPVY------------------ 56 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEee--------------EEEEEecceEEEeC-CEEECCccCC------------------
Confidence 468888999998863 4666542 23344577777777 2333211110
Q ss_pred CCCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcE-EE-EeeeecEEEEeEEEEcCCCCCCCceeeecC----
Q 038762 139 ACSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWC-LH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIED---- 204 (268)
Q Consensus 139 ~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~-i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~---- 204 (268)
...+.+|.+..+++|.|++|++.... ..+ +. ...+++++++++.+... ..|.-+..
T Consensus 57 -----~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h-----~~~~liG~~d~~ 126 (190)
T smart00656 57 -----GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNH-----WKVMLLGHSDSD 126 (190)
T ss_pred -----CCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecC-----CEEEEEccCCCc
Confidence 01234788899999999999998751 122 23 23578999999999752 22222221
Q ss_pred ----cccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecCC-ccEEeeeeeeeeEEeEEEEee
Q 038762 205 ----SNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTKS-SAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 205 ----~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~~-~gi~ig~~~~~~~~ni~~~ni 266 (268)
..+|++.++.|.+ ..-.=.+.. ..+.+.||++.+.. .++..+......+|+..|+++
T Consensus 127 ~~~~~~~vT~h~N~~~~~~~R~P~~r~-----g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 127 TDDGKMRVTIAHNYFGNLRQRAPRVRF-----GYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred cccccceEEEECcEEcCcccCCCcccC-----CEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 2369999999965 222211221 26899999998765 667777777788899998875
|
|
| >PLN02671 pectinesterase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0008 Score=59.45 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEc
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIH 73 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~ 73 (268)
||.. +-.-||+||+++++.. ..-+|+|.||+|. +.+.+ +.+++|.++
T Consensus 66 dGsG-df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 66 NGGG-DSLTVQGAVDMVPDYNSQRVKIYILPGIYR-EKVLVPKSKPYISFIGN 116 (359)
T ss_pred CCCC-CccCHHHHHHhchhcCCccEEEEEeCceEE-EEEEECCCCCeEEEEec
Confidence 4433 4789999999997621 1247999999995 44444 467888886
|
|
| >COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.6e-05 Score=63.61 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=86.2
Q ss_pred EEEEeccccEEEEeEEEe-CCCCcEEEEeeeecEEEEeEEEEcCC-CCCCCceeee-cCcccEEEEeeEEec--------
Q 038762 149 LVGFLGCRNVNVWNVRLR-EPAYWCLHIVRCDNTFIRDMSIYGDF-NTPNNDGIDI-EDSNNTVITRVQIDT-------- 217 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~-n~~~~~i~~~~~~nv~i~~~~i~~~~-~~~~~DGi~~-~~~~~v~I~n~~i~~-------- 217 (268)
.+.+.-|.|.+|.++--. ...++++.+...+||.|+|+.|+... .-++-|+|.+ ..+++|.|++|+|..
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 377888898888877532 33477899999999999999998632 2234699999 578899999999986
Q ss_pred -CCceeeecCCCCCeecEEEEceEEecCCccEEeeeee---------eeeEEeEEEEeeE
Q 038762 218 -GDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS---------WFDFKALVFDNIT 267 (268)
Q Consensus 218 -gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~---------~~~~~ni~~~ni~ 267 (268)
+|..+-++. .+..|+|.+|.|++...+.-+|+.. ..++.+..|+|+.
T Consensus 174 h~DGl~Dik~---~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 174 HGDGLVDIKK---DANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCCccEEecc---CCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 233355655 6889999999999877777777632 2566666666653
|
|
| >PLN02682 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0005 Score=60.94 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 29 YDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
-+-.-||+||++++... ..-+|+|.||+|. ..+.+ +.+++|++++
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYR-EKVNIPPLKAYITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceee-EEEEEeccCceEEEEecC
Confidence 35789999999997621 1247999999995 34444 5688888864
|
|
| >PLN02432 putative pectinesterase | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00059 Score=58.83 Aligned_cols=47 Identities=34% Similarity=0.465 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-.-||+||++++. .. .-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 18 ~Gsg-~f~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G~~ 69 (293)
T PLN02432 18 SGKG-DFRKIQDAIDAVPS-NNSQLVFIWVKPGIYR-EKVVVPADKPFITLSGTQ 69 (293)
T ss_pred CCCC-CccCHHHHHhhccc-cCCceEEEEEeCceeE-EEEEEeccCceEEEEEcC
Confidence 4433 47899999999986 32 247899999994 34444 4577777763
|
|
| >PRK10531 acyl-CoA thioesterase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00065 Score=61.09 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred cCCCCchhHHHHHHHHHhCCCCC--CCcEEEECCCeEEEeeEEe---cCceEEEEc
Q 038762 23 KGDGIHYDTAAIQSAIDACPPGN--KPCQVRFPPGEYLTATIRL---KSHVTLNIH 73 (268)
Q Consensus 23 ~~dg~~d~t~aiq~Ai~~~~~~~--~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~ 73 (268)
.+||.. +-.-||+||+++.+.. .--+|+|.||+|. +.+.+ +.+++|+++
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~kp~ItL~G~ 140 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAAAPPITLYGT 140 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCCCceEEEEec
Confidence 345533 4678999999864301 1247899999995 44455 468899885
|
|
| >PLN02665 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0013 Score=58.40 Aligned_cols=208 Identities=19% Similarity=0.162 Sum_probs=101.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCC-CcEEEECCCeEEEeeEEe---cCceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEE
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK-PCQVRFPPGEYLTATIRL---KSHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVL 98 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~-g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~ 98 (268)
||.. +-..||+||++++.... --+|+|.||+|. +.+.+ +.+++|.+++ .++|........+.... ....
T Consensus 75 dG~G-df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~---SaTv 149 (366)
T PLN02665 75 DGSG-DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVY---SATL 149 (366)
T ss_pred CCCC-CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcc---eEEE
Confidence 4433 47889999999977211 236889999996 44444 4578888864 24444432211111000 0011
Q ss_pred EEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeee
Q 038762 99 AENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRC 178 (268)
Q Consensus 99 ~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~ 178 (268)
....+++..++- +|... +...... ....-..++... .+...+.+|+|..- +..+... .
T Consensus 150 ~v~a~~F~a~ni-tf~Nt---a~~~~~~---------------~~g~QAVAl~v~-gDka~f~~C~f~G~-QDTL~~~-~ 207 (366)
T PLN02665 150 IVESDYFMAANI-IIKNS---APRPDGK---------------RKGAQAVAMRIS-GDKAAFYNCRFIGF-QDTLCDD-K 207 (366)
T ss_pred EEECCCeEEEee-EEEeC---CCCcCCC---------------CCCcceEEEEEc-CCcEEEEcceeccc-cceeEeC-C
Confidence 122233333331 11100 0000000 000011233332 56677777777643 2233322 2
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCce----eeecCC--CCCeecEEEEceEEecCCccEEeee
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDA----ICPKTY--TGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~----i~i~s~--~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
-...+++|.|+. ..|-|. +.-....++|++..-.++ |.--+. ........|.||++.+....+.+|-
T Consensus 208 gr~yf~~CyIeG-----~VDFIF--G~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGR 280 (366)
T PLN02665 208 GRHFFKDCYIEG-----TVDFIF--GSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGR 280 (366)
T ss_pred CCEEEEeeEEee-----ccceec--cccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecC
Confidence 345677777775 344332 334678899998873222 222111 1234678999999987543456664
Q ss_pred eeeeeEEeEEEEeeE
Q 038762 253 ASWFDFKALVFDNIT 267 (268)
Q Consensus 253 ~~~~~~~ni~~~ni~ 267 (268)
-+. .+..+.|.++.
T Consensus 281 pW~-~ysrvVf~~t~ 294 (366)
T PLN02665 281 AWM-SRPRVVFAYTE 294 (366)
T ss_pred CCC-CcceEEEEccc
Confidence 332 23455555544
|
|
| >PLN02634 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=58.62 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++... ..-+|+|-||+|. +.+.+ +.+++|.+++
T Consensus 63 dGsG-df~TIQaAIda~P~~~~~r~vI~Ik~GvY~-EkV~Ip~~k~~ItL~G~g 114 (359)
T PLN02634 63 NGHG-DFRSVQDAVDSVPKNNTMSVTIKINAGFYR-EKVVVPATKPYITFQGAG 114 (359)
T ss_pred CCCC-CccCHHHHHhhCcccCCccEEEEEeCceEE-EEEEEcCCCCeEEEEecC
Confidence 4543 4789999999997621 1237999999995 34444 4578888864
|
|
| >PLN02176 putative pectinesterase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00096 Score=58.63 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=99.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC--CeeEEeCCCCCCCCCCCCceEE
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE--DATLLGGPRIEDYPEESSRWYV 96 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~ 96 (268)
.||.. +-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++ .++|...... .. . .. ..
T Consensus 45 ~dGsG-df~TIq~AIdavP~-~~~~~~~I~Ik~GvY~-EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~-~t-~--~s-aT 116 (340)
T PLN02176 45 PNDAR-YFKTVQSAIDSIPL-QNQNWIRILIQNGIYR-EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQ-AT-D--TS-AT 116 (340)
T ss_pred CCCCC-CccCHHHHHhhchh-cCCceEEEEECCcEEE-EEEEECCCCccEEEEEcCCCceEEEEeCCc-cc-c--cc-eE
Confidence 34533 47899999999976 222 36899999995 44454 4579998874 2333332211 00 0 00 11
Q ss_pred EEEEeeeccEEEeccEEecC-CcccccchhhcccceecccccCCCCCCCCCceEE-EEeccccEEEEeEEEeCCCCcEEE
Q 038762 97 VLAENATDVGITGGGVVDGQ-AMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLV-GFLGCRNVNVWNVRLREPAYWCLH 174 (268)
Q Consensus 97 i~~~~~~nv~I~G~G~i~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~nv~I~~v~i~n~~~~~i~ 174 (268)
+. ...+++..++- +|... +.. . .......+++ .....+...+.+|.|..- +..+.
T Consensus 117 ~~-v~a~~F~a~nl-T~~Nt~~~~------~--------------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-QDTLy 173 (340)
T PLN02176 117 FT-SYASNIIITGI-TFKNTYNIA------S--------------NSSRPTKPAVAARMLGDKYAIIDSSFDGF-QDTLF 173 (340)
T ss_pred EE-EECCCEEEEee-EEEeCCCcc------C--------------CCCCCccceEEEEecCccEEEEccEEecc-cceeE
Confidence 11 12233333331 11100 000 0 0000011111 122356677777777743 22333
Q ss_pred EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc---------eeeecCCC--CCeecEEEEceEEec
Q 038762 175 IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD---------AICPKTYT--GPLYNLTATDSWIRT 243 (268)
Q Consensus 175 ~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD---------~i~i~s~~--~~~~nv~v~n~~~~~ 243 (268)
. ..-...+++|.|+. .-|-|- +.-....++|+|..-++ .|.--+.. .......|.||++.+
T Consensus 174 ~-~~gRqyf~~CyIeG-----~VDFIF--G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg 245 (340)
T PLN02176 174 D-GKGRHYYKRCVISG-----GIDFIF--GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTG 245 (340)
T ss_pred e-CCcCEEEEecEEEe-----cccEEe--cCceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEcc
Confidence 3 23446777888876 444332 33468889999875321 11111111 233579999999986
Q ss_pred CCccEEeeeeeeeeEEeEEEEeeE
Q 038762 244 KSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 244 ~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
.. -+.+|--+. .+..++|.|+.
T Consensus 246 ~g-~~yLGRPW~-~yarvVf~~t~ 267 (340)
T PLN02176 246 VG-KALLGRAWG-SYARVIFYRSR 267 (340)
T ss_pred Cc-ceeeecCCC-CCceEEEEecC
Confidence 32 244553322 23445554443
|
|
| >PLN02933 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0011 Score=61.58 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. .. .-+|+|.||+|. +.+.+ +.+++|++++
T Consensus 225 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~-E~V~I~~~k~~itl~G~g 276 (530)
T PLN02933 225 DGT-GNFTTINEAVSAAPN-SSETRFIIYIKGGEYF-ENVELPKKKTMIMFIGDG 276 (530)
T ss_pred CCC-CCccCHHHHHHhchh-cCCCcEEEEEcCceEE-EEEEecCCCceEEEEEcC
Confidence 443 347799999999977 32 247999999996 45555 3467787763
|
|
| >PLN02497 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00066 Score=59.41 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-..||+||++++. ... -+|+|-||+|. +.+.+ +.+++|.++.
T Consensus 38 ~dGsG-df~TIq~AIdavP~-~~~~~~~I~Ik~G~Y~-EkV~Ip~~k~~itl~G~g 90 (331)
T PLN02497 38 QSGHG-NFTTIQSAIDSVPS-NNKHWFCINVKAGLYR-EKVKIPYDKPFIVLVGAG 90 (331)
T ss_pred CCCCC-CccCHHHHHhhccc-cCCceEEEEEeCcEEE-EEEEecCCCCcEEEEecC
Confidence 34543 47899999999987 322 26999999995 33444 4678888764
|
|
| >PLN02304 probable pectinesterase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=58.06 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=34.3
Q ss_pred CCCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||. -+-.-||+||+++++. ...-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 81 ~dGs-Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~g 133 (379)
T PLN02304 81 PNGC-CNFTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQG 133 (379)
T ss_pred CCCC-CCccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECCCCCcEEEEecC
Confidence 3453 3477899999999762 12347899999995 44444 5688888864
|
|
| >PLN02301 pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0012 Score=61.68 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 243 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g 294 (548)
T PLN02301 243 DGS-GKYKTVKEAVASAPD-NSKTRYVIYVKKGTYK-ENVEIGKKKKNLMLVGDG 294 (548)
T ss_pred CCC-CCcccHHHHHHhhhh-cCCceEEEEEeCceee-EEEEecCCCceEEEEecC
Confidence 443 347899999999977 322 37999999995 34444 3577777763
|
|
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=60.19 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=65.4
Q ss_pred eEEEEe-ccccEEEEeEEEeC---------------CCCcEEEEeeeecEEEEeEEEEcCCC---CCCCce-eeec-Ccc
Q 038762 148 RLVGFL-GCRNVNVWNVRLRE---------------PAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDG-IDIE-DSN 206 (268)
Q Consensus 148 ~~i~~~-~~~nv~I~~v~i~n---------------~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DG-i~~~-~~~ 206 (268)
.++.+. .++||.|+|++|++ ....++.+..+.+|.|+.|++..... ....|| +++. .+.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 355565 99999999999998 24557888999999999999986311 112555 5665 577
Q ss_pred cEEEEeeEEecCCceeeecCCC----CCeecEEEEceEEecC
Q 038762 207 NTVITRVQIDTGDDAICPKTYT----GPLYNLTATDSWIRTK 244 (268)
Q Consensus 207 ~v~I~n~~i~~gDD~i~i~s~~----~~~~nv~v~n~~~~~~ 244 (268)
+|+|++|.|...+.+..+++.. ....++++-+|.|...
T Consensus 117 ~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 117 NVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANT 158 (200)
T ss_dssp EEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEE
T ss_pred eEEEEchhccccccccccCCCCCccccCCceEEEEeEEECch
Confidence 9999999998765555555541 1237899999999743
|
2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A .... |
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0053 Score=54.50 Aligned_cols=175 Identities=14% Similarity=0.064 Sum_probs=104.7
Q ss_pred EeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC-eEEE-eeEEecCceEEEEcCCeeEEeCCCCCC-CCCC-C
Q 038762 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLT-ATIRLKSHVTLNIHEDATLLGGPRIED-YPEE-S 91 (268)
Q Consensus 16 ~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G-~Y~~-~~l~l~s~~~l~~~~ga~l~~~~~~~~-~~~~-~ 91 (268)
.|+.|=..|+. -+.+||+.- .+|.+-|| +|.+ +++.|++...+.+. ||+++....... +.-. .
T Consensus 45 qvkt~~~~P~e------Dle~~I~~h------aKVaL~Pg~~Y~i~~~V~I~~~cYIiGn-GA~V~v~~~~~~~f~v~~~ 111 (386)
T PF01696_consen 45 QVKTYWMEPGE------DLEEAIRQH------AKVALRPGAVYVIRKPVNIRSCCYIIGN-GATVRVNGPDRVAFRVCMQ 111 (386)
T ss_pred eEEEEEcCCCc------CHHHHHHhc------CEEEeCCCCEEEEeeeEEecceEEEECC-CEEEEEeCCCCceEEEEcC
Confidence 45566666542 355566543 35888888 6986 68999999999887 899988432111 1000 1
Q ss_pred CceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCc
Q 038762 92 SRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYW 171 (268)
Q Consensus 92 ~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~ 171 (268)
+.++.+ .+..+|+... =.+++.+ ...+..|....++++.++.|.+..+.
T Consensus 112 ~~~P~V--~gM~~VtF~n-i~F~~~~----------------------------~~~g~~f~~~t~~~~hgC~F~gf~g~ 160 (386)
T PF01696_consen 112 SMGPGV--VGMEGVTFVN-IRFEGRD----------------------------TFSGVVFHANTNTLFHGCSFFGFHGT 160 (386)
T ss_pred CCCCeE--eeeeeeEEEE-EEEecCC----------------------------ccceeEEEecceEEEEeeEEecCcce
Confidence 111221 2333444333 1122211 13456677778899999999988877
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g 247 (268)
++... ...+|++|.+.+ .--|+.-.+-..+.|..|.|+--- +.+.+ -.+..+++|.+.++..-
T Consensus 161 cl~~~--~~~~VrGC~F~~-----C~~gi~~~~~~~lsVk~C~FekC~--igi~s----~G~~~i~hn~~~ec~Cf 223 (386)
T PF01696_consen 161 CLESW--AGGEVRGCTFYG-----CWKGIVSRGKSKLSVKKCVFEKCV--IGIVS----EGPARIRHNCASECGCF 223 (386)
T ss_pred eEEEc--CCcEEeeeEEEE-----EEEEeecCCcceEEeeheeeeheE--EEEEe----cCCeEEecceecccceE
Confidence 77555 678888999876 566676655557888888886422 33333 13445555555554443
|
E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis. |
| >PLN02484 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.002 Score=60.89 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. +-..||+||++++.+. ..-+|+|.||+|.-..+.++ .+++|.+++
T Consensus 279 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g 331 (587)
T PLN02484 279 DGNG-TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDG 331 (587)
T ss_pred CCCC-CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecC
Confidence 4533 4678999999998721 23478999999965445553 478887764
|
|
| >PLN02170 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=59.58 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCchhHHHHHHHHHhCCC--CCCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~--~~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-..||+||+++++ ....-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 231 ~dGsG-~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItl~G~g 284 (529)
T PLN02170 231 ADGSG-THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTKQKNVMLVGDG 284 (529)
T ss_pred CCCCC-chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCCCceEEEEEcC
Confidence 35543 47889999997643 122357999999995 44444 4578888764
|
|
| >PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00067 Score=58.93 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 29 YDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
-+-..||+||++++. .. .-+|+|.||+|. ..+.++ .+++|.++.
T Consensus 10 gdf~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~i~~~k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPD-NNTSRYTIFIKPGTYR-EKVTIPRSKPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-S-SSSS-EEEEE-SEEEE---EEE-STSTTEEEEES-
T ss_pred CCccCHHHHHHhchh-cCCceEEEEEeCeeEc-cccEeccccceEEEEecC
Confidence 356789999999987 32 247999999995 344443 477777763
|
1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A .... |
| >PLN02506 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0016 Score=60.73 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++.. ...-+|+|.||+|.- .+.+ +.+++|.+++
T Consensus 239 dGsG-~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E-~V~I~~~k~~i~l~G~g 290 (537)
T PLN02506 239 DGSG-HYRTITEAINEAPNHSNRRYIIYVKKGVYKE-NIDMKKKKTNIMLVGDG 290 (537)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCCeeeE-EEeccCCCceEEEEEcC
Confidence 4533 477999999999762 123489999999953 3333 3567777663
|
|
| >PLN02708 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0037 Score=58.75 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHHhCCCC--CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG--NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~--~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++.. ..--+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 248 dGs-g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~-E~V~i~~~k~~v~l~G~g 300 (553)
T PLN02708 248 DGN-CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE-ETVRVPLEKKNVVFLGDG 300 (553)
T ss_pred CCC-CCccCHHHHHHhhhhccCCccEEEEEeCceEE-eeeeecCCCccEEEEecC
Confidence 443 3478899999998771 12248999999996 33443 3577777763
|
|
| >PLN02713 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0023 Score=60.24 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCC----CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN----KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~----~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-.-||+||++++... .--+|+|.||+|. ..+.+ +.+++|++++
T Consensus 257 dGsG-~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g 311 (566)
T PLN02713 257 NGTG-NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKNKKYLMMIGDG 311 (566)
T ss_pred CCCC-CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCCCceEEEEecC
Confidence 4533 4778999999987611 1247999999995 44444 3467777763
|
|
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0043 Score=57.08 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||+++++. ...-+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 204 dGs-G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItliGdg 255 (509)
T PLN02488 204 DGS-GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD-EIVRIGSTKPNLTLIGDG 255 (509)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCCeeE-EEEEecCCCccEEEEecC
Confidence 443 4577899999999772 11247999999995 34444 4578888874
|
|
| >PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=60.37 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCchhHHHHHHHHHhCCCCCC-----CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNK-----PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~-----g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-.-||+||++++. .. --+|+|.+|+|. ..+.+ +.+++|.+++
T Consensus 229 ~dGsG-~f~TI~~Av~a~p~-~~~~~~~r~vI~vk~G~Y~-E~V~i~~~k~~i~l~G~g 284 (538)
T PLN03043 229 PYGTD-NFTTITDAIAAAPN-NSKPEDGYFVIYAREGYYE-EYVVVPKNKKNIMLIGDG 284 (538)
T ss_pred CCCCC-CCcCHHHHHHhccc-cCCCCcceEEEEEcCeeeE-EEEEeCCCCCcEEEEecC
Confidence 35543 47899999999987 32 138999999995 34444 3467777763
|
|
| >PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00099 Score=56.34 Aligned_cols=221 Identities=16% Similarity=0.170 Sum_probs=113.9
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEE--E-eeEEecCceEEEEcCCeeEEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL--T-ATIRLKSHVTLNIHEDATLLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~--~-~~l~l~s~~~l~~~~ga~l~~~~~~~~ 86 (268)
+....+++.||.. .|=-++|.+|+.+ +.+|++|+|--. + ..+.++.+-||.+. +.|++.+.. .
T Consensus 30 ~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip~gktl~v~--g~l~gngrg-r 95 (464)
T PRK10123 30 PARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIPPGKTLHIL--GSLRGNGRG-R 95 (464)
T ss_pred CCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeCCCCeEEEE--EEeecCCce-e
Confidence 4667899999954 4567889999875 447999999542 3 35777777777776 455553210 0
Q ss_pred CCCCCCceEEE-EEEeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 87 YPEESSRWYVV-LAENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 87 ~~~~~~~~~~i-~~~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
+...++....- .....+|+++.=+| +|.|-... .+.+-. ..+ -+...|+. -+|++|++
T Consensus 96 fvlqdg~qv~ge~~g~~hnitldvrgsdc~ikgiams---gfgpvt----qiy------iggk~prv-----mrnl~id~ 157 (464)
T PRK10123 96 FVLQDGSQVTGEEGGSMHNITLDVRGSDCTIKGLAMS---GFGPVT----QIY------IGGKNKRV-----MRNLTIDN 157 (464)
T ss_pred EEEecCCEeecCCCceeeeEEEeeccCceEEeeeeec---ccCcee----EEE------EcCCCchh-----hhccEEcc
Confidence 10000000000 00111222222111 11110000 000000 000 00112222 27888888
Q ss_pred EEEeCCCCcEEEE----eeeecEEEEeEEEEcCCCCCCCceeeec---CcccEEEEeeEEec-----CCc--eeeec---
Q 038762 163 VRLREPAYWCLHI----VRCDNTFIRDMSIYGDFNTPNNDGIDIE---DSNNTVITRVQIDT-----GDD--AICPK--- 225 (268)
Q Consensus 163 v~i~n~~~~~i~~----~~~~nv~i~~~~i~~~~~~~~~DGi~~~---~~~~v~I~n~~i~~-----gDD--~i~i~--- 225 (268)
+++..+-+ ++.- ...++.+|.++++.. -.+|.|.+. +-+++.|++-.++. |.- +|.++
T Consensus 158 itv~~any-ailrqgfhnq~dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglag 232 (464)
T PRK10123 158 LTVSHANY-AILRQGFHNQIIGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAG 232 (464)
T ss_pred EEEeeccH-HHHhhhhhhccccceeecccccc----ccCceEEEEEEecccceeeehheheeecccCCcccceeeeeecc
Confidence 88887632 2222 133556666666654 477888763 34577777766643 111 11111
Q ss_pred CC-------CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeE
Q 038762 226 TY-------TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 226 s~-------~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
|. ...+.|.+|-|.+-.++..-+.+-......|+|+..+|||
T Consensus 233 stydn~ype~q~vknfvvanitgs~crqlvhvengkhfvirnvkaknit 281 (464)
T PRK10123 233 STYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKAKNIT 281 (464)
T ss_pred ccccCCCchhhhhhhEEEEeccCcChhheEEecCCcEEEEEeeeccccC
Confidence 11 1247788888777666544467777777788888888875
|
|
| >PLN02745 Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=59.11 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
+-..||+||++++... ..-+|+|.||+|. ..+.++ .+++|++++
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYD-ETVTVDKKMVNVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeE-EEEEEcCCCceEEEEecC
Confidence 4789999999987721 2247999999996 344443 477887764
|
|
| >PLN02416 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0022 Score=60.05 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 237 dGs-G~f~TIq~Ai~a~p~-~~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 237 DGT-GNFSTITDAINFAPN-NSNDRIIIYVREGVYE-ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred CCC-CCccCHHHHHHhhhh-cCCceEEEEEeCceeE-EEEecCCCCccEEEEecC
Confidence 443 347899999999876 322 37899999995 34444 3578887763
|
|
| >PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=55.49 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=54.8
Q ss_pred eEEEEeccccEEEEeEEEeCC--------CCcEEEEe-eeecEEEEeEEEEcCCCC---CCCceeeecCcccEEEEeeEE
Q 038762 148 RLVGFLGCRNVNVWNVRLREP--------AYWCLHIV-RCDNTFIRDMSIYGDFNT---PNNDGIDIEDSNNTVITRVQI 215 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~--------~~~~i~~~-~~~nv~i~~~~i~~~~~~---~~~DGi~~~~~~~v~I~n~~i 215 (268)
-++.+..++||.|++|++... .-..+.+. .++++||+++.+...... ...|......+.++++.++.|
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 457777777777777777765 33334443 467777777777642110 012222222335677777777
Q ss_pred ec--CCceeeecCCCCCeecEEEEceEEe-cCCccEEeeeeeeeeEEeEEE
Q 038762 216 DT--GDDAICPKTYTGPLYNLTATDSWIR-TKSSAIKLGSASWFDFKALVF 263 (268)
Q Consensus 216 ~~--gDD~i~i~s~~~~~~nv~v~n~~~~-~~~~gi~ig~~~~~~~~ni~~ 263 (268)
.+ +.-. .++. ..+.+.||.+. ....++..+......+|+..|
T Consensus 156 ~~~~~R~P-~~r~-----G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 ANTNSRNP-RVRF-----GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp EEEEE-TT-EECS-----CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CchhhCCC-cccc-----cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 54 1111 1211 24667777554 345566666555555555443
|
2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A .... |
| >PLN02995 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0044 Score=58.00 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCchhHHHHHHHHHhCCCC---CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG---NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~---~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++.. ...-+|+|.||+|.- .+.+ +.+++|.+++
T Consensus 230 dGs-G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E-~V~i~~~k~~i~l~G~g 283 (539)
T PLN02995 230 DGS-GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQE-NINVRLNNDDIMLVGDG 283 (539)
T ss_pred CCC-CCccCHHHHHHhcccccCCCceEEEEEeCCEeEE-EEEecCCCCcEEEEEcC
Confidence 443 3577999999998741 223579999999953 3444 4588888874
|
|
| >PLN02197 pectinesterase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=59.03 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|++++
T Consensus 282 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~-E~V~I~~~k~ni~l~G~g 333 (588)
T PLN02197 282 DGS-GQFKTISQAVMACPD-KNPGRCIIHIKAGIYN-EQVTIPKKKNNIFMFGDG 333 (588)
T ss_pred CCC-CCcCCHHHHHHhccc-cCCceEEEEEeCceEE-EEEEccCCCceEEEEEcC
Confidence 443 347799999999977 322 36899999995 34444 3477887764
|
|
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.01 Score=55.20 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||. -+-..||+||++++.. ...-+|+|.||+|. ..+.++ .+++|.+++
T Consensus 213 dGs-G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 264 (520)
T PLN02201 213 DGT-GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL-ENVEIKKKKWNIMMVGDG 264 (520)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCceeE-EEEEecCCCceEEEEecC
Confidence 453 3578999999999762 12348999999995 444543 467777763
|
|
| >PLN02916 pectinesterase family protein | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.012 Score=54.36 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhCCCC----CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG----NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~----~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||. -+-.-||+||+++++. ...-+|+|.||+|. ..+.++ .+++|.+++
T Consensus 194 dGs-G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 248 (502)
T PLN02916 194 DGS-GTHRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRHMKNVMFVGDG 248 (502)
T ss_pred CCC-CCccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCCCceEEEEecC
Confidence 443 3467899999998740 12247999999996 444443 467787763
|
|
| >PLN02314 pectinesterase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0086 Score=56.73 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
+-.-||+||++++. .. --+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 289 ~f~TI~~Av~a~p~-~~~~r~vI~ik~G~Y~-E~V~i~~~k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPK-KSKSRFVIYVKEGTYV-ENVLLDKSKWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEcCceEE-EEEEecCCCceEEEEecC
Confidence 46789999999977 32 237999999995 34444 3467777764
|
|
| >PLN02217 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0059 Score=58.30 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
+-.-||+||++++. .. .-+|+|.+|+|.- .+.++ .+++|.+++
T Consensus 261 ~f~TIq~Av~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~Gdg 308 (670)
T PLN02217 261 QYKTINEALNFVPK-KKNTTFVVHIKAGIYKE-YVQVNRSMTHLVFIGDG 308 (670)
T ss_pred CccCHHHHHHhccc-cCCceEEEEEeCCceEE-EEEEcCCCCcEEEEecC
Confidence 47899999999977 22 2379999999953 44443 366677663
|
|
| >PLN02468 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0083 Score=56.55 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. +-.-||+||++++.. ...-+|+|.||+|. +.+.++ .+++|.+++
T Consensus 265 dGsg-~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~-E~V~i~~~k~~i~~~G~g 316 (565)
T PLN02468 265 DGSG-KYKTISEALKDVPEKSEKRTIIYVKKGVYF-ENVRVEKKKWNVVMVGDG 316 (565)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCCceE-EEEEecCCCCeEEEEecC
Confidence 4533 358999999998762 12348999999995 344442 467777763
|
|
| >PLN02990 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=55.49 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=33.2
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++. .. --+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 266 dGsG-~f~TIq~Av~a~p~-~~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 317 (572)
T PLN02990 266 DGSG-QYKTINEALNAVPK-ANQKPFVIYIKQGVYN-EKVDVTKKMTHVTFIGDG 317 (572)
T ss_pred CCCC-CCcCHHHHHhhCcc-cCCceEEEEEeCceeE-EEEEecCCCCcEEEEecC
Confidence 4533 46789999999977 32 237999999995 34444 3578888773
|
|
| >PLN02313 Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0092 Score=56.49 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++. ... -+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 282 dGsG-~f~TI~~Av~a~p~-~~~~r~vI~ik~GvY~-E~V~i~~~k~ni~l~Gdg 333 (587)
T PLN02313 282 DGSG-DFTTVAAAVAAAPE-KSNKRFVIHIKAGVYR-ENVEVTKKKKNIMFLGDG 333 (587)
T ss_pred CCCC-CCccHHHHHHhccc-cCCceEEEEEeCceeE-EEEEeCCCCCeEEEEecC
Confidence 4433 46799999999987 332 38999999995 33444 3467777763
|
|
| >PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=49.12 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred EEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC--CCCeecEEEEceEEecCCccEE
Q 038762 173 LHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY--TGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 173 i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~--~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ +.++|.+... .....+++|+.+.+.....||.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence 344556677899999998521 35678888876 99999999988 7788987654 3578889999999998888998
Q ss_pred eeeeeee---eEEeEEEEee
Q 038762 250 LGSASWF---DFKALVFDNI 266 (268)
Q Consensus 250 ig~~~~~---~~~ni~~~ni 266 (268)
+-..... .++|..+++-
T Consensus 169 i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 169 ISDNAAPVENKIENNIIENN 188 (246)
T ss_pred EEcccCCccceeeccEEEeC
Confidence 8554333 6788777753
|
Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT). |
| >COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.097 Score=45.55 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY 227 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~ 227 (268)
+++...+++..+++-.++... ++++...+.+..+++..... +.-|.-++.+++++|.|+.-.. .|-+|-+.-
T Consensus 174 gIy~~~S~~~~~~gnr~~~~R-ygvHyM~t~~s~i~dn~s~~-----N~vG~ALMys~~l~V~~nrS~Gnrd~Gillny- 246 (408)
T COG3420 174 GIYSDTSQHNVFKGNRFRDLR-YGVHYMYTNDSRISDNSSRD-----NRVGYALMYSDRLKVSDNRSSGNRDHGILLNY- 246 (408)
T ss_pred eEEEcccccceecccchhhee-eeEEEEeccCcEeecccccC-----CcceEEEEEeccEEEEcCcccCccccceeeee-
Confidence 455555555555555555553 36666666666666555543 6667777777777777666544 455554432
Q ss_pred CCCeecEEEEceEEecCCcc--EEeeeeeeeeEEeEEEEeeEC
Q 038762 228 TGPLYNLTATDSWIRTKSSA--IKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~~~g--i~ig~~~~~~~~ni~~~ni~i 268 (268)
.+.=.|.+|...+..+| +-|-.....++++.+|+++.+
T Consensus 247 ---a~~s~i~~N~v~g~~~Gk~vfiyn~~~~ki~~n~feg~~i 286 (408)
T COG3420 247 ---ANYSRIVGNRVAGNVSGKCVFIYNANYNKIRGNSFEGCAI 286 (408)
T ss_pred ---eeccceeccEEEecccceEEEEeccchhhhccceeecceE
Confidence 23333444444334455 334334445777777777653
|
|
| >PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0038 Score=39.90 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=23.2
Q ss_pred ccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC-eEEEeeEE
Q 038762 22 AKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLTATIR 63 (268)
Q Consensus 22 a~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G-~Y~~~~l~ 63 (268)
|+|||++|||+||.+++++.+. | .++=..| +|.+.++.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~~---g-~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASPV---G-RKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-T---T-S-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhccCC---C-eEEecCCceEEEeeCc
Confidence 6899999999999999998754 3 4444455 78777654
|
The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E. |
| >COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.085 Score=45.60 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec-C--ceEEEEc
Q 038762 29 YDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK-S--HVTLNIH 73 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~-s--~~~l~~~ 73 (268)
++-..||+|+|++....+ --.|.+-||.|. +.+.++ + .++|+++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 567889999998765222 235667899993 444443 2 3777765
|
|
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0093 Score=35.98 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=23.3
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEe
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQID 216 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~ 216 (268)
||.+..+.+.+|++..+.. +.+||++..+++-+|+++.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 3455556666666666654 455666666555566555554
|
This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences. |
| >PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.19 Score=41.20 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred EEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCe
Q 038762 158 VNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPL 231 (268)
Q Consensus 158 v~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~ 231 (268)
+.|+|++|.... ..++.+..++++.|+++++.+ .+.+|+.+..+....+.+.... .++.+.. ..
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~---~~ 163 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDN---GS 163 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEES---CE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeecc---ce
Confidence 448888886432 247888889999999999987 4678888775444444333221 0121211 23
Q ss_pred ecEEEEceEEecCCccEEeeeeeeeeEEeEEEE
Q 038762 232 YNLTATDSWIRTKSSAIKLGSASWFDFKALVFD 264 (268)
Q Consensus 232 ~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ 264 (268)
.++.+.++.+.+...|+..+. ....++|..++
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~-~~~~i~n~~~~ 195 (225)
T PF12708_consen 164 NNVIVNNCIFNGGDNGIILGN-NNITISNNTFE 195 (225)
T ss_dssp EEEEEECEEEESSSCSEECEE-EEEEEECEEEE
T ss_pred eEEEECCccccCCCceeEeec-ceEEEEeEEEC
Confidence 667788888888777753333 23344444443
|
... |
| >TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.016 Score=34.86 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=34.9
Q ss_pred eeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 199 GIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 199 Gi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
||+++.+.+.+|+++.+....|||.+.. +++-++++|++...
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~----s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD----SSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe----CCCCEeECCEEEcC
Confidence 7888888888899999999777999876 57778888888754
|
This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences. |
| >PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.51 Score=40.32 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=23.7
Q ss_pred eecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCcee
Q 038762 178 CDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAI 222 (268)
Q Consensus 178 ~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i 222 (268)
.+|.+|+++++.-..+.--..|+|-.- ..+.|.||.|+. ..|+|
T Consensus 150 mrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdai 194 (464)
T PRK10123 150 MRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAI 194 (464)
T ss_pred hhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceE
Confidence 456667776665432222344554322 356677777766 44554
|
|
| >PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.2 Score=39.88 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=68.7
Q ss_pred EeccccEEEEeEEEeCCC-CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCC
Q 038762 152 FLGCRNVNVWNVRLREPA-YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGP 230 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~-~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~ 230 (268)
+.+-.+|++.|+.|.... .-++.+....++.+.+|.+.+ ..+--+.++ ....|++|.|..---||.- ++
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~g----f~g~cl~~~--~~~~VrGC~F~~C~~gi~~----~~ 186 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFG----FHGTCLESW--AGGEVRGCTFYGCWKGIVS----RG 186 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEec----CcceeEEEc--CCcEEeeeEEEEEEEEeec----CC
Confidence 344578999999998766 668888899999999999986 333334433 4789999999653333422 34
Q ss_pred eecEEEEceEEecCCccEEeeeeeeeeEEeEEEEe
Q 038762 231 LYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 231 ~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~n 265 (268)
...+.|++|+|....=|| -++....+++..+.|
T Consensus 187 ~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~e 219 (386)
T PF01696_consen 187 KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASE 219 (386)
T ss_pred cceEEeeheeeeheEEEE--EecCCeEEecceecc
Confidence 778889999998654444 333333444444433
|
E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis. |
| >PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.32 Score=39.94 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=36.5
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-cEEEEeeEEecCCc
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-NTVITRVQIDTGDD 220 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-~v~I~n~~i~~gDD 220 (268)
.++|.++ +..+|+|+.|-....-+|+... +.+|+|+..+. -..|++.+.+.. .+.|.+.-..+.+|
T Consensus 54 ~~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~D 120 (215)
T PF03211_consen 54 DPVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASD 120 (215)
T ss_dssp --SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEE
T ss_pred ceEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCc
Confidence 3455555 5667777777554445666665 66666666664 456666665544 55555555555333
|
It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A. |
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
Probab=92.05 E-value=3.5 Score=32.98 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=61.0
Q ss_pred ccEEEEeEEEeCCCCcEEEEeee---------ecEEEEeEEEEcCCC---CCCCceeeecCcccEEEEeeEEec-CCcee
Q 038762 156 RNVNVWNVRLREPAYWCLHIVRC---------DNTFIRDMSIYGDFN---TPNNDGIDIEDSNNTVITRVQIDT-GDDAI 222 (268)
Q Consensus 156 ~nv~I~~v~i~n~~~~~i~~~~~---------~nv~i~~~~i~~~~~---~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i 222 (268)
+++.|-|-+|.+...+||.+... ++|.|.+..|..... ..+..||-..+-.+.+|||+.|.. -.-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 46778888888888888777654 478888888876443 346778888887889999999976 45555
Q ss_pred eec------CCCCCeecEEEEceEEecC
Q 038762 223 CPK------TYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i~------s~~~~~~nv~v~n~~~~~~ 244 (268)
+-. +..+.-.-.+|||+.+.++
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeee
Confidence 532 1112334467777777644
|
Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO. |
| >PLN02773 pectinesterase | Back alignment and domain information |
|---|
Probab=90.22 E-value=5.3 Score=35.11 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=61.8
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEE-EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.+..++++.++|++|+|+... ++. ....+.+.+.+|++.. ..|-+.... ..-..+||.|+..=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G-----~QDTL~~~~-gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLG-----WQDTLYLHY-GKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeec-----ccceeEeCC-CCEEEEeeEEeecccEE-ee
Confidence 444689999999999997321 222 2246889999999997 566665543 35788999999876766 33
Q ss_pred CCCCCeecEEEEceEEecCCcc
Q 038762 226 TYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~~~~g 247 (268)
. ....|++|+++....|
T Consensus 170 ~-----g~a~Fe~c~i~s~~~g 186 (317)
T PLN02773 170 N-----STALLEHCHIHCKSAG 186 (317)
T ss_pred c-----cEEEEEeeEEEEccCc
Confidence 3 5689999999866555
|
|
| >PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A | Back alignment and domain information |
|---|
Probab=89.94 E-value=2 Score=39.03 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=58.1
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC-----Cce
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG-----DDA 221 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g-----DD~ 221 (268)
+..+...-+.| ++++=+|++|.+ .+.+..-.+.+|++..+........+-||.+.+. +=+|.|+.|..- +-+
T Consensus 215 ~EIISvKS~~N-~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~-~H~I~nNY~~gl~g~~~~~~ 291 (425)
T PF14592_consen 215 VEIISVKSSDN-TIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGE-GHTIYNNYFEGLTGTRFRGA 291 (425)
T ss_dssp SEEEEEESBT--EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SB-S-EEES-EEEESSB-TTTTS
T ss_pred eeEEEeecCCc-eEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEecC-CcEEEcceeeccccceeecc
Confidence 34555554444 566777888876 7888888888888888876544456789999885 556777787652 222
Q ss_pred eee-----cC---CCCCeecEEEEceEEecCCccEEeee
Q 038762 222 ICP-----KT---YTGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 222 i~i-----~s---~~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
+++ ++ ....+.|++|.+|+|.++..+|.+|.
T Consensus 292 ~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 292 LAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp EE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred eeeccCCCCCCcccccccceeEEecceEEccCCceEEcc
Confidence 321 11 12368999999999999888888876
|
|
| >PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue | Back alignment and domain information |
|---|
Probab=87.40 E-value=13 Score=30.66 Aligned_cols=38 Identities=11% Similarity=-0.093 Sum_probs=19.2
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeee-cEEEEeEEE
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCD-NTFIRDMSI 188 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~-nv~i~~~~i 188 (268)
+++... +.+|+||..++-...++.+.... .++|.+--.
T Consensus 77 GIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 77 GIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp -EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred ceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 455554 56666666666555555555544 344443333
|
It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A. |
| >PLN02708 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=86.21 E-value=8.4 Score=36.61 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=59.7
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+. .++...+.+|+|.+ ..|-+..... .-..++|.|++.=|-| +
T Consensus 324 T~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtVDFI-F 396 (553)
T PLN02708 324 TVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLG-----NQDTLYAHSL-RQFYKSCRIQGNVDFI-F 396 (553)
T ss_pred EEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceeCCC-ceEEEeeEEeecCCEE-e
Confidence 334457899999999999653 233333 46789999999997 5565655443 4578999999876766 3
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
+. ....|+||++..
T Consensus 397 G~-----a~avfq~c~i~~ 410 (553)
T PLN02708 397 GN-----SAAVFQDCAILI 410 (553)
T ss_pred cC-----ceEEEEccEEEE
Confidence 33 689999999984
|
|
| >PLN02713 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=85.34 E-value=9.4 Score=36.39 Aligned_cols=81 Identities=12% Similarity=0.000 Sum_probs=59.0
Q ss_pred EeccccEEEEeEEEeCCCC----cEEE-EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 152 FLGCRNVNVWNVRLREPAY----WCLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~----~~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
....+++..+|++|+|..+ -++. -..++...+.+|++.+ ..|-+..... .-..++|.|++.=|-| ++
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG- 407 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA-----YQDTLYTHSL-RQFYRECDIYGTVDFI-FG- 407 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc-----CCcceEECCC-CEEEEeeEEeccccee-cc-
Confidence 3456999999999999642 1232 2356789999999997 5666665543 5688999999876666 33
Q ss_pred CCCCeecEEEEceEEecC
Q 038762 227 YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~ 244 (268)
...+.|+||.+...
T Consensus 408 ----~a~avfq~C~i~~~ 421 (566)
T PLN02713 408 ----NAAVVFQNCNLYPR 421 (566)
T ss_pred ----cceEEEeccEEEEe
Confidence 36889999999753
|
|
| >PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina | Back alignment and domain information |
|---|
Probab=84.98 E-value=9.6 Score=30.54 Aligned_cols=84 Identities=21% Similarity=0.153 Sum_probs=51.8
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecC---------cccEEEEeeEEec-CCce-eeecC--CCCCeecEEEEceEEecCC
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIED---------SNNTVITRVQIDT-GDDA-ICPKT--YTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~---------~~~v~I~n~~i~~-gDD~-i~i~s--~~~~~~nv~v~n~~~~~~~ 245 (268)
++|+|.|..|.. ...-||-+.+ .++|+|+++.|.. |-.. +..-. -..+.+|-+|||++|.+..
T Consensus 2 ~dIEIYnN~I~~----T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYN----TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeec----ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence 578888988887 4566666643 3589999999864 3211 11000 0125789999999999875
Q ss_pred cc-EEe----------eeeeeeeEEeEEEEee
Q 038762 246 SA-IKL----------GSASWFDFKALVFDNI 266 (268)
Q Consensus 246 ~g-i~i----------g~~~~~~~~ni~~~ni 266 (268)
++ |.- |+...-.++|..+.|.
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 53 432 2334446666666553
|
Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO. |
| >PLN02698 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=84.80 E-value=8 Score=36.25 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=26.9
Q ss_pred eccccEEEEeEEEeCCCCc----EEEEe-eeecEEEEeEEEEcC
Q 038762 153 LGCRNVNVWNVRLREPAYW----CLHIV-RCDNTFIRDMSIYGD 191 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~~----~i~~~-~~~nv~i~~~~i~~~ 191 (268)
...+++..+|++|+|..+. ++.+. ..+...+.+|++.+.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~ 310 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY 310 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc
Confidence 4568999999999986532 22222 467788888888763
|
|
| >PLN02506 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=84.63 E-value=9.4 Score=36.12 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=60.0
Q ss_pred EEEEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+. .+.+ ...+...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G-----~QDTLy~~~~-rqyy~~C~I~GtVDFI- 384 (537)
T PLN02506 312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG-----YQDTLYAHSL-RQFYRECEIYGTIDFI- 384 (537)
T ss_pred eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec-----ccccceecCC-ceEEEeeEEecccceE-
Confidence 34456789999999999987422 2222 247889999999987 5555554443 4688999999876665
Q ss_pred ecCCCCCeecEEEEceEEecC
Q 038762 224 PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|+||++...
T Consensus 385 FG~-----a~avfq~C~i~~r 400 (537)
T PLN02506 385 FGN-----GAAVLQNCKIYTR 400 (537)
T ss_pred ccC-----ceeEEeccEEEEc
Confidence 333 5689999999853
|
|
| >PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=11 Score=35.82 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=59.7
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|+|.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g-----yQDTLy~~~-~rq~y~~c~I~GtVDFI- 378 (538)
T PLN03043 306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG-----YQDTLYVHS-LRQFYRECDIYGTVDFI- 378 (538)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec-----cCcccccCC-CcEEEEeeEEeeccceE-
Confidence 3444567999999999999643 233333 46779999999997 555555544 34688999999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||++..
T Consensus 379 FG~-----a~avfq~c~i~~ 393 (538)
T PLN03043 379 FGN-----AAAIFQNCNLYA 393 (538)
T ss_pred eec-----ceeeeeccEEEE
Confidence 333 678999999975
|
|
| >KOG1777 consensus Putative Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.47 E-value=22 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=25.0
Q ss_pred CcEEEECCCeEEEeeEEecCceEEEEcCCe
Q 038762 47 PCQVRFPPGEYLTATIRLKSHVTLNIHEDA 76 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga 76 (268)
...+++-+|+|....+.+.|++.+.++.+.
T Consensus 48 e~LIFlH~G~~e~~~i~I~sdvqiiGAs~~ 77 (625)
T KOG1777|consen 48 EKLIFLHEGTHETETIRITSDVQIIGASPS 77 (625)
T ss_pred cceEEEEeccccceEEEEcCCeeEeccCCc
Confidence 668889999999889999999988877543
|
|
| >PLN02416 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=83.63 E-value=10 Score=35.92 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=58.5
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG 384 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTING-----YQDTLYVHS-FRQFYRECDIYGTIDYI-FG 384 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEec-----ccchhccCC-CceEEEeeEEeecccee-ec
Confidence 344589999999999986432 2222 246889999999997 455554443 35688999999876665 33
Q ss_pred CCCCCeecEEEEceEEecC
Q 038762 226 TYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~~ 244 (268)
. ....|+||++...
T Consensus 385 ~-----a~avfq~c~i~~~ 398 (541)
T PLN02416 385 N-----AAVVFQACNIVSK 398 (541)
T ss_pred c-----ceEEEeccEEEEe
Confidence 3 6789999999753
|
|
| >PLN02301 pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=83.50 E-value=12 Score=35.52 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=60.2
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 388 (548)
T PLN02301 316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDA-----YQDTLYAHSL-RQFYRDSYITGTVDFI- 388 (548)
T ss_pred EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceecCC-cEEEEeeEEEecccee-
Confidence 3444567999999999998643 233332 46789999999997 5555555443 4588999999876666
Q ss_pred ecCCCCCeecEEEEceEEecC
Q 038762 224 PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|+||++...
T Consensus 389 FG~-----a~avfq~c~i~~~ 404 (548)
T PLN02301 389 FGN-----AAVVFQNCKIVAR 404 (548)
T ss_pred ccc-----ceeEEeccEEEEe
Confidence 333 6889999999753
|
|
| >PLN02201 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=83.44 E-value=16 Score=34.38 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=59.2
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|+.+ -++.+. .++...+.+|++.+ +.|-+..... .-..++|.|++.=|-| +
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-F 359 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRG-----YQDTLYTHTM-RQFYRECRITGTVDFI-F 359 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeec-----cCCeeEeCCC-CEEEEeeEEeecccEE-e
Confidence 344558999999999998643 233333 46789999999997 5666665543 4567899999876665 3
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
+. ....|+||++..
T Consensus 360 G~-----a~avf~~C~i~~ 373 (520)
T PLN02201 360 GD-----ATAVFQNCQILA 373 (520)
T ss_pred cC-----ceEEEEccEEEE
Confidence 33 678999999985
|
|
| >PLN02480 Probable pectinesterase | Back alignment and domain information |
|---|
Probab=83.31 E-value=9.4 Score=33.94 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=59.1
Q ss_pred EeccccEEEEeEEEeCCC---------CcEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCce
Q 038762 152 FLGCRNVNVWNVRLREPA---------YWCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDA 221 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~---------~~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~ 221 (268)
....++++++|++|+|+. .-++.+ ..++...|++|++.. ..|-+.... ..-..++|.|+..=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYS-----THNTLFDYK-GRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEec-----ccceeEeCC-CCEEEEeCEEEeeeeE
Confidence 445789999999999972 124444 457889999999987 556555433 3577889999986666
Q ss_pred eeecCCCCCeecEEEEceEEecC
Q 038762 222 ICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 222 i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
| ++. ....|++|+++..
T Consensus 202 I-FG~-----g~a~fe~C~i~s~ 218 (343)
T PLN02480 202 I-FGR-----GRSIFHNCEIFVI 218 (343)
T ss_pred E-ccc-----eeEEEEccEEEEe
Confidence 5 333 6789999999854
|
|
| >smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses | Back alignment and domain information |
|---|
Probab=83.31 E-value=16 Score=27.09 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=49.9
Q ss_pred eccccEEEEeEEEeCCC---CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEe-eEEecCCceee
Q 038762 153 LGCRNVNVWNVRLREPA---YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITR-VQIDTGDDAIC 223 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~---~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n-~~i~~gDD~i~ 223 (268)
..+.+..+++-.+.+.. .+|+.+..+.+..+.+..+. .. .. .+|++++...+..+.+ .......|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 66777778888777763 78999998888777777776 21 12 8999999888888887 55555666664
|
|
| >PLN02488 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=83.16 E-value=14 Score=34.59 Aligned_cols=83 Identities=13% Similarity=-0.022 Sum_probs=59.9
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| +
T Consensus 278 Tv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G-----yQDTLy~~~-~RqyyrdC~I~GtVDFI-F 350 (509)
T PLN02488 278 TVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG-----YQDALYPHR-DRQFYRECFITGTVDFI-C 350 (509)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----cCcceeeCC-CCEEEEeeEEeeccceE-e
Confidence 334457899999999998643 233333 46789999999997 556565443 35688999999876766 3
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||++...
T Consensus 351 G~-----a~avFq~C~I~sr 365 (509)
T PLN02488 351 GN-----AAAVFQFCQIVAR 365 (509)
T ss_pred cc-----eEEEEEccEEEEe
Confidence 33 7899999999853
|
|
| >PLN02468 putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=83.05 E-value=11 Score=36.06 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=58.2
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~-~rq~y~~C~I~GtvDFI-FG 412 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA-----FQDTLYAHA-QRQFYRECNIYGTVDFI-FG 412 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe-----ccchhccCC-CceEEEeeEEeccccee-ec
Confidence 344568999999999986432 3333 357889999999997 455555444 34568999999866665 33
Q ss_pred CCCCCeecEEEEceEEec
Q 038762 226 TYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~ 243 (268)
. ....|+||.+..
T Consensus 413 ~-----a~avfq~c~i~~ 425 (565)
T PLN02468 413 N-----SAVVFQNCNILP 425 (565)
T ss_pred c-----ceEEEeccEEEE
Confidence 3 788999999974
|
|
| >PLN02745 Putative pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=81.70 E-value=18 Score=34.79 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=59.7
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| +
T Consensus 366 T~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-F 438 (596)
T PLN02745 366 TFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG-----YQDTLYAQT-HRQFYRSCVITGTIDFI-F 438 (596)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee-----cccccccCC-CcEEEEeeEEEeeccEE-e
Confidence 334478999999999999643 12322 347889999999997 455554443 35688999999876655 4
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||++...
T Consensus 439 G~-----a~avf~~C~i~~~ 453 (596)
T PLN02745 439 GD-----AAAIFQNCLIFVR 453 (596)
T ss_pred cc-----eeEEEEecEEEEe
Confidence 33 7889999999853
|
|
| >PLN02484 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=81.67 E-value=14 Score=35.51 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=59.3
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. ..+...+.+|++.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 353 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI- 425 (587)
T PLN02484 353 ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG-----YQDTLYVHS-NRQFFRECDIYGTVDFI- 425 (587)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec-----cCcccccCC-CcEEEEecEEEecccee-
Confidence 3445568999999999998643 233333 46789999999997 555555444 34578899999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||+++.
T Consensus 426 FG~-----a~avfq~C~i~~ 440 (587)
T PLN02484 426 FGN-----AAVVLQNCSIYA 440 (587)
T ss_pred ccc-----ceeEEeccEEEE
Confidence 333 678999999985
|
|
| >PLN02217 probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=81.49 E-value=10 Score=36.74 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=58.8
Q ss_pred EEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+ -++.+. ..+...+.+|+|.+ +.|-+.... .+-..++|.|++.=|-| ++
T Consensus 332 ~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG 404 (670)
T PLN02217 332 VAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG-----YQDTLYAHS-HRQFYRDCTISGTIDFL-FG 404 (670)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee-----ccchhccCC-CcEEEEeCEEEEeccEE-ec
Confidence 33458899999999999643 233333 46889999999997 555555444 35688999999866666 33
Q ss_pred CCCCCeecEEEEceEEec
Q 038762 226 TYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~ 243 (268)
. ...+|+||++..
T Consensus 405 ~-----a~avfq~C~I~~ 417 (670)
T PLN02217 405 D-----AAAVFQNCTLLV 417 (670)
T ss_pred C-----ceEEEEccEEEE
Confidence 3 678999999985
|
|
| >PLN02314 pectinesterase | Back alignment and domain information |
|---|
Probab=81.41 E-value=15 Score=35.23 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=59.3
Q ss_pred EEEEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 358 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G-----~QDTLy~~~-~rq~y~~C~I~GtvDFI- 430 (586)
T PLN02314 358 ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDA-----FQDTLYAHS-NRQFYRDCDITGTIDFI- 430 (586)
T ss_pred EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEe-----ccchheeCC-CCEEEEeeEEEecccee-
Confidence 33445689999999999986421 2333 356778999999997 556565544 34678899999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||.++.
T Consensus 431 FG~-----a~avf~~c~i~~ 445 (586)
T PLN02314 431 FGN-----AAVVFQNCNIQP 445 (586)
T ss_pred ccC-----ceeeeeccEEEE
Confidence 333 678999999985
|
|
| >PLN02313 Pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=80.69 E-value=16 Score=34.98 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=59.3
Q ss_pred EEEeccccEEEEeEEEeCCCCc----EEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAYW----CLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~----~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+. ++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-| +
T Consensus 356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g-----~QDTLy~~~~-rq~y~~c~I~GtvDFI-F 428 (587)
T PLN02313 356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA-----YQDTLYVHSN-RQFFVKCHITGTVDFI-F 428 (587)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEeecccee-c
Confidence 3445678999999999996432 33332 56789999999997 5555554443 4578999999876666 3
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||+++..
T Consensus 429 G~-----a~avfq~c~i~~r 443 (587)
T PLN02313 429 GN-----AAAVLQDCDINAR 443 (587)
T ss_pred cc-----eeEEEEccEEEEe
Confidence 33 7889999999843
|
|
| >PLN02990 Probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Probab=80.26 E-value=15 Score=35.05 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=57.8
Q ss_pred EeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 152 FLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 415 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG-----YQDTLYVHS-HRQFFRDCTVSGTVDFI-FGD 415 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----ccchhccCC-CcEEEEeeEEecccceE-ccC
Confidence 3457899999999998643 233333 46789999999997 555555444 34577999999876766 333
Q ss_pred CCCCeecEEEEceEEec
Q 038762 227 YTGPLYNLTATDSWIRT 243 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~ 243 (268)
....|+||+++.
T Consensus 416 -----a~avf~~C~i~~ 427 (572)
T PLN02990 416 -----AKVVLQNCNIVV 427 (572)
T ss_pred -----ceEEEEccEEEE
Confidence 678999999974
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 268 | ||||
| 2uve_A | 608 | Structure Of Yersinia Enterocolitica Family 28 Exop | 1e-11 | ||
| 3jur_A | 448 | The Crystal Structure Of A Hyperthermoactive Exopol | 4e-11 | ||
| 3eqn_A | 758 | Crystal Structure Of Beta-1,3-Glucanase From Phaner | 3e-04 |
| >pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 | Back alignment and structure |
|
| >pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 | Back alignment and structure |
|
| >pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (Lam55a) Length = 758 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 1e-70
Identities = 74/308 (24%), Positives = 112/308 (36%), Gaps = 56/308 (18%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNI 72
I +V DFGA DG +T AIQ AID+C PG C+V P G Y + + LKS +TLN+
Sbjct: 155 QIVNVRDFGAIDDGKTLNTKAIQQAIDSCKPG---CRVEIPAGTYKSGALWLKSDMTLNL 211
Query: 73 HEDATLLGGPRIEDYPEESSRWY-----------------VVLAENATDVGITGGGVVDG 115
A LLG +DYP + ++ ITG GV+DG
Sbjct: 212 QAGAILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITGSGVIDG 271
Query: 116 QAMKFVVTKNEIKNVMVSWNHTGACSG----------------------------DECRP 147
T + S A + R
Sbjct: 272 NGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDGMDLKNAYGQRRS 331
Query: 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNN 207
L+ G NV + +R PA+ + + N + ++ N DGI+ +S N
Sbjct: 332 SLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQ-TYDANNGDGIEFGNSQN 390
Query: 208 TVITRVQIDTGDDAICPKT-------YTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKA 260
++ DTGDD I P+ +++ R AI GS + +
Sbjct: 391 VMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAWIED 450
Query: 261 LVFDNITI 268
++ +N +
Sbjct: 451 ILAENNVM 458
|
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 | Back alignment and structure |
|---|
Score = 215 bits (548), Expect = 1e-67
Identities = 75/298 (25%), Positives = 121/298 (40%), Gaps = 46/298 (15%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNI 72
+++DFGA+GDG + + + AI+ ++ P G +LT I LKS++ L++
Sbjct: 26 REVNLLDFGARGDGRTDCSESFKRAIEELS-KQGGGRLIVPEGVFLTGPIHLKSNIELHV 84
Query: 73 HEDATLLGGPRIEDYPEESSRWY---------VVLAENATDVGITGGGVVDGQAM----- 118
+ P P +R+ +V A + +V ITG GV+DG A
Sbjct: 85 KGTIKFIPDPE-RYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWW 143
Query: 119 ------------------KFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNV 160
+ V E+ G RP V F CRNV V
Sbjct: 144 PWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLV 203
Query: 161 WNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD 220
V++ WC+H V +N IR++ I PNNDGID E +I + + DTGDD
Sbjct: 204 EGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTGDD 261
Query: 221 AICPKT--------YTGPLYNLTATDSWIRTKSS--AIKLGSASWFDFKALVFDNITI 268
++ K+ P + D+ + +++S + +GS + +V N
Sbjct: 262 SVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVY 319
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 1e-53
Identities = 61/254 (24%), Positives = 91/254 (35%), Gaps = 29/254 (11%)
Query: 20 FGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE---YLTATIRLKSHVTLNIHEDA 76
K D T+ IQ A++ C G VR G +L+ + L S V+L I +
Sbjct: 16 TTLKADSST-ATSTIQKALNNCDQGKA---VRLSAGSTSVFLSGPLSLPSGVSLLIDKGV 71
Query: 77 TLLGGPRIEDYPEESSRWYV-----------VLAENATDVGITGGGVVDGQAMKFVVTKN 125
TL + + S V + A + T+ GI G G +DGQ + K
Sbjct: 72 TLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKK 131
Query: 126 EIKNVMVSWNHTGACSGDEC---RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTF 182
W + PRL+ +N ++NV L + + D
Sbjct: 132 VS-----WWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFT 186
Query: 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTG--PLYNLTATDSW 240
+I N DGID S N I I TGDD + K Y G N++ +
Sbjct: 187 AWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHND 246
Query: 241 IRTKSSAIKLGSAS 254
T + +GS +
Sbjct: 247 FGT-GHGMSIGSET 259
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-35
Identities = 47/260 (18%), Positives = 84/260 (32%), Gaps = 39/260 (15%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTA---TIRLKSHVT 69
+++ +GA D AI SA AC G V P G Y T+ S
Sbjct: 19 KTCNILSYGAVADNSTDVGPAITSAWAACKSGGL---VYIPSGNYALNTWVTLTGGSATA 75
Query: 70 LNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKN 129
+ + D + V + T G V G +
Sbjct: 76 IQL--DGIIYRTGTASGNM-----IAVTDTTDFELFSSTSKGAVQGFGYVY--------- 119
Query: 130 VMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY 189
+ R++ + +V ++ L + + + C + + +M+I
Sbjct: 120 ----H------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIR 169
Query: 190 GDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249
G N DGID+ SN + V++ D+ + K P N+ + S
Sbjct: 170 GG-NEGGLDGIDVWGSNIW-VHDVEVTNKDECVTVK---SPANNILVESIYCNW-SGGCA 223
Query: 250 LGS-ASWFDFKALVFDNITI 268
+GS + D +V+ N+
Sbjct: 224 MGSLGADTDVTDIVYRNVYT 243
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 2e-33
Identities = 40/278 (14%), Positives = 83/278 (29%), Gaps = 42/278 (15%)
Query: 8 STTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSH 67
+ ++ V DFGA G+ D+ A+Q AI+A + P G Y I++KS+
Sbjct: 16 TQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSN 75
Query: 68 VTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEI 127
V + + D + + + V + + G G
Sbjct: 76 VHIRVESDVIIKPTWNGDGKN--HRLFEVGVNNIVRNFSFQGLG---------------- 117
Query: 128 KNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLRE-----------PAYWCLHIV 176
+ + + RN + N + + +
Sbjct: 118 -----NGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH 172
Query: 177 RCDNTFIRDMSI------YGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGP 230
N I + YG T D I + ++ ++++T + + G
Sbjct: 173 WSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNY-KQGG 231
Query: 231 LYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268
+ N+ A + +A+ G + N++
Sbjct: 232 IRNIFADNIRCSKGLAAVMFGPHF-MKNGDVQVTNVSS 268
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-26
Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 52/224 (23%)
Query: 16 SVIDFGAKGDGIHYDTA-------AIQSAIDAC----------PPGNK--PCQVRFPPGE 56
S+ DF G +Q+AID P G
Sbjct: 42 SLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIA 101
Query: 57 YLTATIRLKSHVTLNIHEDATLLGGPRIEDYP----EESSRWYVVLAENATDVGITGGGV 112
+ I+L+S+V L + + + P + P + N + I G GV
Sbjct: 102 GHSGIIQLRSNVNL--NIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGV 159
Query: 113 VDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP---- 168
VD +F + V F N +V + +
Sbjct: 160 VDFGGYEFGASSQ--------------------LRNGVAFGRSYNCSVTGITFQNGDVTW 199
Query: 169 ---AYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTV 209
W + C R +++ ++ + + + V
Sbjct: 200 AITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYVNCPYSGV 243
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-25
Identities = 52/298 (17%), Positives = 86/298 (28%), Gaps = 61/298 (20%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHED 75
S++DFG DG+ + AIQ+AIDA ++ P + TL I
Sbjct: 53 SILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQA---VGYIVGSTLLIPGG 109
Query: 76 ATLLGGPRIEDYPEESSRWYVVLA---------ENATDVGITGGGVVDGQAMKF------ 120
+ G + +S VL ++ +TG +G
Sbjct: 110 VNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSV 169
Query: 121 --VVTKNEIKNVMVSWNHTG------------ACSGDECRPRLVGFLGCRNVNVWNVRLR 166
V NVMV+ T AC CR L C +V+V +
Sbjct: 170 IRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFS 229
Query: 167 EPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN------NTVITRVQID---- 216
Y I+ + ++ I ++ N V +D
Sbjct: 230 RGNY---SADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHME 286
Query: 217 ------TGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268
G + + G + ++SWI + + F + F T
Sbjct: 287 QLDLDYCGSTGVVIENVNG---GFSFSNSWIAADADGTE-------QFTGIYFRTPTS 334
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 2e-24
Identities = 38/266 (14%), Positives = 77/266 (28%), Gaps = 34/266 (12%)
Query: 11 HIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTAT----IRLKS 66
I + K ++ A V F PG Y + S
Sbjct: 163 LIFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSS 222
Query: 67 HVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNE 126
+ A + G V A++V +G GV+ G+ ++V +
Sbjct: 223 VTWVYFAPGAYVKGA--------------VEFLSTASEVKASGHGVLSGE--QYVWYADP 266
Query: 127 IKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTF---- 182
+ + R + + V + P + +
Sbjct: 267 DEGYQKASGANNNGLR---MWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCR 323
Query: 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIR 242
+ D G F DG+++ T++ V T DD + N+ W
Sbjct: 324 VDDYKQVGAFY-GQTDGLEMY--PGTILQDVFYHTDDDGLKMYYSNVTARNIVM---WKE 377
Query: 243 TKSSAIKLGSASWFDFKALVFDNITI 268
+ + ++ G + + ++FDN+ +
Sbjct: 378 SVAPVVEFGWTPR-NTENVLFDNVDV 402
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-24
Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 31/229 (13%)
Query: 3 LLLLLSTTHIHIHSVIDFGAKGDGIHYDTAAIQSA-IDACPPGNKPCQVRFPPGEYLTAT 61
LL + D + TAA A C + P G L T
Sbjct: 6 SLLAYGLVAGATFASASPIEARDSCTFTTAAAAKAGKAKCSTITLN-NIEVPAGTTLDLT 64
Query: 62 IRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFV 121
L S + T Y E + + E+ T G G +++ ++
Sbjct: 65 -GLTSGTKVIFEGTTTF-------QYEEWAGPLISMSGEHITVTGA-SGHLINCDGARW- 114
Query: 122 VTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNT 181
W+ G + + +P+ G + ++ + ++ + + ++
Sbjct: 115 ------------WD--GKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDI 159
Query: 182 FIRDMSI----YGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226
D++I N D D+ +S I + + DD + +
Sbjct: 160 TFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS 208
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 5e-24
Identities = 43/280 (15%), Positives = 75/280 (26%), Gaps = 39/280 (13%)
Query: 14 IHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIH 73
++V DFGA GDG+ D A+IQ+AIDA V P GEY + L +
Sbjct: 2 DYNVKDFGALGDGVSDDRASIQAAIDAAYAAGG-GTVYLPAGEYRVSAAGEPGDGCLMLK 60
Query: 74 EDATLLGGPRIEDYPEESSRWYVVLAENATDVGITG-------GGVVDGQAMKFVVTK-- 124
+ L G E + + +DG
Sbjct: 61 DGVYLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDG 120
Query: 125 ----------NEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLH 174
++V + SG P N+ + + +
Sbjct: 121 WFNGYIPGGDGADRDVTIERVEVREMSGYGFDP----HEQTINLTIRDSVAHDNGLDGFV 176
Query: 175 IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDS--NNTVITRVQIDTGDDAICPK----TYT 228
++ + Y + G ++ S + + V G + +
Sbjct: 177 ADYLVDSVFENNVAYA----NDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLA 232
Query: 229 GPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268
P L ++ + L S + N I
Sbjct: 233 LPSNILIDGGAYYDNAREGVLLKMTS-----DITLQNADI 267
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 1e-21
Identities = 35/203 (17%), Positives = 57/203 (28%), Gaps = 28/203 (13%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
D AA +C + P G L T LKS T+ T Y E
Sbjct: 7 DAAAAIKGKASCT-SIILNGIVVPAGTTLDMT-GLKSGTTVTFQGKTTF-------GYKE 57
Query: 90 ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRL 149
N G G +D Q + W + +G + +P+
Sbjct: 58 WEGPLISFSGTNINING-ASGHSIDCQGSR--------------WWDSKGSNGGKTKPKF 102
Query: 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP----NNDGIDIEDS 205
++ N+ + + I + D+ I N D D+ S
Sbjct: 103 FYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSS 162
Query: 206 NNTVITRVQIDTGDDAICPKTYT 228
I+ + DD + + T
Sbjct: 163 TGVYISGANVKNQDDCLAINSGT 185
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 5e-21
Identities = 37/214 (17%), Positives = 63/214 (29%), Gaps = 38/214 (17%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL-TATIRLKSHVTLNI-H 73
SV +GAKGDG+ D A + AI++ V P G ++ + I+L S+ L
Sbjct: 24 SVKTYGAKGDGVTDDIRAFEKAIESG------FPVYVPYGTFMVSRGIKLPSNTVLTGAG 77
Query: 74 EDATLLGGPRIEDYPEESSRWYVVLAENATDVGITG-GGVVDGQAMKFVVTKNEIKNVMV 132
+ ++ D + I +DG + + I
Sbjct: 78 KRNAVIRFM---DSVGRGESLMYNENVTTGNENIFLSSFTLDGNNKRLGQGISGIGGS-- 132
Query: 133 SWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDF 192
R + C NV + ++ + + I D+
Sbjct: 133 -------------RESNLSIRACHNVYIRDIEAVDCTLHGIDIT----------CGGLDY 169
Query: 193 NTPNNDGIDIEDSNNTVITRVQI-DTGDDAICPK 225
+ S N I + GDD I
Sbjct: 170 PYLGDGTTAPNPSENIWIENCEATGFGDDGITTH 203
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 1e-19
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 28/202 (13%)
Query: 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYP 88
++ + +C V P G L T L + + T Y
Sbjct: 10 NGASSASKSKTSCS-TIVLSNVAVPSGTTLDLTK-LNDGTHVIFSGETTF-------GYK 60
Query: 89 EESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPR 148
E S V + T G G ++G ++ W+ G +G + +P+
Sbjct: 61 EWSGPLISVSGSDLTITG-ASGHSINGDGSRW-------------WDGEG-GNGGKTKPK 105
Query: 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSI----YGDFNTPNNDGIDIED 204
N + +++ + D ++D++I D N D DI
Sbjct: 106 FFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGT 165
Query: 205 SNNTVITRVQIDTGDDAICPKT 226
S I+ + DD + +
Sbjct: 166 STYVTISGATVYNQDDCVAVNS 187
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 29/201 (14%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
+ +I +C + P GE L + T+ + Y E
Sbjct: 7 SASEASESISSCSDVVLS-SIEVPAGETLDLS-DAADGSTITFEGTTSF-------GYKE 57
Query: 90 ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRL 149
++ T V + G V+DG ++ W+ G +G + +P+
Sbjct: 58 WKGPLIRFGGKDLT-VTMADGAVIDGDGSRW-------------WDSKG-TNGGKTKPKF 102
Query: 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSI----YGDFNTPNNDGIDIEDS 205
+ + + ++ + + + N + D +I D N DG DI +S
Sbjct: 103 MYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISES 161
Query: 206 NNTVITRVQIDTGDDAICPKT 226
I+ + DD I +
Sbjct: 162 TGVYISGATVKNQDDCIAINS 182
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 9e-19
Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 40/215 (18%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
+ + + +A+ +C + P G+ L + L++ T+ T +
Sbjct: 7 EYSGLATAVSSCKNIVLN-GFQVPTGKQLDLS-SLQNDSTVTFKGTTT---------FAT 55
Query: 90 ESSRWYVVLAENATDVGITG--GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRP 147
+ + + + +++ ITG G V+DG + W+ G+ S +P
Sbjct: 56 TADNDFNPIVISGSNITITGASGHVIDGNGQAY-------------WDGKGSNSNSNQKP 102
Query: 148 R--LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSI------------YGDFN 193
+V N + N+ ++ C I I + +
Sbjct: 103 DHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPA 162
Query: 194 TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT 228
N DG DI S++ + + DD + + T
Sbjct: 163 AHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT 197
|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 | Back alignment and structure |
|---|
Score = 71.5 bits (174), Expect = 3e-14
Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 22/222 (9%)
Query: 52 FPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWY-VVLAENATDVGITGG 110
FPPG Y +S + + + L Y + + + TG
Sbjct: 236 FPPGVYWMNQD--QSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGH 293
Query: 111 GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAY 170
G++ G+ + + ++ + S G + + P +
Sbjct: 294 GILSGENYVYQANAGD------NYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPF 347
Query: 171 WCLHIVRCDNT--FIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT 228
+ I D G F DG +I N+V+ V DDAI
Sbjct: 348 NTMDFNGNSGISSQISDYKQVGAFF-FQTDGPEI--YPNSVVHDVFWHVNDDAIKIYY-- 402
Query: 229 GPLYNLTATDS--WIRTKSSAIKLGSASWFDFKALVFDNITI 268
+ + + W I++G S D + D + +
Sbjct: 403 ---SGASVSRATIWKCHNDPIIQMGWTS-RDISGVTIDTLNV 440
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 9e-13
Identities = 28/204 (13%), Positives = 51/204 (25%), Gaps = 40/204 (19%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
D I G P G L + T+ + + D P
Sbjct: 10 DAKDIAGCSAVTLNG-----FTVPAGNTLV--LNPDKGATVTM--AGDITFAKTTLDGP- 59
Query: 90 ESSRWYVVLAENATDVGITGGG-VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPR 148
+ + + T + G + DG + W+ G + +P
Sbjct: 60 ----LFTI---DGTGINFVGADHIFDGNGALY-------------WDGKG-TNNGTHKPH 98
Query: 149 LVGFLGCRNVNVWNVRLREPAYWCLHI------VRCDNTFIRDMSIYGDFNTPNNDGIDI 202
+ + + + + D + D + N DG D+
Sbjct: 99 PFLKIKGSGT-YKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV 157
Query: 203 EDSNNTVITRVQIDTGDDAICPKT 226
+NN I + DD I
Sbjct: 158 -SANNVTIQNCIVKNQDDCIAIND 180
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 | Back alignment and structure |
|---|
Score = 60.4 bits (145), Expect = 2e-10
Identities = 36/215 (16%), Positives = 70/215 (32%), Gaps = 28/215 (13%)
Query: 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEY-LTATIRLKSHVTLN 71
SV GAKGDG DT AI++ + F G Y +T TI++ + +
Sbjct: 399 DFVSVRSQGAKGDGHTDDTQAIKNVFAKYAGCKI---IFFDAGTYIVTDTIQIPAGTQIV 455
Query: 72 IHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVM 131
+ ++G + + ++ V+ GVV+ M F ++
Sbjct: 456 GEVWSVIMGT--GSKFTDYNNPQPVIQVGAPGSS-----GVVEITDMIFTTRGPAAGAII 508
Query: 132 VSWN------HTGACSGDECRPRLVGFLG-------CRNVNVWNVRLREPAYWCLHIVRC 178
V WN A + + G C + LH+
Sbjct: 509 VEWNVHDPSGQQAAAGAWDTHLIIGGTAQSGLQVGQCPTSGAGGNNCF-ADFLGLHLTSG 567
Query: 179 DNTFIRDMSIY---GDFNTPNNDGIDIEDSNNTVI 210
+ ++ M ++ D ++ + I + + +
Sbjct: 568 SSAYLEGMWVWLADHDLDSGGSQQISLWSNGGIMS 602
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 | Back alignment and structure |
|---|
Score = 55.4 bits (132), Expect = 6e-09
Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 26/183 (14%)
Query: 19 DFGAKGDGIHYDTAAIQSAIDACPPGNKPCQ--------VRFPPGEY-LTATIRLKS--H 67
++GAKGDG DTAAIQ+AI+A + C V FPPG Y +++ + +
Sbjct: 54 NYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQ 113
Query: 68 VTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEI 127
+ + TLL P + +A D + GG F + +
Sbjct: 114 LIGDAKNLPTLLAAP-----------NFSGIALIDADPYLAGGAQYYVNQNNFFRS---V 159
Query: 128 KNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMS 187
+N ++ S ++ N+ + + + F+ D+
Sbjct: 160 RNFVIDLRQVSG-SATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLV 218
Query: 188 IYG 190
G
Sbjct: 219 FNG 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 100.0 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 100.0 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 100.0 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 100.0 | |
| 2x6w_A | 600 | Tail spike protein; viral protein, beta-helix, hyd | 100.0 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 100.0 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 100.0 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 100.0 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 100.0 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 100.0 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 100.0 | |
| 1h80_A | 464 | IOTA-carrageenase; hydrolase, IOTA-carrageenan dou | 100.0 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 100.0 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 100.0 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 100.0 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 100.0 | |
| 2vbk_A | 514 | Tailspike-protein; viral adhesion protein, viral p | 100.0 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 99.96 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 99.94 | |
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 99.79 | |
| 2iq7_A | 339 | Endopolygalacturonase; parallel beta helix, hydrol | 99.73 | |
| 1ia5_A | 339 | Polygalacturonase; glycosylhydrolase, hydrolase; H | 99.72 | |
| 1hg8_A | 349 | Endopolygalacturonase; hydrolase, pectin degradati | 99.72 | |
| 1nhc_A | 336 | Polygalacturonase I; beta-helix, hydrolase; HET: M | 99.72 | |
| 3jur_A | 448 | EXO-poly-alpha-D-galacturonosidase; beta-helix, ce | 99.69 | |
| 1czf_A | 362 | Polygalacturonase II; beta helix, hydrolase; HET: | 99.69 | |
| 1bhe_A | 376 | PEHA, polygalacturonase; family 28 glycosyl hydrol | 99.68 | |
| 1ogo_X | 574 | Dextranase; hydrolase, dextran degradation, glycos | 99.64 | |
| 1k5c_A | 335 | Endopolygalacturonase; beta helical structure, gly | 99.63 | |
| 2uvf_A | 608 | Exopolygalacturonase; GH28, pectin, cell WALL, hyd | 99.63 | |
| 1rmg_A | 422 | Rgase A, rhamnogalacturonase A; hydrolase, inverti | 99.61 | |
| 1x0c_A | 549 | Isopullulanase; glycoside hydrolase family 49, gly | 99.58 | |
| 3eqn_A | 758 | Glucan 1,3-beta-glucosidase; tandem beta-helix dom | 99.36 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 99.31 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 99.3 | |
| 1h80_A | 464 | IOTA-carrageenase; hydrolase, IOTA-carrageenan dou | 99.24 | |
| 3gqn_A | 772 | Preneck appendage protein; beta helix, beta barrel | 99.0 | |
| 3gq8_A | 609 | Preneck appendage protein; beta helix, viral prote | 99.0 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 98.84 | |
| 2pyg_A | 377 | Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli | 98.84 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 98.83 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 98.8 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 98.77 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 98.76 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 98.72 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 98.67 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 98.64 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 98.56 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 98.5 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 98.42 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 98.42 | |
| 1pxz_A | 346 | Major pollen allergen JUN A 1; parallel beta-helix | 98.4 | |
| 3zsc_A | 340 | Pectate trisaccharide-lyase; hydrolase; HET: ADA A | 98.34 | |
| 2x3h_A | 542 | K5 lyase, K5A lyase; bacteriophage, glycosaminogly | 98.28 | |
| 2qy1_A | 330 | Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca | 98.28 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 98.27 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 98.26 | |
| 1vbl_A | 416 | Pectate lyase 47; PL 47, thermostable, bacillus su | 98.2 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 98.17 | |
| 1idk_A | 359 | Pectin lyase A; signal, glycoprotein, multigene fa | 98.14 | |
| 3vmv_A | 326 | Pectate lyase; polysaccharide lyase family 1, beta | 98.13 | |
| 1qcx_A | 359 | Pectin lyase B; beta-helix protein, plant cell WAL | 98.11 | |
| 2o04_A | 399 | Pectate lyase, PL; hexasaccharide compound II, cal | 98.09 | |
| 1air_A | 353 | Pectate lyase C, PELC; pectate cleavage, pectinoly | 98.06 | |
| 1pe9_A | 361 | Pectate lyase A; parallel beta helix; 1.60A {Erwin | 98.05 | |
| 2x6w_A | 600 | Tail spike protein; viral protein, beta-helix, hyd | 97.97 | |
| 2inu_A | 410 | Insulin fructotransferase; right-handed parallel b | 97.96 | |
| 1ru4_A | 400 | Pectate lyase, PEL9A; parallel beta-helix; 1.60A { | 97.82 | |
| 3grh_A | 422 | YBHC, acyl-COA thioester hydrolase YBGC; beta-heli | 97.29 | |
| 1dbg_A | 506 | Chondroitinase B; beta helix, polysaccharide lyase | 96.79 | |
| 3t9g_A | 196 | Pectate lyase; PL3, parallel beta-helix; HET: GOL; | 96.37 | |
| 1pcl_A | 355 | Pectate lyase E; lyase (acting on polysaccharides) | 96.16 | |
| 2vbk_A | 514 | Tailspike-protein; viral adhesion protein, viral p | 96.07 | |
| 1ee6_A | 197 | Pectate lyase; parallel beta-helix, high-alkaline, | 94.35 | |
| 1xg2_A | 317 | Pectinesterase 1; protein-protein complex, beta he | 94.32 | |
| 1gq8_A | 319 | Pectinesterase; hydrolase, carboxylic ester hydrol | 93.63 | |
| 1ee6_A | 197 | Pectate lyase; parallel beta-helix, high-alkaline, | 93.37 | |
| 3t9g_A | 196 | Pectate lyase; PL3, parallel beta-helix; HET: GOL; | 91.46 | |
| 2nsp_A | 342 | Pectinesterase A; michaelis complex, hydrolase; HE | 88.5 | |
| 3b4n_A | 344 | Endo-pectate lyase; pectin, galacturonic acid, rig | 85.9 | |
| 3uw0_A | 364 | Pectinesterase; right-handed beta-helix, carbohydr | 85.66 |
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=382.99 Aligned_cols=253 Identities=30% Similarity=0.483 Sum_probs=217.5
Q ss_pred cCCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCC
Q 038762 8 STTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDY 87 (268)
Q Consensus 8 ~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~ 87 (268)
+...+++++|+||||++||.+|||+|||+||++|++ .++++|+||+|+|+++++.|+|+++|+++ |+|++++++++|
T Consensus 21 p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~-~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~~y 97 (448)
T 3jur_A 21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSK-QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPERY 97 (448)
T ss_dssp CCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH-HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGGGG
T ss_pred CCCCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh-cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHHHh
Confidence 346778999999999999999999999999999987 67899999999999999999999999999 999999999988
Q ss_pred -CCCCCce---------EEEEEEeeeccEEEeccEEecCC--cccccchhhcccceecccccCC----------------
Q 038762 88 -PEESSRW---------YVVLAENATDVGITGGGVVDGQA--MKFVVTKNEIKNVMVSWNHTGA---------------- 139 (268)
Q Consensus 88 -~~~~~~~---------~~i~~~~~~nv~I~G~G~i~g~g--~~~~~~~~~~~~~~~~~~~~~~---------------- 139 (268)
|....+| .+|++.+++||+|+|.|+|||+| ..||....... ..|.+...
T Consensus 98 ~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~ 174 (448)
T 3jur_A 98 LPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKD---FGWKEGLPNQQEDVKKLKEMAERG 174 (448)
T ss_dssp CSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGG---GTCCTTSCCSHHHHHHHHHHHHHT
T ss_pred CcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhccccc---ccccccccccccchhhhhhhhccc
Confidence 4433333 36788999999999999999999 88997433110 00111000
Q ss_pred --------CCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEE
Q 038762 140 --------CSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVIT 211 (268)
Q Consensus 140 --------~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~ 211 (268)
......||++|.|.+|+|++|++++++|++.|++++..|+|++|++++|.++ ++++||||+.+|++|+|+
T Consensus 175 ~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~ 252 (448)
T 3jur_A 175 TPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE 252 (448)
T ss_dssp CCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEE
T ss_pred CcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEE
Confidence 1234568999999999999999999999999999999999999999999986 689999999999999999
Q ss_pred eeEEecCCceeeecCCC--------CCeecEEEEceEE--ecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTYT--------GPLYNLTATDSWI--RTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~~--------~~~~nv~v~n~~~--~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
||.|.++||||++|++. .+++||+|+||++ ...++||+|||+....++||+|+|++|
T Consensus 253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~ 319 (448)
T 3jur_A 253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVY 319 (448)
T ss_dssp SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEE
T ss_pred eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEE
Confidence 99999999999999973 4699999999999 444669999999888999999999875
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=340.68 Aligned_cols=241 Identities=23% Similarity=0.314 Sum_probs=206.0
Q ss_pred cCCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECC---CeEEEeeEEecCceEEEEcCCeeEEeCCCC
Q 038762 8 STTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPP---GEYLTATIRLKSHVTLNIHEDATLLGGPRI 84 (268)
Q Consensus 8 ~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~---G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~ 84 (268)
.+..+..|+|++|| .+|+|+|||+||++|++ |++|+||| |+|+.+++.|+|+++|++++||+|+++.++
T Consensus 8 ~p~~p~~~~v~~~G-----~~~dT~aiq~Ai~ac~~---Gg~v~~~~~~~g~yl~g~i~l~s~vtL~l~~Ga~L~~s~~~ 79 (376)
T 1bhe_A 8 EPKTPSSCTTLKAD-----SSTATSTIQKALNNCDQ---GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNA 79 (376)
T ss_dssp CCCCCCEEEEEECC-----SSBCHHHHHHHHTTCCT---TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCS
T ss_pred CCCCCCeEEECCCC-----CCccHHHHHHHHHHhcc---CCcEEEECCCCceEEEeEEEECCCCEEEECCCeEEEeCCCH
Confidence 45556679999986 47999999999999987 66777665 799999999999999999999999999999
Q ss_pred CCCCCCCCc-----------eEEEEEEeeeccEEEeccEEecCC--------cccccchhhcccceecccccCCCCCCCC
Q 038762 85 EDYPEESSR-----------WYVVLAENATDVGITGGGVVDGQA--------MKFVVTKNEIKNVMVSWNHTGACSGDEC 145 (268)
Q Consensus 85 ~~~~~~~~~-----------~~~i~~~~~~nv~I~G~G~i~g~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (268)
.+|+..... ..++++.+.+||+|+|.|+|||+| +.||......+.. .....
T Consensus 80 ~~y~~~~~~~g~~~~~g~~~~~~I~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~~~~~----------~~~~~ 149 (376)
T 1bhe_A 80 KSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK----------KLKQN 149 (376)
T ss_dssp GGGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHH----------TCEEC
T ss_pred HHCcCCCccccccccCCCCcccEEEEECCEeEEEEeCEEEECCCCcccCCCcccccccccccccc----------CccCC
Confidence 888764321 246678899999999999999999 4688643221100 00124
Q ss_pred CceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
+|.+|.|.+|+|++|++++++|++.|++.+..|++++|++++|.++..++++||||+++|++|+|+||.|.++||||++|
T Consensus 150 rp~~i~~~~~~nv~I~~iti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaik 229 (376)
T 1bhe_A 150 TPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK 229 (376)
T ss_dssp CCCSEEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEE
T ss_pred CCeEEEEEcceEEEEEeEEEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCEEecCCCeEEEc
Confidence 78999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CC--CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 226 TY--TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 226 s~--~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
++ ..+++||+|+||+|.. .||++|||+.. .++||+|+|++|
T Consensus 230 s~~~~~~s~nI~I~n~~~~~-ghGisiGSe~~-~v~nV~v~n~~~ 272 (376)
T 1bhe_A 230 AYKGRAETRNISILHNDFGT-GHGMSIGSETM-GVYNVTVDDLKM 272 (376)
T ss_dssp ECTTSCCEEEEEEEEEEECS-SSCEEEEEEES-SEEEEEEEEEEE
T ss_pred ccCCCCCceEEEEEeeEEEc-cccEEeccCCc-cEeeEEEEeeEE
Confidence 73 3589999999999987 57899999876 899999999875
|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-47 Score=353.76 Aligned_cols=255 Identities=29% Similarity=0.436 Sum_probs=200.9
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCC
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYP 88 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~ 88 (268)
.+.++.++|+||||++||.+|||+|||+||++|+. +++|+||+|+|+++++.|+|+++|++++||+|+++.++.+|+
T Consensus 151 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~c~~---g~~v~vP~G~y~~g~i~lks~v~L~l~~gatL~~s~d~~~y~ 227 (608)
T 2uvf_A 151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKP---GCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSENPDDYP 227 (608)
T ss_dssp CCCCCEEEGGGGTCCSSSSCCCHHHHHHHHHTCCT---TEEEEECSEEEEECCEECCSSEEEEECTTEEEEECSCGGGSC
T ss_pred ccCCCEEecccccccCCCCccCHHHHHHHHHhcCC---CCEEEECCCceEecceeccCceEEEecCCcEEEecCCHHHCc
Confidence 45677999999999999999999999999999976 899999999999999999999999999999999999988886
Q ss_pred CC-----CC--c--eEEEEEEe--------eeccEEEeccEEecCCcccccchhh--ccc-ceecccccCCCC-------
Q 038762 89 EE-----SS--R--WYVVLAEN--------ATDVGITGGGVVDGQAMKFVVTKNE--IKN-VMVSWNHTGACS------- 141 (268)
Q Consensus 89 ~~-----~~--~--~~~i~~~~--------~~nv~I~G~G~i~g~g~~~~~~~~~--~~~-~~~~~~~~~~~~------- 141 (268)
.. .. . ..+|++.+ ++||+|+|.|+|||+|..||..... ..+ ....|.....|.
T Consensus 228 ~~~~~~~~~~~~~~~~lI~~~~~~~~~~g~~~ni~I~G~GtIDG~G~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~ 307 (608)
T 2uvf_A 228 AGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITGSGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGIL 307 (608)
T ss_dssp EEECSSTTCCSCEECCSEEECCSSCCCTTSEEEEEEESSCEEECCCBCEEEEEEEECTTSCEEEEECCCCTTTHHHHBSH
T ss_pred CcceeeeccccccccceEEeeccccccccceeeEEEEeeEEEcCcccccccccccccccccccccccccccccccccccc
Confidence 31 11 1 13666666 7999999999999999888743210 000 001111100110
Q ss_pred -----------C-------CCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec
Q 038762 142 -----------G-------DECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE 203 (268)
Q Consensus 142 -----------~-------~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~ 203 (268)
+ ...||++|.|.+|+|++|+|++++|++.|++++..|+|++|+++++.. ..++++||||+.
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~~~nv~i~~v~i~~-~~~~NtDGidi~ 386 (608)
T 2uvf_A 308 AKNQVEKAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQT-YDANNGDGIEFG 386 (608)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHSSCCSEEEESEEEEEEESCEEECCSSCSEEEESCEEEEEESCEEEC-TTCTTCCSEEEE
T ss_pred cccccccccccccccccccccCCCeEEEEEeeeeEEEeCcEEecCCCCEEEEecCCCEEEeeEEEcC-CCCCCCCeEEec
Confidence 0 013889999999999999999999999999999999999999999864 557899999999
Q ss_pred CcccEEEEeeEEecCCceeeecCCC-------CCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeE
Q 038762 204 DSNNTVITRVQIDTGDDAICPKTYT-------GPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 204 ~~~~v~I~n~~i~~gDD~i~i~s~~-------~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
+|++|+|+||.|.++||||+++++. .+++||+|+||+|.+.+.++.|||+....++||+|+|++
T Consensus 387 ~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~~iGS~~~~~v~nI~v~n~~ 457 (608)
T 2uvf_A 387 NSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAWIEDILAENNV 457 (608)
T ss_dssp SCEEEEEESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSSCSEEEESCCTTCEEEEEEESCE
T ss_pred CCceEEEEeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCCCeEEEcccCCCCEEEEEEEeEE
Confidence 9999999999999999999998752 356777777777766543345666555556666665554
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-45 Score=327.52 Aligned_cols=223 Identities=20% Similarity=0.304 Sum_probs=192.3
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEee-EEec--CceEEEEcCCeeEEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTAT-IRLK--SHVTLNIHEDATLLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~-l~l~--s~~~l~~~~ga~l~~~~~~~~ 86 (268)
+..+.++|+||||++||.+|||+|||+||++|+. +++|+||+|+|++++ |.|+ ++++|+++ |+.+..+++
T Consensus 16 ~~~~~~~V~~~GA~~dg~tddT~Aiq~Ai~ac~~---g~~V~vP~G~Yli~~~l~l~g~s~v~l~l~-G~~l~~~~~--- 88 (422)
T 1rmg_A 16 GATKTCNILSYGAVADNSTDVGPAITSAWAACKS---GGLVYIPSGNYALNTWVTLTGGSATAIQLD-GIIYRTGTA--- 88 (422)
T ss_dssp HHHCEEEGGGGTCCCSSSSBCHHHHHHHHHHHTB---TCEEEECSSEEEECSCEEEESCEEEEEEEC-SEEEECCCC---
T ss_pred cCCcEEEeeeccccCCCCcccHHHHHHHHHHCCC---CCEEEECCCeEEeCCceeecCCCeEEEEEc-CcEEcccCC---
Confidence 4467999999999999999999999999999965 889999999999985 9998 78999998 676665332
Q ss_pred CCCCCCceEE-EEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEE
Q 038762 87 YPEESSRWYV-VLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRL 165 (268)
Q Consensus 87 ~~~~~~~~~~-i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i 165 (268)
...|.. +...+.+++.|+|.|+|||+|..||.. +..+|.++++.+|+|++|+++++
T Consensus 89 ----~~~~~~~~~~~~~~~i~i~G~G~IdG~G~~~w~~-------------------~~~rp~~i~~~~~~nv~I~~iti 145 (422)
T 1rmg_A 89 ----SGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAE-------------------GTYGARILRLTDVTHFSVHDIIL 145 (422)
T ss_dssp ----SSEEEEEEEEEEEEEECSSSCCEEECCTHHHHTT-------------------TCCCCEEEEEEEEEEEEEEEEEE
T ss_pred ----CCceEEEEecCceeEEeeccCEEEECCcchhhcC-------------------CCCCceEEEEcccceEEEECeEE
Confidence 134543 355777788888999999999999842 11378999999999999999999
Q ss_pred eCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCC
Q 038762 166 REPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 166 ~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~ 245 (268)
+|++.|++++..|+|++|+|++|.+ .+++++||||+.+ ++|+|+||.|.++||||++++ +++||+|+||++...
T Consensus 146 ~nsp~~~i~i~~~~nv~I~n~~I~~-~d~~ntDGidi~~-~nV~I~n~~i~~gDD~Iai~s---~~~nI~I~n~~~~~~- 219 (422)
T 1rmg_A 146 VDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKS---PANNILVESIYCNWS- 219 (422)
T ss_dssp ECCSSCSEEEEEEEEEEEEEEEEEC-CSSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEE---EEEEEEEEEEEEESS-
T ss_pred ECCCceEEEEeCcCCEEEEeEEEEC-CCCCCCccEeecC-CeEEEEeeEEeCCCCeEEeCC---CCcCEEEEeEEEcCC-
Confidence 9999999999999999999999998 4567999999999 999999999999999999999 789999999998774
Q ss_pred ccEEeeeee-eeeEEeEEEEeeEC
Q 038762 246 SAIKLGSAS-WFDFKALVFDNITI 268 (268)
Q Consensus 246 ~gi~ig~~~-~~~~~ni~~~ni~i 268 (268)
+||+|||+. ...++||+|+|++|
T Consensus 220 ~GisIGS~g~~~~v~nV~v~n~~~ 243 (422)
T 1rmg_A 220 GGCAMGSLGADTDVTDIVYRNVYT 243 (422)
T ss_dssp SEEEEEEECTTEEEEEEEEEEEEE
T ss_pred cceeecccCCCCcEEEEEEEeEEE
Confidence 589998864 45788888888875
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=306.94 Aligned_cols=215 Identities=19% Similarity=0.189 Sum_probs=181.3
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC-eEEE------------eeEEecCceEEEEcCCe
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLT------------ATIRLKSHVTLNIHEDA 76 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G-~Y~~------------~~l~l~s~~~l~~~~ga 76 (268)
..++.++|+||||++| ||+|||+||++|++ .++++|+||+| +|++ +++.|+|+++|++++
T Consensus 47 ~~~~~~nV~dfGA~gD----dT~AIqkAIdaCs~-~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~LkSnVtL~LdG-- 119 (600)
T 2x6w_A 47 HCDPSGNVIQPGPNVD----SRQYLQAAIDYVSS-NGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEG-- 119 (600)
T ss_dssp CBCTTSCBCCCCTTCC----CHHHHHHHHHHHHH-TTCEEEEECTTCEEEECSCCCGGGGGGTEEEECCTTEEEEECS--
T ss_pred CCCcEEeeecCCCCcc----CHHHHHHHHHHhhh-cCCCEEEECCCCEEEecccccccccccccceEEcCceEEeeec--
Confidence 3456899999999998 89999999999987 78999999999 9999 899999999999993
Q ss_pred eEEeCCCCCCCCCC---CCce-EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEE
Q 038762 77 TLLGGPRIEDYPEE---SSRW-YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGF 152 (268)
Q Consensus 77 ~l~~~~~~~~~~~~---~~~~-~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (268)
+|+++.++++|+.. ..+| .++++.+++||+|+|.|+|||+|..||.... |. ..+|. +.+
T Consensus 120 tL~as~d~~~yp~~~~v~~~w~slI~~~~~~NItItG~GtIDGqG~~wW~~~~--------~~--------~~RP~-l~f 182 (600)
T 2x6w_A 120 RIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASSQ--------LR--------NGVAF-GRS 182 (600)
T ss_dssp EEEECGGGTTSCEEEEECCSSSSGGGCCCEEEEEEESSCEEECTTCCCSSTTC--------CE--------EEEEC-CSE
T ss_pred EEEEcCChHHCcccccccccccceEEEecceeEEEecceeeeCCccccccccc--------cC--------CCCCE-EEE
Confidence 99999999998652 2344 3456789999999999999999999995211 10 02466 778
Q ss_pred eccccEEEEeEEEeCC-CCcEEEE---eeeecEEEEeEE----EEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 153 LGCRNVNVWNVRLREP-AYWCLHI---VRCDNTFIRDMS----IYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~-~~~~i~~---~~~~nv~i~~~~----i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
.+|+ |++++++|+ +.|++++ ..|+|++|+|++ |.+ ++|+||| |+|+||.|.++||||++
T Consensus 183 ~~c~---I~GITi~NSDP~w~I~iG~~~~c~NVtI~nvtfi~aI~s---spNTDGI-------V~I~nc~I~tGDDCIAI 249 (600)
T 2x6w_A 183 YNCS---VTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNS---SVNADHS-------TVYVNCPYSGVESCYFS 249 (600)
T ss_dssp EEEE---EESCEEESCCCSCSEEECBTTBEEEEEEESCEEECCCCC---SSCCCEE-------EEEECSSSEEEESCEEE
T ss_pred eeeE---EeCeEEECCCCccEEEeCCCCCcccEEEeCeEEcceEec---CCCCCEE-------EEEEeeEEecCCcEEEE
Confidence 8888 999999999 9999999 999999999999 776 6899999 99999999999999999
Q ss_pred -cCCCCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEe
Q 038762 225 -KTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 225 -~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~n 265 (268)
|++. ..++.++ ++...++||+|||+..+.++||+++|
T Consensus 250 ~KSGs--~~ni~~e--~~~~GHgGISIGSe~~ggV~NV~V~N 287 (600)
T 2x6w_A 250 MSSSF--ARNIACS--VQLHQHDTFYRGSTVNGYCRGAYVVM 287 (600)
T ss_dssp CCCTT--HHHHEEE--EEECSSSEEEESCEEEEESEEEEEEE
T ss_pred ecCCC--cCCeEEE--EEcCCCCcEEecccccCcEEEEEEEE
Confidence 9964 2456666 56676779999998776666666665
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=284.65 Aligned_cols=211 Identities=15% Similarity=0.231 Sum_probs=177.5
Q ss_pred eeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeE-EecCceEEEEcCCeeEEeCCCCCCCCCCC
Q 038762 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATI-RLKSHVTLNIHEDATLLGGPRIEDYPEES 91 (268)
Q Consensus 13 ~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l-~l~s~~~l~~~~ga~l~~~~~~~~~~~~~ 91 (268)
+.|+|++ ++|||+|+++|+. .++++|+||+|+|+ .+ .|+++++|+++ +++.+. ...|.
T Consensus 28 ~~Ctv~~-----------~~aiq~ai~~c~~-~~g~~v~vP~G~~l--~l~~l~~~~~l~~~--g~~~~~--~~~w~--- 86 (362)
T 1czf_A 28 DSCTFTT-----------AAAAKAGKAKCST-ITLNNIEVPAGTTL--DLTGLTSGTKVIFE--GTTTFQ--YEEWA--- 86 (362)
T ss_dssp CEEEESS-----------HHHHHHHGGGCSE-EEEESCEECTTCCE--EECSCCTTCEEEEE--SEEEEC--CCCSC---
T ss_pred CEEEECC-----------HHHHHHHHHHhhc-cCCCEEEECCCEEE--EeeccCCCeEEEEe--CcEEec--cccCC---
Confidence 5688875 6899999999987 67889999999997 34 57889999998 344442 12332
Q ss_pred CceEEEEEEeeeccEEEe--ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC
Q 038762 92 SRWYVVLAENATDVGITG--GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA 169 (268)
Q Consensus 92 ~~~~~i~~~~~~nv~I~G--~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~ 169 (268)
..| +.+ ..+||+|+| .|+|||+|..||..+.. ....||+++++.+|+|++|++++++|+|
T Consensus 87 g~~--i~~-~~~nv~I~G~~~g~IdG~G~~~w~~~~~---------------~~~~rP~~i~~~~~~nv~i~~iti~nsp 148 (362)
T 1czf_A 87 GPL--ISM-SGEHITVTGASGHLINCDGARWWDGKGT---------------SGKKKPKFFYAHGLDSSSITGLNIKNTP 148 (362)
T ss_dssp CCS--EEE-EEESCEEEECTTCEEECCGGGTCCSCTT---------------SSSCCCCCEEEEEEETEEEESCEEECCS
T ss_pred CcE--EEE-eCccEEEEcCCCcEEECCCchhhcccCC---------------CCCCCCeEEEEeecccEEEEEEEEecCC
Confidence 233 344 559999999 69999999999974321 1245899999999999999999999999
Q ss_pred CcEEEEeeeecEEEEeEEEEcCCC----CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCC
Q 038762 170 YWCLHIVRCDNTFIRDMSIYGDFN----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 170 ~~~i~~~~~~nv~i~~~~i~~~~~----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~ 245 (268)
.|++++. |+|++|++++|.++.+ ++++||||+.+|++|+|+||++.++||||++|+ .+||+|+||++.++
T Consensus 149 ~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks----g~nI~i~n~~~~~g- 222 (362)
T 1czf_A 149 LMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS----GENIWFTGGTCIGG- 222 (362)
T ss_dssp SCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS----EEEEEEESCEEESS-
T ss_pred ccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCCCEEEEeC----CeEEEEEEEEEeCC-
Confidence 9999999 9999999999998643 789999999999999999999999999999999 39999999999984
Q ss_pred ccEEeeee---eeeeEEeEEEEeeEC
Q 038762 246 SAIKLGSA---SWFDFKALVFDNITI 268 (268)
Q Consensus 246 ~gi~ig~~---~~~~~~ni~~~ni~i 268 (268)
|||+|||+ ....++||+|+|++|
T Consensus 223 hGisiGS~G~~~~~~v~nV~v~n~~~ 248 (362)
T 1czf_A 223 HGLSIGSVGDRSNNVVKNVTIEHSTV 248 (362)
T ss_dssp CCEEEEEECSSSCCEEEEEEEEEEEE
T ss_pred ceeEEeeccccCCCCEEEEEEEeeEE
Confidence 68999996 557899999999875
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=280.52 Aligned_cols=208 Identities=19% Similarity=0.247 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeE-EecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATI-RLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGI 107 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l-~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I 107 (268)
.+|+|||+|+++|++ .++++|+||+|+|+. | .|+++++|++++ .+.+. ...|. . .++.+.. +||+|
T Consensus 6 ~dt~aiq~ai~~c~~-~~g~~v~vP~G~~~~--l~~l~~~~~l~~~g--~~~~~--~~~w~---g--~~i~~~~-~nv~I 72 (339)
T 2iq7_A 6 TDAAAAIKGKASCTS-IILNGIVVPAGTTLD--MTGLKSGTTVTFQG--KTTFG--YKEWE---G--PLISFSG-TNINI 72 (339)
T ss_dssp SCHHHHHHHGGGCSE-EEEESCEECTTCCEE--ECSCCTTCEEEEES--EEEEC--CCCSC---C--CSEEEEE-ESCEE
T ss_pred CCHHHHHHHHHHhhc-cCCCeEEECCCEEEE--eeccCCCeEEEEeC--cEEcc--ccccc---C--cEEEEEc-ccEEE
Confidence 468999999999988 778899999999973 4 568899999983 44442 12332 1 2334444 99999
Q ss_pred Eec--cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEe
Q 038762 108 TGG--GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRD 185 (268)
Q Consensus 108 ~G~--G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~ 185 (268)
+|. |+|||+|..||...... ....+|++|.+.+|+|++|++++++|+|.|++++..|++++|++
T Consensus 73 ~G~~gG~IdG~G~~~w~~~~~~--------------~~~~rp~~i~~~~~~nv~i~giti~nsp~~~i~i~~~~nv~i~~ 138 (339)
T 2iq7_A 73 NGASGHSIDCQGSRWWDSKGSN--------------GGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYD 138 (339)
T ss_dssp EECTTCEEECCGGGTCCSCGGG--------------SSSCCCCCEEEEEEEEEEEECCEEECCSSCCEEEESCEEEEEES
T ss_pred EcCCCCEEECCccccccccccc--------------CCCCCCeEEEEeeeCcEEEEEEEEEeCCcceEEEeccCCEEEEE
Confidence 997 79999999999753321 12358999999999999999999999999999999999999999
Q ss_pred EEEEcCCC----CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeee---eeeeeE
Q 038762 186 MSIYGDFN----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGS---ASWFDF 258 (268)
Q Consensus 186 ~~i~~~~~----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~---~~~~~~ 258 (268)
++|.++.+ ++++||||+.+|++|+|+||+|.++||||++|+ .+||+|+||++.++ +||+||| +....+
T Consensus 139 ~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDciaiks----g~nI~i~n~~~~~g-hGisiGSlg~~~~~~v 213 (339)
T 2iq7_A 139 VIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINS----GTNITFTGGTCSGG-HGLSIGSVGGRSDNTV 213 (339)
T ss_dssp CEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS----EEEEEEESCEEESS-CCEEEEEESSSSCCEE
T ss_pred EEEECCccccccCCCCCcEEEcCcceEEEEecEEecCCCEEEEcC----CccEEEEeEEEECC-ceEEECcCCcccCCCE
Confidence 99998743 789999999999999999999999999999999 48888888888874 5788877 334678
Q ss_pred EeEEEEeeEC
Q 038762 259 KALVFDNITI 268 (268)
Q Consensus 259 ~ni~~~ni~i 268 (268)
+||+|+|++|
T Consensus 214 ~nV~v~n~~~ 223 (339)
T 2iq7_A 214 KTVTISNSKI 223 (339)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEeeEE
Confidence 8888888764
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=277.35 Aligned_cols=209 Identities=17% Similarity=0.275 Sum_probs=171.2
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeE-EecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEE
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATI-RLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGIT 108 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l-~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 108 (268)
+|+|||+|+++|++ .++++|+||+|+|+. + .|+++++|.++ | .+.+.. ..|.. . .++.+ ..+||+|+
T Consensus 7 ~t~aiq~ai~~c~~-~gg~~v~vP~G~~l~--l~~l~~~~~l~~~-g-~~~~~~--~~w~~--g--~~i~~-~~~ni~I~ 74 (349)
T 1hg8_A 7 EYSGLATAVSSCKN-IVLNGFQVPTGKQLD--LSSLQNDSTVTFK-G-TTTFAT--TADND--F--NPIVI-SGSNITIT 74 (349)
T ss_dssp SGGGHHHHHHHCSE-EEECCCEECTTCCEE--ETTCCTTCEEEEC-S-EEEECC--CCCTT--C--CSEEE-EEESCEEE
T ss_pred CHHHHHHHHHhccc-cCCCEEEECCCEEEE--eeccCCCeEEEEc-C-ceeccc--ccccC--C--ceEEE-ECccEEEE
Confidence 57999999999988 778899999999973 4 56889999998 3 344321 23311 2 23444 45999999
Q ss_pred e--ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEE-e-ccccEEEEeEEEeCCCCcEEEEeeeecEEEE
Q 038762 109 G--GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGF-L-GCRNVNVWNVRLREPAYWCLHIVRCDNTFIR 184 (268)
Q Consensus 109 G--~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~ 184 (268)
| .|+|||+|..||....... ..+.+|++|.+ . .|+|++|++++++|++.|++++..|++++|+
T Consensus 75 G~~~G~IdG~G~~ww~~~~~~~-------------~~~~rP~~i~~~~~~~~nv~I~giti~nsp~~~i~i~~~~nv~i~ 141 (349)
T 1hg8_A 75 GASGHVIDGNGQAYWDGKGSNS-------------NSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTIS 141 (349)
T ss_dssp ECTTCEEECCGGGTCCSCTTCT-------------TSCCCCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEEEEEE
T ss_pred ecCCCEEcCCcchhhhcccccC-------------CCCCCCeEEEEeecCcCcEEEEEEEEEcCCCceEEEeccCCEEEE
Confidence 9 6999999999997533210 11257889999 7 7889999999999999999999999999999
Q ss_pred eEEEEcCC-C-----------CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeee
Q 038762 185 DMSIYGDF-N-----------TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 185 ~~~i~~~~-~-----------~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
+++|.++. + ++++||||+.+|++|+|+||.+.++||||++|+ .+||+|+||++.++ +||+|||
T Consensus 142 ~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks----g~nI~i~n~~~~~g-hGisiGS 216 (349)
T 1hg8_A 142 GLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS----GTNIVVSNMYCSGG-HGLSIGS 216 (349)
T ss_dssp EEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS----EEEEEEEEEEEESS-CCEEEEE
T ss_pred EEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEecCCCeEEeeC----CeEEEEEeEEEeCC-cceEEcc
Confidence 99999853 2 589999999999999999999999999999999 48999999999874 5899988
Q ss_pred e---eeeeEEeEEEEeeEC
Q 038762 253 A---SWFDFKALVFDNITI 268 (268)
Q Consensus 253 ~---~~~~~~ni~~~ni~i 268 (268)
+ ....++||+|+|++|
T Consensus 217 ~G~~~~~~v~nV~v~n~~~ 235 (349)
T 1hg8_A 217 VGGKSDNVVDGVQFLSSQV 235 (349)
T ss_dssp ESSSSCCEEEEEEEEEEEE
T ss_pred ccccccCCEEEEEEEEEEE
Confidence 7 557888888888875
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=277.88 Aligned_cols=207 Identities=17% Similarity=0.293 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeE-EecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATI-RLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGI 107 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l-~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I 107 (268)
.+|+|||+|+++|++ .++++|+||+|+|+ .| .|+++++|.++ +++.+. ...|. . .++.+ ..+||+|
T Consensus 6 ~~t~aiq~ai~~c~~-~gg~~v~vP~G~~~--~l~~l~~~~~l~~~--g~~~~~--~~~w~---g--~li~~-~~~nv~I 72 (336)
T 1nhc_A 6 TSASEASESISSCSD-VVLSSIEVPAGETL--DLSDAADGSTITFE--GTTSFG--YKEWK---G--PLIRF-GGKDLTV 72 (336)
T ss_dssp SSHHHHHHHGGGCSE-EEEESCEECTTCCE--ECTTCCTTCEEEEE--SEEEEC--CCCSC---C--CSEEC-CEESCEE
T ss_pred CCHHHHHHHHHHhhc-cCCCeEEECCCEEE--EeeccCCCeEEEEe--ceEEcc--ccccc---C--cEEEE-ecCCEEE
Confidence 468999999999988 77889999999997 34 46788999998 344442 12332 1 23333 4599999
Q ss_pred Eec--cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEe
Q 038762 108 TGG--GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRD 185 (268)
Q Consensus 108 ~G~--G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~ 185 (268)
+|. |+|||+|..||...... ....+|++|.+.+|+|++|++++++|+|.|++++. |++++|++
T Consensus 73 ~G~~gG~IdG~G~~~w~~~~~~--------------~~~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~-~~nv~i~~ 137 (336)
T 1nhc_A 73 TMADGAVIDGDGSRWWDSKGTN--------------GGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVHLND 137 (336)
T ss_dssp EECTTCEEECCGGGTCCSCTTT--------------SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEE-EEEEEEES
T ss_pred EcCCCeEEECCccccccccCcC--------------CCCCCceEEEEeeeCcEEEEEEEEEeCCccEEEEE-eCCEEEEE
Confidence 997 79999999999743321 12458999999999999999999999999999999 99999999
Q ss_pred EEEEcCCC----CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeee---eeeeE
Q 038762 186 MSIYGDFN----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSA---SWFDF 258 (268)
Q Consensus 186 ~~i~~~~~----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~---~~~~~ 258 (268)
++|.++.+ ++++||||+.+|++|+|+||++.++||||++|+ .+||+|+||++.++ +||+|||. ....+
T Consensus 138 ~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~gDDciaiks----g~nI~i~n~~~~~g-hGisiGS~g~~~~~~v 212 (336)
T 1nhc_A 138 FTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINS----GESISFTGGTCSGG-HGLSIGSVGGRDDNTV 212 (336)
T ss_dssp CEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESS----EEEEEEESCEEESS-SEEEEEEESSSSCCEE
T ss_pred EEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEcCCCEEEEeC----CeEEEEEeEEEECC-cCceEccCccccCCCE
Confidence 99998754 789999999999999999999999999999999 48888888888874 57888884 34678
Q ss_pred EeEEEEeeEC
Q 038762 259 KALVFDNITI 268 (268)
Q Consensus 259 ~ni~~~ni~i 268 (268)
+||+|+|++|
T Consensus 213 ~nV~v~n~~~ 222 (336)
T 1nhc_A 213 KNVTISDSTV 222 (336)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEeeEE
Confidence 8888888875
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=276.67 Aligned_cols=207 Identities=16% Similarity=0.272 Sum_probs=171.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeE-EecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEE
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATI-RLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGIT 108 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l-~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 108 (268)
-++|||+|+++|++ .++++|+||+|+|+. | .|+++++|+++ +.+.+. ...|. . .++.+.. +||+|+
T Consensus 11 g~~aiq~ai~~c~~-~gg~~v~vP~G~~l~--l~~l~~~~~l~~~--g~~~~~--~~~w~---g--~li~~~~-~nv~I~ 77 (339)
T 1ia5_A 11 GASSASKSKTSCST-IVLSNVAVPSGTTLD--LTKLNDGTHVIFS--GETTFG--YKEWS---G--PLISVSG-SDLTIT 77 (339)
T ss_dssp HHHHHHHHGGGCSE-EEEESCEECTTCCEE--ECSCCTTCEEEEE--SEEEEC--CCCSC---C--CSEEEEE-ESCEEE
T ss_pred chHHHHHHHHHhhc-cCCCeEEECCCEEEE--eeccCCCeEEEEe--CcEEcc--ccccc---C--cEEEEEc-CcEEEE
Confidence 36899999999998 778899999999973 5 57899999998 344442 12332 1 2344444 999999
Q ss_pred ec--cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeE
Q 038762 109 GG--GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDM 186 (268)
Q Consensus 109 G~--G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~ 186 (268)
|. |+|||+|..||...... ....+|+++.+.+|+|++|++++++|+|.|++++..|++++|+++
T Consensus 78 G~~gG~IdG~G~~~w~~~~~~--------------~~~~rp~~i~~~~~~nv~i~~i~i~nsp~~~i~i~~~~nv~i~~~ 143 (339)
T 1ia5_A 78 GASGHSINGDGSRWWDGEGGN--------------GGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDI 143 (339)
T ss_dssp ECTTCEEECCGGGTCSSCTTT--------------SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEESC
T ss_pred cCCCeEEeCCCCccccccccC--------------CCCCCCeEEEEeecCcEEEEEEEEEcCCcceEEEecccCeEEeeE
Confidence 97 79999999999743321 124589999999999999999999999999999999999999999
Q ss_pred EEEcCCC----CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeee---eeeeEE
Q 038762 187 SIYGDFN----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSA---SWFDFK 259 (268)
Q Consensus 187 ~i~~~~~----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~---~~~~~~ 259 (268)
+|.++.+ ++++||||+.+|++|+|+||+|.++||||++|+ .+||+|+||++.++ +||+|||. ....++
T Consensus 144 ~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDcIaiks----g~nI~i~n~~~~~g-hGisiGS~g~~~~~~v~ 218 (339)
T 1ia5_A 144 TIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS----GENIYFSGGYCSGG-HGLSIGSVGGRSDNTVK 218 (339)
T ss_dssp EEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS----EEEEEEESCEEESS-SCEEEEEECSSSCCEEE
T ss_pred EEECCccccccCCCCCcEEecCCceEEEEeeEEEcCCCeEEEeC----CeEEEEEeEEEECC-ceEEECcCCcccCCCEE
Confidence 9998743 789999999999999999999999999999999 48899999988874 57888884 346788
Q ss_pred eEEEEeeEC
Q 038762 260 ALVFDNITI 268 (268)
Q Consensus 260 ni~~~ni~i 268 (268)
||+|+|++|
T Consensus 219 nV~v~n~~~ 227 (339)
T 1ia5_A 219 NVTFVDSTI 227 (339)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeeEE
Confidence 888888875
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=280.60 Aligned_cols=203 Identities=14% Similarity=0.188 Sum_probs=173.0
Q ss_pred HHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEe-
Q 038762 31 TAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITG- 109 (268)
Q Consensus 31 t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G- 109 (268)
++|||+ +++|++ .++++|+||+|+|+ .|.|+++++|+++ +++.++. ..|. .. ++.+. .+||+|+|
T Consensus 8 ~~aiq~-i~aC~~-~gg~~v~vP~G~~l--~l~l~~~~~l~~~--g~~~~~~--~~w~---~~--~i~~~-~~ni~I~G~ 73 (335)
T 1k5c_A 8 VDDAKD-IAGCSA-VTLNGFTVPAGNTL--VLNPDKGATVTMA--GDITFAK--TTLD---GP--LFTID-GTGINFVGA 73 (335)
T ss_dssp TTGGGG-CTTCSE-EEECCEEECTTCCE--EECCCTTCEEEEC--SCEEECC--CCSC---SC--SEEEE-EEEEEEECT
T ss_pred HHHhHH-HHhccc-CCCCEEEECCCEEE--EEEeCCCeEEEEe--ccEeccc--cccc---Cc--EEEEE-ccCEEEEeC
Confidence 589999 999988 77889999999997 5678899999998 3555532 2332 22 34444 59999999
Q ss_pred ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeec-EEEEeEEE
Q 038762 110 GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDN-TFIRDMSI 188 (268)
Q Consensus 110 ~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~n-v~i~~~~i 188 (268)
.|+|||+|..||...... ....||++|.|..|+ ++|++++++|+|.|++++..|++ ++|++++|
T Consensus 74 ~G~idG~G~~ww~~~~~~--------------~~~~rP~~i~~~~~~-v~i~giti~nsp~~~i~i~~~~n~v~i~~v~I 138 (335)
T 1k5c_A 74 DHIFDGNGALYWDGKGTN--------------NGTHKPHPFLKIKGS-GTYKKFEVLNSPAQAISVGPTDAHLTLDGITV 138 (335)
T ss_dssp TCEEECCGGGTCCSCTTT--------------SSSCCCCCSEEEEEE-EEEESCEEESCSSCCEEEEEEEEEEEEESCEE
T ss_pred ccEEcCChhHhhhccccc--------------CCCCCCeEEEEeceE-EEEEEEEEECCCcceEEEEccCCeEEEEEEEE
Confidence 599999999999743321 124589999999999 99999999999999999999999 99999999
Q ss_pred EcCCC-----CCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeeee-eeeEEeEE
Q 038762 189 YGDFN-----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS-WFDFKALV 262 (268)
Q Consensus 189 ~~~~~-----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~-~~~~~ni~ 262 (268)
.++.+ ++++||||+ +|++|+|+||.+.++||||++|+ .+||+|+||++..+ |||+|||+. ...++||+
T Consensus 139 ~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~gDDcIaiks----g~nI~i~n~~~~~g-hGisIGS~g~~~~v~nV~ 212 (335)
T 1k5c_A 139 DDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAIND----GNNIRFENNQCSGG-HGISIGSIATGKHVSNVV 212 (335)
T ss_dssp ECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEE----EEEEEEESCEEESS-CCEEEEEECTTCEEEEEE
T ss_pred ECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEcCCCEEEeeC----CeeEEEEEEEEECC-ccCeEeeccCCCCEEEEE
Confidence 98743 789999999 99999999999999999999999 39999999999984 689999986 68999999
Q ss_pred EEeeEC
Q 038762 263 FDNITI 268 (268)
Q Consensus 263 ~~ni~i 268 (268)
|+|++|
T Consensus 213 v~n~~~ 218 (335)
T 1k5c_A 213 IKGNTV 218 (335)
T ss_dssp EESCEE
T ss_pred EEeeEE
Confidence 999875
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=272.35 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=183.9
Q ss_pred CCCceeEE-eeeccccCCCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCC--C
Q 038762 9 TTHIHIHS-VIDFGAKGDGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPR--I 84 (268)
Q Consensus 9 ~~~~~~~~-v~dyga~~dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~--~ 84 (268)
....+.++ |+||||++||.+|||+|||+||++|++ . ++++|+||+|+|++++|.|+|+++|++++|++|+++.+ .
T Consensus 16 ~~~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac~~-~~ggg~V~vP~GtYl~g~I~lks~v~L~l~~GatL~~s~~td~ 94 (464)
T 1h80_A 16 TQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISR-KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWNGDG 94 (464)
T ss_dssp SCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHT-STTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEECCCTTC
T ss_pred CCCcceeeehhccCcCCCCCchhHHHHHHHHHHHhh-ccCCcEEEECCCeEEEeeEeccCceEEEEcCCcEEEeccCCCc
Confidence 34567788 999999999999999999999999976 5 68999999999999999999999999999999999763 3
Q ss_pred CCCCCCCCceEEEEE---EeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccE
Q 038762 85 EDYPEESSRWYVVLA---ENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNV 158 (268)
Q Consensus 85 ~~~~~~~~~~~~i~~---~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv 158 (268)
.+ |..+.. .+.+||+|+|.| +|||+|.. ..+|.+|.|.+|+|+
T Consensus 95 ~~-------y~~~~~~~~~~~~nItI~G~Gg~~~iDG~G~~------------------------~~rp~~i~~~~~~Nv 143 (464)
T 1h80_A 95 KN-------HRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR------------------------DKNLAVFKLGDVRNY 143 (464)
T ss_dssp SC-------EEEEEESSSSCEEEEEEEECTTCEEEECTTCS------------------------CCBEEEEEECSEEEE
T ss_pred cc-------CCceEeecccCccceEEECcCcceEEeCCCCC------------------------CCCceEEEEEeeccE
Confidence 33 233322 789999999999 89987753 136789999999999
Q ss_pred EEEeEEEeCCCCcE------------EEEeeeecEEEEeEEEEcCCCCCCCce-eeecCcccEEEEeeEEecCCceeeec
Q 038762 159 NVWNVRLREPAYWC------------LHIVRCDNTFIRDMSIYGDFNTPNNDG-IDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 159 ~I~~v~i~n~~~~~------------i~~~~~~nv~i~~~~i~~~~~~~~~DG-i~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
+|+|++++|+...+ +.+ .|+|++|+|+.|.++ +.++| ++...+++|+|+||.+.+ +.+|.++
T Consensus 144 ~I~gIti~n~w~ih~s~~V~i~NtDGi~i-~s~nV~I~n~~I~~g---ddgiGs~~~~~~~NV~V~n~~~~g-g~GIrIk 218 (464)
T 1h80_A 144 KISNFTIDDNKTIFASILVDVTERNGRLH-WSRNGIIERIKQNNA---LFGYGLIQTYGADNILFRNLHSEG-GIALRME 218 (464)
T ss_dssp EEEEEEEECCSCBSCSEEECEEEETTEEE-EEEEEEEEEEEEESC---CTTCEEEEESEEEEEEEEEEEEES-SEEEEEE
T ss_pred EEeeeEEeccceEeeceeeeeecCCCcee-eccCEEEeceEEecC---CCeEEecccCCEeEEEEEeeEEEC-CCEEEEE
Confidence 99999999954332 123 899999999999985 45678 778899999999999887 7777777
Q ss_pred CC--------CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 226 TY--------TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 226 s~--------~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
++ .+.++||+|+||+|.+..++|.|++.. ..++||+|+||++
T Consensus 219 tg~d~IG~~~~g~v~NI~~~Ni~~~nv~~~I~I~p~~-~~isnItfeNI~~ 268 (464)
T 1h80_A 219 TDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHF-MKNGDVQVTNVSS 268 (464)
T ss_dssp CCCHHHHHHTCCEEEEEEEEEEEEESSSEEEEEECTT-CBCCCEEEEEEEE
T ss_pred eCCceeccCCCCcEEEEEEEeEEEECCceeEEEeCCC-ceEeEEEEEEEEE
Confidence 65 368999999999999999999998543 3567777777763
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=272.07 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=156.7
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEE-eeEEecCceEEEEcC--CeeEEeCCCCC
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLT-ATIRLKSHVTLNIHE--DATLLGGPRIE 85 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~-~~l~l~s~~~l~~~~--ga~l~~~~~~~ 85 (268)
...++.++|+||||++||.+|||+|||+||++ +++|+||+|+|++ ++|.|+++++|++++ .++|+++++..
T Consensus 17 ~~~~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~------Gg~V~iP~GtYlis~~l~l~snv~L~g~g~~~t~L~~~~~~p 90 (609)
T 3gq8_A 17 ELKQFGVSVKTYGAKGDGVTDDIRAFEKAIES------GFPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDSVG 90 (609)
T ss_dssp HHCSSSEEGGGGTCCCEEEEECHHHHHHHHHT------SSCEEECSEEEEESSCEEECSSEEEEESCTTTEEEEECTTCC
T ss_pred hcCCcEEEeEecccCCCCCchhHHHHHHHHHc------CCEEEECCccEEEeCceEECCCcEEEEeeCCCCEEEeCCCCC
Confidence 34567899999999999999999999999994 3689999999999 899999999999985 37888765432
Q ss_pred CCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEE
Q 038762 86 DYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRL 165 (268)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i 165 (268)
.+.. ..+.++++.+.+||+|+|. +|||++..||.. |.. ....+|.+|.|.+|+|++|+++++
T Consensus 91 ~~~~--li~~lI~a~~~~NItItG~-TIDGNG~~~g~~----------~~~-----~g~~RP~lI~f~~c~NV~I~gVti 152 (609)
T 3gq8_A 91 RGES--LMYNENVTTGNENIFLSSF-TLDGNNKRLGQG----------ISG-----IGGSRESNLSIRACHNVYIRDIEA 152 (609)
T ss_dssp SSCC--SEEESCTTTCCEEEEEEEE-EEECCGGGGCSS----------CCC-----SSTTTTCSEEEESCEEEEEEEEEE
T ss_pred CCCc--eeeeeeeecccccEEEEee-EEECCccccCcc----------ccc-----CCCCCccEEEEEeeceEEEEeeEE
Confidence 2211 0011234578999999996 999999844321 110 123589999999999999999999
Q ss_pred eCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC------cccEEEEeeEEec-CCceeeecCCCCCeecEEEEc
Q 038762 166 REPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED------SNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATD 238 (268)
Q Consensus 166 ~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~------~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n 238 (268)
+|++.+++.+ .++.. + ||++.++ |++|+|+||.+++ +||||++++ ++||+|+|
T Consensus 153 ~NSp~~gI~I-------------~~~~~--N-DGid~DGi~fd~~S~NV~I~Nc~I~~tGDDcIaIks----seNI~I~N 212 (609)
T 3gq8_A 153 VDCTLHGIDI-------------TCGGL--D-YPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHH----SQYINILN 212 (609)
T ss_dssp ESCSSCSEEE-------------ECSSS--S-CCCCCTTCCCSSCCEEEEEESCEEESCSSCSEEECS----CEEEEEES
T ss_pred EeCCCCCeEE-------------eCCCC--C-ccccCCCccccccceeEEEEeeEEEecCCCEEEecC----CeeEEEEe
Confidence 9999855443 33322 2 5666655 8888888888844 888888876 78888888
Q ss_pred eEEecC-----CccEEeeeeeeeeEEeEEEEeeE
Q 038762 239 SWIRTK-----SSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 239 ~~~~~~-----~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
|+|++. .+||+||++. +||+|+|++
T Consensus 213 c~~~gp~G~S~~~GIsIGsgs----~NVtV~Nc~ 242 (609)
T 3gq8_A 213 CYSHDPRLTANCNGFEIDDGS----RHVVLSNNR 242 (609)
T ss_dssp CEEECCSSCSSCCSEEECTTC----EEEEEESEE
T ss_pred EEEECCCCCCCcccEEccCCc----ccEEEEeeE
Confidence 888543 4677777543 555555554
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=269.48 Aligned_cols=218 Identities=19% Similarity=0.271 Sum_probs=177.1
Q ss_pred EeeeccccCCCCchhHHHHHHHH-HhCCC------C------------------CCCcEEEECCCeEEE---eeEEecCc
Q 038762 16 SVIDFGAKGDGIHYDTAAIQSAI-DACPP------G------------------NKPCQVRFPPGEYLT---ATIRLKSH 67 (268)
Q Consensus 16 ~v~dyga~~dg~~d~t~aiq~Ai-~~~~~------~------------------~~g~~v~ip~G~Y~~---~~l~l~s~ 67 (268)
+...|||++||.++.+.+|. ++ +.+.. . .++++|+||||+|++ +++.|+|+
T Consensus 144 n~~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G~yl~g~~G~i~l~s~ 222 (549)
T 1x0c_A 144 DDDLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSSS 222 (549)
T ss_dssp GGGEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSEEEECCTTCCEEECTT
T ss_pred CCccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCeEEecCCceEEEecCC
Confidence 33568999999999888887 44 32221 1 358899999999996 58999999
Q ss_pred eE-EEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCC
Q 038762 68 VT-LNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECR 146 (268)
Q Consensus 68 ~~-l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (268)
++ |++++||.|+++ +.+..+++||+|+|.|+|||+|..||...... |.. .| ..+
T Consensus 223 ~~~L~l~~GA~L~gs--------------~~~~~~~~nv~ItG~GtIDG~G~~ww~~~~~~------~~~--~~---~~r 277 (549)
T 1x0c_A 223 VTWVYFAPGAYVKGA--------------VEFLSTASEVKASGHGVLSGEQYVWYADPDEG------YQK--AS---GAN 277 (549)
T ss_dssp CCEEEECTTEEEESC--------------EEECCCSSEEEEESSCEEECTTSCTTEEGGGT------TEE--CG---GGC
T ss_pred CCeEecCCCCEEEEE--------------EEEecCceeEEEEeeEEEECCCceecccCccc------ccc--cc---cCC
Confidence 99 999999999873 12223899999999999999999999643211 100 01 125
Q ss_pred ceEEEE------eccccEEEEeEEEeCCCCcEEEEe-ee-ec--EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEe
Q 038762 147 PRLVGF------LGCRNVNVWNVRLREPAYWCLHIV-RC-DN--TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQID 216 (268)
Q Consensus 147 ~~~i~~------~~~~nv~I~~v~i~n~~~~~i~~~-~~-~n--v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~ 216 (268)
|+++.+ .+|+|++|++++++|++.|++++. .| ++ ++|+++++.++. .+++||||+. ++|+|+||.|.
T Consensus 278 p~~i~~~~~~~~~~c~nV~I~Giti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~-~~NTDGidi~--~nV~I~n~~i~ 354 (549)
T 1x0c_A 278 NNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAF-YGQTDGLEMY--PGTILQDVFYH 354 (549)
T ss_dssp SCCCCSEEEECCSSCEEEEEESCEEECCSSCSEEEECSCGGGEEEEEEEEEEECCC-BTTCCCCBCC--TTCEEEEEEEE
T ss_pred CceEEEeeccccCCceEEEEECcEEECCCceeEEeeccCCCCCeEEEEeeEeEcCC-CCCCCccccc--CCEEEEeeEEe
Confidence 666666 999999999999999999999966 45 69 999999998743 3589999998 99999999999
Q ss_pred cCCceeeecCCCCCeecEEEEceEEecC-Ccc-EEeeeeeeeeEEeEEEEeeEC
Q 038762 217 TGDDAICPKTYTGPLYNLTATDSWIRTK-SSA-IKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 217 ~gDD~i~i~s~~~~~~nv~v~n~~~~~~-~~g-i~ig~~~~~~~~ni~~~ni~i 268 (268)
++||||++|+ +||+|+||+|+.. .++ |++|+. ...++||+|+||+|
T Consensus 355 ~gDDcIaIks-----~NI~I~n~~~~~~~g~~~IsiGs~-~~~V~NV~v~n~~i 402 (549)
T 1x0c_A 355 TDDDGLKMYY-----SNVTARNIVMWKESVAPVVEFGWT-PRNTENVLFDNVDV 402 (549)
T ss_dssp ESSCCEECCS-----SSEEEEEEEEEECSSSCSEECCBS-CCCEEEEEEEEEEE
T ss_pred CCCCEEEECC-----CCEEEEeeEEEcCCCCceEEECCC-CCcEEEEEEEeeEE
Confidence 9999999998 9999999999865 456 999995 67899999999986
|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=263.28 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=161.4
Q ss_pred CCCcEEEECCCeEEE-------------eeEEecCceE-EEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEec
Q 038762 45 NKPCQVRFPPGEYLT-------------ATIRLKSHVT-LNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGG 110 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~~-------------~~l~l~s~~~-l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 110 (268)
.++++||||||+|++ ++|.|+|+++ |++++||+|+++ +.+.+++||+|+|.
T Consensus 229 ~ggg~v~vP~G~yl~~~~~~~gpc~~g~G~i~lkSnvt~L~L~~GA~l~g~---------------i~~~~~~nv~ItG~ 293 (574)
T 1ogo_X 229 GAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGA---------------IEYFTKQNFYATGH 293 (574)
T ss_dssp CSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESC---------------EEECCSSCEEEESS
T ss_pred CCCCEEEECCcEEEEeccccCCcccccceEEEecCCCceEEecCCcEEEcc---------------EEEeCceeEEEEeC
Confidence 468899999999998 5799999999 999999999973 35689999999999
Q ss_pred cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEe------ccccEEEEeEEEeCCCCcEEEEeeeecE--E
Q 038762 111 GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFL------GCRNVNVWNVRLREPAYWCLHIVRCDNT--F 182 (268)
Q Consensus 111 G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~nv~I~~v~i~n~~~~~i~~~~~~nv--~ 182 (268)
|+|||+|..||...... | . .|. .+|.++.+. +|+|++|++++++|++.|++++..|+++ +
T Consensus 294 GtIDG~G~~ww~~~~~~------~-~--~~~---~rp~~i~~~~~~~~~~c~NV~I~Giti~NSp~w~i~~~~c~nV~~~ 361 (574)
T 1ogo_X 294 GILSGENYVYQANAGDN------Y-I--AVK---SDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ 361 (574)
T ss_dssp CEEECTTSCTTCBTTTT------T-B--SCC---CTTTBCCSEEECSCCSSEEEEEESCEEECCSSCSEEECSSSCEEEE
T ss_pred EEEeCCCcccccccccc------c-c--ccc---CCcceEEEEeccccCCceeEEEECeEEECCCCcEEeecCCCChhhE
Confidence 99999999999642211 1 0 111 356677766 9999999999999999999999999999 9
Q ss_pred EEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCC-cc-EEeeeeeeeeEEe
Q 038762 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKS-SA-IKLGSASWFDFKA 260 (268)
Q Consensus 183 i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~-~g-i~ig~~~~~~~~n 260 (268)
|+++++.++. ..++||||+. ++|+|+||+|.++||||++|+ +||+|+||++...+ ++ |++|+. ...++|
T Consensus 362 I~nv~i~~~~-~~nTDGIDi~--~NV~I~nc~I~~gDDcIaIks-----~NI~I~nc~i~~g~g~g~IsIGS~-~g~V~N 432 (574)
T 1ogo_X 362 ISDYKQVGAF-FFQTDGPEIY--PNSVVHDVFWHVNDDAIKIYY-----SGASVSRATIWKCHNDPIIQMGWT-SRDISG 432 (574)
T ss_dssp EEEEEEECCC-STTCCCCBCC--TTCEEEEEEEEESSCSEECCS-----TTCEEEEEEEEECSSSCSEECCSS-CCCEEE
T ss_pred EEeeEeeCCC-CCCCccCccc--CCEEEEeeEEECCCCEEEECC-----ccEEEEeEEEECCCCCceEEEcCC-CCcEEE
Confidence 9999998643 2359999998 999999999999999999998 99999999998654 56 999995 578999
Q ss_pred EEEEeeEC
Q 038762 261 LVFDNITI 268 (268)
Q Consensus 261 i~~~ni~i 268 (268)
|+|+||+|
T Consensus 433 V~v~N~~i 440 (574)
T 1ogo_X 433 VTIDTLNV 440 (574)
T ss_dssp EEEEEEEE
T ss_pred EEEEeEEE
Confidence 99999986
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=248.28 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=161.1
Q ss_pred CceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC----eEEE-eeEEecCceEEEEcCCeeEEeCCCCC
Q 038762 11 HIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG----EYLT-ATIRLKSHVTLNIHEDATLLGGPRIE 85 (268)
Q Consensus 11 ~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G----~Y~~-~~l~l~s~~~l~~~~ga~l~~~~~~~ 85 (268)
.++.++|+||||++||.+|||+|||+||++|.+..++++|+||+| +|++ +++.|+|+++|+++.+++++++...-
T Consensus 48 ~s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a~~GGGtVyVPaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~I 127 (514)
T 2vbk_A 48 NKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGL 127 (514)
T ss_dssp HTTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHTSTTCEEEECCCCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTTC
T ss_pred CCcEEEeeccCcCCCCCcccHHHHHHHHHHHhhcCCCeEEEECCCCcceeEEECCeEEecCCeEEEEecCceEeeccccc
Confidence 346899999999999999999999999997654137899999999 8988 58999999999999999887643110
Q ss_pred CCCCCCCce-EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEE
Q 038762 86 DYPEESSRW-YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVR 164 (268)
Q Consensus 86 ~~~~~~~~~-~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~ 164 (268)
.-......| ..+.+.+.+||+|+|.|+|||++..|.... | ..+++..+. ++++.|++++
T Consensus 128 ~GtIia~~y~s~I~~~~VeNIaITG~GTIDG~g~n~t~e~---------~--------~~Rq~~~~~---fdnV~Vn~Vt 187 (514)
T 2vbk_A 128 TGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAED---------S--------VIRQVYGWV---FDNVMVNEVE 187 (514)
T ss_dssp CSEEEEECCCSCCSCEEEESCEEECCSSSEEEEESCCTTC---------S--------SCCCEESEE---EESCEEEEEE
T ss_pred cccEEeccCCccccccCceEEEEECCCeEeCCCCCccccc---------e--------eeeccceEE---eeeEEEEeEE
Confidence 000000011 123467899999999999999776542110 0 011222333 6799999996
Q ss_pred E--eCCCCcEEEEeeeecEEEE-eEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC--------CCCeec
Q 038762 165 L--REPAYWCLHIVRCDNTFIR-DMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY--------TGPLYN 233 (268)
Q Consensus 165 i--~n~~~~~i~~~~~~nv~i~-~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~--------~~~~~n 233 (268)
. .+++.|.+++..|++++++ ++++. .+|+||.|+||+|..|||||++|++ ..+++|
T Consensus 188 ~~v~~Sg~WTIhPi~Cqnvt~r~gL~f~-------------eSCrNV~IsnC~FsVGDdciaiksGk~~~~~~~~~~se~ 254 (514)
T 2vbk_A 188 TAYLMQGLWHSKFIACQAGTCRVGLHFL-------------GQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEA 254 (514)
T ss_dssp EEEEEESEEEEEEESCEEEEEEEEEEEE-------------SCCEEEEEESCEEECTTSCCTTCEEEEEECBCCTTTSSC
T ss_pred EeEeccCcEEEeEeccCceecccCcccc-------------CCCCeEEEeccEEecCcceeeeecCceecccccCCcchh
Confidence 5 4788999999999999987 55553 2799999999999999999999985 347777
Q ss_pred EEEEceEEecCCccEEeeee-eeeeEEe-EEEEeeE
Q 038762 234 LTATDSWIRTKSSAIKLGSA-SWFDFKA-LVFDNIT 267 (268)
Q Consensus 234 v~v~n~~~~~~~~gi~ig~~-~~~~~~n-i~~~ni~ 267 (268)
+. +.++.|||+ ..+.++| +++++|-
T Consensus 255 ~~---------hgav~igSE~m~~Gvk~~v~v~~Cl 281 (514)
T 2vbk_A 255 VR---------SEAIILDSETMCIGFKNAVYVHDCL 281 (514)
T ss_dssp BC---------CEEEEEESSEEEESCSEEEEESCCE
T ss_pred cc---------cccEEECchhhcccccccEEEEeee
Confidence 76 445888888 6778888 7777663
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=225.49 Aligned_cols=225 Identities=21% Similarity=0.168 Sum_probs=157.0
Q ss_pred eeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEE--------eeEEecCceEEEEcC-C-eeEEeCC
Q 038762 13 HIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLT--------ATIRLKSHVTLNIHE-D-ATLLGGP 82 (268)
Q Consensus 13 ~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~--------~~l~l~s~~~l~~~~-g-a~l~~~~ 82 (268)
++++|+||||++||.+|||+|||+||++|++ .++++|+||||+|++ +++.|+|+++|++++ + ++|++..
T Consensus 1 ~~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~~-~gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~~ 79 (377)
T 2pyg_A 1 MDYNVKDFGALGDGVSDDRASIQAAIDAAYA-AGGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLID 79 (377)
T ss_dssp -CEEGGGGTCCCEEEEECHHHHHHHHHHHHH-TTSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEECT
T ss_pred CEeeeeecCCCCCCCcchHHHHHHHHHHHHh-cCCCEEEECCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEecC
Confidence 3689999999999999999999999999876 678999999999998 479999999999983 4 6667665
Q ss_pred CCCCCCCC--CCce-EEEEEEeeeccEEEec-----cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEec
Q 038762 83 RIEDYPEE--SSRW-YVVLAENATDVGITGG-----GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLG 154 (268)
Q Consensus 83 ~~~~~~~~--~~~~-~~i~~~~~~nv~I~G~-----G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (268)
....++.. ...| ........++++|.|. |+++| ||...... .+..
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~I~G~~~~~~G~idG----w~~~~~~~-----------------------~~~~ 132 (377)
T 2pyg_A 80 GSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDG----WFNGYIPG-----------------------GDGA 132 (377)
T ss_dssp TCBSCEEEEEECCTTSCCEEEEEEEEEEECCGGGCBSCEEE----EEECSCTT-----------------------SSCC
T ss_pred CCccCccceEeccCCCcceEEEEEEEEEECCCccCCccccc----eecccCcc-----------------------cccc
Confidence 43333210 0000 0002357899999997 77876 76432100 1245
Q ss_pred cccEEEEeEEEeCCCCcEEEEeeee-cEEEEeEEEEcC-------------------CCCCCCceeeecC-cccEEEEee
Q 038762 155 CRNVNVWNVRLREPAYWCLHIVRCD-NTFIRDMSIYGD-------------------FNTPNNDGIDIED-SNNTVITRV 213 (268)
Q Consensus 155 ~~nv~I~~v~i~n~~~~~i~~~~~~-nv~i~~~~i~~~-------------------~~~~~~DGi~~~~-~~~v~I~n~ 213 (268)
|++++|+++++++++.|++++..|. +++++|+.+... ...++.|||++.. +++++|++|
T Consensus 133 ~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN 212 (377)
T 2pyg_A 133 DRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNN 212 (377)
T ss_dssp EEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESC
T ss_pred ccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECC
Confidence 7888888888888888888877765 466666555221 0124678888775 778888888
Q ss_pred EEecCCceeeec---C-CCCCeecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEe
Q 038762 214 QIDTGDDAICPK---T-YTGPLYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 214 ~i~~gDD~i~i~---s-~~~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~n 265 (268)
.+...++|+.+. + ....+.+++|++|++++. .+|+.+.......++|.++.+
T Consensus 213 ~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~~Gi~~~~~~~v~i~~N~i~~ 269 (377)
T 2pyg_A 213 VAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHG 269 (377)
T ss_dssp EEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEES
T ss_pred EEECccCceEEEeccccCCCCCccEEEECCEEEcCccCceEeccccCeEEECCEEEC
Confidence 888877777762 1 113578889999988863 567776555555555555544
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=212.24 Aligned_cols=210 Identities=21% Similarity=0.231 Sum_probs=168.7
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCC---------cEEEECCCeEEE-eeEEecCceEEEEcCC--ee
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKP---------CQVRFPPGEYLT-ATIRLKSHVTLNIHED--AT 77 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g---------~~v~ip~G~Y~~-~~l~l~s~~~l~~~~g--a~ 77 (268)
..+..+||+||||++||.+|||+|||+||+++++ .++ ++||||+|+|++ ++|.+++++.|.+++. .+
T Consensus 45 ~y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~-~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~~~~~pv 123 (758)
T 3eqn_A 45 GYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGR-CGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPT 123 (758)
T ss_dssp TCCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSC-SCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEECSSSCCE
T ss_pred CCeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhh-cccccccccccceEEEECCceEEEcccEEccCCeEEEecCCCCCe
Confidence 3455889999999999999999999999998865 333 599999999987 5899999999999976 57
Q ss_pred EEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEecccc
Q 038762 78 LLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRN 157 (268)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n 157 (268)
|+..+.... . . + |.+ ...+++|..||.. ...++..++|
T Consensus 124 Ika~~~F~G------~-~---------l-i~~-d~y~~~G~~w~~~------------------------~~~F~r~irN 161 (758)
T 3eqn_A 124 LLAAPNFSG------I-A---------L-IDA-DPYLAGGAQYYVN------------------------QNNFFRSVRN 161 (758)
T ss_dssp EEECTTCCS------S-C---------S-EES-SCBCGGGCBSSCG------------------------GGCCCEEEEE
T ss_pred EecCCCCCC------c-c---------e-eec-cccCCCCcccccc------------------------ccceeeeecc
Confidence 877543111 0 0 1 233 2345666777632 2244556677
Q ss_pred EEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCC-CCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEE
Q 038762 158 VNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP-NNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTA 236 (268)
Q Consensus 158 v~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~-~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v 236 (268)
+.|+ ++..++...+|++..|++..+.||.|..+..+. ..+||+++++..+.|+|++|..|+=++.++. +..++
T Consensus 162 lviD-~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~sg~~~~GI~~e~GSgg~i~Dl~f~GG~~G~~~gn-----QQfT~ 235 (758)
T 3eqn_A 162 FVID-LRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVFNGGNIGATFGN-----QQFTV 235 (758)
T ss_dssp EEEE-CTTCSSCEEEEECCCCSSEEEEEEEEECCCSTTCCEEEEEECSCCCCEEEEEEEESCSEEEEEEC-----SCCEE
T ss_pred eEEe-ccccCCCceEEEEEecCceEEEEEEEEecCCCCCcceeEEecCCCceEEEeeEEeCCceEEEcCC-----cceEE
Confidence 7775 565666678999999999999999999876653 5999999988899999999999999999876 89999
Q ss_pred EceEEecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 237 TDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 237 ~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
+|.+|.++.-+|.+.+.++-++++++++||.+
T Consensus 236 rnltF~~~~taI~~~w~wgwt~~~~~i~nc~v 267 (758)
T 3eqn_A 236 RNLTFNNANTAINAIWNWGWTFQRITINNCQV 267 (758)
T ss_dssp EEEEEESCSEEEEEEEBSCEEEEEEEEESCSE
T ss_pred eccEEeChHHHHhhhcCceEEEEEeEEECCCc
Confidence 99999998889999998999999999999853
|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=148.62 Aligned_cols=183 Identities=11% Similarity=0.128 Sum_probs=122.1
Q ss_pred cCCCceeEEeeec----cccCCCCchhHHHHHHHHHhCC-------CCCCCcEEEECCCeEE-EeeEEecCc-eEEEEcC
Q 038762 8 STTHIHIHSVIDF----GAKGDGIHYDTAAIQSAIDACP-------PGNKPCQVRFPPGEYL-TATIRLKSH-VTLNIHE 74 (268)
Q Consensus 8 ~~~~~~~~~v~dy----ga~~dg~~d~t~aiq~Ai~~~~-------~~~~g~~v~ip~G~Y~-~~~l~l~s~-~~l~~~~ 74 (268)
+.+....++|++| +|++++.+|++++|+++|..++ + ..|++|+||||+|. .+++.|... ++|.+++
T Consensus 8 ~~~~~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A-~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~ 86 (410)
T 2inu_A 8 PLNSPNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDA-RPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFG 86 (410)
T ss_dssp ----CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTS-CCCEEEECCSEEEEECSCEEECCTTEEEECSC
T ss_pred ccccCceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccC-CCCCEEEECCCeeccCCcEEEecCcEEEEecC
Confidence 3456789999999 8999999999999999996432 3 56999999999997 489999887 9999987
Q ss_pred -Cee---EEeCCCCCCCCCCC--C----------ceEEEEEEe-----eeccEEEeccEEecC-----Ccccccchhhcc
Q 038762 75 -DAT---LLGGPRIEDYPEES--S----------RWYVVLAEN-----ATDVGITGGGVVDGQ-----AMKFVVTKNEIK 128 (268)
Q Consensus 75 -ga~---l~~~~~~~~~~~~~--~----------~~~~i~~~~-----~~nv~I~G~G~i~g~-----g~~~~~~~~~~~ 128 (268)
+++ |.+......|.... + ....|+.+. .++|++.+ -+|+|- |..+
T Consensus 87 ~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~r~s~V~~~~-v~I~G~~~~~~G~s~-------- 157 (410)
T 2inu_A 87 HGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRD-FCLDGVGFTPGKNSY-------- 157 (410)
T ss_dssp CCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSSCEECCEEES-CEEECCCCSSSTTSC--------
T ss_pred CCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCcccCCcEECC-EEEECCEeecCCCCc--------
Confidence 443 66321112211100 0 112222222 25666665 345443 3221
Q ss_pred cceecccccCCCCCCCCCceEEEEec-cccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cc
Q 038762 129 NVMVSWNHTGACSGDECRPRLVGFLG-CRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SN 206 (268)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~ 206 (268)
.....++++.. +++++|+++.|.+. .|||.++.+++.+|++..|.. ...||++++ ++
T Consensus 158 ---------------~~~dAGI~v~~~~d~~~I~nn~i~~~-~fGI~l~~a~~~~I~~N~I~e-----~GNgI~L~G~~~ 216 (410)
T 2inu_A 158 ---------------HNGKTGIEVASDNDSFHITGMGFVYL-EHALIVRGADALRVNDNMIAE-----CGNCVELTGAGQ 216 (410)
T ss_dssp ---------------CCSCEEEEECSCEESCEEESCEEESC-SEEEEETTEESCEEESCEEES-----SSEEEEECSCEE
T ss_pred ---------------ccCceeEEEeccCCeEEEECCEEecc-cEEEEEccCCCcEEECCEEEe-----cCCceeeccccc
Confidence 12345777776 88889999999998 579999999999999999984 455566655 55
Q ss_pred cEEEEeeEEecCCce
Q 038762 207 NTVITRVQIDTGDDA 221 (268)
Q Consensus 207 ~v~I~n~~i~~gDD~ 221 (268)
...|+++.+..++||
T Consensus 217 ~~~I~~N~i~~~~dG 231 (410)
T 2inu_A 217 ATIVSGNHMGAGPDG 231 (410)
T ss_dssp SCEEESCEEECCTTS
T ss_pred cceEecceeeecCCC
Confidence 556666666555555
|
| >2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=139.36 Aligned_cols=165 Identities=12% Similarity=0.190 Sum_probs=129.1
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
++++|.+.+|++|.+... .|... ..+..++.+.+++|++|+|--..+.
T Consensus 68 ~nv~I~G~~gG~IdG~G~--~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~ns------------------------ 121 (339)
T 2iq7_A 68 TNININGASGHSIDCQGS--RWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNT------------------------ 121 (339)
T ss_dssp ESCEEEECTTCEEECCGG--GTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECC------------------------
T ss_pred ccEEEEcCCCCEEECCcc--cccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeC------------------------
Confidence 688998876678887542 23221 1122356778999999999422221
Q ss_pred CCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEE
Q 038762 140 CSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVIT 211 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~ 211 (268)
....+.+..|+|++|+++++.+++ ..|+++..|+||+|+|+.|.. ..|+|.+.+++||+|+
T Consensus 122 ------p~~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~ 190 (339)
T 2iq7_A 122 ------PVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKN-----QDDCLAINSGTNITFT 190 (339)
T ss_dssp ------SSCCEEEESCEEEEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEE
T ss_pred ------CcceEEEeccCCEEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEec-----CCCEEEEcCCccEEEE
Confidence 123699999999999999998752 348999999999999999986 7899999999999999
Q ss_pred eeEEecCCceeeecCC----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTY----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
||.+..+. +|+++|- .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 191 n~~~~~gh-GisiGSlg~~~~~~v~nV~v~n~~~~~~~~girIkt~~g~~G~v~nI~~~ni~~ 252 (339)
T 2iq7_A 191 GGTCSGGH-GLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITL 252 (339)
T ss_dssp SCEEESSC-CEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEE
T ss_pred eEEEECCc-eEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEc
Confidence 99999976 6999872 25799999999999999999998663 235678888888775
|
| >1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=137.41 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=128.1
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
++++|.+.+|++|.+... .|... ..+..++.+.+++|++|+|- ++...
T Consensus 72 ~nv~I~G~~gG~IdG~G~--~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i-~i~ns----------------------- 125 (339)
T 1ia5_A 72 SDLTITGASGHSINGDGS--RWWDGEGGNGGKTKPKFFAAHSLTNSVISGL-KIVNS----------------------- 125 (339)
T ss_dssp ESCEEEECTTCEEECCGG--GTCSSCTTTSSSCCCCCEEEEEEEEEEEESC-EEECC-----------------------
T ss_pred CcEEEEcCCCeEEeCCCC--ccccccccCCCCCCCeEEEEeecCcEEEEEE-EEEcC-----------------------
Confidence 688888876678887542 23221 11223567789999999994 33211
Q ss_pred CCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEE
Q 038762 140 CSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVIT 211 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~ 211 (268)
....+.+..|+|++|+++++.++. ..|+++..|+||+|+|+.|.. ..|+|.+.+++||+|+
T Consensus 126 ------p~~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~ 194 (339)
T 1ia5_A 126 ------PVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-----QDDCVAVNSGENIYFS 194 (339)
T ss_dssp ------SSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEE
T ss_pred ------CcceEEEecccCeEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEc-----CCCeEEEeCCeEEEEE
Confidence 123689999999999999998742 448999999999999999986 7899999988999999
Q ss_pred eeEEecCCceeeecCC----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTY----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
||.+..+. +|+++|. .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 195 n~~~~~gh-GisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIKt~~g~~G~v~nI~~~ni~~ 256 (339)
T 1ia5_A 195 GGYCSGGH-GLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITL 256 (339)
T ss_dssp SCEEESSS-CEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEE
T ss_pred eEEEECCc-eEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeCCCCcEEEeeEEEEEEE
Confidence 99999876 6999872 35799999999999999999998653 235677777777765
|
| >1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-16 Score=137.11 Aligned_cols=165 Identities=12% Similarity=0.181 Sum_probs=127.3
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCCC-------CceEEEEE-E-eeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEES-------SRWYVVLA-E-NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~~-------~~~~~i~~-~-~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
++++|.++++++|.+.+. .|.... .+..++.+ . .++|++|+|- ++...
T Consensus 69 ~ni~I~G~~~G~IdG~G~--~ww~~~~~~~~~~~rP~~i~~~~~~~~nv~I~gi-ti~ns-------------------- 125 (349)
T 1hg8_A 69 SNITITGASGHVIDGNGQ--AYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNL-NIQNW-------------------- 125 (349)
T ss_dssp ESCEEEECTTCEEECCGG--GTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESC-EEECC--------------------
T ss_pred ccEEEEecCCCEEcCCcc--hhhhcccccCCCCCCCeEEEEeecCcCcEEEEEE-EEEcC--------------------
Confidence 688888866678887542 232210 12225666 6 6779999994 33211
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----------------CcEEEEeeeecEEEEeEEEEcCCCCCCCcee
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----------------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI 200 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----------------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi 200 (268)
....+++.+|+|++|+++++.+++ ..|+++..|+||+|+|+.|.. ..|+|
T Consensus 126 ---------p~~~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~-----gDDcI 191 (349)
T 1hg8_A 126 ---------PVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCV 191 (349)
T ss_dssp ---------SSEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSE
T ss_pred ---------CCceEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEec-----CCCeE
Confidence 134699999999999999998742 348999999999999999986 78999
Q ss_pred eecCcccEEEEeeEEecCCceeeecCC----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 201 DIEDSNNTVITRVQIDTGDDAICPKTY----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 201 ~~~~~~~v~I~n~~i~~gDD~i~i~s~----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
.+.++++|+|+||.+..+. +|+++|. .+.++||+|+||+|.++.+|++|.+. ..+.++||+|+|++|
T Consensus 192 aiksg~nI~i~n~~~~~gh-GisiGS~G~~~~~~v~nV~v~n~~~~~~~~GirIKt~~g~~G~v~nI~~~ni~~ 264 (349)
T 1hg8_A 192 AVTSGTNIVVSNMYCSGGH-GLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIAL 264 (349)
T ss_dssp EESSEEEEEEEEEEEESSC-CEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEE
T ss_pred EeeCCeEEEEEeEEEeCCc-ceEEccccccccCCEEEEEEEEEEEECCCcEEEEEecCCCCccccceEEEEEEE
Confidence 9999999999999999876 6999873 36799999999999999999998653 235677777777765
|
| >1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=136.36 Aligned_cols=164 Identities=13% Similarity=0.226 Sum_probs=128.3
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
++++|.+.+|++|.+.+. .|... ..+..++.+..++|++|+|- ++...
T Consensus 68 ~nv~I~G~~gG~IdG~G~--~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i-~i~ns----------------------- 121 (336)
T 1nhc_A 68 KDLTVTMADGAVIDGDGS--RWWDSKGTNGGKTKPKFMYIHDVEDSTFKGI-NIKNT----------------------- 121 (336)
T ss_dssp ESCEEEECTTCEEECCGG--GTCCSCTTTSSSCCCCCEEEEEEEEEEEESC-EEECC-----------------------
T ss_pred CCEEEEcCCCeEEECCcc--ccccccCcCCCCCCceEEEEeeeCcEEEEEE-EEEeC-----------------------
Confidence 689999876678887542 23221 11223567789999999994 33211
Q ss_pred CCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEE
Q 038762 140 CSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVIT 211 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~ 211 (268)
....+.+. |+|++|+++++.+++ ..|+++..|+||+|+|+.|.. ..|+|.+.+++||+|+
T Consensus 122 ------p~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~ 189 (336)
T 1nhc_A 122 ------PVQAISVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKN-----QDDCIAINSGESISFT 189 (336)
T ss_dssp ------SSCCEEEE-EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEES-----SSEEEEESSEEEEEEE
T ss_pred ------CccEEEEE-eCCEEEEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEc-----CCCEEEEeCCeEEEEE
Confidence 12358899 999999999999752 458999999999999999986 7899999999999999
Q ss_pred eeEEecCCceeeecCC----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTY----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
||.+..+. +|+++|. .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 190 n~~~~~gh-GisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIkt~~g~~G~v~nI~~~ni~~ 251 (336)
T 1nhc_A 190 GGTCSGGH-GLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQL 251 (336)
T ss_dssp SCEEESSS-EEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEE
T ss_pred eEEEECCc-CceEccCccccCCCEEEEEEEeeEEECCCcEEEEEEECCCCCEEeeeEEeeEEe
Confidence 99999876 6999872 35799999999999999999988653 235788888888775
|
| >3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=141.84 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=112.9
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC--CCcE
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP--AYWC 172 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~--~~~~ 172 (268)
.++.+.+++|++|+|--..+. ....+++..|+|++|+++++.++ ...|
T Consensus 191 ~~i~~~~~~nv~i~giti~ns------------------------------p~~~i~~~~~~nv~i~~v~I~~~~~NtDG 240 (448)
T 3jur_A 191 SFVQFYRCRNVLVEGVKIINS------------------------------PMWCIHPVLSENVIIRNIEISSTGPNNDG 240 (448)
T ss_dssp CSEEEESCEEEEEESCEEESC------------------------------SSCSEEEESCEEEEEESCEEEECSTTCCS
T ss_pred eEEEEEcccceEEEeeEEEeC------------------------------CCceEeeeccCCEEEEeEEEeeccCCCcc
Confidence 367789999999999432222 12358999999999999999974 3558
Q ss_pred EEEeeeecEEEEeEEEEcCCCCCCCceeeec------------CcccEEEEeeEEe--cCCceeeecCC-CCCeecEEEE
Q 038762 173 LHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE------------DSNNTVITRVQID--TGDDAICPKTY-TGPLYNLTAT 237 (268)
Q Consensus 173 i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~------------~~~~v~I~n~~i~--~gDD~i~i~s~-~~~~~nv~v~ 237 (268)
+++..|+||+|+|+.|.. ..|+|.+. .|++|+|+||.+. .+..||+++|. .+.++||+|+
T Consensus 241 idi~~s~nV~I~n~~i~~-----gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~ 315 (448)
T 3jur_A 241 IDPESCKYMLIEKCRFDT-----GDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVAR 315 (448)
T ss_dssp BCCBSCEEEEEESCEEEE-----SSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEE
T ss_pred ccccCCcCEEEEeeEEEe-----CCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEE
Confidence 999999999999999986 45555554 2789999999994 46669999986 4689999999
Q ss_pred ceEEecCCccEEeee--eeeeeEEeEEEEeeEC
Q 038762 238 DSWIRTKSSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 238 n~~~~~~~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
||+|.++.+|++|.+ ..++.++||+|+|++|
T Consensus 316 n~~~~~t~~GirIKt~~g~gG~v~nI~f~ni~m 348 (448)
T 3jur_A 316 NNVYMNVERALRLKTNSRRGGYMENIFFIDNVA 348 (448)
T ss_dssp SCEEESCSEEEEEECCTTTCSEEEEEEEESCEE
T ss_pred EEEEecccceEEEEEEcCCCceEeeEEEEEEEE
Confidence 999999999999976 3457888888888875
|
| >1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=136.98 Aligned_cols=164 Identities=11% Similarity=0.108 Sum_probs=126.0
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC-----CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE-----SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGAC 140 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~-----~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~ 140 (268)
+++++.+..+++|.+.+. .|... ..+..++.+.+++|++|+|- ++... +
T Consensus 95 ~nv~I~G~~~g~IdG~G~--~~w~~~~~~~~~rP~~i~~~~~~nv~i~~i-ti~ns--p--------------------- 148 (362)
T 1czf_A 95 EHITVTGASGHLINCDGA--RWWDGKGTSGKKKPKFFYAHGLDSSSITGL-NIKNT--P--------------------- 148 (362)
T ss_dssp ESCEEEECTTCEEECCGG--GTCCSCTTSSSCCCCCEEEEEEETEEEESC-EEECC--S---------------------
T ss_pred ccEEEEcCCCcEEECCCc--hhhcccCCCCCCCCeEEEEeecccEEEEEE-EEecC--C---------------------
Confidence 688888865578877542 23221 11223567789999999993 33211 1
Q ss_pred CCCCCCceEEEEeccccEEEEeEEEeCC-------C-CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEe
Q 038762 141 SGDECRPRLVGFLGCRNVNVWNVRLREP-------A-YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITR 212 (268)
Q Consensus 141 ~~~~~~~~~i~~~~~~nv~I~~v~i~n~-------~-~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n 212 (268)
...+.+. |+|++|+|+++.++ + ..|+++..|+||+|+|+.|.. ..|+|.+.+++||+|+|
T Consensus 149 ------~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n 216 (362)
T 1czf_A 149 ------LMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTG 216 (362)
T ss_dssp ------SCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEES
T ss_pred ------ccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEec-----CCCEEEEeCCeEEEEEE
Confidence 2358899 99999999999873 2 448999999999999999996 78999999889999999
Q ss_pred eEEecCCceeeecCC----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 213 VQIDTGDDAICPKTY----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 213 ~~i~~gDD~i~i~s~----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
|.+..+. +|+++|. .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 217 ~~~~~gh-GisiGS~G~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nI~~~ni~~ 277 (362)
T 1czf_A 217 GTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVM 277 (362)
T ss_dssp CEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEE
T ss_pred EEEeCCc-eeEEeeccccCCCCEEEEEEEeeEEECCceEEEEEEeCCCCceEeeEEEEeEEE
Confidence 9999876 6999883 36799999999999999999988553 235677777777765
|
| >1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=134.15 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=112.8
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----C
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----Y 170 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~ 170 (268)
.++.+.+++|+.|+|- ++... ....+.+..|+|++|+++++.++. .
T Consensus 152 ~~i~~~~~~nv~I~~i-ti~ns-----------------------------p~~~i~~~~~~~v~i~~v~I~~~~~~~Nt 201 (376)
T 1bhe_A 152 RLIQINKSKNFTLYNV-SLINS-----------------------------PNFHVVFSDGDGFTAWKTTIKTPSTARNT 201 (376)
T ss_dssp CSEEEESCEEEEEEEE-EEECC-----------------------------SSCSEEEESCEEEEEEEEEEECCTTCSSC
T ss_pred eEEEEEcceEEEEEeE-EEECC-----------------------------CcEEEEEeCCCcEEEEeEEEECCCCCCCC
Confidence 3567889999999993 33211 123588899999999999998742 4
Q ss_pred cEEEEeeeecEEEEeEEEEcCCCCCCCceeeec------CcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 171 WCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE------DSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 171 ~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~------~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
.|+++..|+||+|+|+.|.. ..|+|.+. .|+||+|+||.+..+. +++++|....++||+|+||+|.++
T Consensus 202 DGid~~~s~nV~I~n~~i~~-----gDDcIaiks~~~~~~s~nI~I~n~~~~~gh-GisiGSe~~~v~nV~v~n~~~~~t 275 (376)
T 1bhe_A 202 DGIDPMSSKNITIAYSNIAT-----GDDNVAIKAYKGRAETRNISILHNDFGTGH-GMSIGSETMGVYNVTVDDLKMNGT 275 (376)
T ss_dssp CSEEEESCEEEEEESCEEEC-----SSCSEEEEECTTSCCEEEEEEEEEEECSSS-CEEEEEEESSEEEEEEEEEEEESC
T ss_pred ceEeecCCceEEEEeCEEec-----CCCeEEEcccCCCCCceEEEEEeeEEEccc-cEEeccCCccEeeEEEEeeEEeCC
Confidence 58999999999999999986 67888887 6899999999998865 599988656899999999999999
Q ss_pred CccEEeee--eeeeeEEeEEEEeeEC
Q 038762 245 SSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 245 ~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
.+|++|.+ ..++.++||+|+|++|
T Consensus 276 ~~GirIKt~~g~~G~v~ni~f~ni~~ 301 (376)
T 1bhe_A 276 TNGLRIKSDKSAAGVVNGVRYSNVVM 301 (376)
T ss_dssp SEEEEEECCTTTCCEEEEEEEEEEEE
T ss_pred CcEEEEEEecCCCceEeeEEEEeEEE
Confidence 99998865 3456778888888775
|
| >1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=134.54 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=119.3
Q ss_pred CcE-EEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCC------CCCCCCCCceEEEEE------EeeeccEEEeccEE
Q 038762 47 PCQ-VRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRI------EDYPEESSRWYVVLA------ENATDVGITGGGVV 113 (268)
Q Consensus 47 g~~-v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~------~~~~~~~~~~~~i~~------~~~~nv~I~G~G~i 113 (268)
+-+ |++++|.++.+.+.+.+...|.+.++++|.+.+.. ..|+....++..+.+ .+|+||.|+|....
T Consensus 264 nvt~L~L~~GA~l~g~i~~~~~~nv~ItG~GtIDG~G~~ww~~~~~~~~~~~~rp~~i~~~~~~~~~~c~NV~I~Giti~ 343 (574)
T 1ogo_X 264 NTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTIN 343 (574)
T ss_dssp TCCEEEECTTEEEESCEEECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEECSCCSSEEEEEESCEEE
T ss_pred CCceEEecCCcEEEccEEEeCceeEEEEeCEEEeCCCcccccccccccccccCCcceEEEEeccccCCceeEEEECeEEE
Confidence 445 89999999888888876555555555888875421 111111111112222 38999999996544
Q ss_pred ecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccE--EEEeEEEeCCCC---cEEEEeeeecEEEEeEEE
Q 038762 114 DGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNV--NVWNVRLREPAY---WCLHIVRCDNTFIRDMSI 188 (268)
Q Consensus 114 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv--~I~~v~i~n~~~---~~i~~~~~~nv~i~~~~i 188 (268)
+. .+ ..+++..|+|+ +|+++++.+++. .|+.+. +||+|+||.|
T Consensus 344 NS---p~---------------------------w~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~--~NV~I~nc~I 391 (574)
T 1ogo_X 344 AP---PF---------------------------NTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY--PNSVVHDVFW 391 (574)
T ss_dssp CC---SS---------------------------CSEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC--TTCEEEEEEE
T ss_pred CC---CC---------------------------cEEeecCCCChhhEEEeeEeeCCCCCCCccCccc--CCEEEEeeEE
Confidence 42 22 24889999999 999999987543 378887 9999999999
Q ss_pred EcCCCCCCCceeeecCcccEEEEeeEEecCCc-e-eeecCCCCCeecEEEEceEEecCCc
Q 038762 189 YGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD-A-ICPKTYTGPLYNLTATDSWIRTKSS 246 (268)
Q Consensus 189 ~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD-~-i~i~s~~~~~~nv~v~n~~~~~~~~ 246 (268)
.. ..|.|.+.+ +||+|+||.+.++.. + |++++..+.++||+|+||++.+..+
T Consensus 392 ~~-----gDDcIaIks-~NI~I~nc~i~~g~g~g~IsIGS~~g~V~NV~v~N~~i~~~~~ 445 (574)
T 1ogo_X 392 HV-----NDDAIKIYY-SGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRY 445 (574)
T ss_dssp EE-----SSCSEECCS-TTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEEECCC
T ss_pred EC-----CCCEEEECC-ccEEEEeEEEECCCCCceEEEcCCCCcEEEEEEEeEEEECCcc
Confidence 97 688897766 999999999988653 4 8999988899999999999987653
|
| >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=132.92 Aligned_cols=162 Identities=13% Similarity=0.104 Sum_probs=123.9
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
+++++.++ +++|.+.+. .|... ..+..++.+..++ ++|+|- ++...
T Consensus 66 ~ni~I~G~-~G~idG~G~--~ww~~~~~~~~~~rP~~i~~~~~~-v~i~gi-ti~ns----------------------- 117 (335)
T 1k5c_A 66 TGINFVGA-DHIFDGNGA--LYWDGKGTNNGTHKPHPFLKIKGS-GTYKKF-EVLNS----------------------- 117 (335)
T ss_dssp EEEEEECT-TCEEECCGG--GTCCSCTTTSSSCCCCCSEEEEEE-EEEESC-EEESC-----------------------
T ss_pred cCEEEEeC-ccEEcCChh--HhhhcccccCCCCCCeEEEEeceE-EEEEEE-EEECC-----------------------
Confidence 46666654 578887542 23221 1122345667888 999983 33211
Q ss_pred CCCCCCCceEEEEecccc-EEEEeEEEeCCC---------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEE
Q 038762 140 CSGDECRPRLVGFLGCRN-VNVWNVRLREPA---------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTV 209 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~n-v~I~~v~i~n~~---------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~ 209 (268)
....+++..|+| ++|+++++.++. ..|+++ .|+||+|+|+.|.. ..|.|.+.+++||+
T Consensus 118 ------p~~~i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~-----gDDcIaiksg~nI~ 185 (335)
T 1k5c_A 118 ------PAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIR 185 (335)
T ss_dssp ------SSCCEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEE
T ss_pred ------CcceEEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEc-----CCCEEEeeCCeeEE
Confidence 123599999999 999999998742 338999 99999999999996 78899998889999
Q ss_pred EEeeEEecCCceeeecCC--CCCeecEEEEceEEecCCccEEeeeeee---eeEEeEEEEeeEC
Q 038762 210 ITRVQIDTGDDAICPKTY--TGPLYNLTATDSWIRTKSSAIKLGSASW---FDFKALVFDNITI 268 (268)
Q Consensus 210 I~n~~i~~gDD~i~i~s~--~~~~~nv~v~n~~~~~~~~gi~ig~~~~---~~~~ni~~~ni~i 268 (268)
|+||.+..+. +|+++|. .+.++||+|+||++.++.+|++|.+..+ +.++||+|+||+|
T Consensus 186 i~n~~~~~gh-GisIGS~g~~~~v~nV~v~n~~~~~t~~girIKt~~g~~~G~v~nI~f~ni~~ 248 (335)
T 1k5c_A 186 FENNQCSGGH-GISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTI 248 (335)
T ss_dssp EESCEEESSC-CEEEEEECTTCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEESCEE
T ss_pred EEEEEEECCc-cCeEeeccCCCCEEEEEEEeeEEECCCceEEEEEeCCCCcceEeeeEEEEEEE
Confidence 9999999875 6999985 4789999999999999999999876433 5688888888875
|
| >2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=138.49 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=115.1
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeC--CC-Cc
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLRE--PA-YW 171 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n--~~-~~ 171 (268)
.++.+.+++|++|+|- ++... ....+++.+|+|++|+++++.+ ++ ..
T Consensus 332 ~~i~~~~~~nv~I~gi-ti~ns-----------------------------~~~~i~~~~~~nv~i~~v~i~~~~~~NtD 381 (608)
T 2uvf_A 332 SLMTLRGVENVYLAGF-TVRNP-----------------------------AFHGIMNLENHNVVANGLIHQTYDANNGD 381 (608)
T ss_dssp CSEEEESEEEEEEESC-EEECC-----------------------------SSCSEEEESCEEEEEESCEEECTTCTTCC
T ss_pred eEEEEEeeeeEEEeCc-EEecC-----------------------------CCCEEEEecCCCEEEeeEEEcCCCCCCCC
Confidence 3577899999999994 33221 1236899999999999999875 22 45
Q ss_pred EEEEeeeecEEEEeEEEEcCCC------CCCCceeeecCcccEEEEeeEEecCCceeeecCC-CCCeecEEEEceEEecC
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFN------TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY-TGPLYNLTATDSWIRTK 244 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~------~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~-~~~~~nv~v~n~~~~~~ 244 (268)
|+++..|++|+|+|+.|...++ ..+.||++...|++|+|+||.+..++++++++|. .+.++||+|+||+|.++
T Consensus 382 Gidi~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~~iGS~~~~~v~nI~v~n~~~~~t 461 (608)
T 2uvf_A 382 GIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGAWIEDILAENNVMYLT 461 (608)
T ss_dssp SEEEESCEEEEEESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSSCSEEEESCCTTCEEEEEEESCEEESC
T ss_pred eEEecCCceEEEEeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCCCeEEEcccCCCCEEEEEEEeEEEECC
Confidence 8999999999999999986433 2345666666789999999999999999889885 46899999999999999
Q ss_pred CccEEeeee--eeeeEEeEEEEeeEC
Q 038762 245 SSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 245 ~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
.+|++|.+. .++.++||+|+|++|
T Consensus 462 ~~GirIKt~~g~gG~v~nI~~~ni~m 487 (608)
T 2uvf_A 462 DIGLRAKSTSTIGGGARNVTFRNNAM 487 (608)
T ss_dssp SEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred CceEEEeeecCCCceEECcEEEeeEE
Confidence 999999763 345678888888765
|
| >1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=129.80 Aligned_cols=137 Identities=8% Similarity=0.164 Sum_probs=112.1
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC---CCc
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP---AYW 171 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~ 171 (268)
.++.+..++|++|+|- ++... ....+.+..|+|++|+|+++.+. ...
T Consensus 128 ~~i~~~~~~nv~I~~i-ti~ns-----------------------------p~~~i~i~~~~nv~I~n~~I~~~d~~ntD 177 (422)
T 1rmg_A 128 RILRLTDVTHFSVHDI-ILVDA-----------------------------PAFHFTMDTCSDGEVYNMAIRGGNEGGLD 177 (422)
T ss_dssp EEEEEEEEEEEEEEEE-EEECC-----------------------------SSCSEEEEEEEEEEEEEEEEECCSSTTCC
T ss_pred eEEEEcccceEEEECe-EEECC-----------------------------CceEEEEeCcCCEEEEeEEEECCCCCCCc
Confidence 4677889999999993 33211 12358999999999999999872 355
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEecCCceeeecCCC--CCeecEEEEceEEecCCccE
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDTGDDAICPKTYT--GPLYNLTATDSWIRTKSSAI 248 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~gDD~i~i~s~~--~~~~nv~v~n~~~~~~~~gi 248 (268)
|+++.. +||+|+||.|.. ..|+|.+.+ ++||+|+||.+..+. +|+++|.. +.++||+|+||++.+..+|+
T Consensus 178 Gidi~~-~nV~I~n~~i~~-----gDD~Iai~s~~~nI~I~n~~~~~~~-GisIGS~g~~~~v~nV~v~n~~~~~~~~Gi 250 (422)
T 1rmg_A 178 GIDVWG-SNIWVHDVEVTN-----KDECVTVKSPANNILVESIYCNWSG-GCAMGSLGADTDVTDIVYRNVYTWSSNQMY 250 (422)
T ss_dssp SEEEEE-EEEEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEESSS-EEEEEEECTTEEEEEEEEEEEEEESSSCSE
T ss_pred cEeecC-CeEEEEeeEEeC-----CCCeEEeCCCCcCEEEEeEEEcCCc-ceeecccCCCCcEEEEEEEeEEEeccceEE
Confidence 899998 999999999986 789999986 999999999988775 99998753 46999999999999999999
Q ss_pred Eeeee-eeeeEEeEEEEeeEC
Q 038762 249 KLGSA-SWFDFKALVFDNITI 268 (268)
Q Consensus 249 ~ig~~-~~~~~~ni~~~ni~i 268 (268)
.|.+. ..+.++||+|+|++|
T Consensus 251 ~Ikt~~g~G~v~nI~~~NI~~ 271 (422)
T 1rmg_A 251 MIKSNGGSGTVSNVLLENFIG 271 (422)
T ss_dssp EEEEBBCCEEEEEEEEEEEEE
T ss_pred EEEecCCCcEEEEEEEEeEEE
Confidence 88642 235788888888875
|
| >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-14 Score=128.57 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=115.5
Q ss_pred CcE-EEECCCeEEEeeEEecC---ceEEEEcCCeeEEeCCCC------CCCCCC---CC----ceEEEEEEeeeccEEEe
Q 038762 47 PCQ-VRFPPGEYLTATIRLKS---HVTLNIHEDATLLGGPRI------EDYPEE---SS----RWYVVLAENATDVGITG 109 (268)
Q Consensus 47 g~~-v~ip~G~Y~~~~l~l~s---~~~l~~~~ga~l~~~~~~------~~~~~~---~~----~~~~i~~~~~~nv~I~G 109 (268)
+.+ |++++|.|+.+++.+.+ +++|.+ .++|.+.+.. ..|+.. .. -|.++.+.+|+||.|+|
T Consensus 222 ~~~~L~l~~GA~L~gs~~~~~~~~nv~ItG--~GtIDG~G~~ww~~~~~~~~~~~~~rp~~i~~~~~~~~~~c~nV~I~G 299 (549)
T 1x0c_A 222 SVTWVYFAPGAYVKGAVEFLSTASEVKASG--HGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNG 299 (549)
T ss_dssp TCCEEEECTTEEEESCEEECCCSSEEEEES--SCEEECTTSCTTEEGGGTTEECGGGCSCCCCSEEEECCSSCEEEEEES
T ss_pred CCCeEecCCCCEEEEEEEEecCceeEEEEe--eEEEECCCceecccCcccccccccCCCceEEEeeccccCCceEEEEEC
Confidence 556 99999999988888875 566654 4788886531 112110 00 11122338899999999
Q ss_pred ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEe-cc-cc--EEEEeEEEeCCC---CcEEEEeeeecEE
Q 038762 110 GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFL-GC-RN--VNVWNVRLREPA---YWCLHIVRCDNTF 182 (268)
Q Consensus 110 ~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~n--v~I~~v~i~n~~---~~~i~~~~~~nv~ 182 (268)
....+. .+ ..+++. .| ++ ++|+++++.++. ..|+.+. +||+
T Consensus 300 iti~Ns---p~---------------------------w~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~--~nV~ 347 (549)
T 1x0c_A 300 VTVSAP---PF---------------------------NSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY--PGTI 347 (549)
T ss_dssp CEEECC---SS---------------------------CSEEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC--TTCE
T ss_pred cEEECC---Cc---------------------------eeEEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc--CCEE
Confidence 543332 22 236644 45 69 999999998643 3477777 9999
Q ss_pred EEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC-ce-eeecCCCCCeecEEEEceEEecCC
Q 038762 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD-DA-ICPKTYTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 183 i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD-D~-i~i~s~~~~~~nv~v~n~~~~~~~ 245 (268)
|+||.|.. ..|+|.+.+ +||+|+||.+..+. -+ |++++..+.++||+|+||++.++.
T Consensus 348 I~n~~i~~-----gDDcIaIks-~NI~I~n~~~~~~~g~~~IsiGs~~~~V~NV~v~n~~i~~s~ 406 (549)
T 1x0c_A 348 LQDVFYHT-----DDDGLKMYY-SNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNVDVIHQA 406 (549)
T ss_dssp EEEEEEEE-----SSCCEECCS-SSEEEEEEEEEECSSSCSEECCBSCCCEEEEEEEEEEEEECC
T ss_pred EEeeEEeC-----CCCEEEECC-CCEEEEeeEEEcCCCCceEEECCCCCcEEEEEEEeeEEECcc
Confidence 99999997 678888876 89999999998754 35 899988889999999999998765
|
| >3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=117.75 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=61.9
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEe-eEEecCceEEEEcCCeeEEeCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTA-TIRLKSHVTLNIHEDATLLGGP 82 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~-~l~l~s~~~l~~~~ga~l~~~~ 82 (268)
+...+++|+||||++||.+|||+|||+||+++.. +.+||||+|+|++. +|.+++++.|.++.=++|.+..
T Consensus 396 ~~~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa~~---g~~v~~P~G~Y~vt~Ti~ip~~~~ivG~~~~~I~~~G 466 (758)
T 3eqn_A 396 APSDFVSVRSQGAKGDGHTDDTQAIKNVFAKYAG---CKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTG 466 (758)
T ss_dssp CGGGEEETTTTTCCCEEEEECHHHHHHHHHHHTT---TSEEECCSEEEEESSCEEECTTCEEECCSSEEEEECS
T ss_pred cccceEEeeeccccCCCCchhHHHHHHHHHHhcC---CCEEEECCCEeEECCeEEcCCCCEEEecccceEecCC
Confidence 4456999999999999999999999999996544 78999999999874 8999999999999778888754
|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-11 Score=108.41 Aligned_cols=175 Identities=9% Similarity=0.023 Sum_probs=104.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEe------cCceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEEEEee
Q 038762 31 TAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL------KSHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVLAENA 102 (268)
Q Consensus 31 t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l------~s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~~~~~ 102 (268)
.+.||+||+++++ |.+|+|++|+|.-..+.+ ..+++|..+. .++|.+.. .+. ...
T Consensus 31 ~~~Lq~Ai~~A~p---GDtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G~~-------------~l~-i~g 93 (506)
T 1dbg_A 31 NETLYQVVKEVKP---GGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDA-------------KVE-LRG 93 (506)
T ss_dssp HHHHHHHHHHCCT---TCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEESC-------------EEE-ECS
T ss_pred HHHHHHHHHhCCC---CCEEEECCCEEecceEEEecCCcCCCCEEEECCCCCccEEeCCc-------------eEE-EEc
Confidence 5789999999988 899999999997446776 4678888762 35555531 111 134
Q ss_pred eccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcE--EEEe----
Q 038762 103 TDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWC--LHIV---- 176 (268)
Q Consensus 103 ~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~--i~~~---- 176 (268)
++++|+| -+|.+.+..... +. ...+..+.+. .++++|++++|++... + +.+.
T Consensus 94 ~~v~i~G-L~i~~~~~~~~~-~~------------------~~~~~~iav~-G~~~~I~nn~I~~~~~-gd~i~i~~~~~ 151 (506)
T 1dbg_A 94 EHLILEG-IWFKDGNRAIQA-WK------------------SHGPGLVAIY-GSYNRITACVFDCFDE-ANSAYITTSLT 151 (506)
T ss_dssp SSEEEES-CEEEEECCCTTT-CC------------------TTSCCSEEEC-SSSCEEESCEEESCCS-SCSCSEEECCC
T ss_pred CCEEEEC-eEEECCCcceee-ee------------------cccccceEEe-cCCeEEEeeEEEcCCC-CceeeEeeccc
Confidence 5666666 344432221000 00 0012234444 5788899999987632 2 3332
Q ss_pred ----eeecEEEEeEEEEcCCCCCCCc----eeeecCc-------ccEEEEeeEEecC------CceeeecCCCCCeecEE
Q 038762 177 ----RCDNTFIRDMSIYGDFNTPNND----GIDIEDS-------NNTVITRVQIDTG------DDAICPKTYTGPLYNLT 235 (268)
Q Consensus 177 ----~~~nv~i~~~~i~~~~~~~~~D----Gi~~~~~-------~~v~I~n~~i~~g------DD~i~i~s~~~~~~nv~ 235 (268)
.+++.+|+++.|.......... |+++++. .+.+|+++.|... -+.+.++...-.+++.+
T Consensus 152 ~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~ 231 (506)
T 1dbg_A 152 EDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCL 231 (506)
T ss_dssp TTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCE
T ss_pred ceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccCCeEEeCcEEcccccCCCccccEEEEEEecccCCcE
Confidence 5667789999998754333333 8888763 5788999988742 34566653322344555
Q ss_pred EEceEEecC
Q 038762 236 ATDSWIRTK 244 (268)
Q Consensus 236 v~n~~~~~~ 244 (268)
|++|+|..+
T Consensus 232 VenN~f~~~ 240 (506)
T 1dbg_A 232 VDSNLFMRQ 240 (506)
T ss_dssp EESCEEEEE
T ss_pred EECCEEEec
Confidence 555555543
|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=102.86 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=121.0
Q ss_pred CCceeEEeeecccc-CCC-CchhHHHHHHHHHhCCCCCCCcEEEECCCeEE-------EeeEEec-C-----ceEEEEcC
Q 038762 10 THIHIHSVIDFGAK-GDG-IHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL-------TATIRLK-S-----HVTLNIHE 74 (268)
Q Consensus 10 ~~~~~~~v~dyga~-~dg-~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~-------~~~l~l~-s-----~~~l~~~~ 74 (268)
+.++.+.|..-|.. ++| .....-.||+|++++++ |.+|+|.+|+|. ...+.+. + .++|...+
T Consensus 12 ~~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~p---GdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~ 88 (400)
T 1ru4_A 12 STKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNP---GELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAAN 88 (400)
T ss_dssp CCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCT---TCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGG
T ss_pred cCccEEEEcCCCCCCCCCccccCCccHHHHHhhCCC---CCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEec
Confidence 55667777654422 233 22111179999999987 899999999998 2456653 3 48888875
Q ss_pred --CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEE
Q 038762 75 --DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGF 152 (268)
Q Consensus 75 --ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (268)
.++|. ...+..-.... ... |.. ..++++|+| -+|...+ ..+|.+
T Consensus 89 g~~~vI~-~~~~~g~~~~~-~~~-i~i-~~~~~~i~g-l~I~n~g-----------------------------~~GI~v 134 (400)
T 1ru4_A 89 CGRAVFD-FSFPDSQWVQA-SYG-FYV-TGDYWYFKG-VEVTRAG-----------------------------YQGAYV 134 (400)
T ss_dssp GCCEEEE-CCCCTTCCCTT-CCS-EEE-CSSCEEEES-EEEESCS-----------------------------SCSEEE
T ss_pred CCCCEEe-CCccCCccccc-eeE-EEE-ECCeEEEEe-EEEEeCC-----------------------------CCcEEE
Confidence 45665 32211100000 011 222 456666666 2332211 114666
Q ss_pred eccccEEEEeEEEeCCCCcEEEEeeee-cEEEEeEEEEcCCCC----CCCceeeecCc--ccEEEEeeEEec-CCceeee
Q 038762 153 LGCRNVNVWNVRLREPAYWCLHIVRCD-NTFIRDMSIYGDFNT----PNNDGIDIEDS--NNTVITRVQIDT-GDDAICP 224 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~~~i~~~~~~-nv~i~~~~i~~~~~~----~~~DGi~~~~~--~~v~I~n~~i~~-gDD~i~i 224 (268)
.. .+.+|+++++++....||.+.... +.+|++|.+....+. .+.|||.+..+ .+.+|++|++.. .||++.+
T Consensus 135 ~g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl 213 (400)
T 1ru4_A 135 IG-SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDL 213 (400)
T ss_dssp CS-SSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEEC
T ss_pred eC-CCcEEEeEEEECCCceeEEEEcccCCeEEEceEEEcccCccccCcccceEEEEecccCCeEEECCEEeecCCCcEEE
Confidence 65 677899999998876688888754 888889999865431 35788887643 577888888765 7888877
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
.. ....++|+||..+.
T Consensus 214 ~~---~~~~v~i~nn~a~~ 229 (400)
T 1ru4_A 214 FD---SPQKVVIENSWAFR 229 (400)
T ss_dssp TT---CCSCCEEESCEEES
T ss_pred Ee---cCCCEEEEeEEEEC
Confidence 64 34556777777653
|
| >1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=104.36 Aligned_cols=113 Identities=14% Similarity=0.030 Sum_probs=86.9
Q ss_pred eccccEEEEeE----EEeCC-----CCcEEEEeeeecEEEEeEEEEcCCCCC--------CCceeeecCcccEEEEeeEE
Q 038762 153 LGCRNVNVWNV----RLREP-----AYWCLHIVRCDNTFIRDMSIYGDFNTP--------NNDGIDIEDSNNTVITRVQI 215 (268)
Q Consensus 153 ~~~~nv~I~~v----~i~n~-----~~~~i~~~~~~nv~i~~~~i~~~~~~~--------~~DGi~~~~~~~v~I~n~~i 215 (268)
.+.+|+.|.+- ++... ....+.+..|+|++|+++++.+.+.-. ++||+++ .|++|+|+||.|
T Consensus 106 ~~~~nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w~ih~s~~V~i~NtDGi~i-~s~nV~I~n~~I 184 (464)
T 1h80_A 106 NIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH-WSRNGIIERIKQ 184 (464)
T ss_dssp SCEEEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEE-EEEEEEEEEEEE
T ss_pred cCccceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccceEeeceeeeeecCCCcee-eccCEEEeceEE
Confidence 56788888775 44321 122578899999999999998754321 5689888 889999999999
Q ss_pred ecCCceeeecCCCCCeecEEEEceEEecCCccEEeee-------eeeeeEEeEEEEeeEC
Q 038762 216 DTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGS-------ASWFDFKALVFDNITI 268 (268)
Q Consensus 216 ~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~-------~~~~~~~ni~~~ni~i 268 (268)
.++|||+.. .....++||+|+||+|.+ .+|++|.+ .....++||+|+|++|
T Consensus 185 ~~gddgiGs-~~~~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~ 242 (464)
T 1h80_A 185 NNALFGYGL-IQTYGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRC 242 (464)
T ss_dssp ESCCTTCEE-EEESEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEE
T ss_pred ecCCCeEEe-cccCCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEE
Confidence 999998852 112469999999999999 78887743 3556899999999876
|
| >3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=99.05 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=88.8
Q ss_pred cccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCCceeeecCCC--CCe
Q 038762 155 CRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGDDAICPKTYT--GPL 231 (268)
Q Consensus 155 ~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gDD~i~i~s~~--~~~ 231 (268)
|+||+|+|+++++..-.+|.+..|+||+|+||.+..+......-||.+. ++++|+|+||.+.+.+.++.||+.. +..
T Consensus 182 S~NV~I~Nc~I~~tGDDcIaIksseNI~I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt~~GIrIKt~~~~~~v 261 (609)
T 3gq8_A 182 SENIWIENCEATGFGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHGDAPAA 261 (609)
T ss_dssp CEEEEEESCEEESCSSCSEEECSCEEEEEESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESSSEEEEEEECTTSCCC
T ss_pred ceeEEEEeeEEEecCCCEEEecCCeeEEEEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECCCCEEEEEecCCCCcc
Confidence 8999999999988777789999999999999999875433456789887 4579999999999988999999754 468
Q ss_pred ecEEEEceEEecCCc--cEE-eeee-----eeeeEEeEEEEeeE
Q 038762 232 YNLTATDSWIRTKSS--AIK-LGSA-----SWFDFKALVFDNIT 267 (268)
Q Consensus 232 ~nv~v~n~~~~~~~~--gi~-ig~~-----~~~~~~ni~~~ni~ 267 (268)
+||.|++|....... .++ +|.. ......||.+.|++
T Consensus 262 ~NV~I~n~vs~~nvrsyn~r~iG~~~a~dp~s~~a~nV~l~n~~ 305 (609)
T 3gq8_A 262 YNISINGHMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLV 305 (609)
T ss_dssp EEEEEEEEEEESCSEEEEEEETTSCSTTSCCCSSCEEEEEEEEE
T ss_pred ccEEEECCEeecCceEecceEEccccCCCCCcceecceEeecce
Confidence 999999988776544 232 2332 23357888888886
|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-07 Score=79.19 Aligned_cols=191 Identities=9% Similarity=-0.017 Sum_probs=106.8
Q ss_pred HHHHHHHHhCCCCCCCcEEEECCCeEEE---eeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEE
Q 038762 32 AAIQSAIDACPPGNKPCQVRFPPGEYLT---ATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGIT 108 (268)
Q Consensus 32 ~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~---~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 108 (268)
+.|+.|+.+- ++ .+++-.|++.+ ..|.+.|++||.+....+|.+ ..|.+.+++||.|+
T Consensus 36 ~dLr~al~~~----~P-riIvv~G~I~~~~~~~l~v~snkTI~G~ga~~I~G--------------~Gi~I~~a~NVIIr 96 (340)
T 3zsc_A 36 EELEKYTTAE----GK-YVIVVDGTIVFEPKREIKVLSDKTIVGINDAKIVG--------------GGLVIKDAQNVIIR 96 (340)
T ss_dssp HHHHHHHTSS----SC-EEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEE--------------EEEEEESCEEEEEE
T ss_pred HHHHHHHhCC----CC-EEEEECcEEEeCCcceEEecCCCEEEeccCcEEec--------------CceEEEcCceEEEe
Confidence 3488888642 23 44445788754 467788888888864333433 12344677788777
Q ss_pred eccEEecCCcc-cccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEe-eeecEEEEeE
Q 038762 109 GGGVVDGQAMK-FVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIV-RCDNTFIRDM 186 (268)
Q Consensus 109 G~G~i~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~-~~~nv~i~~~ 186 (268)
.- .|...... -|.. .....-+|.+..++||.|++|++....--.+.+. .++++||+++
T Consensus 97 nl-~i~~~~~~~~~~~-------------------~~~~~DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn 156 (340)
T 3zsc_A 97 NI-HFEGFYMEDDPRG-------------------KKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWN 156 (340)
T ss_dssp SC-EEECCCCTTCTTS-------------------CSSCCCSEEEESCEEEEEESCEEESCSSCSEEEETTCEEEEEESC
T ss_pred Ce-EEECCccccCccC-------------------CcCCCCeEEEecCCcEEEEeeeeccCCccceEEecCCceEEEECc
Confidence 73 33321110 0100 0112346888888888888888887754456665 5788888888
Q ss_pred EEEcCCCC---CCCcee---eecCcccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEec----------C-CccE
Q 038762 187 SIYGDFNT---PNNDGI---DIEDSNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRT----------K-SSAI 248 (268)
Q Consensus 187 ~i~~~~~~---~~~DGi---~~~~~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~----------~-~~gi 248 (268)
.|...... ...|+- .-.+..+|++.++.|.+ ..-.=.+.- -.+++.||++.+ - .+++
T Consensus 157 ~f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r~-----G~~Hv~NN~~~n~~~~~~~~~~~~~yai 231 (340)
T 3zsc_A 157 KFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRF-----GMAHVFNNFYSMGLRTGVSGNVFPIYGV 231 (340)
T ss_dssp EEESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEES-----SEEEEESCEEECCCCCSCSSCCSCCEEE
T ss_pred EeccCceeeEeCcCCCCccccccCCcEEEEECeEecCCCCCCCcccC-----CeEEEEccEEECCccccccccceeeeeE
Confidence 88753211 011111 00111367777777754 111111111 146778888876 1 2245
Q ss_pred EeeeeeeeeEEeEEEEee
Q 038762 249 KLGSASWFDFKALVFDNI 266 (268)
Q Consensus 249 ~ig~~~~~~~~ni~~~ni 266 (268)
..+......+|+.+|+++
T Consensus 232 ~~~~~a~i~~E~N~F~~~ 249 (340)
T 3zsc_A 232 ASAMGAKVHVEGNYFMGY 249 (340)
T ss_dssp EEETTCEEEEESCEEECS
T ss_pred ecCCCCEEEEECcEEECC
Confidence 444555667777777764
|
| >2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-08 Score=84.99 Aligned_cols=111 Identities=12% Similarity=-0.006 Sum_probs=93.0
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEee-eecEEEEeEEEEcCCCCCCCceeee--------cCcccEEEEeeEEec
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVR-CDNTFIRDMSIYGDFNTPNNDGIDI--------EDSNNTVITRVQIDT 217 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~-~~nv~i~~~~i~~~~~~~~~DGi~~--------~~~~~v~I~n~~i~~ 217 (268)
..+|.+..+++.+|++.++.+....|+++.. |++++|+++.+.. +.+|+.+ ..+++++|+++.+..
T Consensus 172 ~dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~i~~-----~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~ 246 (377)
T 2pyg_A 172 LDGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYG-----NGSSGLVVQRGLEDLALPSNILIDGGAYYD 246 (377)
T ss_dssp SCSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEES-----CSSCSEEEECCSSCCCCCEEEEEESCEEES
T ss_pred CCceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCEEEC-----ccCceEEEeccccCCCCCccEEEECCEEEc
Confidence 4468888999999999988777788999888 9999999999996 6677777 678899999999876
Q ss_pred -CCceeeecCCCCCeecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEee
Q 038762 218 -GDDAICPKTYTGPLYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 218 -gDD~i~i~s~~~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~ni 266 (268)
..-++.+.. +++++|++|++.++ ..||.+.......++|++|+++
T Consensus 247 n~~~Gi~~~~----~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~n 293 (377)
T 2pyg_A 247 NAREGVLLKM----TSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDN 293 (377)
T ss_dssp CSSCSEEEEE----EEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESC
T ss_pred CccCceEecc----ccCeEEECCEEECCCCceEEEecCCCcEEECcEEECC
Confidence 566788876 89999999999987 7899987666667777777654
|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-07 Score=81.12 Aligned_cols=175 Identities=12% Similarity=0.114 Sum_probs=94.5
Q ss_pred hHHHHHHHHHhCCCCCCCc----EEEECCCeEEEeeEEec---CceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEEEE
Q 038762 30 DTAAIQSAIDACPPGNKPC----QVRFPPGEYLTATIRLK---SHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVLAE 100 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~----~v~ip~G~Y~~~~l~l~---s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~~~ 100 (268)
+-..||+||+++++ +. +|+|+||+|. +.+.++ .+++|.+++ .++|.+.....+-...... ..|. .
T Consensus 18 ~f~TIq~AI~aap~---~~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s-atv~-v 91 (319)
T 1gq8_A 18 DYKTVSEAVAAAPE---DSKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNS-ATVA-A 91 (319)
T ss_dssp SBSSHHHHHHHSCS---SCSSCEEEEECSEEEE-CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGG-CSEE-E
T ss_pred CccCHHHHHHhccc---cCCceEEEEEcCCeEe-eeeeccCCCccEEEEEcCCCccEEEecccccCCCCccce-EEEE-E
Confidence 34569999999987 44 9999999995 567774 468998875 4566654321110000000 1111 2
Q ss_pred eeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeec
Q 038762 101 NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDN 180 (268)
Q Consensus 101 ~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~n 180 (268)
..+++++++- +|...... . .....++.. .++++.+++|.|... ++++.....+.
T Consensus 92 ~a~~f~~~nl-t~~Nt~g~-------~----------------~~qAvAl~v-~~d~~~f~~c~f~g~-QDTLy~~~~r~ 145 (319)
T 1gq8_A 92 VGAGFLARDI-TFQNTAGA-------A----------------KHQAVALRV-GSDLSAFYRCDILAY-QDSLYVHSNRQ 145 (319)
T ss_dssp CSTTCEEEEE-EEEECCCG-------G----------------GCCCCSEEE-CCTTEEEEEEEEECS-TTCEEECSSEE
T ss_pred ECCCEEEEEe-EeEccCCC-------c----------------CCceEEEEe-cCCcEEEEEeEECcc-ceeeeecCccE
Confidence 3455555552 22221100 0 001223444 467777777777755 34566655553
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC------ceeeecC--CCCCeecEEEEceEEecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD------DAICPKT--YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD------D~i~i~s--~~~~~~nv~v~n~~~~~~ 244 (268)
.+++|.|.. ..|-|. .+ ....+++|.|..-. ..|.-.+ .......++|.||++.+.
T Consensus 146 -~~~~c~I~G-----~vDFIf-G~-~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~ 209 (319)
T 1gq8_A 146 -FFINCFIAG-----TVDFIF-GN-AAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGAT 209 (319)
T ss_dssp -EEESCEEEE-----SSSCEE-ES-CEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEEC
T ss_pred -EEEecEEEe-----eeeEEe-cC-CcEEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecC
Confidence 777777775 444332 22 24677777776521 1222111 112455788888888754
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=81.16 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhCCCCCCCc----EEEECCCeEEEeeEEec---CceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEEEE
Q 038762 30 DTAAIQSAIDACPPGNKPC----QVRFPPGEYLTATIRLK---SHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVLAE 100 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~----~v~ip~G~Y~~~~l~l~---s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~~~ 100 (268)
+-..||+||+++++ +. +|+|+||+|. +.+.++ .+++|.+++ .++|.+.....+-...... ..+. .
T Consensus 14 ~f~TIq~AI~aap~---~~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s-atv~-v 87 (317)
T 1xg2_A 14 DYQTLAEAVAAAPD---KSKTRYVIYVKRGTYK-ENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS-ATLA-A 87 (317)
T ss_dssp SBSSHHHHHHHSCS---SCSSCEEEEECSEEEE-CCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG-CSEE-E
T ss_pred CcccHHHHHhhccc---CCCceEEEEEcCCEEe-eeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce-eEEE-E
Confidence 34569999999987 44 9999999994 567774 569999885 4666654321110000000 1111 2
Q ss_pred eeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeec
Q 038762 101 NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDN 180 (268)
Q Consensus 101 ~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~n 180 (268)
..+++++++- +|...... . .....+++. .++++.+++|.|... +..+.....++
T Consensus 88 ~a~~f~~~~l-t~~Nt~g~-------~----------------~~qAvAl~v-~~d~~~f~~c~f~g~-QDTLy~~~~r~ 141 (317)
T 1xg2_A 88 VGQGFILQDI-CIQNTAGP-------A----------------KDQAVALRV-GADMSVINRCRIDAY-QDTLYAHSQRQ 141 (317)
T ss_dssp CSTTCEEESC-EEEECCCG-------G----------------GCCCCSEEE-CCTTEEEESCEEECS-TTCEEECSSEE
T ss_pred ECCCEEEEEe-EEecccCC-------c----------------cCceEEEEE-eCCcEEEEEeEeCcc-ccceeecCccE
Confidence 4555555552 22221100 0 001223444 467777777777765 34566665554
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC------ceeeecC--CCCCeecEEEEceEEecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD------DAICPKT--YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD------D~i~i~s--~~~~~~nv~v~n~~~~~~ 244 (268)
.+++|.|.. ..|-|- .+ ....+++|.|..-. ..|.-.+ .......++|.||++.+.
T Consensus 142 -~~~~c~I~G-----~vDFIf-G~-~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~ 205 (317)
T 1xg2_A 142 -FYRDSYVTG-----TVDFIF-GN-AAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIAS 205 (317)
T ss_dssp -EEESCEEEE-----SSSCEE-EC-CEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEEC
T ss_pred -EEEeeEEEe-----ceeEEc-CC-ceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecC
Confidence 777777775 344332 22 24777888876521 1222111 112455788888988754
|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-07 Score=79.38 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=76.4
Q ss_pred EEEEeccccEEEEeEEEeCCC---------------CcEEEEeeeecEEEEeEEEEcCCCC------------CCCce-e
Q 038762 149 LVGFLGCRNVNVWNVRLREPA---------------YWCLHIVRCDNTFIRDMSIYGDFNT------------PNNDG-I 200 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~---------------~~~i~~~~~~nv~i~~~~i~~~~~~------------~~~DG-i 200 (268)
.|.+..++||.|+|++|++.. ..+|.+..+++|.|++|++...... -..|| +
T Consensus 97 gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~ 176 (355)
T 1pcl_A 97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL 176 (355)
T ss_pred EEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccce
Confidence 577778999999999998531 3478888999999999999752100 01466 3
Q ss_pred eec-CcccEEEEeeEEecCCceeeecCCCC------CeecEEEEceEEecCC-ccEEeeeeeeeeEEeEEEEe
Q 038762 201 DIE-DSNNTVITRVQIDTGDDAICPKTYTG------PLYNLTATDSWIRTKS-SAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 201 ~~~-~~~~v~I~n~~i~~gDD~i~i~s~~~------~~~nv~v~n~~~~~~~-~gi~ig~~~~~~~~ni~~~n 265 (268)
++. ++.+|+|++|.|...+-+.-+++... ...+|++.+|.|.+.. +.-++.... ..+-|..++|
T Consensus 177 Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~G~-~Hv~NN~~~~ 248 (355)
T 1pcl_A 177 DIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGS-IHAYNNVYLG 248 (355)
T ss_pred eeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceecce-EEEEcceEEc
Confidence 455 67899999999988766665665432 2347999999997542 222222111 3455555543
|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-07 Score=78.87 Aligned_cols=118 Identities=10% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEEEe-ccccEEEEeEEEeCCC----CcEEEEe-----eeecEEEEeEEEEcCCC------CCCCce-eeec-CcccEEE
Q 038762 149 LVGFL-GCRNVNVWNVRLREPA----YWCLHIV-----RCDNTFIRDMSIYGDFN------TPNNDG-IDIE-DSNNTVI 210 (268)
Q Consensus 149 ~i~~~-~~~nv~I~~v~i~n~~----~~~i~~~-----~~~nv~i~~~~i~~~~~------~~~~DG-i~~~-~~~~v~I 210 (268)
+|.+. .++||.|+|++|++.. ..+|.+. .+++|.|++|++..... ....|| +++. ++.+|+|
T Consensus 87 gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTI 166 (330)
T 2qy1_A 87 GIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTV 166 (330)
T ss_dssp EEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEE
T ss_pred eEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEE
Confidence 45555 6667777777776543 3456666 46677777777753110 011133 3443 4556777
Q ss_pred EeeEEecCCceeeecCCCCC----ee----------------------cEEEEceEEecC-CccEEeeeeeeeeEEeEEE
Q 038762 211 TRVQIDTGDDAICPKTYTGP----LY----------------------NLTATDSWIRTK-SSAIKLGSASWFDFKALVF 263 (268)
Q Consensus 211 ~n~~i~~gDD~i~i~s~~~~----~~----------------------nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~ 263 (268)
++|.|...+-+.-+++.... .. .++|.||++.+- .+++..+......+|+.+|
T Consensus 167 Snn~f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F 246 (330)
T 2qy1_A 167 SYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYF 246 (330)
T ss_dssp ESCEEEEEEECCEESSSTTCGGGGGCEEEEESCEEEEEEECTTEEESSEEEEESCEEEEECSCSEEEETTCEEEEESCEE
T ss_pred EcceeccCCeEEEECCCCccccCCCceEEEECcEEcCCCCCCCceecceEEEEeeEEEcccceEeccCCCcEEEEEccEE
Confidence 77776543322223321100 01 355666666532 3455554445556677777
Q ss_pred Eee
Q 038762 264 DNI 266 (268)
Q Consensus 264 ~ni 266 (268)
++.
T Consensus 247 ~~~ 249 (330)
T 2qy1_A 247 ENI 249 (330)
T ss_dssp EEE
T ss_pred ECC
Confidence 664
|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=79.23 Aligned_cols=195 Identities=9% Similarity=0.031 Sum_probs=110.6
Q ss_pred HHHHHHHhCCCCCCCcEEEEC-CCeEEE-eeEEecCceEEEEcC-CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEe
Q 038762 33 AIQSAIDACPPGNKPCQVRFP-PGEYLT-ATIRLKSHVTLNIHE-DATLLGGPRIEDYPEESSRWYVVLAENATDVGITG 109 (268)
Q Consensus 33 aiq~Ai~~~~~~~~g~~v~ip-~G~Y~~-~~l~l~s~~~l~~~~-ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G 109 (268)
.|+.|+++.. +.+|+|- .|++.. +.|.+.|++||.+.. +++|.+.. ..+.+.+++||.|++
T Consensus 57 sLr~av~~~~----P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~ga~~~i~G~G------------~gi~i~~a~NVIIrn 120 (346)
T 1pxz_A 57 TLRYGATREK----ALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGG------------PCLFMRKVSHVILHS 120 (346)
T ss_dssp SHHHHHHCSS----CEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTS------------CCEEEESCEEEEEES
T ss_pred hhHHHhccCC----CeEEEEcCCcEEecCccEEecCCeEEEccCCceEEeCCc------------ceEEEEccCCEEEEe
Confidence 4888988643 3456654 567854 578888999988763 24444310 112335677887777
Q ss_pred ccEEecCCcc----cccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEE-eeeecEEEE
Q 038762 110 GGVVDGQAMK----FVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHI-VRCDNTFIR 184 (268)
Q Consensus 110 ~G~i~g~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~-~~~~nv~i~ 184 (268)
- .|...... .|.......+.. .....-+|.+..++|+.|++|+|..+.--.+.+ ..++++||+
T Consensus 121 l-~i~~~~~~~~~~I~~~~~~~~g~~-----------~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~id~~~~s~~vTIS 188 (346)
T 1pxz_A 121 L-HIHGCNTSVLGDVLVSESIGVEPV-----------HAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITIS 188 (346)
T ss_dssp C-EEECCCCCCSEEEEEETTTEEEEE-----------CCCCCCSEEEESCEEEEEESCEEECCSSEEEEEESSCEEEEEE
T ss_pred e-EEEeeccCCCceEEeccCcccccc-----------cCCCCCEEEEecCceEEEEeeEEecCCCCcEeeccCcceEEEE
Confidence 3 33321110 011100000000 012345788889999999999998875433445 588899999
Q ss_pred eEEEEcCCCCCCCceeeecCc--------ccEEEEeeEE-ec-CCceeeecCCCCCeecEEEEceEEecCC-ccEEeeee
Q 038762 185 DMSIYGDFNTPNNDGIDIEDS--------NNTVITRVQI-DT-GDDAICPKTYTGPLYNLTATDSWIRTKS-SAIKLGSA 253 (268)
Q Consensus 185 ~~~i~~~~~~~~~DGi~~~~~--------~~v~I~n~~i-~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~~-~gi~ig~~ 253 (268)
++.|.. ...++.+..+ .+|++.++.| .+ ..-.-.+.. ..++|.||++.+.. .++..+..
T Consensus 189 nn~f~~-----H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~-----g~~hv~NN~~~~~~~~~i~~~~~ 258 (346)
T 1pxz_A 189 NNHFFN-----HHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY-----GLVHVANNNYDPWNIYAIGGSSN 258 (346)
T ss_dssp SCEEES-----EEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEES-----SEEEEESCEECCCSSCSEEEESC
T ss_pred eeEEec-----CCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEec-----ceEEEEeeEEEcccceEEeccCC
Confidence 999985 2334444332 3688888888 43 211111221 46778888876532 44544444
Q ss_pred eeeeEEeEEEEe
Q 038762 254 SWFDFKALVFDN 265 (268)
Q Consensus 254 ~~~~~~ni~~~n 265 (268)
....+|+.+|++
T Consensus 259 ~~i~~egN~F~~ 270 (346)
T 1pxz_A 259 PTILSEGNSFTA 270 (346)
T ss_dssp CEEEEESCEEEC
T ss_pred ceEEEECCEEEC
Confidence 455666666654
|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=81.29 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEec-CceEEEEcCC--eeEEeCCCCCCCCCCCCce-----EEEEEE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK-SHVTLNIHED--ATLLGGPRIEDYPEESSRW-----YVVLAE 100 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~-s~~~l~~~~g--a~l~~~~~~~~~~~~~~~~-----~~i~~~ 100 (268)
-+-..||+||++++.....-+|+|+||+|. +.+.+. .+++|.+++. ++|.+.............+ ..+ ..
T Consensus 42 g~f~TIq~Ai~aa~~~~~~~~I~I~~G~Y~-E~v~I~k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv-~V 119 (364)
T 3uw0_A 42 DEFSSINAALKSAPKDDTPFIIFLKNGVYT-ERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTV-LV 119 (364)
T ss_dssp --CCCHHHHHHHSCSSSSCEEEEECSEEEC-CCEEECSTTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSE-EE
T ss_pred CCcccHHHHHhhcccCCCcEEEEEeCCEEE-EEEEEcCCeEEEEecCCCCeEEEccccccccccccccccccCeeEE-EE
Confidence 345789999999987212239999999995 345554 4699998752 5555532111000000000 111 12
Q ss_pred eeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEe-ccccEEEEeEEEeCCCCcEEEEeeee
Q 038762 101 NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFL-GCRNVNVWNVRLREPAYWCLHIVRCD 179 (268)
Q Consensus 101 ~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~nv~I~~v~i~n~~~~~i~~~~~~ 179 (268)
..+++.+++- +|...... ... ... ...++-.....-..++++. ..+...+.+|.|... +..+......
T Consensus 120 ~a~~f~a~ni-tf~Nt~~~--~~~-~~~------~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~-QDTLy~~~~g 188 (364)
T 3uw0_A 120 NAPNFTAENL-TIRNDFDF--PAN-KKK------ADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGY-QDTLYSKTGS 188 (364)
T ss_dssp CSTTCEEEEE-EEEECCCH--HHH-HHS------CTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECS-BSCEEECTTC
T ss_pred ECCCEEEEee-eeEcCCcc--ccc-ccc------cccccccccCCccEEEEEecCCCeEEEEeeEEEec-ccceEeCCCC
Confidence 4455555552 22211100 000 000 0000000000112345544 467777777777754 3456555345
Q ss_pred cEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC--------ceee-ecCCCCCeecEEEEceEEecC
Q 038762 180 NTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD--------DAIC-PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 180 nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD--------D~i~-i~s~~~~~~nv~v~n~~~~~~ 244 (268)
...+++|.|.. ..|-|- +.-....++|.|..-. ..|. -.........++|.||++...
T Consensus 189 r~yf~~c~I~G-----tvDFIF--G~a~a~f~~c~i~~~~~~~~~~~~g~ITA~~~~~~~~~G~vf~~c~i~~~ 255 (364)
T 3uw0_A 189 RSYFSDCEISG-----HVDFIF--GSGITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKE 255 (364)
T ss_dssp EEEEESCEEEE-----SEEEEE--ESSEEEEESCEEEECCCSSCSSCCEEEEEECCCTTCSCCEEEESCEEEEC
T ss_pred CEEEEcCEEEc-----CCCEEC--CcceEEEEeeEEEEeccCcccCCccEEEeCCcCCCCCcEEEEEeeEEecC
Confidence 66777777775 333222 2235778888886521 1121 111112345699999999864
|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=76.55 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEe-ccccEEEEeEEEeCC------CCcEEEEeeeecEEEEeEEEEcCCCCCCCceee---ecCcccEEEEeeEEecCC
Q 038762 150 VGFL-GCRNVNVWNVRLREP------AYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGID---IEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 150 i~~~-~~~nv~I~~v~i~n~------~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~---~~~~~~v~I~n~~i~~gD 219 (268)
|.+. .++||.|+|++|++. ...+|.+..+++|.|++|++.. ..|+.. ..++.+|+|++|.|...+
T Consensus 126 l~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~-----~~d~~~~~g~~~s~~VTISnn~f~~~~ 200 (359)
T 1idk_A 126 LRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTAR-----IGRQHYVLGTSADNRVSLTNNYIDGVS 200 (359)
T ss_dssp EEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEE-----ESSCSEEECCCTTCEEEEESCEEECBC
T ss_pred EEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeec-----CCCCcEEecccCcceEEEECcEecCCc
Confidence 4444 556666666666541 1235566666666666666653 233332 234556666666665321
Q ss_pred c-----------eeee-cCC--------------C-----CCeecEEEEceEEec-CCccEEeeeeeeeeEEeEEEEee
Q 038762 220 D-----------AICP-KTY--------------T-----GPLYNLTATDSWIRT-KSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 220 D-----------~i~i-~s~--------------~-----~~~~nv~v~n~~~~~-~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+ ...+ ++. . +....++|.||++.+ ..+++..+......+|+.+|++.
T Consensus 201 ~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~ 279 (359)
T 1idk_A 201 DYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNV 279 (359)
T ss_dssp SCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEE
T ss_pred ccccccCccccceEEEEecCCCeEEEceEeecCcccCccccCCceEEEECCEEecccceEEeccCCcEEEEEccEEECC
Confidence 0 0111 110 0 122357777777764 23456555556667777777765
|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-06 Score=73.30 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=61.5
Q ss_pred EEEe-ccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCceee---ecCcccEEEEeeEEecCC
Q 038762 150 VGFL-GCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGID---IEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 150 i~~~-~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~---~~~~~~v~I~n~~i~~gD 219 (268)
|.+. .++||.|+|++|++.. ..+|.+..+++|.|++|++.. ..|+.. ..++.+|+|++|.|....
T Consensus 126 l~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~-----~~d~~~~~~~~~s~~vTISnn~f~~~~ 200 (359)
T 1qcx_A 126 LRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTAR-----IGRQHIVLGTSADNRVTISYSLIDGRS 200 (359)
T ss_dssp EEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEE-----ESSCSEEECSSCCEEEEEESCEEECBC
T ss_pred EEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeec-----cCcCceeecccccccEEEECcEecCCc
Confidence 5555 6677777777776521 245666677777777777764 233332 225567777777775321
Q ss_pred -----------ceeee-cCC--------------C-----CCeecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEee
Q 038762 220 -----------DAICP-KTY--------------T-----GPLYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 220 -----------D~i~i-~s~--------------~-----~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~ni 266 (268)
....+ ++. . +....++|.||++.+. .+++..+......+|+.+|++.
T Consensus 201 ~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~a~~~~~~~~i~~e~N~F~~~ 279 (359)
T 1qcx_A 201 DYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDV 279 (359)
T ss_dssp SSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEE
T ss_pred cccccCcccccceeEEecCCCCeehcccEeccCcccCceecCCceEEEEccEEECccCeEEecCCCceEEEEeeEEECC
Confidence 11111 110 0 1123577777777642 3445544455667777777765
|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=75.78 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEec-CceEEEEcC--CeeEEeCCCCCCCCCCCCce-----EEEEEEe
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK-SHVTLNIHE--DATLLGGPRIEDYPEESSRW-----YVVLAEN 101 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~-s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~-----~~i~~~~ 101 (268)
+-..||+||+++++....-+|+|+||+|. +.+.+. .+++|.+++ .++|.+.............+ ..+. ..
T Consensus 17 ~f~TIq~Ai~aap~~~~~~~I~I~~G~Y~-E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~-v~ 94 (342)
T 2nsp_A 17 TFKTIADAIASAPAGSTPFVILIKNGVYN-ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTIT-IS 94 (342)
T ss_dssp CBSSHHHHHHTSCSSSSCEEEEECSEEEE-CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEE-EC
T ss_pred CcchHHHHHHhcccCCCcEEEEEeCCEEE-EEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEE-EE
Confidence 34569999999987111139999999995 455664 579999985 46666543211000000000 1121 24
Q ss_pred eeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEE-EeccccEEEEeEEEeCCCCcEEEEeeeec
Q 038762 102 ATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVG-FLGCRNVNVWNVRLREPAYWCLHIVRCDN 180 (268)
Q Consensus 102 ~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~nv~I~~v~i~n~~~~~i~~~~~~n 180 (268)
.+++++++ -+|..... +.. .+.+. ..+.-........+|. ...++++.+++|.|... +..+..... .
T Consensus 95 a~~f~a~n-lt~~Nt~~-~~~--~~~~~------~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~-QDTLy~~~g-r 162 (342)
T 2nsp_A 95 AKDFSAQS-LTIRNDFD-FPA--NQAKS------DSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGY-QATLYVSGG-R 162 (342)
T ss_dssp SBSCEEEE-EEEEECCC-HHH--HHHSC------TTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECS-TTCEEECSS-E
T ss_pred CCCEEEEe-eEEEcccc-ccc--ccccc------ccCCccccCCceEEEEEeeccCcEEEEeeEEecc-cceEEECCC-C
Confidence 56666666 23332210 000 00000 0000000001122342 25688899999999865 346666543 5
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC----------ceee-ecCCCCCeecEEEEceEEecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD----------DAIC-PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD----------D~i~-i~s~~~~~~nv~v~n~~~~~~ 244 (268)
..+++|.|.. ..|-|- +.-....++|.|..-. ..|. -.........++|.||++.+.
T Consensus 163 ~~~~~c~I~G-----~vDFIF--G~a~a~f~~c~i~~~~~~~~~~~~~~g~ItA~~~~~~~~~G~vf~~c~i~~~ 230 (342)
T 2nsp_A 163 SFFSDCRISG-----TVDFIF--GDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRE 230 (342)
T ss_dssp EEEESCEEEE-----SEEEEE--ESSEEEEESCEEEECCCTTSCTTSCCEEEEEECCBTTCSCCEEEESCEEEES
T ss_pred EEEEcCEEEe-----ceEEEe--CCceEEEecCEEEEecCcccccccCceEEEccCCCCCCCCEEEEEcCEEecC
Confidence 7888999986 444332 2235889999987621 1222 111123455799999999865
|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=67.98 Aligned_cols=118 Identities=14% Similarity=0.266 Sum_probs=73.6
Q ss_pred EEEEeccccEEEEeEEEeCCC---CcEEEEee-eecEEEEeEEEEcCC----CCCCCcee-eec-CcccEEEEeeEEecC
Q 038762 149 LVGFLGCRNVNVWNVRLREPA---YWCLHIVR-CDNTFIRDMSIYGDF----NTPNNDGI-DIE-DSNNTVITRVQIDTG 218 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~---~~~i~~~~-~~nv~i~~~~i~~~~----~~~~~DGi-~~~-~~~~v~I~n~~i~~g 218 (268)
.|.+..++||.|+|++|++.. ..+|.+.. +++|.|++|++.... +....||. ++. ++.+|+|++|.|...
T Consensus 96 gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h 175 (326)
T 3vmv_A 96 GIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENH 175 (326)
T ss_dssp CEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEE
T ss_pred EEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecC
Confidence 467778899999999998753 45788886 899999999997421 11234554 554 567899999998754
Q ss_pred CceeeecCCCC----------------------C---eecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEee
Q 038762 219 DDAICPKTYTG----------------------P---LYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 219 DD~i~i~s~~~----------------------~---~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+-+.-+++... | ...+++.||++.+. .+++..+......+|+..|++.
T Consensus 176 ~k~~LiG~sd~~~~~~~~vT~~~N~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~ 249 (326)
T 3vmv_A 176 WKTMLVGHTDNASLAPDKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNV 249 (326)
T ss_dssp EECEEECSSSCGGGCCEEEEEESCEEEEEEECTTEEESCEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEE
T ss_pred ceEEEECCCCCCcccCccEEEEeeEecCCcCcCCcccCCcEEEEccEEECCCceEEeecCCcEEEEEceEEECC
Confidence 33333333211 0 01355555555532 3455544445556777777765
|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-05 Score=69.76 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEe---------------eEEecCceEEEEcC-CeeEEe
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTA---------------TIRLKSHVTLNIHE-DATLLG 80 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~---------------~l~l~s~~~l~~~~-ga~l~~ 80 (268)
..+.|++||. .. .+.+|+.=.|++... .|.+.|++||.+.+ ++.|.+
T Consensus 40 t~~dL~~al~--~~--~~p~vI~V~GtI~~~~~~~~~s~~~~~~~~~l~v~snkTI~G~G~~~~i~g 102 (361)
T 1pe9_A 40 NISEFTSALS--AG--AEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFIN 102 (361)
T ss_dssp SHHHHHHHHT--TT--TSCEEEEECSEEETTTTCCCCSHHHHHHHSEEECCSSEEEEECTTCCEEES
T ss_pred CHHHHHHHHh--cC--CCcEEEEECCEEecCCccccccccccccceeEEecCCcEEEccCCCeEEec
Confidence 4667888884 11 123455556776432 35556677776652 344443
|
| >1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=74.86 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=56.1
Q ss_pred cEEEEeeeecEEEEeEEEEcCC------------------CCCCCceeeecCcccEEEEeeEEecCCcee-eecCCCCCe
Q 038762 171 WCLHIVRCDNTFIRDMSIYGDF------------------NTPNNDGIDIEDSNNTVITRVQIDTGDDAI-CPKTYTGPL 231 (268)
Q Consensus 171 ~~i~~~~~~nv~i~~~~i~~~~------------------~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i-~i~s~~~~~ 231 (268)
.++.+..++||.|++++|+... .....|||.+.++++|.|++|.|+.+.|++ .++. .+
T Consensus 106 ~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~id~~~---~s 182 (346)
T 1pxz_A 106 PCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL---GS 182 (346)
T ss_dssp CCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEEES---SC
T ss_pred ceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCceEEEEeeEEecCCCCcEeecc---Cc
Confidence 5677777888888888887431 124678888888888888888888855554 5543 47
Q ss_pred ecEEEEceEEecCCccEEeeee
Q 038762 232 YNLTATDSWIRTKSSAIKLGSA 253 (268)
Q Consensus 232 ~nv~v~n~~~~~~~~gi~ig~~ 253 (268)
.+|+|++|.|..-..++-+|+.
T Consensus 183 ~~vTISnn~f~~H~k~~l~G~s 204 (346)
T 1pxz_A 183 TGITISNNHFFNHHKVMLLGHD 204 (346)
T ss_dssp EEEEEESCEEESEEEEEEESCC
T ss_pred ceEEEEeeEEecCCceeEECCC
Confidence 8888888888864445666653
|
| >3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-06 Score=72.06 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=45.3
Q ss_pred cEEEEeeeecEEEEeEEEEcCCC-------CCCCceeeecCcccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEe
Q 038762 171 WCLHIVRCDNTFIRDMSIYGDFN-------TPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIR 242 (268)
Q Consensus 171 ~~i~~~~~~nv~i~~~~i~~~~~-------~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~ 242 (268)
.++.+..++||.|++++|+.... ....|+|.+.++++|.|++|.|+. .|.++.++. .+.+|+|++|.|.
T Consensus 83 ~Gi~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~---~s~~vTISnn~f~ 159 (340)
T 3zsc_A 83 GGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKK---YSNYITVSWNKFV 159 (340)
T ss_dssp EEEEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEESCEEEEEESCEEESCSSCSEEEET---TCEEEEEESCEEE
T ss_pred CceEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEecCCcEEEEeeeeccCCccceEEec---CCceEEEECcEec
Confidence 35555566666666666664311 115666666666667777777666 444455543 3566666666666
Q ss_pred cCCccEEeee
Q 038762 243 TKSSAIKLGS 252 (268)
Q Consensus 243 ~~~~gi~ig~ 252 (268)
....+.-+|+
T Consensus 160 ~h~k~~LiG~ 169 (340)
T 3zsc_A 160 DHDKVSLVGS 169 (340)
T ss_dssp SCSBCCEECC
T ss_pred cCceeeEeCc
Confidence 5444444443
|
| >2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00031 Score=58.90 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=122.8
Q ss_pred ceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCC
Q 038762 12 IHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEES 91 (268)
Q Consensus 12 ~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~ 91 (268)
+++...++|||.++-.+|++++|.+.|...+. |.+|+|+|...-+.+ +...|+..++++|..-.. .
T Consensus 62 arvls~k~fga~~~~~~d~~~~~~~sl~s~~~------v~i~~gvf~ss~i~~-~~c~l~g~g~g~~~~~~~-------~ 127 (542)
T 2x3h_A 62 ARVLTSKPFGAAGDATTDDTEVIAASLNSQKA------VTISDGVFSSSGINS-NYCNLDGRGSGVLSHRSS-------T 127 (542)
T ss_dssp HHBCBSSCTTCCCBSSSCCHHHHHHHHTSSSC------EECCSEEEEECCEEE-SCCEEECTTTEEEEECSS-------S
T ss_pred heeeecccccccCCcccCcHHHHHhhhccccc------Eeccccccccccccc-ccccccccCCceeeeecC-------C
Confidence 45778899999999999999999999998776 999999996544443 467888888888876332 2
Q ss_pred CceEEEE---EEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC
Q 038762 92 SRWYVVL---AENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP 168 (268)
Q Consensus 92 ~~~~~i~---~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~ 168 (268)
..++.|. ....++++|.|. ... +..-.+-+.|....+|+|+|+.|.|.
T Consensus 128 gn~lvfn~p~~g~ls~~ti~~n------k~~-----------------------ds~qg~qvs~~gg~dvsv~~i~fsn~ 178 (542)
T 2x3h_A 128 GNYLVFNNPRTGRLSNITVESN------KAT-----------------------DTTQGQQVSLAGGSDVTVSDVNFSNV 178 (542)
T ss_dssp SCCEEEESCEEEEEEEEEEECC------CSS-----------------------TTCBCCSEEEESCEEEEEEEEEEEEE
T ss_pred CCEEEEeCCCCcceeeEEEecc------cCC-----------------------ccccceEEEecCCCcceEeeeeeeec
Confidence 3334442 235567777662 110 11234458889999999999999886
Q ss_pred CCcEEEEee------eecEEEEeEEEEcCCCC-CCCceeeec-CcccEEEEeeEEec--CCceeeecCCC--CCeecEEE
Q 038762 169 AYWCLHIVR------CDNTFIRDMSIYGDFNT-PNNDGIDIE-DSNNTVITRVQIDT--GDDAICPKTYT--GPLYNLTA 236 (268)
Q Consensus 169 ~~~~i~~~~------~~nv~i~~~~i~~~~~~-~~~DGi~~~-~~~~v~I~n~~i~~--gDD~i~i~s~~--~~~~nv~v 236 (268)
.+-++.+.- -+...|++++-...... ...-|.-+. ++.+-+|+++.-++ .-.++-+|... .-++||.=
T Consensus 179 ~g~gfsliayp~~~~p~g~~i~~irg~y~g~a~nk~agcvl~dss~nslid~via~nypqfgavelk~~a~ynivsnvig 258 (542)
T 2x3h_A 179 KGTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIAKNYPQFGAVELKGTASYNIVSNVIG 258 (542)
T ss_dssp CSBEEEEEEECSSSCCBSCEEEEEEEEECSCCTTCSEEEEEEESCBSCEEEEEEEESCCTTEEEEEETTCBSCEEEEEEE
T ss_pred CCCceeEEEcCCCCCCCceEEeccccceeccccccccceEEeccchhhhhhhhhhhcCCccceEEeecceeeehhhhhhh
Confidence 655554431 24567777777654332 234455443 66788888888777 34556666532 33455555
Q ss_pred Ece
Q 038762 237 TDS 239 (268)
Q Consensus 237 ~n~ 239 (268)
++|
T Consensus 259 ~~c 261 (542)
T 2x3h_A 259 ADC 261 (542)
T ss_dssp ESC
T ss_pred ccc
Confidence 544
|
| >2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.9e-06 Score=70.14 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=78.6
Q ss_pred EEEEeccccEEEEeEEEeCCC--CcEEEEe-eeecEEEEeEEEEcCCCCCCCceeeec-----CcccEEEEeeEEecC--
Q 038762 149 LVGFLGCRNVNVWNVRLREPA--YWCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIE-----DSNNTVITRVQIDTG-- 218 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~--~~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~-----~~~~v~I~n~~i~~g-- 218 (268)
.+.+.-.+|.+|.+- ++. +.++.+. .++||.|+|++|+........|+|.+. .+++|.|++|.|..+
T Consensus 65 ~~~l~v~sn~TI~G~---~a~i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~ 141 (330)
T 2qy1_A 65 TVQIKNKSDVTIKGA---NGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLT 141 (330)
T ss_dssp EEEEESCCSEEEEEC---TTCBBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCC
T ss_pred eeEEEcCCCeEEECC---CcEEeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEcccc
Confidence 345555677777442 222 5689998 899999999999964322368999999 589999999999743
Q ss_pred ----------CceeeecCCCCCeecEEEEceEEecCCccEEeeee--------eeeeEEeEEEEee
Q 038762 219 ----------DDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSA--------SWFDFKALVFDNI 266 (268)
Q Consensus 219 ----------DD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~--------~~~~~~ni~~~ni 266 (268)
|..+.++. .+.+|+|++|.|.....+.-+|+. ...++.+..|+++
T Consensus 142 ~~~~~~~~~~Dg~idi~~---~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~ 204 (330)
T 2qy1_A 142 KCSGAGDASFDGGIDMKK---GVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204 (330)
T ss_dssp CCTTCTTCSSCCSEEEES---SCEEEEEESCEEEEEEECCEESSSTTCGGGGGCEEEEESCEEEEE
T ss_pred ccccCCcceeeccccccc---CcceEEEEcceeccCCeEEEECCCCccccCCCceEEEECcEEcCC
Confidence 33344443 589999999999864445556653 3456666666554
|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.6e-06 Score=71.75 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhCCC
Q 038762 30 DTAAIQSAIDACPP 43 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~ 43 (268)
..+.|++||++++.
T Consensus 25 t~~~L~~al~~~~~ 38 (353)
T 1air_A 25 SMQDIVNIIDAARL 38 (353)
T ss_dssp SHHHHHHHHHHTTB
T ss_pred CHHHHHHHHHhhcc
Confidence 45689999988764
|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-05 Score=69.26 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=19.6
Q ss_pred cEEEEceEEecC-C------ccEEeeeeeeeeEEeEEEEe
Q 038762 233 NLTATDSWIRTK-S------SAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 233 nv~v~n~~~~~~-~------~gi~ig~~~~~~~~ni~~~n 265 (268)
.+++.||++.+. . .++..+......+|+.+|++
T Consensus 293 ~~Hv~NN~~~n~~~~~~~~~ya~g~~~~~~i~~E~N~F~~ 332 (416)
T 1vbl_A 293 QVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSF 332 (416)
T ss_dssp EEEEESCEEEECTTSSSCCCCSEEEETTCEEEEESCEEEE
T ss_pred eEEEEcceEECCCCCcccceeEeccCCCcEEEEECCEEEC
Confidence 377778887642 1 33444444555667777765
|
| >1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-06 Score=73.70 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=66.6
Q ss_pred ceEEEEeccccEEEEeEEEeCC-------------------CCcEEEEeeeecEEEEeEEEEcCCCC------------C
Q 038762 147 PRLVGFLGCRNVNVWNVRLREP-------------------AYWCLHIVRCDNTFIRDMSIYGDFNT------------P 195 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~-------------------~~~~i~~~~~~nv~i~~~~i~~~~~~------------~ 195 (268)
...|.+..++||.|+|++|++. .+.+|.+..+++|.|++|++...... .
T Consensus 147 g~gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~ 226 (416)
T 1vbl_A 147 GGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQ 226 (416)
T ss_dssp SCEEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECC
T ss_pred cCEEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCccee
Confidence 4578888999999999999753 23468888889999999998742110 0
Q ss_pred CCcee-eec-CcccEEEEeeEEecCCceeeecCCCC-----CeecEEEEceEEec
Q 038762 196 NNDGI-DIE-DSNNTVITRVQIDTGDDAICPKTYTG-----PLYNLTATDSWIRT 243 (268)
Q Consensus 196 ~~DGi-~~~-~~~~v~I~n~~i~~gDD~i~i~s~~~-----~~~nv~v~n~~~~~ 243 (268)
..||. ++. ++.+|+|++|.|...+-+.-+++... ...+|++.+|.|.+
T Consensus 227 ~~DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~ 281 (416)
T 1vbl_A 227 QHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKN 281 (416)
T ss_dssp CCCCSEEEESSCEEEEEESCEEEEEEECCEECSCTTCGGGTTCCCEEEESCEEEE
T ss_pred ecccceeeecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCCceEEEEECcEecC
Confidence 24553 454 57789999999887555554554322 22468888888864
|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=71.09 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeE
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEY 57 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y 57 (268)
..+.|++||..+.. ..+ +|++-.|++
T Consensus 37 t~aeL~~al~~~~~-~~p-riI~v~GtI 62 (399)
T 2o04_A 37 NRNQLVSALGKETN-TTP-KIIYIKGTI 62 (399)
T ss_dssp SHHHHHHHHCCTTC-CSC-EEEEECSEE
T ss_pred CHHHHHHHHHhccC-CCC-EEEEEcCEE
Confidence 45778888854333 223 444335554
|
| >1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=70.10 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=75.4
Q ss_pred ccEEEEeE----EEeCCCCcEEEEe-eeecEEEEeEEEEcC--CCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC
Q 038762 156 RNVNVWNV----RLREPAYWCLHIV-RCDNTFIRDMSIYGD--FNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY 227 (268)
Q Consensus 156 ~nv~I~~v----~i~n~~~~~i~~~-~~~nv~i~~~~i~~~--~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~ 227 (268)
+|.+|.+. .|. +.++.+. .++||.|++++|+.. ......|+|.+.++++|.|++|.|.. +|..+..+
T Consensus 108 snkTI~G~G~~~~i~---G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~~~d~~~~~g-- 182 (359)
T 1idk_A 108 SNKSLIGEGSSGAIK---GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLG-- 182 (359)
T ss_dssp SSEEEEECTTTCEEE---SCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEESSCSEEEC--
T ss_pred CCceEEEecCCeEEe---cceEEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeecCCCCcEEec--
Confidence 66777664 333 3468887 899999999999862 22246799999999999999999987 77777652
Q ss_pred CCCeecEEEEceEEecCC-----------cc-EEeeeeeeeeEEeEEEEee
Q 038762 228 TGPLYNLTATDSWIRTKS-----------SA-IKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~~-----------~g-i~ig~~~~~~~~ni~~~ni 266 (268)
...+.+|+|++|.|.+.. ++ +-+|.....++.+..|.|+
T Consensus 183 ~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~ 233 (359)
T 1idk_A 183 TSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHT 233 (359)
T ss_dssp CCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESB
T ss_pred ccCcceEEEECcEecCCcccccccCccccceEEEEecCCCeEEEceEeecC
Confidence 235799999999998432 13 3335444556666665543
|
| >3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=68.96 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=69.4
Q ss_pred CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEec----------CCceeeecCCCCCeecEEEEc
Q 038762 170 YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDT----------GDDAICPKTYTGPLYNLTATD 238 (268)
Q Consensus 170 ~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~----------gDD~i~i~s~~~~~~nv~v~n 238 (268)
+.++.+..++||.|+|++|+... ....|+|.+.+ +++|.|++|.|.. .|..+.++. .+.+|+|.+
T Consensus 94 G~gl~i~~a~NVIIrNl~i~~~~-~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~---~s~~VTISn 169 (326)
T 3vmv_A 94 GIGIRLSNAHNIIIQNVSIHHVR-EGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKR---NAEYITVSW 169 (326)
T ss_dssp SCCEEEESEEEEEEESCEEECCC-STTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECT---TCEEEEEES
T ss_pred CcEEEEEecceEEEECeEEEcCC-CCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecC---CCceEEEEc
Confidence 33677778999999999999643 34689999996 8999999999963 255566654 689999999
Q ss_pred eEEecCCccEEeeeee-------eeeEEeEEEEee
Q 038762 239 SWIRTKSSAIKLGSAS-------WFDFKALVFDNI 266 (268)
Q Consensus 239 ~~~~~~~~gi~ig~~~-------~~~~~ni~~~ni 266 (268)
|.|..-..+.-+|+.. ..++.+..|+|+
T Consensus 170 n~f~~h~k~~LiG~sd~~~~~~~~vT~~~N~f~~~ 204 (326)
T 3vmv_A 170 NKFENHWKTMLVGHTDNASLAPDKITYHHNYFNNL 204 (326)
T ss_dssp CEEEEEEECEEECSSSCGGGCCEEEEEESCEEEEE
T ss_pred eEEecCceEEEECCCCCCcccCccEEEEeeEecCC
Confidence 9999744456666532 345555555554
|
| >1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=67.52 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=65.3
Q ss_pred EEEEe-eeecEEEEeEEEEcCCC--CCCCceeeecCcccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecC---
Q 038762 172 CLHIV-RCDNTFIRDMSIYGDFN--TPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTK--- 244 (268)
Q Consensus 172 ~i~~~-~~~nv~i~~~~i~~~~~--~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~--- 244 (268)
++.+. .++||.|++++|+.... ....|+|.+.++++|.|++|.|.. +|..+... ...+.+|+|++|.|.+.
T Consensus 125 gl~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~~~d~~~~~~--~~~s~~vTISnn~f~~~~~~ 202 (359)
T 1qcx_A 125 GLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLG--TSADNRVTISYSLIDGRSDY 202 (359)
T ss_dssp CEEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEESSCSEEEC--SSCCEEEEEESCEEECBCSS
T ss_pred eEEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeeccCcCceeec--ccccccEEEECcEecCCccc
Confidence 57777 88999999999986322 245799999999999999999987 66665321 23579999999999843
Q ss_pred -------C-cc-EEeeeeeeeeEEeEEEEe
Q 038762 245 -------S-SA-IKLGSASWFDFKALVFDN 265 (268)
Q Consensus 245 -------~-~g-i~ig~~~~~~~~ni~~~n 265 (268)
+ ++ +-+|+....++.+..|.+
T Consensus 203 s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~ 232 (359)
T 1qcx_A 203 SATCNGHHYWGVYLDGSNDMVTLKGNYFYN 232 (359)
T ss_dssp BTTSSSBBSCCEEECCSSEEEEEESCEEES
T ss_pred cccCcccccceeEEecCCCCeehcccEecc
Confidence 1 23 334544445555555544
|
| >2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00029 Score=62.38 Aligned_cols=113 Identities=7% Similarity=-0.025 Sum_probs=66.2
Q ss_pred eEEEEeccccEEEEeEEEeCCC----------------Cc-EEEEe-eeecEEEEeEEEEcCCCC---CCCceeeec-Cc
Q 038762 148 RLVGFLGCRNVNVWNVRLREPA----------------YW-CLHIV-RCDNTFIRDMSIYGDFNT---PNNDGIDIE-DS 205 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~----------------~~-~i~~~-~~~nv~i~~~~i~~~~~~---~~~DGi~~~-~~ 205 (268)
-+|.+..++||.|++|+|..+. .. .+.+. .+++|||+++.|...... ...|.-... +.
T Consensus 184 DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~ 263 (399)
T 2o04_A 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGK 263 (399)
T ss_dssp CSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTTC
T ss_pred CeEEecCCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccCc
Confidence 4688899999999999998642 11 23444 689999999999752110 011110011 11
Q ss_pred ccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecCC--------ccEEeeeeeeeeEEeEEEEe
Q 038762 206 NNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTKS--------SAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 206 ~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~~--------~gi~ig~~~~~~~~ni~~~n 265 (268)
.+|++.++.|.+ ..-.=.+.- -.++|.||++.+.. .++..+......+|+..|++
T Consensus 264 ~~vT~h~N~f~~~~~R~Pr~R~-----G~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~ 327 (399)
T 2o04_A 264 LKITLHHNRYKNIVQAAPRVRF-----GQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDV 327 (399)
T ss_dssp CCEEEESCEEEEEEECTTEESS-----CEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEEC
T ss_pred eeEEEECcEecCCcccCCCccc-----ceEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEEC
Confidence 278888888854 111111221 14788888886432 23444444555667777765
|
| >1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.3e-05 Score=64.82 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred EEEEeccccEEEEeEEEeCCC-----CcEEEEeeeecEEEEeEEEEcCCCC--------CCCcee-eec-CcccEEEEee
Q 038762 149 LVGFLGCRNVNVWNVRLREPA-----YWCLHIVRCDNTFIRDMSIYGDFNT--------PNNDGI-DIE-DSNNTVITRV 213 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~-----~~~i~~~~~~nv~i~~~~i~~~~~~--------~~~DGi-~~~-~~~~v~I~n~ 213 (268)
+|.+..++||.|+|++|+..+ ..+|.+..+++|.|++|.+...... ...||. ++. ++.+|+|++|
T Consensus 104 gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn 183 (353)
T 1air_A 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYN 183 (353)
T ss_dssp EEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESC
T ss_pred eEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEee
Confidence 688889999999999999653 3579999999999999999853211 113554 553 6789999999
Q ss_pred EEecCCceeeecCCCCC-eecEEEEceEEe
Q 038762 214 QIDTGDDAICPKTYTGP-LYNLTATDSWIR 242 (268)
Q Consensus 214 ~i~~gDD~i~i~s~~~~-~~nv~v~n~~~~ 242 (268)
.|...+-+.-+++.... ..+|++.+|.|.
T Consensus 184 ~f~~h~k~~LiG~sd~~~g~~vT~hhN~f~ 213 (353)
T 1air_A 184 YIHGVKKVGLDGSSSSDTGRNITYHHNYYN 213 (353)
T ss_dssp EEEEEEECCEESSSTTCCCCEEEEESCEEE
T ss_pred EEcCCCceeEECCCcCCCCceEEEEceEEc
Confidence 99864433333332110 134555555553
|
| >1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-05 Score=68.74 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=65.5
Q ss_pred ceEEEE---eccccEEEEeEEEeCCC---------------CcEEEEee-eecEEEEeEEEEcCCCC------------C
Q 038762 147 PRLVGF---LGCRNVNVWNVRLREPA---------------YWCLHIVR-CDNTFIRDMSIYGDFNT------------P 195 (268)
Q Consensus 147 ~~~i~~---~~~~nv~I~~v~i~n~~---------------~~~i~~~~-~~nv~i~~~~i~~~~~~------------~ 195 (268)
...|.+ .+++||.|+|++|++.. ..+|.+.. +++|.|++|++...... -
T Consensus 102 g~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~ 181 (361)
T 1pe9_A 102 NGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYV 181 (361)
T ss_dssp SSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECC
T ss_pred cCEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCccee
Confidence 457888 78999999999998531 34788888 88888888888752110 0
Q ss_pred CCce-eeec-CcccEEEEeeEEecCCceeeecCCCC------CeecEEEEceEEec
Q 038762 196 NNDG-IDIE-DSNNTVITRVQIDTGDDAICPKTYTG------PLYNLTATDSWIRT 243 (268)
Q Consensus 196 ~~DG-i~~~-~~~~v~I~n~~i~~gDD~i~i~s~~~------~~~nv~v~n~~~~~ 243 (268)
..|| +++. ++.+|+|++|.|...+-+.-+++... ...+|++.+|.|.+
T Consensus 182 ~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~ 237 (361)
T 1pe9_A 182 QHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNR 237 (361)
T ss_dssp CCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEE
T ss_pred eccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcC
Confidence 1455 4554 56788888888876554444554332 12368888888864
|
| >2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=72.25 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=70.0
Q ss_pred EEEE---eccccEEEEeEE----EeCCC-CcEEEEeeeecEEEEeEEEEcCCCCCCCceeee-cCcc--cEEEEeeEEec
Q 038762 149 LVGF---LGCRNVNVWNVR----LREPA-YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDI-EDSN--NTVITRVQIDT 217 (268)
Q Consensus 149 ~i~~---~~~~nv~I~~v~----i~n~~-~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~-~~~~--~v~I~n~~i~~ 217 (268)
.+++ ..|+||+|+|++ +.+++ ..|+ |+|+||.|.. ..|.|.+ .+.+ ++.++ .+..
T Consensus 200 ~I~iG~~~~c~NVtI~nvtfi~aI~sspNTDGI-------V~I~nc~I~t-----GDDCIAI~KSGs~~ni~~e--~~~~ 265 (600)
T 2x6w_A 200 AITLGWNGYGSNCYVRKCRFINLVNSSVNADHS-------TVYVNCPYSG-----VESCYFSMSSSFARNIACS--VQLH 265 (600)
T ss_dssp SEEECBTTBEEEEEEESCEEECCCCCSSCCCEE-------EEEECSSSEE-----EESCEEECCCTTHHHHEEE--EEEC
T ss_pred EEEeCCCCCcccEEEeCeEEcceEecCCCCCEE-------EEEEeeEEec-----CCcEEEEecCCCcCCeEEE--EEcC
Confidence 5888 899999999999 66533 2355 8888888875 5666666 4322 34444 2333
Q ss_pred CCceeeecC--------------------CCCCeecEEEEceEEecCCccEEeee----eeeeeEEeEEEEeeE
Q 038762 218 GDDAICPKT--------------------YTGPLYNLTATDSWIRTKSSAIKLGS----ASWFDFKALVFDNIT 267 (268)
Q Consensus 218 gDD~i~i~s--------------------~~~~~~nv~v~n~~~~~~~~gi~ig~----~~~~~~~ni~~~ni~ 267 (268)
+.-+|+++| ..+.++||+|+|+++.+...+|.++. .....|+||+|+||+
T Consensus 266 GHgGISIGSe~~ggV~NV~V~NrIKt~~G~GG~V~NItfeNI~m~nV~~~I~i~q~~~~~s~~~IsnItfkNIt 339 (600)
T 2x6w_A 266 QHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNI 339 (600)
T ss_dssp SSSEEEESCEEEEESEEEEEEECGGGCTTTCSEEEEEEEESCEEEESSEEEEEEECBCSSCBCEEEEEEEESCE
T ss_pred CCCcEEecccccCcEEEEEEEEEEEeecCCCceEEEEEEEEEEEEccceEEEeCCCCCCCCCceEEEEEEEeEE
Confidence 444555554 12458888888888887776776644 234578888888876
|
| >2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00042 Score=60.84 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=67.2
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEee-eecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEe-cCCceeee
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVR-CDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQID-TGDDAICP 224 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~-~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~-~gDD~i~i 224 (268)
..++.+.++++.+|++.+|... +-+|.+.. ++...|++..+... ..++||+++.+.+.+|+++.+. .+.|+|.+
T Consensus 184 ~fGI~l~~a~~~~I~~N~I~e~-GNgI~L~G~~~~~~I~~N~i~~~---~dG~gIyl~ns~~~~I~~N~i~~~~R~gIh~ 259 (410)
T 2inu_A 184 EHALIVRGADALRVNDNMIAEC-GNCVELTGAGQATIVSGNHMGAG---PDGVTLLAENHEGLLVTGNNLFPRGRSLIEF 259 (410)
T ss_dssp SEEEEETTEESCEEESCEEESS-SEEEEECSCEESCEEESCEEECC---TTSEEEEEESEESCEEESCEECSCSSEEEEE
T ss_pred cEEEEEccCCCcEEECCEEEec-CCceeeccccccceEecceeeec---CCCCEEEEEeCCCCEEECCCcccCcceEEEE
Confidence 3478888888889988888854 44888888 88888888888762 3445588888888888888764 48888887
Q ss_pred cCCCCCeecEEEEceEEecCCccE
Q 038762 225 KTYTGPLYNLTATDSWIRTKSSAI 248 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~~~gi 248 (268)
.. +.+..|++|.|+....|+
T Consensus 260 m~----s~~~~i~~N~f~~~~~Gi 279 (410)
T 2inu_A 260 TG----CNRCSVTSNRLQGFYPGM 279 (410)
T ss_dssp ES----CBSCEEESCEEEESSSCS
T ss_pred Ec----cCCCEEECCEEecceeEE
Confidence 55 455555555555444443
|
| >1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=65.17 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=73.2
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-cEEEEeeEEec-CC-------
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-NTVITRVQIDT-GD------- 219 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-~v~I~n~~i~~-gD------- 219 (268)
.|.+ ..+.++|++++|.++..-+|.+.. .+.+|++|+++. ....||.+.... +.+|++|.+.. .|
T Consensus 109 ~i~i-~~~~~~i~gl~I~n~g~~GI~v~g-s~~~i~n~~i~~----n~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~ 182 (400)
T 1ru4_A 109 GFYV-TGDYWYFKGVEVTRAGYQGAYVIG-SHNTFENTAFHH----NRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSM 182 (400)
T ss_dssp SEEE-CSSCEEEESEEEESCSSCSEEECS-SSCEEESCEEES----CSSCSEEECTTCCSCEEESCEEECCCCTTTTTSS
T ss_pred EEEE-ECCeEEEEeEEEEeCCCCcEEEeC-CCcEEEeEEEEC----CCceeEEEEcccCCeEEEceEEEcccCccccCcc
Confidence 4555 689999999999988776898887 788999999997 234499998644 89999999976 32
Q ss_pred -ceeeecCCCCCeecEEEEceEEecC-CccEEe
Q 038762 220 -DAICPKTYTGPLYNLTATDSWIRTK-SSAIKL 250 (268)
Q Consensus 220 -D~i~i~s~~~~~~nv~v~n~~~~~~-~~gi~i 250 (268)
|+++++... .++.+|++|+++.+ ..|+.+
T Consensus 183 ~dG~~~~~~~--g~Gn~~~~~~~~~N~ddGidl 213 (400)
T 1ru4_A 183 ADGFGPKQKQ--GPGNRFVGCRAWENSDDGFDL 213 (400)
T ss_dssp CCSEEECTTC--CSCCEEESCEEESCSSCSEEC
T ss_pred cceEEEEecc--cCCeEEECCEEeecCCCcEEE
Confidence 678877643 38889999999854 456655
|
| >3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0046 Score=54.65 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhCCC--CCCCcEEEECCCeEEEeeEEe---cCceEEEEc
Q 038762 30 DTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRL---KSHVTLNIH 73 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~--~~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~ 73 (268)
+-.-||+||+++++ ....-+|+|.||+|. +.+.+ +.+++|+++
T Consensus 88 ~f~TIqeAVdaap~~~~~~r~vI~Ik~GvY~-E~V~Ip~~K~~ItL~G~ 135 (422)
T 3grh_A 88 THTTIQAAVDAAIIKRTNKRQYIAVMPGEYQ-GTVYVPAAPGGITLYGT 135 (422)
T ss_dssp CBSSHHHHHHHHHTTCCSSCEEEEECSEEEE-SCEEECCCSSCEEEEEC
T ss_pred CcCCHHHHHHhchhcCCCccEEEEEeCCeEe-eeEEecCCCCcEEEEec
Confidence 45679999998743 022358999999996 34666 367888776
|
| >1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=53.94 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=71.3
Q ss_pred EEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc-------ee
Q 038762 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD-------AI 222 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD-------~i 222 (268)
+....+.+.+|++-++.++.+ ++.+..+.+.+|++..+.........-||.+.++.+ +|+|+.|...+. +|
T Consensus 246 im~skS~~n~i~~N~~~~~~g-gi~l~~~~~s~I~~N~f~gN~~~~~~~Gi~i~~~~~-~I~nN~f~~~~g~~~~~~~GI 323 (506)
T 1dbg_A 246 IITSKSQENVYYGNTYLNCQG-TMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRH-VIACNYFELSETIKSRGNAAL 323 (506)
T ss_dssp EEEEESBSCEEESCEEESCSS-EEEEEECSSCEEESCEEEECSSSSCBCCEEECSBSC-EEESCEEEESSBCGGGTSEEE
T ss_pred EEEEecCCEEEECCEEEcccC-cEEEeecCccEEECCEEECCcCccCceEEEEECCCC-EEECCEEECCcCccccccccE
Confidence 444455566777777777755 788888888888888887632111146888877655 999999887443 78
Q ss_pred eecCCC-----CCeecEEEEceEEecCCc-cEEee
Q 038762 223 CPKTYT-----GPLYNLTATDSWIRTKSS-AIKLG 251 (268)
Q Consensus 223 ~i~s~~-----~~~~nv~v~n~~~~~~~~-gi~ig 251 (268)
.+..+. ..++++.|++|+|.++.. ||.++
T Consensus 324 ~i~~G~~~~~~~~~~~~~I~~Ntfi~n~~~gI~~~ 358 (506)
T 1dbg_A 324 YLNPGAMASEHALAFDMLIANNAFINVNGYAIHFN 358 (506)
T ss_dssp EECCBCTTSTTCCCBSEEEESCEEESCSSEEEESS
T ss_pred EEecCCCccccccccCcEEECCEEECCccccEEEc
Confidence 876432 346899999999998876 89888
|
| >3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.034 Score=43.37 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=70.2
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee-eec
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI-CPK 225 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i-~i~ 225 (268)
.+.|.++ +..+|+|+.|-....-||+.. -+.+++|+.... -..|.+.+.++..+.|.+.-..+.+|=| ...
T Consensus 45 ~~vF~le--~GaTLkNvIIG~~~~dGIHC~--G~ctl~NVwwed----VcEDA~T~kg~g~~~I~GGgA~~A~DKV~Q~N 116 (196)
T 3t9g_A 45 KPIFKLE--KGANLKNVIIGAPGCDGIHCY--GDNVVENVVWED----VGEDALTVKSEGVVEVIGGSAKEAADKVFQLN 116 (196)
T ss_dssp CCSEEEC--TTCEEEEEEECSCCTTCEEEC--SSEEEEEEEESS----CCSCSEEECSSEEEEEESCEEEEEEEEEEEEC
T ss_pred CceEEEc--CCCEEEEEEECCCCcCcEEEc--CCEeEEEEEeee----eeceeeEEcCCCeEEEECCCccCCCceEEEEC
Confidence 4456666 677899999976666788875 368888888876 5778888776556677766665533332 111
Q ss_pred C-------------------CCC---CeecEEEEceEEecCCcc-EEeee-eeeeeEEeEEEEee
Q 038762 226 T-------------------YTG---PLYNLTATDSWIRTKSSA-IKLGS-ASWFDFKALVFDNI 266 (268)
Q Consensus 226 s-------------------~~~---~~~nv~v~n~~~~~~~~g-i~ig~-~~~~~~~ni~~~ni 266 (268)
. +|+ .-++|.++|+++.+..-. ++.-| .+...+.|+.+.|+
T Consensus 117 g~Gtv~I~nF~~~~~GKl~RSCGnc~~~r~v~i~~v~~~n~k~~l~rtdS~~~~~~~~n~~~~~~ 181 (196)
T 3t9g_A 117 APCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLNVNNC 181 (196)
T ss_dssp SSEEEEEEEEEEEEEEEEEEECTTCCSCEEEEEEEEEEEEEEEEEEECCCTTCEEEEEEEEEEEE
T ss_pred CCceEEEeeEEEccCCEEEEcCCCCCceeEEEEeCeEEeCCEEEEEEcCCCCCEEEEecceecCC
Confidence 1 123 334888888887653222 23333 24556777777765
|
| >1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.061 Score=46.73 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEEEe---------------eEEecCceEEEEcC-CeeEEeCCCCCCCCCCCC
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTA---------------TIRLKSHVTLNIHE-DATLLGGPRIEDYPEESS 92 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~---------------~l~l~s~~~l~~~~-ga~l~~~~~~~~~~~~~~ 92 (268)
...+.|++||.+.. .+.+|+.-.|++... .|.+.|++||.+.+ +++|.+.
T Consensus 31 tt~~~L~~al~~~~---~~p~VI~V~GtI~~~~~~~~~s~~~~~~~~~l~v~sn~TI~G~G~~~~i~g~----------- 96 (355)
T 1pcl_A 31 KNISDFKKALNGTD---SSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNG----------- 96 (355)
T ss_pred CCHHHHHHHHhhCC---CCcEEEEECCEEecCCccccccccccccceeEEeCCCeEEEEecCCeEEecC-----------
Confidence 35677999996422 244677888988543 46667999999863 4666642
Q ss_pred ceEEEEEEeeeccEEEeccEEecCC--cccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC-
Q 038762 93 RWYVVLAENATDVGITGGGVVDGQA--MKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA- 169 (268)
Q Consensus 93 ~~~~i~~~~~~nv~I~G~G~i~g~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~- 169 (268)
.|.+.+++||.|++- .|.... .+-|... .+ |. ...-+|.+..++||.|++|+|..+.
T Consensus 97 ---gl~i~~~~NVIIrnl-~i~~~~~~~p~~~~~---~g----~~---------~~~DaI~i~~s~nVWIDH~s~s~~~~ 156 (355)
T 1pcl_A 97 ---SLVIKGVKNVILRNL-YIETPVDVAPHYESG---DG----WN---------AEWDAAVIDNSTNVWVDHVTISDGSF 156 (355)
T ss_pred ---EEEEecCCeEEEeee-EEEcCcccccccccc---cC----cc---------ccCceEEecCCCcEEEEeeEEecccc
Confidence 233457888888883 333211 1111100 00 10 1234788899999999999998642
Q ss_pred ---------------Cc-EEEEe-eeecEEEEeEEEEcCCCC---CCCceee-ec-CcccEEEEeeEEec-CCceeeecC
Q 038762 170 ---------------YW-CLHIV-RCDNTFIRDMSIYGDFNT---PNNDGID-IE-DSNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 170 ---------------~~-~i~~~-~~~nv~i~~~~i~~~~~~---~~~DGi~-~~-~~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
.. .+.+. .+++|||+++.|...... ...|.-. .. +..+|++.++.|.+ ..-.=.+.-
T Consensus 157 ~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~ 236 (355)
T 1pcl_A 157 TDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF 236 (355)
T ss_pred CccccccccCccccccccceeeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec
Confidence 11 23344 689999999999863210 0111100 01 12368888888864 211111111
Q ss_pred CCCCeecEEEEceEEecC-Ccc-----EEe--eeeeeeeEEeEEEEe
Q 038762 227 YTGPLYNLTATDSWIRTK-SSA-----IKL--GSASWFDFKALVFDN 265 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~-~~g-----i~i--g~~~~~~~~ni~~~n 265 (268)
..+++.||++.+. .++ ..+ +......+|+.+|++
T Consensus 237 -----G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~ 278 (355)
T 1pcl_A 237 -----GSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTL 278 (355)
T ss_pred -----ceEEEEcceEEcccCCCccccceEecCCCCcEEEEEccEEEC
Confidence 1377888888532 222 223 233445666766664
|
| >2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.011 Score=52.33 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=52.5
Q ss_pred eEEEEeccccEEEE-eEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCC-CCceeee------cCcccEEEEeeEEecCC
Q 038762 148 RLVGFLGCRNVNVW-NVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP-NNDGIDI------EDSNNTVITRVQIDTGD 219 (268)
Q Consensus 148 ~~i~~~~~~nv~I~-~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~-~~DGi~~------~~~~~v~I~n~~i~~gD 219 (268)
+.+++..|++++++ ++.+. .+|+||.|.+|.|...++.- -.-|.-. ..++++. .
T Consensus 196 WTIhPi~Cqnvt~r~gL~f~---------eSCrNV~IsnC~FsVGDdciaiksGk~~~~~~~~~~se~~~---------h 257 (514)
T 2vbk_A 196 WHSKFIACQAGTCRVGLHFL---------GQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVR---------S 257 (514)
T ss_dssp EEEEEESCEEEEEEEEEEEE---------SCCEEEEEESCEEECTTSCCTTCEEEEEECBCCTTTSSCBC---------C
T ss_pred EEEeEeccCceecccCcccc---------CCCCeEEEeccEEecCcceeeeecCceecccccCCcchhcc---------c
Confidence 35889999999987 66664 38999999999999743311 1112211 1244444 4
Q ss_pred ceeeecCC--CCCeec-EEEEceEEecC
Q 038762 220 DAICPKTY--TGPLYN-LTATDSWIRTK 244 (268)
Q Consensus 220 D~i~i~s~--~~~~~n-v~v~n~~~~~~ 244 (268)
.+|.++|+ ++++.| |+|++|-|..+
T Consensus 258 gav~igSE~m~~Gvk~~v~v~~Clf~~t 285 (514)
T 2vbk_A 258 EAIILDSETMCIGFKNAVYVHDCLDLHM 285 (514)
T ss_dssp EEEEEESSEEEESCSEEEEESCCEEEEE
T ss_pred ccEEECchhhcccccccEEEEeeeccCC
Confidence 56777776 467778 88888888754
|
| >1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.81 Score=35.76 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=65.3
Q ss_pred CceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee---
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI--- 222 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i--- 222 (268)
..+.|.++ +..+|+|+.|-.....||+... +.+++|+.... -..|.+.+.+...+.|.+.-..+.+|=|
T Consensus 40 q~~vF~le--~GaTLkNvIIG~~~~dGIHC~G--~CtleNVwwed----VcEDA~T~k~~g~~~I~GGgA~~A~DKV~Q~ 111 (197)
T 1ee6_A 40 QKPIFRLE--AGASLKNVVIGAPAADGVHCYG--DCTITNVIWED----VGEDALTLKSSGTVNISGGAAYKAYDKVFQI 111 (197)
T ss_dssp CCCSEEEC--TTEEEEEEEECSSCTTCEEEES--CEEEEEEEESS----CCSCSEEEEESEEEEEESCEEEEEEEEEEEE
T ss_pred CCcEEEec--CCCEEEEEEEcCCCcccEEEcC--ceeEEEEEeee----ccccccEEcCCCeEEEECCCccCCCccEEEe
Confidence 34456665 6788899988766667888764 58888888876 5677777765445566655555433322
Q ss_pred ------eecC-----------CCCC---eecEEEEceEEecCCccEEe-e-eeeeeeEEeEEEEe
Q 038762 223 ------CPKT-----------YTGP---LYNLTATDSWIRTKSSAIKL-G-SASWFDFKALVFDN 265 (268)
Q Consensus 223 ------~i~s-----------~~~~---~~nv~v~n~~~~~~~~gi~i-g-~~~~~~~~ni~~~n 265 (268)
.++. +|+. -++|.|+|+++.+....+.. - .....++.|+.+.+
T Consensus 112 Ng~Gtv~I~nF~~~~~GKl~RScGnc~~~r~v~i~~v~~~~~k~~i~~~ds~gdtati~n~~~~~ 176 (197)
T 1ee6_A 112 NAAGTINIRNFRADDIGKLVRQNGGTTYKVVMNVENCNISRVKDAILRTDSSTSTGRIVNTRYSN 176 (197)
T ss_dssp CSSEEEEEESCEEEEEEEEEEECTTCCSCEEEEEESCEEEEEEEEEEECCCTTCEEEEESCEEES
T ss_pred cCCceEEEeeEEEccCCEEEEcCCCCccceEEEEeceEEECceEEEEEecCCCCEEEEEecccCC
Confidence 1111 1232 35888888888753222221 1 12344556655544
|
| >1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.15 Score=43.48 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=62.8
Q ss_pred EEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee
Q 038762 149 LVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i 222 (268)
.+.+ .++++.++|++|+|+. ..++.+ .++...+++|++.. ..|++.....+. .+++|.|+..-|-|
T Consensus 84 tv~v-~a~~f~~~~lt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r~-~~~~c~I~G~vDFI 155 (317)
T 1xg2_A 84 TLAA-VGQGFILQDICIQNTAGPAKDQAVALRV-GADMSVINRCRIDA-----YQDTLYAHSQRQ-FYRDSYVTGTVDFI 155 (317)
T ss_dssp SEEE-CSTTCEEESCEEEECCCGGGCCCCSEEE-CCTTEEEESCEEEC-----STTCEEECSSEE-EEESCEEEESSSCE
T ss_pred EEEE-ECCCEEEEEeEEecccCCccCceEEEEE-eCCcEEEEEeEeCc-----cccceeecCccE-EEEeeEEEeceeEE
Confidence 4544 6899999999999863 235665 57889999999997 788888876654 88999999877766
Q ss_pred eecCCCCCeecEEEEceEEecC
Q 038762 223 CPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
- +. ....|++|++...
T Consensus 156 f-G~-----~~avf~~c~i~~~ 171 (317)
T 1xg2_A 156 F-GN-----AAVVFQKCQLVAR 171 (317)
T ss_dssp E-EC-----CEEEEESCEEEEC
T ss_pred c-CC-----ceEEEeeeEEEEe
Confidence 3 22 3489999999853
|
| >1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.27 Score=42.00 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=65.0
Q ss_pred EEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee
Q 038762 149 LVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i 222 (268)
.+.+ .++++.++|++|+|+. ..++.+ .+++..|++|++.. ..|++.....+ -.+++|.|+..-|-|
T Consensus 88 tv~v-~a~~f~~~nlt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r-~~~~~c~I~G~vDFI 159 (319)
T 1gq8_A 88 TVAA-VGAGFLARDITFQNTAGAAKHQAVALRV-GSDLSAFYRCDILA-----YQDSLYVHSNR-QFFINCFIAGTVDFI 159 (319)
T ss_dssp SEEE-CSTTCEEEEEEEEECCCGGGCCCCSEEE-CCTTEEEEEEEEEC-----STTCEEECSSE-EEEESCEEEESSSCE
T ss_pred EEEE-ECCCEEEEEeEeEccCCCcCCceEEEEe-cCCcEEEEEeEECc-----cceeeeecCcc-EEEEecEEEeeeeEE
Confidence 4555 4899999999999853 335665 58999999999997 78889888765 499999999877776
Q ss_pred eecCCCCCeecEEEEceEEecC
Q 038762 223 CPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
- +. ....|++|++...
T Consensus 160 f-G~-----~~a~f~~c~i~~~ 175 (319)
T 1gq8_A 160 F-GN-----AAVVLQDCDIHAR 175 (319)
T ss_dssp E-ES-----CEEEEESCEEEEC
T ss_pred e-cC-----CcEEEEeeEEEEe
Confidence 4 32 3489999999853
|
| >1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.53 Score=36.81 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=37.5
Q ss_pred eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecC
Q 038762 177 RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 177 ~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
--++.+++|+.|-. +..||||..+ +-+++|++++. +.|++.+++
T Consensus 46 le~GaTLkNvIIG~----~~~dGIHC~G--~CtleNVwwedVcEDA~T~k~ 90 (197)
T 1ee6_A 46 LEAGASLKNVVIGA----PAADGVHCYG--DCTITNVIWEDVGEDALTLKS 90 (197)
T ss_dssp ECTTEEEEEEEECS----SCTTCEEEES--CEEEEEEEESSCCSCSEEEEE
T ss_pred ecCCCEEEEEEEcC----CCcccEEEcC--ceeEEEEEeeeccccccEEcC
Confidence 33578999999975 5899999865 58999999998 999999985
|
| >3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} | Back alignment and structure |
|---|
Probab=91.46 E-value=1.8 Score=33.67 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=45.6
Q ss_pred EEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCC--CCCCceeeecCcccEEEEeeEEecCCcee-eecC
Q 038762 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN--TPNNDGIDIEDSNNTVITRVQIDTGDDAI-CPKT 226 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~--~~~~DGi~~~~~~~v~I~n~~i~~gDD~i-~i~s 226 (268)
+.+.....+.|.+--.+++.-=-+....+-.+.|+|.....-.. ..++. - ..-++|.|+|+.+.++-.++ ...|
T Consensus 90 ~T~kg~g~~~I~GGgA~~A~DKV~Q~Ng~Gtv~I~nF~~~~~GKl~RSCGn-c--~~~r~v~i~~v~~~n~k~~l~rtdS 166 (196)
T 3t9g_A 90 LTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKNFTATNIGKLVRQNGN-T--TFKVVIYLEDVTLNNVKSCVAKSDS 166 (196)
T ss_dssp EEECSSEEEEEESCEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEECTT-C--CSCEEEEEEEEEEEEEEEEEEECCC
T ss_pred eEEcCCCeEEEECCCccCCCceEEEECCCceEEEeeEEEccCCEEEEcCCC-C--CceeEEEEeCeEEeCCEEEEEEcCC
Confidence 44444445555555555543334555555566677666643100 00110 0 11247899999888754333 3333
Q ss_pred CCCCeecEEEEceEEec
Q 038762 227 YTGPLYNLTATDSWIRT 243 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~ 243 (268)
+...+.+.|....+
T Consensus 167 ---~~~~~~~~n~~~~~ 180 (196)
T 3t9g_A 167 ---PVSELWYHNLNVNN 180 (196)
T ss_dssp ---TTCEEEEEEEEEEE
T ss_pred ---CCCEEEEecceecC
Confidence 55666777666654
|
| >2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A | Back alignment and structure |
|---|
Probab=88.50 E-value=1.9 Score=37.15 Aligned_cols=83 Identities=11% Similarity=0.177 Sum_probs=62.8
Q ss_pred EEEEeccccEEEEeEEEeCCCC--------------------cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCccc
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY--------------------WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNN 207 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~--------------------~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~ 207 (268)
.+.+ .++++.++|++|+|+.. .++.+ ..++++.+++|++.. ..|.+..... +
T Consensus 90 tv~v-~a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G-----~QDTLy~~~g-r 162 (342)
T 2nsp_A 90 TITI-SAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVG-----YQATLYVSGG-R 162 (342)
T ss_dssp SEEE-CSBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEEC-----STTCEEECSS-E
T ss_pred EEEE-ECCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEec-----ccceEEECCC-C
Confidence 3444 48999999999998641 13432 468899999999997 7888888754 6
Q ss_pred EEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 208 TVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 208 v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
..+++|.|+..-|-| ++. ....|++|+|...
T Consensus 163 ~~~~~c~I~G~vDFI-FG~-----a~a~f~~c~i~~~ 193 (342)
T 2nsp_A 163 SFFSDCRISGTVDFI-FGD-----GTALFNNCDLVSR 193 (342)
T ss_dssp EEEESCEEEESEEEE-EES-----SEEEEESCEEEEC
T ss_pred EEEEcCEEEeceEEE-eCC-----ceEEEecCEEEEe
Confidence 888999999876766 233 3589999999853
|
| >3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A | Back alignment and structure |
|---|
Probab=85.90 E-value=15 Score=31.14 Aligned_cols=137 Identities=12% Similarity=0.018 Sum_probs=76.0
Q ss_pred ccEEEeccEEecCCcccccchhhcccceecccccCCCCC-CCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEE
Q 038762 104 DVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSG-DECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTF 182 (268)
Q Consensus 104 nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~ 182 (268)
.-+|.| +++||.+..|-. .|.+ .....+.|.++. ..+|+|+.|-.....||+... -+.+
T Consensus 124 ~~~i~g-~t~Dgg~k~~~~----------------~c~~q~E~q~~vF~le~--GatlkNvIiG~~~~dGIHC~~-G~Ct 183 (344)
T 3b4n_A 124 GATFEN-RTVDCGGVTIGT----------------SCPNDSDKQKPLIILKN--ATVKNLRISASGGADGIHCDS-GNCT 183 (344)
T ss_dssp TEEEES-SEEECTTCEECC----------------CCCTTCSCCCCSEEEES--CEEEEEEECTTCCTTCEEEEE-SEEE
T ss_pred ceeEec-ceEcCCCcEECC----------------CCCCccccCccEEEEcc--CcEEEEEEecCCCccceEEcc-CCee
Confidence 345565 588888777521 1111 112345666764 478999988666667888762 1488
Q ss_pred EEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC-------Cce---------eeec--------------CCCC---
Q 038762 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG-------DDA---------ICPK--------------TYTG--- 229 (268)
Q Consensus 183 i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g-------DD~---------i~i~--------------s~~~--- 229 (268)
|+|+..+. -..|.+.+.+ ..+.|.+.-..+. +|= +.|. -.|+
T Consensus 184 leNVwwed----VcEDA~T~kg-~~~~I~GGgA~~a~~g~~g~~DKV~Q~Ng~gtv~I~~~~F~~~~~~GKl~RSCGnC~ 258 (344)
T 3b4n_A 184 IENVIWED----ICEDAATNNG-KTMTIVGGIAHNAKDGYGGKPDKVLQHNSKNSTTVVKGNFTLTGEHGKLWRSCGDCS 258 (344)
T ss_dssp EEEEEESS----CSSCSEEECS-SEEEEESCEEEECTTCTTSSCCEEEEECCSSEEEEEETTEEEEEEEEEEEEECSSCT
T ss_pred EEEEeehh----cccccceecC-ceEEEECchhccccccccCCCCcEEEeCCCccEEEecCceEEEccCCeEeEccCCcc
Confidence 88888875 4666666653 2344443332222 111 1111 0122
Q ss_pred ---CeecEEEEceEEecCCcc-EEee--eeeeeeEEeEEEEe
Q 038762 230 ---PLYNLTATDSWIRTKSSA-IKLG--SASWFDFKALVFDN 265 (268)
Q Consensus 230 ---~~~nv~v~n~~~~~~~~g-i~ig--~~~~~~~~ni~~~n 265 (268)
.-++|+|+|+++.+...- +.|. .....+|+|+++++
T Consensus 259 ~~~~~R~v~i~nv~~~g~~~~lvGiN~NyGDtati~n~~i~~ 300 (344)
T 3b4n_A 259 NNGGPRFLTVTSATVNGTIDSIAGVNRNYGDVATISGLKIKN 300 (344)
T ss_dssp TCCCCEEEEESSEEEEEEEEEEEEEEGGGTCEEEECSEEETT
T ss_pred cCCcceEEEEeceEEeCCceEEEEEeCCCCCEEEEEEEEEec
Confidence 367899999987542211 2222 24566888888764
|
| >3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=85.66 E-value=3 Score=36.13 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=65.5
Q ss_pred EEEEeccccEEEEeEEEeCCCC--------------------cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCccc
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY--------------------WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNN 207 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~--------------------~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~ 207 (268)
.+.+ .++++.++|++|+|+.. .++.+. .++...+++|++.. ..|.+......+
T Consensus 116 Tv~V-~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G-----~QDTLy~~~~gr 189 (364)
T 3uw0_A 116 TVLV-NAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEG-----YQDTLYSKTGSR 189 (364)
T ss_dssp SEEE-CSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEEC-----SBSCEEECTTCE
T ss_pred EEEE-ECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEe-----cccceEeCCCCC
Confidence 3444 57999999999998742 255555 58999999999997 678898874567
Q ss_pred EEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 208 TVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 208 v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
...++|.|+..-|-|- +. ....|++|++...
T Consensus 190 ~yf~~c~I~GtvDFIF-G~-----a~a~f~~c~i~~~ 220 (364)
T 3uw0_A 190 SYFSDCEISGHVDFIF-GS-----GITVFDNCNIVAR 220 (364)
T ss_dssp EEEESCEEEESEEEEE-ES-----SEEEEESCEEEEC
T ss_pred EEEEcCEEEcCCCEEC-Cc-----ceEEEEeeEEEEe
Confidence 8999999998777763 33 4689999999853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 268 | ||||
| d1bhea_ | 376 | b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor | 2e-37 | |
| d1ogmx2 | 373 | b.80.1.10 (X:202-574) Dextranase, catalytic domain | 2e-31 | |
| d1rmga_ | 422 | b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a | 2e-30 | |
| d1nhca_ | 336 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 4e-24 | |
| d1hg8a_ | 349 | b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo | 8e-23 | |
| d1ia5a_ | 339 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 1e-22 | |
| d1czfa_ | 335 | b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill | 3e-19 | |
| d1k5ca_ | 333 | b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p | 2e-15 | |
| d1o88a_ | 353 | b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, | 7e-04 |
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Score = 133 bits (335), Expect = 2e-37
Identities = 55/253 (21%), Positives = 87/253 (34%), Gaps = 19/253 (7%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGE---YLTATIRLKSHVTLNIHEDATLLGGPRIED 86
T+ IQ A++ C G VR G +L+ + L S V+L I + TL +
Sbjct: 25 ATSTIQKALNNCDQG---KAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKS 81
Query: 87 YPEESSRWYVVLAE-----------NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWN 135
+ S VV + T+ GI G G +DGQ + K + +
Sbjct: 82 FENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADA 141
Query: 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP 195
+ PRL+ +N ++NV L + + D +I
Sbjct: 142 KVK--KLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTAR 199
Query: 196 NNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASW 255
N DGID S N I I TGDD + K Y G + + +
Sbjct: 200 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSET 259
Query: 256 FDFKALVFDNITI 268
+ D++ +
Sbjct: 260 MGVYNVTVDDLKM 272
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Score = 117 bits (294), Expect = 2e-31
Identities = 31/252 (12%), Positives = 63/252 (25%), Gaps = 18/252 (7%)
Query: 20 FGAKGDGIHYDTAAIQSA-IDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATL 78
G +T + I+ G K + FPPG Y + + L L
Sbjct: 3 SGMIPHMTPDNTQTMTPGPINNGDWGAKSI-LYFPPGVYWMNQDQSGNSGKLGS-NHIRL 60
Query: 79 LGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTG 138
+ + + TG G++ G+ + + ++
Sbjct: 61 NSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDN---YIAVKSDS 117
Query: 139 ACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGD-FNTPNN 197
G + + P + + +
Sbjct: 118 TSLR---MWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQT 174
Query: 198 DGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASW-F 256
DG +I N+V+ V DDAI + + + I + +
Sbjct: 175 DGPEI--YPNSVVHDVFWHVNDDAIKIYY-----SGASVSRATIWKCHNDPIIQMGWTSR 227
Query: 257 DFKALVFDNITI 268
D + D + +
Sbjct: 228 DISGVTIDTLNV 239
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Score = 115 bits (289), Expect = 2e-30
Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 33/254 (12%)
Query: 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEY-LTATIRLKSHVTLNIHE 74
+++ +GA D AI SA AC G V P G Y L + L I
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWAACKSGGL---VYIPSGNYALNTWVTLTGGSATAIQL 78
Query: 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSW 134
D + V + T G V G +
Sbjct: 79 DGIIYRTGTASGNM-----IAVTDTTDFELFSSTSKGAVQGFGYVY-------------- 119
Query: 135 NHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNT 194
+ R++ + +V ++ L + + + C + + +M+I G
Sbjct: 120 -----HAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNE- 173
Query: 195 PNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS 254
DGID+ SN + V++ D+ + K+ N+ + +
Sbjct: 174 GGLDGIDVWGSNIW-VHDVEVTNKDECVTVKSPA---NNILVESIYCNWSGGCAMGSLGA 229
Query: 255 WFDFKALVFDNITI 268
D +V+ N+
Sbjct: 230 DTDVTDIVYRNVYT 243
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Score = 96.7 bits (240), Expect = 4e-24
Identities = 38/243 (15%), Positives = 74/243 (30%), Gaps = 31/243 (12%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
+ +I +C + P GE L + T+ + Y E
Sbjct: 7 SASEASESISSCS-DVVLSSIEVPAGETLDLSD-AADGSTITFEGTTSF-------GYKE 57
Query: 90 ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRL 149
++ T V + G V+DG ++ W+ G G + +P+
Sbjct: 58 WKGPLIRFGGKDLT-VTMADGAVIDGDGSRW-------------WDSKGTNGG-KTKPKF 102
Query: 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG----DFNTPNNDGIDIEDS 205
+ + + ++ + + + N + D +I D N DG DI +S
Sbjct: 103 MYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISES 161
Query: 206 NNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDN 265
I+ + DD I + + T S +G K + +
Sbjct: 162 TGVYISGATVKNQDDCIAINSGES--ISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISD 219
Query: 266 ITI 268
T+
Sbjct: 220 STV 222
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Score = 93.7 bits (232), Expect = 8e-23
Identities = 39/257 (15%), Positives = 84/257 (32%), Gaps = 46/257 (17%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
+ + + +A+ +C + P G+ L + L++ T+ T +
Sbjct: 7 EYSGLATAVSSCKNIV-LNGFQVPTGKQLDLS-SLQNDSTVTFKGTTT---------FAT 55
Query: 90 ESSRWYVVLAENATDVGITG--GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRP 147
+ + + + +++ ITG G V+DG + W+ G+ S +P
Sbjct: 56 TADNDFNPIVISGSNITITGASGHVIDGNGQAY-------------WDGKGSNSNSNQKP 102
Query: 148 RL--VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNT----------- 194
V N + N+ ++ C I I + +
Sbjct: 103 DHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPA 162
Query: 195 -PNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIR--TKSSAIKLG 251
N DG DI S++ + + DD + + T N+ ++ + S +G
Sbjct: 163 AHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT----NIVVSNMYCSGGHGLSIGSVG 218
Query: 252 SASWFDFKALVFDNITI 268
S + F + +
Sbjct: 219 GKSDNVVDGVQFLSSQV 235
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Score = 92.8 bits (230), Expect = 1e-22
Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 30/242 (12%)
Query: 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPE 89
++ + +C V P G L T +L + + T Y E
Sbjct: 11 GASSASKSKTSCS-TIVLSNVAVPSGTTLDLT-KLNDGTHVIFSGETTF-------GYKE 61
Query: 90 ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRL 149
S V + T G G ++G ++ W+ G +G + +P+
Sbjct: 62 WSGPLISVSGSDLTITG-ASGHSINGDGSRW-------------WDGEG-GNGGKTKPKF 106
Query: 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIY----GDFNTPNNDGIDIEDS 205
N + +++ + D ++D++I D N D DI S
Sbjct: 107 FAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTS 166
Query: 206 NNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDN 265
I+ + DD + +G + S +G S K + F +
Sbjct: 167 TYVTISGATVYNQDDCVAVN--SGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVD 224
Query: 266 IT 267
T
Sbjct: 225 ST 226
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Score = 83.6 bits (206), Expect = 3e-19
Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 37/251 (14%)
Query: 25 DGIHYDTAAIQSA-IDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPR 83
D + TAA A C + P G L T L S + + T
Sbjct: 1 DSCTFTTAAAAKAGKAKCS-TITLNNIEVPAGTTLDLT-GLTSGTKVIF--EGTTTFQYE 56
Query: 84 IEDYPEESSRWYVVLAENATDVGITG--GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACS 141
P +++ + + +TG G +++ ++ W+ +
Sbjct: 57 EWAGP--------LISMSGEHITVTGASGHLINCDGARW-------------WDGK--GT 93
Query: 142 GDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG----DFNTPNN 197
+ +P+ G + ++ + ++ + + ++ D++I N
Sbjct: 94 SGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQGGHNT 152
Query: 198 DGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWFD 257
D D+ +S I + + DD + +G T S +G S
Sbjct: 153 DAFDVGNSVGVNIIKPWVHNQDDCLAVN--SGENIWFTGGTCIGGHGLSIGSVGDRSNNV 210
Query: 258 FKALVFDNITI 268
K + ++ T+
Sbjct: 211 VKNVTIEHSTV 221
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Score = 72.7 bits (178), Expect = 2e-15
Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 42/246 (17%)
Query: 31 TAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEE 90
+ I C P G L + T+ + D T D P
Sbjct: 5 SVDDAKDIAGCS-AVTLNGFTVPAGNTLV--LNPDKGATVTMAGDITF--AKTTLDGP-- 57
Query: 91 SSRWYVVLAENATDVGITG-GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRL 149
+ + T + G + DG + W+ G + +P
Sbjct: 58 ------LFTIDGTGINFVGADHIFDGNGALY-------------WDGKG-TNNGTHKPHP 97
Query: 150 VGFLGCRNVNVWNVRLREPAYWCLHI------VRCDNTFIRDMSIYGDFNTPNNDGIDIE 203
+ + + + + + D + D + N DG D+
Sbjct: 98 FLKI-KGSGTYKKFEVLNSPAQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS 156
Query: 204 DSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGS-ASWFDFKALV 262
+N T I + DD I N+ ++ I +GS A+ +V
Sbjct: 157 ANNVT-IQNCIVKNQDDCIAINDGN----NIRFENNQCS-GGHGISIGSIATGKHVSNVV 210
Query: 263 FDNITI 268
T+
Sbjct: 211 IKGNTV 216
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Score = 38.2 bits (88), Expect = 7e-04
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 171 WCLHIVRCDNTFIRDMSI-YGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY-- 227
+ + I + + +++M I Y + D I ++DS N + ++ +
Sbjct: 103 FGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDND 162
Query: 228 ---------TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266
G +T + ++I GS+S + + + +
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHHN 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 268 | |||
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 100.0 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 100.0 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 100.0 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 100.0 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 100.0 | |
| d1ia5a_ | 339 | Polygalacturonase {Fungus (Aspergillus aculeatus) | 99.7 | |
| d1hg8a_ | 349 | Polygalacturonase {Fusarium moniliforme [TaxId: 11 | 99.69 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 99.64 | |
| d1h80a_ | 464 | iota-carrageenase {Alteromonas sp., atcc 43554 [Ta | 99.63 | |
| d1nhca_ | 336 | Polygalacturonase {Fungus (Aspergillus niger), end | 99.62 | |
| d1czfa_ | 335 | Polygalacturonase {Fungus (Aspergillus niger), end | 99.61 | |
| d1k5ca_ | 333 | Polygalacturonase {Fungus (Stereum purpureum), end | 99.45 | |
| d1rmga_ | 422 | Rhamnogalacturonase A {Aspergillus aculeatus [TaxI | 99.38 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 99.38 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 98.74 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 98.58 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 98.38 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 98.21 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 98.2 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 98.18 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 97.96 | |
| d1qjva_ | 342 | Pectin methylesterase PemA {Erwinia chrysanthemi [ | 97.96 | |
| d1o88a_ | 353 | Pectate lyase {Erwinia chrysanthemi, type C [TaxId | 97.88 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 97.85 | |
| d1gq8a_ | 319 | Pectin methylesterase PemA {Carrot (Daucus carota) | 97.79 | |
| d1pxza_ | 346 | Major pollen allergen Jun a 1 {Ozark white cedar ( | 97.78 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 97.76 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 97.75 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 97.54 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 97.46 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 97.16 | |
| d1pcla_ | 355 | Pectate lyase {Erwinia chrysanthemi, type E [TaxId | 96.88 | |
| d1ee6a_ | 197 | Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: | 95.67 | |
| d1ee6a_ | 197 | Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: | 88.69 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 83.43 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 83.09 |
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=6.3e-46 Score=328.50 Aligned_cols=233 Identities=24% Similarity=0.340 Sum_probs=195.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCCCcEEEECCCe---EEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCc--------
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKPCQVRFPPGE---YLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSR-------- 93 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~---Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~-------- 93 (268)
++.+|+|+|||+||++|++ |++|+||||+ |+.++|.|+|+++|++++||+|+++.+.++|+.....
T Consensus 20 ~~~~~~T~aIq~AIdac~~---Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~~y~~~~~~~~~~~~~~ 96 (376)
T d1bhea_ 20 ADSSTATSTIQKALNNCDQ---GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNG 96 (376)
T ss_dssp CCSSBCHHHHHHHHTTCCT---TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSGGGBSSTTCSSCEESCS
T ss_pred CCCChhHHHHHHHHHHCCC---CCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcCCHHHcccccceeeeEeccC
Confidence 4568999999999999976 8899999997 8899999999999999999999999998888654211
Q ss_pred ---eEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccC----CCCCCCCCceEEEEeccccEEEEeEEEe
Q 038762 94 ---WYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTG----ACSGDECRPRLVGFLGCRNVNVWNVRLR 166 (268)
Q Consensus 94 ---~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~nv~I~~v~i~ 166 (268)
..++.+.+++||+|+|.|+|||+|..+|...... |.... .......||++|.|.+|+|++|+|++|+
T Consensus 97 ~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~------~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~~iti~ 170 (376)
T d1bhea_ 97 KGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVS------WWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLI 170 (376)
T ss_dssp CCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSC------TTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEE
T ss_pred cccceeEEecCcceEEEEeCcEEecccceeecCCccc------hhccccccccccCCCCCCeEEEEEecccEEEEeeEEe
Confidence 2467789999999999999999997654322111 00000 0011235899999999999999999999
Q ss_pred CCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCC--CCeecEEEEceEEecC
Q 038762 167 EPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT--GPLYNLTATDSWIRTK 244 (268)
Q Consensus 167 n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~--~~~~nv~v~n~~~~~~ 244 (268)
|++.|++.+..|++++|++++|.++..++++|||++.+|++|+|+||.|.++||||++|++. .+++||+|+||+|..
T Consensus 171 ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni~i~n~~~~~- 249 (376)
T d1bhea_ 171 NSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGT- 249 (376)
T ss_dssp CCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEEEEEEEEECS-
T ss_pred cCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecccCCCCcceEEEEeeEEec-
Confidence 99999999999999999999999988889999999999999999999999999999999864 478899999999876
Q ss_pred CccEEeeeeeeeeEEeEEEEeeEC
Q 038762 245 SSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 245 ~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
.+|+++|++.. .++||+|+|++|
T Consensus 250 ~~g~~iGs~~~-~v~nv~i~n~~~ 272 (376)
T d1bhea_ 250 GHGMSIGSETM-GVYNVTVDDLKM 272 (376)
T ss_dssp SSCEEEEEEES-SEEEEEEEEEEE
T ss_pred CCCceeccccC-CEEEEEEEeeeE
Confidence 56888888754 478888888765
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Probab=100.00 E-value=1.5e-42 Score=310.16 Aligned_cols=223 Identities=20% Similarity=0.297 Sum_probs=179.4
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEE-eeEEec--CceEEEEcCCeeEEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLT-ATIRLK--SHVTLNIHEDATLLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~-~~l~l~--s~~~l~~~~ga~l~~~~~~~~ 86 (268)
+..++|||+||||++||++|||+|||+||++|+. +++|+||+|+|++ +++.|+ ++++|+++ ++|++......
T Consensus 16 ~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac~~---gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~--G~i~~~~~~~~ 90 (422)
T d1rmga_ 16 GATKTCNILSYGAVADNSTDVGPAITSAWAACKS---GGLVYIPSGNYALNTWVTLTGGSATAIQLD--GIIYRTGTASG 90 (422)
T ss_dssp HHHCEEEGGGGTCCCSSSSBCHHHHHHHHHHHTB---TCEEEECSSEEEECSCEEEESCEEEEEEEC--SEEEECCCCSS
T ss_pred CCCcEEEEecCCCCCCCCccCHHHHHHHHHhcCC---CCEEEECCCcEEEeCcEEEcCCCceEEEEe--EEEEeccCCcc
Confidence 5678999999999999999999999999999965 8899999999976 468886 46667776 67777544322
Q ss_pred CCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEe
Q 038762 87 YPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLR 166 (268)
Q Consensus 87 ~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~ 166 (268)
+. +........+.+.+.|.|+|||+|..||.. ...+|+++.|.+|+|+.|++++++
T Consensus 91 ~~-----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~-------------------~~~~p~~l~~~~~~n~~i~git~~ 146 (422)
T d1rmga_ 91 NM-----IAVTDTTDFELFSSTSKGAVQGFGYVYHAE-------------------GTYGARILRLTDVTHFSVHDIILV 146 (422)
T ss_dssp EE-----EEEEEEEEEEEECSSSCCEEECCTHHHHTT-------------------TCCCCEEEEEEEEEEEEEEEEEEE
T ss_pred CE-----EEeccCccEEEEEeecceEEecCcceecCC-------------------CCCCCcEEEEEeeeeeEEECcEec
Confidence 21 122234556667778899999999999953 224788999999999999999999
Q ss_pred CCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCc
Q 038762 167 EPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSS 246 (268)
Q Consensus 167 n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~ 246 (268)
|++.|++.+..|++++|+|++|.++ ..+++||||+.+ ++|+|+||++.++||||++++ +++||+|+|+++.. .+
T Consensus 147 nsp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks---~s~nI~i~n~~c~~-g~ 220 (422)
T d1rmga_ 147 DAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKS---PANNILVESIYCNW-SG 220 (422)
T ss_dssp CCSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEE---EEEEEEEEEEEEES-SS
T ss_pred CCCceEEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCC---CCccEEEEeeEEcc-cc
Confidence 9999999999999999999999975 457999999976 489999999999999999998 56777777777765 45
Q ss_pred cEEeeee-eeeeEEeEEEEeeE
Q 038762 247 AIKLGSA-SWFDFKALVFDNIT 267 (268)
Q Consensus 247 gi~ig~~-~~~~~~ni~~~ni~ 267 (268)
|+++|+. ....++||+|+|++
T Consensus 221 GisiGs~g~~~~V~nV~v~n~~ 242 (422)
T d1rmga_ 221 GCAMGSLGADTDVTDIVYRNVY 242 (422)
T ss_dssp EEEEEEECTTEEEEEEEEEEEE
T ss_pred ceeEeeccCCCCEEEEEEEeEE
Confidence 7777663 33456666666654
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Probab=100.00 E-value=2.5e-38 Score=276.47 Aligned_cols=213 Identities=16% Similarity=0.252 Sum_probs=161.8
Q ss_pred chhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEE
Q 038762 28 HYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGI 107 (268)
Q Consensus 28 ~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I 107 (268)
.+|++|||+|+++|.+ .++++|++|+|+|+... .|+++.+|.++ |++.........+ .+.....+|++|
T Consensus 5 i~d~~ai~~ai~~C~~-~~~~~v~vPaG~~l~~~-~l~~~~tl~~~-g~~~~~~~~~~~~--------~~~~~~~~ni~I 73 (349)
T d1hg8a_ 5 VTEYSGLATAVSSCKN-IVLNGFQVPTGKQLDLS-SLQNDSTVTFK-GTTTFATTADNDF--------NPIVISGSNITI 73 (349)
T ss_dssp ESSGGGHHHHHHHCSE-EEECCCEECTTCCEEET-TCCTTCEEEEC-SEEEECCCCCTTC--------CSEEEEEESCEE
T ss_pred cCCHHHHHHHHHHccC-CCCCeEEECCCceEeCC-CCCCCCEEEEE-eeEEeeccccccC--------CeEEEeeeeEEE
Confidence 3678899999999988 78899999999986432 36789999997 5655543221111 112457899999
Q ss_pred Eecc--EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEe
Q 038762 108 TGGG--VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRD 185 (268)
Q Consensus 108 ~G~G--~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~ 185 (268)
+|.| +|||+|+.||..+....+. ...++|.++.+..|+|++|++++++|++.|++++..|++++|+|
T Consensus 74 ~G~G~g~IDG~G~~ww~~~~~~~~~-----------~~~p~p~~i~~~~~~nv~i~~i~l~nsp~w~~~~~~~~nv~i~~ 142 (349)
T d1hg8a_ 74 TGASGHVIDGNGQAYWDGKGSNSNS-----------NQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISG 142 (349)
T ss_dssp EECTTCEEECCGGGTCCSCTTCTTS-----------CCCCSEEEEEEEEESSEEEESCEEECCSSEEEEEESCEEEEEEE
T ss_pred EecCCCEEeCCChHHhcccccCCCC-----------CCCCcceEEEEeccCCeEEEeeEEeCCCceEEEEeccceEEEEE
Confidence 9976 9999999999755433210 11246678999999999999999999999999999999999999
Q ss_pred EEEEcCC------------CCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEE---e
Q 038762 186 MSIYGDF------------NTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK---L 250 (268)
Q Consensus 186 ~~i~~~~------------~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~---i 250 (268)
++|.++. ..+|+||||+.+|++|+|+||.|.++||||++|+ .+||+|+||+|..+ +|++ +
T Consensus 143 i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~gDD~iaik~----~~ni~i~n~~~~~g-hg~sigs~ 217 (349)
T d1hg8a_ 143 LILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS----GTNIVVSNMYCSGG-HGLSIGSV 217 (349)
T ss_dssp EEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS----EEEEEEEEEEEESS-CCEEEEEE
T ss_pred EEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecCCCCceEecc----ccceEEEEEEEeCC-cccccccC
Confidence 9998743 4579999999999999999999999999999998 45666666666543 2332 3
Q ss_pred eeeeeeeEEeEEEEeeE
Q 038762 251 GSASWFDFKALVFDNIT 267 (268)
Q Consensus 251 g~~~~~~~~ni~~~ni~ 267 (268)
|++....++||+|+|++
T Consensus 218 G~~~~~~v~nV~v~n~~ 234 (349)
T d1hg8a_ 218 GGKSDNVVDGVQFLSSQ 234 (349)
T ss_dssp SSSSCCEEEEEEEEEEE
T ss_pred CCcccccEEEEEEEcce
Confidence 44444455555555554
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=100.00 E-value=5.9e-38 Score=272.03 Aligned_cols=215 Identities=16% Similarity=0.249 Sum_probs=162.0
Q ss_pred CchhHHHHHHHHHhCCCCCCCcEEEECCCeEE-EeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeecc
Q 038762 27 IHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL-TATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDV 105 (268)
Q Consensus 27 ~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~-~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv 105 (268)
..|++++|++|+++|.. .++++|++|+|+|+ +.. |+++.++.++. . ..+.. ..| ..| ++. ...+||
T Consensus 8 g~d~~~~i~~a~~~C~~-~~~~~v~vPaG~~l~l~~--l~~g~~v~~~g-~-~~~~~--~~~----~g~-l~~-~~g~ni 74 (339)
T d1ia5a_ 8 GSNGASSASKSKTSCST-IVLSNVAVPSGTTLDLTK--LNDGTHVIFSG-E-TTFGY--KEW----SGP-LIS-VSGSDL 74 (339)
T ss_dssp GGGHHHHHHHHGGGCSE-EEEESCEECTTCCEEECS--CCTTCEEEEES-E-EEECC--CCS----CCC-SEE-EEEESC
T ss_pred CcccHHHHHHHHHhCcC-CCCCeEEECCCCeEeeec--cCCCCEEEeeC-C-ccccc--CCc----cCC-eEE-EEeeeE
Confidence 57999999999999988 78889999999875 222 45666776662 2 22211 112 112 222 455899
Q ss_pred EEEecc--EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEE
Q 038762 106 GITGGG--VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFI 183 (268)
Q Consensus 106 ~I~G~G--~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i 183 (268)
+|+|.| +|||+|+.||..+... ....||++|.|.+|+|++|++++++|+|.|++++..|++++|
T Consensus 75 ~i~G~g~g~IDG~G~~wW~~~~~~--------------~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i 140 (339)
T d1ia5a_ 75 TITGASGHSINGDGSRWWDGEGGN--------------GGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTL 140 (339)
T ss_dssp EEEECTTCEEECCGGGTCSSCTTT--------------SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEE
T ss_pred EEEecCCCeEeCCchhhhhcccCC--------------CCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEEEE
Confidence 999976 9999999999754322 234689999999999999999999999999999999999999
Q ss_pred EeEEEEcCC----CCCCCceeeecCcccEEEEeeEEecCCceeeecCCC-------------------------CCeecE
Q 038762 184 RDMSIYGDF----NTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT-------------------------GPLYNL 234 (268)
Q Consensus 184 ~~~~i~~~~----~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~-------------------------~~~~nv 234 (268)
+|++|.++. .++|+||||+.+|++|+|+||.|.++||||++|++. +.++||
T Consensus 141 ~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~~ni~i~n~~c~~ghG~sigslG~~~~~~v~nV 220 (339)
T d1ia5a_ 141 KDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNV 220 (339)
T ss_dssp ESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSEEEEEEESCEEESSSCEEEEEECSSSCCEEEEE
T ss_pred EEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecCccEEEEEEeEEeccccceecccccCccccEEEE
Confidence 999999863 467999999999999999999999999999999830 235666
Q ss_pred EEEceEEecCCccEEeee--eeeeeEEeEEEEeeEC
Q 038762 235 TATDSWIRTKSSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 235 ~v~n~~~~~~~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
+|+||++.++.+|++|.+ ..++.++||+|+|++|
T Consensus 221 ~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~ 256 (339)
T d1ia5a_ 221 TFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITL 256 (339)
T ss_dssp EEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEE
T ss_pred EEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEE
Confidence 666666666666665533 2233455555555443
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Probab=100.00 E-value=2.8e-37 Score=268.04 Aligned_cols=174 Identities=16% Similarity=0.271 Sum_probs=142.3
Q ss_pred CCCchhHHHHHHHH-HhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeee
Q 038762 25 DGIHYDTAAIQSAI-DACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENAT 103 (268)
Q Consensus 25 dg~~d~t~aiq~Ai-~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (268)
||.+|+|+|+.+|+ ++|+. .++++|+||+|+|+.-+ -|+++++|.++ +++.+.. ..|. .+ + .....+
T Consensus 1 dg~t~~t~a~~~a~~~aC~~-~~~~~v~VP~G~~l~l~-~l~~g~~~~~~--g~~~~~~--~~w~----~~-~-~~~~~~ 68 (335)
T d1czfa_ 1 DSCTFTTAAAAKAGKAKCST-ITLNNIEVPAGTTLDLT-GLTSGTKVIFE--GTTTFQY--EEWA----GP-L-ISMSGE 68 (335)
T ss_dssp CEEEESSHHHHHHHGGGCSE-EEEESCEECTTCCEEEC-SCCTTCEEEEE--SEEEECC--CCSC----CC-S-EEEEEE
T ss_pred CCcccchHHHHHHHHHHCCC-CCCCeEEECCCCEEecc-cCCCCCEEEEE--eEEeccc--ccCC----CC-E-EEEecc
Confidence 67899999988886 56877 77899999999986321 16678889887 3455532 2231 11 2 235679
Q ss_pred ccEEEecc--EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecE
Q 038762 104 DVGITGGG--VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNT 181 (268)
Q Consensus 104 nv~I~G~G--~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv 181 (268)
||+|+|.| +|||+|+.||..... ....||+++.|.+|+|++|++++++|+|.|++++ .|+|+
T Consensus 69 ni~i~G~g~g~IDG~G~~ww~~~~~---------------~~~~rP~~~~~~~~~nv~i~gi~~~nsp~w~~~i-~~~nv 132 (335)
T d1czfa_ 69 HITVTGASGHLINCDGARWWDGKGT---------------SGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDI 132 (335)
T ss_dssp SCEEEECTTCEEECCGGGTCCSCTT---------------SSSCCCCCEEEEEEETEEEESCEEECCSSCCEEE-ECSSE
T ss_pred eEEEEeCCCCEEcCCCHHHhccCCC---------------CCCCCceEEEEecceEEEEEeeEEEcCCceEEEE-eeeeE
Confidence 99999965 999999999975332 2346899999999999999999999999999998 59999
Q ss_pred EEEeEEEEcC----CCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 182 FIRDMSIYGD----FNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 182 ~i~~~~i~~~----~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
+|++++|.++ ..++|+||||+.+|++|+|+||.|.++||||++|+
T Consensus 133 ~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~tgDDcIaiks 181 (335)
T d1czfa_ 133 TFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS 181 (335)
T ss_dssp EEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS
T ss_pred EEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEecCCceEEecC
Confidence 9999999875 34679999999999999999999999999999998
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=8.3e-39 Score=282.32 Aligned_cols=232 Identities=14% Similarity=0.077 Sum_probs=183.9
Q ss_pred eccccCCCCchhHHHHHHHH-HhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCce--E
Q 038762 19 DFGAKGDGIHYDTAAIQSAI-DACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRW--Y 95 (268)
Q Consensus 19 dyga~~dg~~d~t~aiq~Ai-~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~--~ 95 (268)
.|||+|++.+|+|+|||+|+ ++|.. .++++||||||+|+++++.++++.++.++ |+ ++.+.....|... ..+ .
T Consensus 2 ~~ga~p~~~~d~t~a~~~a~~~~~~~-~~~~vvy~PpG~y~~g~~~~~~~~~~~~~-g~-~l~~~~~~~y~~~-G~~~~~ 77 (373)
T d1ogmx2 2 PSGMIPHMTPDNTQTMTPGPINNGDW-GAKSILYFPPGVYWMNQDQSGNSGKLGSN-HI-RLNSNTYWVYLAP-GAYVKG 77 (373)
T ss_dssp CGGGSCCCCTTTEEECCSEEECTTTT-CSSSEEEECSEEEEECBCTTCCBSCSSSC-CE-ECCTTCCEEEECT-TEEEES
T ss_pred CCCccCCCCCCchHHhhhhhhhhccc-CCCCEEEECCceeEeCCeeecCceEEEcC-ce-EeccCceEEecCC-CcEEEe
Confidence 69999999999999999995 66665 67889999999999999988888887775 33 3333322222211 111 1
Q ss_pred EEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEE
Q 038762 96 VVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHI 175 (268)
Q Consensus 96 ~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~ 175 (268)
.+.+.+.+|++|.|.|+|||+|..||......... ... ......+|+++.|..|+|++|+++++++++.|++++
T Consensus 78 ~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~---~~~---~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~ 151 (373)
T d1ogmx2 78 AIEYFTKQNFYATGHGILSGENYVYQANAGDNYIA---VKS---DSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDF 151 (373)
T ss_dssp CEEECCSSCEEEESSCEEECTTSCTTCBTTTTTBS---CCC---TTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEE
T ss_pred EEEecCcceEEEEcceEEcCCcceecccccccccc---ccc---CCcccCCceEEEEEcceEEEEeCEEEECCCeeEEEE
Confidence 34568999999999999999999999865433110 000 112235889999999999999999999999999999
Q ss_pred eeeecEEEEeEEEEc-CCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc--EEeee
Q 038762 176 VRCDNTFIRDMSIYG-DFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA--IKLGS 252 (268)
Q Consensus 176 ~~~~nv~i~~~~i~~-~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g--i~ig~ 252 (268)
..|++++++++++.. +..++++||||+ |++++|+||.+.++||||++|+ +|++|+||+++..+.+ +++|+
T Consensus 152 ~~~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~~~~~~gDD~i~~~s-----~~i~v~n~~~~~~~~~~~~~~g~ 224 (373)
T d1ogmx2 152 NGNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVNDDAIKIYY-----SGASVSRATIWKCHNDPIIQMGW 224 (373)
T ss_dssp CSSSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEEEEEEESSCSEECCS-----TTCEEEEEEEEECSSSCSEECCS
T ss_pred ccCCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEeeEEecCCCEEEecC-----CCEEEEEEEEECCCceeEEEecc
Confidence 999999999999974 556789999998 6899999999999999999998 6999999999976544 66665
Q ss_pred eeeeeEEeEEEEeeEC
Q 038762 253 ASWFDFKALVFDNITI 268 (268)
Q Consensus 253 ~~~~~~~ni~~~ni~i 268 (268)
. +..++|+.|+||+|
T Consensus 225 ~-g~~i~nv~v~ni~v 239 (373)
T d1ogmx2 225 T-SRDISGVTIDTLNV 239 (373)
T ss_dssp S-CCCEEEEEEEEEEE
T ss_pred C-CCCcceeEEEeeEE
Confidence 4 34688888888875
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Probab=100.00 E-value=3.3e-37 Score=267.22 Aligned_cols=214 Identities=17% Similarity=0.331 Sum_probs=165.4
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeee-ccEE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENAT-DVGI 107 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~-nv~I 107 (268)
.+++|||+|+++|.. .++++|+||+|+|+.-. .|+.+.+|.++ +++.+.. ..| ... ++++.+.+ ++++
T Consensus 6 ~~~~~i~~ai~~C~~-~~~~~v~VP~G~~l~l~-~~~~g~~v~~~--g~~~~~~--~~~---~g~--~~~~~g~~~~i~~ 74 (336)
T d1nhca_ 6 TSASEASESISSCSD-VVLSSIEVPAGETLDLS-DAADGSTITFE--GTTSFGY--KEW---KGP--LIRFGGKDLTVTM 74 (336)
T ss_dssp SSHHHHHHHGGGCSE-EEEESCEECTTCCEECT-TCCTTCEEEEE--SEEEECC--CCS---CCC--SEECCEESCEEEE
T ss_pred CcHHHHHHHHHHCcC-CCCCeEEECCCCeEeCC-CCCCCCEEEEE--EEEeccc--ccc---cCc--eEEEEEEEEEEEE
Confidence 578999999999988 78899999999986321 14556788887 4455432 223 122 33333433 6777
Q ss_pred EeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEE
Q 038762 108 TGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMS 187 (268)
Q Consensus 108 ~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~ 187 (268)
.|.|+|||+|..||...... ....||++|.|.+|+|++|++++++|++.|++++ .|+|++|++++
T Consensus 75 ~G~G~IDG~G~~ww~~~~~~--------------~~~~rP~~i~~~~~~nv~i~giti~nsp~~~i~i-~~~nv~i~nv~ 139 (336)
T d1nhca_ 75 ADGAVIDGDGSRWWDSKGTN--------------GGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFT 139 (336)
T ss_dssp CTTCEEECCGGGTCCSCTTT--------------SSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEE-EEEEEEEESCE
T ss_pred eCCeEEeCCcHHHhcccccC--------------CCCCCCeEEEEeccCCcEEEeEEEEcCCceEEEE-eeeEEEEEEEE
Confidence 78899999999999654322 2346899999999999999999999999999997 69999999999
Q ss_pred EEcCCC----CCCCceeeecCcccEEEEeeEEecCCceeeecCC-------------------------CCCeecEEEEc
Q 038762 188 IYGDFN----TPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY-------------------------TGPLYNLTATD 238 (268)
Q Consensus 188 i~~~~~----~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~-------------------------~~~~~nv~v~n 238 (268)
|.++.. .+|+||||+.+|++|+|+||.+.++||||++|++ .+.++||+|+|
T Consensus 140 I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDDcIaik~g~ni~i~n~~c~~~~g~sigslG~~~~~~v~nV~v~n 219 (336)
T d1nhca_ 140 IDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISD 219 (336)
T ss_dssp EECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESSEEEEEEESCEEESSSEEEEEEESSSSCCEEEEEEEEE
T ss_pred EECcCCCccccCCCceEEcCCccCEeEecceEeecCCcEEeeccceEEEEEeeecccccceeeeccccccccEEEEEEEe
Confidence 998643 5799999999999999999999999999999973 12478888888
Q ss_pred eEEecCCccEEeee--eeeeeEEeEEEEeeEC
Q 038762 239 SWIRTKSSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 239 ~~~~~~~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
|++.++.+|++|.+ ...+.++||+|+|++|
T Consensus 220 ~~~~~t~~G~rIKt~~~~~G~v~nV~f~ni~~ 251 (336)
T d1nhca_ 220 STVSNSANGVRIKTIYKETGDVSEITYSNIQL 251 (336)
T ss_dssp EEEESCSEEEEEEEETTCCCEEEEEEEEEEEE
T ss_pred ceeeCCCceeEEEEecCCCceEeeEEEEeEEE
Confidence 88888888877743 2344566666666654
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Probab=100.00 E-value=4.4e-34 Score=245.91 Aligned_cols=203 Identities=14% Similarity=0.172 Sum_probs=152.5
Q ss_pred HHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEecc
Q 038762 32 AAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGG 111 (268)
Q Consensus 32 ~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G 111 (268)
.+.++|+++|.. .++++|++|+|+|+ .|.+.++.+|.++ |. +.+... .|. .+++.+ ..++|+|+|.|
T Consensus 6 ~~~a~~i~~Cs~-~~~~~v~VPaG~~l--~L~~~~g~~v~f~-G~-~~~~~~--~w~-----gpl~~~-~g~~i~i~G~g 72 (333)
T d1k5ca_ 6 VDDAKDIAGCSA-VTLNGFTVPAGNTL--VLNPDKGATVTMA-GD-ITFAKT--TLD-----GPLFTI-DGTGINFVGAD 72 (333)
T ss_dssp TTGGGGCTTCSE-EEECCEEECTTCCE--EECCCTTCEEEEC-SC-EEECCC--CSC-----SCSEEE-EEEEEEEECTT
T ss_pred hHhhhhHhhCcC-CCCCeEEECCCCEE--EEecccCCEEEEe-ee-Eecccc--ccc-----CCEEEE-EeceEEEEcCC
Confidence 345677889988 78899999999986 3446667777776 33 333221 121 123443 56999999965
Q ss_pred -EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeee-cEEEEeEEEE
Q 038762 112 -VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCD-NTFIRDMSIY 189 (268)
Q Consensus 112 -~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~-nv~i~~~~i~ 189 (268)
+|||+|+.||...... ....||+++.+..+++ .|++++++|+|.|++++..|+ +++++|++|.
T Consensus 73 gvIDG~G~~wW~~~~~~--------------~~~~rP~~~~~~~~~~-~i~~i~~~nsp~~~~~i~~~~~~v~i~nv~I~ 137 (333)
T d1k5ca_ 73 HIFDGNGALYWDGKGTN--------------NGTHKPHPFLKIKGSG-TYKKFEVLNSPAQAISVGPTDAHLTLDGITVD 137 (333)
T ss_dssp CEEECCGGGTCCSCTTT--------------SSSCCCCCSEEEEEEE-EEESCEEESCSSCCEEEEEEEEEEEEESCEEE
T ss_pred CeEeCCchHHhcccCCC--------------CCCCCCeEEEEEecCc-eEEEEEEEECCceEEEEecccCcEEEEeEEEE
Confidence 7999999999754322 2345788777776665 599999999999999999997 8999999987
Q ss_pred cC-----CCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeeee-eeeEEeEEE
Q 038762 190 GD-----FNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS-WFDFKALVF 263 (268)
Q Consensus 190 ~~-----~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~-~~~~~ni~~ 263 (268)
+. ..++|+||||+ .|++|+|+||.|.++||||++|+ .+||+|+||++..+ ||++|||+. +..++||+|
T Consensus 138 ~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~gDDcIaik~----g~ni~i~n~~c~~g-hGisiGS~g~~~~V~nV~v 211 (333)
T d1k5ca_ 138 DFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAIND----GNNIRFENNQCSGG-HGISIGSIATGKHVSNVVI 211 (333)
T ss_dssp CGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEE----EEEEEEESCEEESS-CCEEEEEECTTCEEEEEEE
T ss_pred eeecCCCccCCCcceEeE-ecceEEEEecEEecCCCEEEEcC----ccEEEEEEEEECCC-CceeeecccCCCcEEEEEE
Confidence 63 45789999999 48999999999999999999997 46777777777764 477777753 345777777
Q ss_pred EeeEC
Q 038762 264 DNITI 268 (268)
Q Consensus 264 ~ni~i 268 (268)
+|++|
T Consensus 212 ~n~~~ 216 (333)
T d1k5ca_ 212 KGNTV 216 (333)
T ss_dssp ESCEE
T ss_pred EEeEE
Confidence 77764
|
| >d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=99.70 E-value=1.9e-16 Score=136.09 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=119.7
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
+++++.+.++++|.+.+ ..|... ..+..++.+.+++|+.|+|- ++.. .
T Consensus 72 ~ni~i~G~g~g~IDG~G--~~wW~~~~~~~~~~rP~~l~~~~~~nv~i~gi-tl~n--s--------------------- 125 (339)
T d1ia5a_ 72 SDLTITGASGHSINGDG--SRWWDGEGGNGGKTKPKFFAAHSLTNSVISGL-KIVN--S--------------------- 125 (339)
T ss_dssp ESCEEEECTTCEEECCG--GGTCSSCTTTSSSCCCCCEEEEEEEEEEEESC-EEEC--C---------------------
T ss_pred eeEEEEecCCCeEeCCc--hhhhhcccCCCCCCCCeEEEEEecCCCEEece-EEEc--C---------------------
Confidence 68999998777888754 233322 12334677899999999993 3321 1
Q ss_pred CCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCC----------------C
Q 038762 140 CSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNT----------------P 195 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~----------------~ 195 (268)
..+.+++.+|+|++|+|+++.++. ..|+++..|+|++|+|+.|...++. .
T Consensus 126 ------p~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~~ni~i~n~~c~ 199 (339)
T d1ia5a_ 126 ------PVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCS 199 (339)
T ss_dssp ------SSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSEEEEEEESCEEE
T ss_pred ------CceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecCccEEEEEEeEEe
Confidence 123578888888888888887641 2588888888888888888764331 1
Q ss_pred CCceeeec--------CcccEEEEeeEEecCCceeeecCC---CCCeecEEEEceEEecC-CccEEeee---------ee
Q 038762 196 NNDGIDIE--------DSNNTVITRVQIDTGDDAICPKTY---TGPLYNLTATDSWIRTK-SSAIKLGS---------AS 254 (268)
Q Consensus 196 ~~DGi~~~--------~~~~v~I~n~~i~~gDD~i~i~s~---~~~~~nv~v~n~~~~~~-~~gi~ig~---------~~ 254 (268)
...|+-+. .-++|+++||.|...+.++.+|+. .+.++||+|+|.++.+. ..+|.|-. .+
T Consensus 200 ~ghG~sigslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~~~~ 279 (339)
T d1ia5a_ 200 GGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTT 279 (339)
T ss_dssp SSSCEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCCCS
T ss_pred ccccceecccccCccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCCCCC
Confidence 23333221 136899999999988899999863 35799999999999985 46887732 23
Q ss_pred eeeEEeEEEEeeE
Q 038762 255 WFDFKALVFDNIT 267 (268)
Q Consensus 255 ~~~~~ni~~~ni~ 267 (268)
...|+||+|+||+
T Consensus 280 ~v~i~nI~~~Ni~ 292 (339)
T d1ia5a_ 280 GVPITDFVLDNVH 292 (339)
T ss_dssp SSCEEEEEEEEEE
T ss_pred CcEEEeEEEEeEE
Confidence 3479999999986
|
| >d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fusarium moniliforme [TaxId: 117187]
Probab=99.69 E-value=9.7e-16 Score=132.53 Aligned_cols=166 Identities=13% Similarity=0.191 Sum_probs=126.4
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC---------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE---------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~---------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
+++++.+.++++|.+.+ ..|... ..+..++.+..++|++|+|--..+.
T Consensus 69 ~ni~I~G~G~g~IDG~G--~~ww~~~~~~~~~~~~p~p~~i~~~~~~nv~i~~i~l~ns--------------------- 125 (349)
T d1hg8a_ 69 SNITITGASGHVIDGNG--QAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNW--------------------- 125 (349)
T ss_dssp ESCEEEECTTCEEECCG--GGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECC---------------------
T ss_pred eeEEEEecCCCEEeCCC--hHHhcccccCCCCCCCCcceEEEEeccCCeEEEeeEEeCC---------------------
Confidence 68899998767888753 223211 1233467789999999999322221
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----------------CcEEEEeeeecEEEEeEEEEcCCCCCCCcee
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----------------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI 200 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----------------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi 200 (268)
..+.+++.+|+|++|+|+++.+++ ..|+.+..|+|++|+|+.|.. ..|.|
T Consensus 126 ---------p~w~~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~-----gDD~i 191 (349)
T d1hg8a_ 126 ---------PVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCV 191 (349)
T ss_dssp ---------SSEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSE
T ss_pred ---------CceEEEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecC-----CCCce
Confidence 234689999999999999998743 358999999999999999997 78999
Q ss_pred eecCcccEEEEeeEEecCCce--eeecCC-CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 201 DIEDSNNTVITRVQIDTGDDA--ICPKTY-TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 201 ~~~~~~~v~I~n~~i~~gDD~--i~i~s~-~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
.+..+++|+|+||.+..+.-+ .+++++ .+.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 192 aik~~~ni~i~n~~~~~ghg~sigs~G~~~~~~v~nV~v~n~~~~~~~~g~rIKs~~g~gG~v~nI~~~ni~~ 264 (349)
T d1hg8a_ 192 AVTSGTNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIAL 264 (349)
T ss_dssp EESSEEEEEEEEEEEESSCCEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEE
T ss_pred EeccccceEEEEEEEeCCcccccccCCCcccccEEEEEEEcceecCCcceEEEEEEcCCCccEEEeEEEEEEE
Confidence 999999999999999876522 235543 35799999999999999999888543 445677777777765
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=99.64 E-value=5.5e-15 Score=129.09 Aligned_cols=137 Identities=15% Similarity=0.222 Sum_probs=109.1
Q ss_pred EEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----Cc
Q 038762 96 VVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YW 171 (268)
Q Consensus 96 ~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~ 171 (268)
++.+.+++|++|+|- ++... ....+.+..|++++|+|+++.+.. ..
T Consensus 153 ~i~~~~~~nv~i~~i-ti~ns-----------------------------~~~~~~~~~~~~v~i~n~~I~~~~~~~NtD 202 (376)
T d1bhea_ 153 LIQINKSKNFTLYNV-SLINS-----------------------------PNFHVVFSDGDGFTAWKTTIKTPSTARNTD 202 (376)
T ss_dssp SEEEESCEEEEEEEE-EEECC-----------------------------SSCSEEEESCEEEEEEEEEEECCTTCSSCC
T ss_pred EEEEEecccEEEEee-EEecC-----------------------------CceEEEEeCCceEEEEeEeccCCccCCCcc
Confidence 567788899998882 33211 123588999999999999998743 35
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeec------CcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCC
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE------DSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~------~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~ 245 (268)
|+.+..|+|++|+|+.|.. ..|+|.+. .++||+|+||.+..+. ++.+++.....+||+|+||++.++.
T Consensus 203 Gidi~~s~nv~I~n~~i~~-----gDD~i~~ks~~~~~~~~ni~i~n~~~~~~~-g~~iGs~~~~v~nv~i~n~~~~~~~ 276 (376)
T d1bhea_ 203 GIDPMSSKNITIAYSNIAT-----GDDNVAIKAYKGRAETRNISILHNDFGTGH-GMSIGSETMGVYNVTVDDLKMNGTT 276 (376)
T ss_dssp SEEEESCEEEEEESCEEEC-----SSCSEEEEECTTSCCEEEEEEEEEEECSSS-CEEEEEEESSEEEEEEEEEEEESCS
T ss_pred eeeccccceEEEEeceeec-----CCCceeeecccCCCCcceEEEEeeEEecCC-CceeccccCCEEEEEEEeeeEcCCC
Confidence 8999999999999999986 67777664 3679999999998754 7888887777999999999999998
Q ss_pred ccEEeeee--eeeeEEeEEEEeeEC
Q 038762 246 SAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 246 ~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
+|++|.+. .++.++||+|+|++|
T Consensus 277 ~g~~Iks~~~~gG~v~nI~f~ni~~ 301 (376)
T d1bhea_ 277 NGLRIKSDKSAAGVVNGVRYSNVVM 301 (376)
T ss_dssp EEEEEECCTTTCCEEEEEEEEEEEE
T ss_pred ceEEEEecCCCccEEEEEEEEeEEE
Confidence 99888653 355788888888775
|
| >d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: iota-carrageenase domain: iota-carrageenase species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=99.63 E-value=1.3e-13 Score=112.86 Aligned_cols=201 Identities=19% Similarity=0.226 Sum_probs=128.1
Q ss_pred eeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEE
Q 038762 17 VIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYV 96 (268)
Q Consensus 17 v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~ 96 (268)
|.|||+.++...||+.++|.||+++++..+||+|.+|.|+|.+..|.++||++|+++++.+|..... .....+-+
T Consensus 25 v~d~g~n~nDt~dDs~~L~~Ain~~sr~~~GG~l~lp~g~y~l~~I~m~SNVhievE~~~viyPT~~-----~d~KNhrl 99 (464)
T d1h80a_ 25 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWN-----GDGKNHRL 99 (464)
T ss_dssp HHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEECCC-----TTCSCEEE
T ss_pred hhhcccCCCcccCcHHHHHHHHHHhhcCCCCcEEEEeCCcEEEEEEeeccceEEEEecCeEEeecCC-----CCccccee
Confidence 4789999999999999999999988665789999999999999999999999999999988887533 11233445
Q ss_pred EEE---EeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCC
Q 038762 97 VLA---ENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAY 170 (268)
Q Consensus 97 i~~---~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~ 170 (268)
|.+ +..+|+.|.|.| +||-.+.. . .....+.+.+++|+.|+|++|.+-..
T Consensus 100 F~fg~~n~veN~si~g~G~~FtID~~~n~-------~-----------------kN~~~v~lg~V~nfkIsnf~I~DnkT 155 (464)
T d1h80a_ 100 FEVGVNNIVRNFSFQGLGNGFLVDFKDSR-------D-----------------KNLAVFKLGDVRNYKISNFTIDDNKT 155 (464)
T ss_dssp EEESSSSCEEEEEEEECTTCEEEECTTCS-------C-----------------CBEEEEEECSEEEEEEEEEEEECCSC
T ss_pred eeecccceeeeEEEEecCCcEEEEcccCC-------C-----------------CceeeEEeeeeeeeeeeeeeeccCce
Confidence 543 467888888863 34432210 0 12246778889999999999987321
Q ss_pred --cEEEEe---------eeecEEEEeEEEEcCCCCCCCcee-eecCcccEEEEeeEEecCCceeeecCC--------CCC
Q 038762 171 --WCLHIV---------RCDNTFIRDMSIYGDFNTPNNDGI-DIEDSNNTVITRVQIDTGDDAICPKTY--------TGP 230 (268)
Q Consensus 171 --~~i~~~---------~~~nv~i~~~~i~~~~~~~~~DGi-~~~~~~~v~I~n~~i~~gDD~i~i~s~--------~~~ 230 (268)
..|.+. ...+-.|+++.-... ..+.|+ ...+..+|.+.|..-.+| -++.+.+. .++
T Consensus 156 ~~asIlvdf~dk~g~~~~p~kGiIenIkq~~A---htGYGlIQ~YggD~Ilf~nl~~~gG-I~lRLEtdn~~mkN~kk~G 231 (464)
T d1h80a_ 156 IFASILVDVTERNGRLHWSRNGIIERIKQNNA---LFGYGLIQTYGADNILFRNLHSEGG-IALRMETDNLLMKNYKQGG 231 (464)
T ss_dssp BSCSEEECEEEETTEEEEEEEEEEEEEEEESC---CTTCEEEEESEEEEEEEEEEEEESS-EEEEEECCCHHHHHHTCCE
T ss_pred EEEEEEEeeecccCCcCCCccchhhhhhhcCc---cccceEEEeeccceEEEccccccCC-eEEEEecCCchhhhhhhcc
Confidence 122221 223345555555442 233333 334455666666554433 12233332 134
Q ss_pred eecEEEEceEEecCCccEEe
Q 038762 231 LYNLTATDSWIRTKSSAIKL 250 (268)
Q Consensus 231 ~~nv~v~n~~~~~~~~gi~i 250 (268)
.++|-+.|..+..+-.++-+
T Consensus 232 m~~IfatNIk~TnGlt~Vml 251 (464)
T d1h80a_ 232 IRNIFADNIRCSKGLAAVMF 251 (464)
T ss_dssp EEEEEEEEEEEESSSEEEEE
T ss_pred hhhheeeeeeecCCccceee
Confidence 66666666666554444443
|
| >d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Probab=99.62 E-value=7.7e-15 Score=125.84 Aligned_cols=169 Identities=12% Similarity=0.219 Sum_probs=114.0
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGA 139 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~ 139 (268)
.++++.+.++++|.+.+ ..|... ..+..++.+.+++|++|+|--..+ .++
T Consensus 68 ~~~~i~~~G~G~IDG~G--~~ww~~~~~~~~~~rP~~i~~~~~~nv~i~giti~n---sp~------------------- 123 (336)
T d1nhca_ 68 KDLTVTMADGAVIDGDG--SRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKN---TPV------------------- 123 (336)
T ss_dssp ESCEEEECTTCEEECCG--GGTCCSCTTTSSSCCCCCEEEEEEEEEEEESCEEEC---CSS-------------------
T ss_pred EEEEEEEeCCeEEeCCc--HHHhcccccCCCCCCCeEEEEeccCCcEEEeEEEEc---CCc-------------------
Confidence 46678887788998744 233211 112346778999999999932222 122
Q ss_pred CCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCC----------------C
Q 038762 140 CSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNT----------------P 195 (268)
Q Consensus 140 ~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~----------------~ 195 (268)
+.+++ +|+|++|+|+++.++. ..|+++..|+|++|+|+.|...++. .
T Consensus 124 --------~~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDDcIaik~g~ni~i~n~~c~ 194 (336)
T d1nhca_ 124 --------QAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGTCS 194 (336)
T ss_dssp --------CCEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESSEEEEEEESCEEE
T ss_pred --------eEEEE-eeeEEEEEEEEEECcCCCccccCCCceEEcCCccCEeEecceEeecCCcEEeeccceEEEEEeeec
Confidence 23555 5788888888888753 2478888888888888888753210 0
Q ss_pred CCceeeec--------CcccEEEEeeEEecCCceeeecCC---CCCeecEEEEceEEecCC-ccEEeeee----------
Q 038762 196 NNDGIDIE--------DSNNTVITRVQIDTGDDAICPKTY---TGPLYNLTATDSWIRTKS-SAIKLGSA---------- 253 (268)
Q Consensus 196 ~~DGi~~~--------~~~~v~I~n~~i~~gDD~i~i~s~---~~~~~nv~v~n~~~~~~~-~gi~ig~~---------- 253 (268)
...|+-+. .-++|+|+||.+...+.++.+|+. .+.++||+|+|.++.+.. .+|.|-..
T Consensus 195 ~~~g~sigslG~~~~~~v~nV~v~n~~~~~t~~G~rIKt~~~~~G~v~nV~f~ni~~~~V~~~pi~I~~~Y~~~~~~~~~ 274 (336)
T d1nhca_ 195 GGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTP 274 (336)
T ss_dssp SSSEEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEEETTEECSCC
T ss_pred ccccceeeeccccccccEEEEEEEeceeeCCCceeEEEEecCCCceEeeEEEEeEEEeccccccEEEEeeccCCCCcCCC
Confidence 12233221 136889999999888889999863 457999999999999864 57777321
Q ss_pred -eeeeEEeEEEEeeE
Q 038762 254 -SWFDFKALVFDNIT 267 (268)
Q Consensus 254 -~~~~~~ni~~~ni~ 267 (268)
+...|+||+|+|++
T Consensus 275 ~~~v~I~nIt~~ni~ 289 (336)
T d1nhca_ 275 STGIPITDVTVDGVT 289 (336)
T ss_dssp CSSSCEEEEEEEEEE
T ss_pred CCCeeEEeEEEEeEE
Confidence 23359999999986
|
| >d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Probab=99.61 E-value=5.3e-15 Score=127.02 Aligned_cols=164 Identities=11% Similarity=0.106 Sum_probs=122.6
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC-----CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE-----SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGAC 140 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~-----~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~ 140 (268)
+++++.+.++++|.+.+. .|... ..+..++.+.+++|+.|+|- ++.. .+
T Consensus 68 ~ni~i~G~g~g~IDG~G~--~ww~~~~~~~~~rP~~~~~~~~~nv~i~gi-~~~n--sp--------------------- 121 (335)
T d1czfa_ 68 EHITVTGASGHLINCDGA--RWWDGKGTSGKKKPKFFYAHGLDSSSITGL-NIKN--TP--------------------- 121 (335)
T ss_dssp ESCEEEECTTCEEECCGG--GTCCSCTTSSSCCCCCEEEEEEETEEEESC-EEEC--CS---------------------
T ss_pred ceEEEEeCCCCEEcCCCH--HHhccCCCCCCCCceEEEEecceEEEEEee-EEEc--CC---------------------
Confidence 588999887778887442 33221 12224667899999999993 3221 12
Q ss_pred CCCCCCceEEEEeccccEEEEeEEEeCCC--------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEe
Q 038762 141 SGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITR 212 (268)
Q Consensus 141 ~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n 212 (268)
.+.+++ +|+|++|+|+++.+.. ..|+++..|+||+|+|+.|.. ..|+|.+.+++++.|+|
T Consensus 122 ------~w~~~i-~~~nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~t-----gDDcIaiks~~ni~i~n 189 (335)
T d1czfa_ 122 ------LMAFSV-QANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTG 189 (335)
T ss_dssp ------SCCEEE-ECSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEES
T ss_pred ------ceEEEE-eeeeEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEec-----CCceEEecCceEEEEEE
Confidence 224666 5999999999998742 358999999999999999996 89999999999999999
Q ss_pred eEEecCCceee---ecCC-CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 213 VQIDTGDDAIC---PKTY-TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 213 ~~i~~gDD~i~---i~s~-~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
|.+..+. +++ ++++ .+.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 190 ~~c~~~h-G~sigslG~~~~~~v~nV~v~n~~i~~t~~g~rIKt~~g~~G~v~nI~~~ni~m 250 (335)
T d1czfa_ 190 GTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVM 250 (335)
T ss_dssp CEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEE
T ss_pred EEEECCC-CccccccCCCCcCCEeEEEEEeeEEECCCccceEeccCCCCccEeEEEEEeEEE
Confidence 9987654 443 4543 35699999999999999999888553 345677777777765
|
| >d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Probab=99.45 E-value=3.6e-13 Score=114.74 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=93.6
Q ss_pred EEEEeccc-cEEEEeEEEeCC--------C-CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC
Q 038762 149 LVGFLGCR-NVNVWNVRLREP--------A-YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG 218 (268)
Q Consensus 149 ~i~~~~~~-nv~I~~v~i~n~--------~-~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g 218 (268)
.+++..|+ |++++|+++.+. + ..|+++ .|++|+|+|+.|.. ..|.|-+.+++||+|+||.+..+
T Consensus 119 ~~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~-----gDDcIaik~g~ni~i~n~~c~~g 192 (333)
T d1k5ca_ 119 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIRFENNQCSGG 192 (333)
T ss_dssp CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEEEESCEEESS
T ss_pred EEEEecccCcEEEEeEEEEeeecCCCccCCCcceEeE-ecceEEEEecEEec-----CCCEEEEcCccEEEEEEEEECCC
Confidence 47777775 899999999862 2 368998 59999999999996 78899998889999999999887
Q ss_pred CceeeecCCC--CCeecEEEEceEEecCCccEEeeee---eeeeEEeEEEEeeEC
Q 038762 219 DDAICPKTYT--GPLYNLTATDSWIRTKSSAIKLGSA---SWFDFKALVFDNITI 268 (268)
Q Consensus 219 DD~i~i~s~~--~~~~nv~v~n~~~~~~~~gi~ig~~---~~~~~~ni~~~ni~i 268 (268)
. +++++|.. +.++||+|+||+|.++.+|++|.+. .++.++||+|+|++|
T Consensus 193 h-GisiGS~g~~~~V~nV~v~n~~~~~t~~G~rIKt~~~~~~G~v~nI~f~ni~m 246 (333)
T d1k5ca_ 193 H-GISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTI 246 (333)
T ss_dssp C-CEEEEEECTTCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEESCEE
T ss_pred C-ceeeecccCCCcEEEEEEEEeEEeCCcEEEEEEEccCCCceEEEEEEEEEEEE
Confidence 6 89999853 3489999999999999999998652 345788888888775
|
| >d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Rhamnogalacturonase A species: Aspergillus aculeatus [TaxId: 5053]
Probab=99.38 E-value=1.1e-11 Score=109.21 Aligned_cols=137 Identities=9% Similarity=0.169 Sum_probs=104.8
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC---Cc
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA---YW 171 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---~~ 171 (268)
.++.+.+++|+.|+|--..+. ....+.+..|++++|+|+++.... ..
T Consensus 128 ~~l~~~~~~n~~i~git~~ns------------------------------p~~~i~i~~c~~v~i~nv~I~~~~~~NtD 177 (422)
T d1rmga_ 128 RILRLTDVTHFSVHDIILVDA------------------------------PAFHFTMDTCSDGEVYNMAIRGGNEGGLD 177 (422)
T ss_dssp EEEEEEEEEEEEEEEEEEECC------------------------------SSCSEEEEEEEEEEEEEEEEECCSSTTCC
T ss_pred cEEEEEeeeeeEEECcEecCC------------------------------CceEEEEeccccEEEEeeEEcCCCCCccc
Confidence 466788999999998322221 122488899999999999998532 24
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCCceeeecCCC--CCeecEEEEceEEecCCccE
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGDDAICPKTYT--GPLYNLTATDSWIRTKSSAI 248 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gDD~i~i~s~~--~~~~nv~v~n~~~~~~~~gi 248 (268)
|+++.. .|++|+|+.|.. ..|+|.+. +|++|+|+|+....+. ++++++.. ..++||+|+||++.++.+|+
T Consensus 178 GIdi~~-snv~I~n~~i~~-----gDDcIaiks~s~nI~i~n~~c~~g~-GisiGs~g~~~~V~nV~v~n~~~~~s~~g~ 250 (422)
T d1rmga_ 178 GIDVWG-SNIWVHDVEVTN-----KDECVTVKSPANNILVESIYCNWSG-GCAMGSLGADTDVTDIVYRNVYTWSSNQMY 250 (422)
T ss_dssp SEEEEE-EEEEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEESSS-EEEEEEECTTEEEEEEEEEEEEEESSSCSE
T ss_pred eEeecc-cEEEEEeeEEEc-----CCCccccCCCCccEEEEeeEEcccc-ceeEeeccCCCCEEEEEEEeEEEeCCCceE
Confidence 898865 589999999986 78899887 6789999999887655 88888742 46899999999999988888
Q ss_pred Eeeee-eeeeEEeEEEEeeEC
Q 038762 249 KLGSA-SWFDFKALVFDNITI 268 (268)
Q Consensus 249 ~ig~~-~~~~~~ni~~~ni~i 268 (268)
.+.+. ..+.++||+|+|++|
T Consensus 251 ~ik~~~g~G~V~nI~f~Ni~~ 271 (422)
T d1rmga_ 251 MIKSNGGSGTVSNVLLENFIG 271 (422)
T ss_dssp EEEEBBCCEEEEEEEEEEEEE
T ss_pred EEEEcCCCceecceEEEEEEE
Confidence 77543 224567777777664
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=99.38 E-value=5.8e-12 Score=109.52 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=126.7
Q ss_pred CcEEEECCCeEEEeeEEec--CceEEEEcCCeeEEeCCCCCCCCCC--------------CCceEEEEEEeeeccEEEec
Q 038762 47 PCQVRFPPGEYLTATIRLK--SHVTLNIHEDATLLGGPRIEDYPEE--------------SSRWYVVLAENATDVGITGG 110 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~l~l~--s~~~l~~~~ga~l~~~~~~~~~~~~--------------~~~~~~i~~~~~~nv~I~G~ 110 (268)
.-.+|+++|.|..+.+... +++++.+. ++|.+.+. .|... ..++.++.+..++|+.|+|-
T Consensus 64 ~~~~y~~~G~~~~~~i~~~~~~nv~I~G~--G~idG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~gi 139 (373)
T d1ogmx2 64 TYWVYLAPGAYVKGAIEYFTKQNFYATGH--GILSGENY--VYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGP 139 (373)
T ss_dssp CCEEEECTTEEEESCEEECCSSCEEEESS--CEEECTTS--CTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESC
T ss_pred ceEEecCCCcEEEeEEEecCcceEEEEcc--eEEcCCcc--eecccccccccccccCCcccCCceEEEEEcceEEEEeCE
Confidence 3468999999877766654 57777765 67776432 12110 12345666789999999983
Q ss_pred cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCC-----cEEEEeeeecEEEEe
Q 038762 111 GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAY-----WCLHIVRCDNTFIRD 185 (268)
Q Consensus 111 G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~-----~~i~~~~~~nv~i~~ 185 (268)
++... ....+++..|++++++++++++.+. .++.+ |++++|+|
T Consensus 140 -ti~~s-----------------------------~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~ 187 (373)
T d1ogmx2 140 -TINAP-----------------------------PFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHD 187 (373)
T ss_dssp -EEECC-----------------------------SSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEE
T ss_pred -EEECC-----------------------------CeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEe
Confidence 33221 1236889999999999999976432 35554 88999999
Q ss_pred EEEEcCCCCCCCceeeecCcccEEEEeeEEecC--CceeeecCCCCCeecEEEEceEEecCCccE---------------
Q 038762 186 MSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG--DDAICPKTYTGPLYNLTATDSWIRTKSSAI--------------- 248 (268)
Q Consensus 186 ~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g--DD~i~i~s~~~~~~nv~v~n~~~~~~~~gi--------------- 248 (268)
|.+.. ..|+|.+.+ .+++|+||++... --.+++++..+..+|+.|+||++.+.....
T Consensus 188 ~~~~~-----gDD~i~~~s-~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~~~~~~~~~~~~~~~~~~~~~~ 261 (373)
T d1ogmx2 188 VFWHV-----NDDAIKIYY-SGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPF 261 (373)
T ss_dssp EEEEE-----SSCSEECCS-TTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEEECCCSSCCTTTTCEEEEECCC
T ss_pred eEEec-----CCCEEEecC-CCEEEEEEEEECCCceeEEEeccCCCCcceeEEEeeEEECceeccccccccccccccccc
Confidence 99996 789998864 6999999999873 344677776678999999999987643211
Q ss_pred --EeeeeeeeeEEeEEEEeeEC
Q 038762 249 --KLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 249 --~ig~~~~~~~~ni~~~ni~i 268 (268)
+......+.++||+|+||+|
T Consensus 262 ~~~~~~~~~g~v~ni~f~nI~~ 283 (373)
T d1ogmx2 262 YASGMSPDSRKSISMTVSNVVC 283 (373)
T ss_dssp SSSSCCCEEEEEEEEEEEEEEE
T ss_pred eeeeccCCCeEEEeEEEEeEEE
Confidence 11234556788888888875
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=98.74 E-value=5e-08 Score=86.82 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEec------CceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK------SHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~------s~~~l~~~~ 74 (268)
..+.||+||+++++ |++|+|+||+|.-..+.++ ++++|..+.
T Consensus 5 ~~~tiq~Ai~~a~p---GDtI~l~~GtY~~~~i~~~~~Gt~~~pIti~a~~ 52 (481)
T d1ofla_ 5 SNETLYQVVKEVKP---GGLVQIADGTYKDVQLIVSNSGKSGLPITIKALN 52 (481)
T ss_dssp SHHHHHHHHHHCCT---TCEEEECSEEEETCEEEECCCCBTTBCEEEEESS
T ss_pred ChHHHHHHHHhCCC---CCEEEECCCEEEcCEEEeccCcccCCCEEEEeCC
Confidence 46899999999988 9999999999964445443 346666554
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Probab=98.58 E-value=3e-08 Score=84.92 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=73.8
Q ss_pred eccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEc-CCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC---
Q 038762 153 LGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYG-DFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY--- 227 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~-~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~--- 227 (268)
..++++++.+.+.... .|++++..|+||.|++++|+. +....+.|+|.+.+|++|.|++|.|.. .|.++.+...
T Consensus 86 ~~~~~i~i~G~~~~~~-~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~ 164 (353)
T d1o88a_ 86 EFTKGITIIGANGSSA-NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTT 164 (353)
T ss_dssp SBCSCEEEEECTTCCB-SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCS
T ss_pred ecCCCEEEEcCCCccc-cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCcccc
Confidence 4567788777666554 589999999999999999975 334567899999999999999999987 4444433221
Q ss_pred -------CCCeecEEEEceEEecCCccEEeee
Q 038762 228 -------TGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 228 -------~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
...+.+|++.+|+|.+...+.-+|+
T Consensus 165 ~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~ 196 (353)
T d1o88a_ 165 FESAVDIKGASNTVTVSYNYIHGVKKVGLDGS 196 (353)
T ss_dssp SCCSEEEESSCCEEEEESCEEEEEEECCEESS
T ss_pred ceeeEEeccCcccEEEECcccccccccceeCC
Confidence 1367889999999987555555665
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=98.38 E-value=3.4e-06 Score=72.07 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=33.6
Q ss_pred CCCceeEEeeecccc-CCCCchhHH--HHHHHHHhCCCCCCCcEEEECCCeEE
Q 038762 9 TTHIHIHSVIDFGAK-GDGIHYDTA--AIQSAIDACPPGNKPCQVRFPPGEYL 58 (268)
Q Consensus 9 ~~~~~~~~v~dyga~-~dg~~d~t~--aiq~Ai~~~~~~~~g~~v~ip~G~Y~ 58 (268)
...++++.|..=|.. +||. ...+ -||+||+++++ |.+|+|.||+|.
T Consensus 11 ~~~~~~~YVs~~Gsd~~~Gs-~~~p~~tIq~Ai~~a~~---GDtI~v~~GtY~ 59 (400)
T d1ru4a_ 11 ISTKRIYYVAPNGNSSNNGS-SFNAPMSFSAAMAAVNP---GELILLKPGTYT 59 (400)
T ss_dssp CCCSCEEEECTTCCTTCCSS-STTSCBCHHHHHHHCCT---TCEEEECSEEEE
T ss_pred cccCCeEEECCCCcCCCCCC-ccccHHHHHHHHHhCCC---cCEEEEcCceee
Confidence 466788888755432 3443 3333 39999999987 899999999995
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=98.21 E-value=6.3e-05 Score=63.80 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=55.7
Q ss_pred eccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCcee-eec-CcccEEEEeeEEecCCceeee
Q 038762 153 LGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI-DIE-DSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi-~~~-~~~~v~I~n~~i~~gDD~i~i 224 (268)
..++||.|+|++|++.. ..+|.+..++||.|++|++.. ...|++ +.. .+.+|+|++|.|...+....+
T Consensus 130 ~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~----~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~ 205 (359)
T d1qcxa_ 130 SGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTAR----IGRQHIVLGTSADNRVTISYSLIDGRSDYSAT 205 (359)
T ss_dssp TTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEE----ESSCSEEECSSCCEEEEEESCEEECBCSSBTT
T ss_pred eCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeeccc----cCCCceEeeccCCCceEeeccEeccCcccccc
Confidence 45666666666665421 235666666666666666653 122333 222 334566666666443222111
Q ss_pred cCC--------C-----------------------CCeecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEee
Q 038762 225 KTY--------T-----------------------GPLYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 225 ~s~--------~-----------------------~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~ni 266 (268)
..+ . +.-..++|.||++.+. .+++..+......+|+..|+++
T Consensus 206 ~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~ 279 (359)
T d1qcxa_ 206 CNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDV 279 (359)
T ss_dssp SSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEE
T ss_pred ccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCcCCEEEecCCceEEEEEeeEEECC
Confidence 100 0 1123466677776642 2345545555556777777764
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=98.20 E-value=3.2e-05 Score=65.74 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=32.8
Q ss_pred eccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCcee-e-ecCcccEEEEeeEEec
Q 038762 153 LGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI-D-IEDSNNTVITRVQIDT 217 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi-~-~~~~~~v~I~n~~i~~ 217 (268)
..++||.|+|++|++.. ..+|.+..+++|.|++|++... ..+.+ + ...+.+|+|++|.|..
T Consensus 130 ~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~~----~d~~~~~~~~~s~~vTis~~~~~~ 198 (359)
T d1idka_ 130 SGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARI----GRQHYVLGTSADNRVSLTNNYIDG 198 (359)
T ss_dssp TTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEE----SSCSEEECCCTTCEEEEESCEEEC
T ss_pred ecCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeeccC----CCCceeeeccCCCceeeeceeeec
Confidence 34566666666665421 2456666666666666666531 11112 1 1244556666666643
|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Major pollen allergen Jun a 1 species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]
Probab=98.18 E-value=1e-05 Score=68.46 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=14.7
Q ss_pred EEEeccccEEEEeEEEeCC
Q 038762 150 VGFLGCRNVNVWNVRLREP 168 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~ 168 (268)
+.+..++||.|++++|++.
T Consensus 108 i~i~~~~NVIirnl~i~~~ 126 (346)
T d1pxza_ 108 LFMRKVSHVILHSLHIHGC 126 (346)
T ss_dssp EEEESCEEEEEESCEEECC
T ss_pred EEEecCCEEEEeceEEecC
Confidence 5667778888888888764
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=97.96 E-value=0.00033 Score=60.00 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeEE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEYL 58 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~ 58 (268)
-..+.|++||..... ....|++-.|++-
T Consensus 36 ~t~~el~~~l~~~~~--~~P~vI~~~gti~ 63 (399)
T d1bn8a_ 36 SNRNQLVSALGKETN--TTPKIIYIKGTID 63 (399)
T ss_dssp CSHHHHHHHHCCTTC--CSCEEEEECSEEE
T ss_pred CCHHHHHHHHhhccC--CCceEEEEccEEe
Confidence 346788888853222 1346777778773
|
| >d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.96 E-value=5.1e-05 Score=63.91 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEe-cCceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRL-KSHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l-~s~~~l~~~~ 74 (268)
+-..||+||++++.....-+|+|.||+|.-. +.+ +++++|.++.
T Consensus 17 ~f~TIq~AI~a~p~~~~~~vI~I~~G~Y~E~-V~I~k~~itl~G~~ 61 (342)
T d1qjva_ 17 TFKTIADAIASAPAGSTPFVILIKNGVYNER-LTITRNNLHLKGES 61 (342)
T ss_dssp CBSSHHHHHHTSCSSSSCEEEEECSEEECCC-EEECSTTEEEEESC
T ss_pred CchhHHHHHHhCccCCceEEEEEcCeEEEEE-EEEcCCCeEEEEcC
Confidence 5678999999998722223689999999533 444 4678888874
|
| >d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type C [TaxId: 556]
Probab=97.88 E-value=0.00014 Score=61.53 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=77.8
Q ss_pred ceEEEEeccccEEEEeEEEeCCC-----CcEEEEeeeecEEEEeEEEEcCCC--------CCCCce-eeec-CcccEEEE
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPA-----YWCLHIVRCDNTFIRDMSIYGDFN--------TPNNDG-IDIE-DSNNTVIT 211 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~-----~~~i~~~~~~nv~i~~~~i~~~~~--------~~~~DG-i~~~-~~~~v~I~ 211 (268)
+..|++.+|+||.|+|++|+..+ ..+|.+..|++|.|++|++....+ ...+|| +++. .+.+|+|+
T Consensus 102 ~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis 181 (353)
T d1o88a_ 102 NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVS 181 (353)
T ss_dssp SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEE
T ss_pred cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEE
Confidence 45789999999999999998654 348999999999999999975322 112344 3333 56789999
Q ss_pred eeEEecCCceeeecCCC-CCee----------------------cEEEEceEEec-CCccEEeeeeeeeeEEeEEEEee
Q 038762 212 RVQIDTGDDAICPKTYT-GPLY----------------------NLTATDSWIRT-KSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~~-~~~~----------------------nv~v~n~~~~~-~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
++.|.....+..+++.. .... .+.+.||++.+ ..+++..+......+|+.+|+++
T Consensus 182 ~n~~~~~~k~~l~g~~~~~~~~~vT~hhN~~~~~~~R~P~~~~g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~ 260 (353)
T d1o88a_ 182 YNYIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKA 260 (353)
T ss_dssp SCEEEEEEECCEESSSSSCCCCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEE
T ss_pred CcccccccccceeCCccCcCCceEEEEeeEEcCCccCCcceecceEEEEEEEEecccceEEecCCCceEEEEeeEEecc
Confidence 99997544333333321 1112 35555555543 23345554455566777777765
|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type E [TaxId: 556]
Probab=97.85 E-value=0.00011 Score=62.28 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=60.8
Q ss_pred EEEEeccccEEEEeEEEeCCC---------------CcEEEEeeeecEEEEeEEEEcCCCC------------CCCcee-
Q 038762 149 LVGFLGCRNVNVWNVRLREPA---------------YWCLHIVRCDNTFIRDMSIYGDFNT------------PNNDGI- 200 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~---------------~~~i~~~~~~nv~i~~~~i~~~~~~------------~~~DGi- 200 (268)
.|.+.+++||.|++++|+... ..++.+..+++|.|++|++....+. ...||.
T Consensus 97 gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~ 176 (355)
T d1pcla_ 97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL 176 (355)
T ss_pred EEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEecCCccEEEECcccccCccccccccccccccccccccee
Confidence 577888999999999997532 2467777888888888887632110 013443
Q ss_pred eec-CcccEEEEeeEEecCCceeeecCCC------CCeecEEEEceEEec
Q 038762 201 DIE-DSNNTVITRVQIDTGDDAICPKTYT------GPLYNLTATDSWIRT 243 (268)
Q Consensus 201 ~~~-~~~~v~I~n~~i~~gDD~i~i~s~~------~~~~nv~v~n~~~~~ 243 (268)
++. .+.+|+|++|.|...+-+.-++... ....+|++-+|.+..
T Consensus 177 d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~ 226 (355)
T d1pcla_ 177 DIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDR 226 (355)
T ss_pred eeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccC
Confidence 333 4568888888886644333333321 245678888887764
|
| >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin methylesterase domain: Pectin methylesterase PemA species: Carrot (Daucus carota) [TaxId: 4039]
Probab=97.79 E-value=0.00032 Score=58.13 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. |-..||+||++++. ... -+|+|.||+|. +.+.++ .+++|.+++
T Consensus 14 dGsG-df~TIq~AIda~p~-~~~~~~~I~I~~G~Y~-E~V~I~~~k~~itl~G~g 65 (319)
T d1gq8a_ 14 DGSG-DYKTVSEAVAAAPE-DSKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDG 65 (319)
T ss_dssp TSCS-SBSSHHHHHHHSCS-SCSSCEEEEECSEEEE-CCEEECTTCCSEEEEESC
T ss_pred CCCC-CccCHHHHHhhCcc-CCCCcEEEEEcCceEE-EEEEECCCCCeEEEEEcC
Confidence 4544 45689999999987 221 26899999995 455553 468888774
|
| >d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Major pollen allergen Jun a 1 species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]
Probab=97.78 E-value=0.00024 Score=59.82 Aligned_cols=204 Identities=11% Similarity=0.021 Sum_probs=112.5
Q ss_pred HHHHHHHhCCCCCCCcEEEECC-CeEEE-eeEEecCceEEEEcC-CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEe
Q 038762 33 AIQSAIDACPPGNKPCQVRFPP-GEYLT-ATIRLKSHVTLNIHE-DATLLGGPRIEDYPEESSRWYVVLAENATDVGITG 109 (268)
Q Consensus 33 aiq~Ai~~~~~~~~g~~v~ip~-G~Y~~-~~l~l~s~~~l~~~~-ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G 109 (268)
.|+.|+++- ++.+|+|-. |+..+ .+|.+.|++||.+.. .+.+.... ..+.....+||.|+.
T Consensus 57 sLr~a~~~~----~pr~IvF~vsg~I~l~~~L~v~sn~TI~G~ga~~~i~~~G------------~~i~i~~~~NVIirn 120 (346)
T d1pxza_ 57 TLRYGATRE----KALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGG------------PCLFMRKVSHVILHS 120 (346)
T ss_dssp SHHHHHHCS----SCEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTS------------CCEEEESCEEEEEES
T ss_pred cHHHHhhCC----CCeEEEEeccEEEeccceEEeCCCceEEccCCCceEeeec------------ceEEEecCCEEEEec
Confidence 488888863 245677764 56533 467888888887652 12222211 112345666777766
Q ss_pred ccEEecCCcc--cccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEe-eeecEEEEeE
Q 038762 110 GGVVDGQAMK--FVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIV-RCDNTFIRDM 186 (268)
Q Consensus 110 ~G~i~g~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~-~~~nv~i~~~ 186 (268)
-+|..-... .+.......+....+ ....-++.+..++|+.|+++++....--.+.+. .+++|||+++
T Consensus 121 -l~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~gDai~i~~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis~~ 190 (346)
T d1pxza_ 121 -LHIHGCNTSVLGDVLVSESIGVEPVH---------AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNN 190 (346)
T ss_dssp -CEEECCCCCCSEEEEEETTTEEEEEC---------CCCCCSEEEESCEEEEEESCEEECCSSEEEEEESSCEEEEEESC
T ss_pred -eEEecCcccCCcccccccccCccccc---------cCCCceeeeecCceEEEECcEeeccccCceeEecCCEEEEEEee
Confidence 233211110 000000000000000 112347889999999999999998766566654 5899999999
Q ss_pred EEEcCCCC---CCCceeeecCcccEEEEeeEEecC-CceeeecCCCCCeecEEEEceEEecC-CccEEeeeeeeeeEEeE
Q 038762 187 SIYGDFNT---PNNDGIDIEDSNNTVITRVQIDTG-DDAICPKTYTGPLYNLTATDSWIRTK-SSAIKLGSASWFDFKAL 261 (268)
Q Consensus 187 ~i~~~~~~---~~~DGi~~~~~~~v~I~n~~i~~g-DD~i~i~s~~~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni 261 (268)
.+...... ...|.-...+..+|++.++.|... +-.-.+.. -..++|.||++.+. .+++..+......+|+.
T Consensus 191 ~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r----~g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N 266 (346)
T d1pxza_ 191 HFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRAR----YGLVHVANNNYDPWNIYAIGGSSNPTILSEGN 266 (346)
T ss_dssp EEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEE----SSEEEEESCEECCCSSCSEEEESCCEEEEESC
T ss_pred EEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccc----cceEEEECcEeecCccEEEeccCceEEEEEee
Confidence 99742110 011111111234688988887432 11111111 24678888888854 34677666666777887
Q ss_pred EEEee
Q 038762 262 VFDNI 266 (268)
Q Consensus 262 ~~~ni 266 (268)
+|++.
T Consensus 267 ~F~~~ 271 (346)
T d1pxza_ 267 SFTAP 271 (346)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77653
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=97.76 E-value=0.00014 Score=61.50 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=52.0
Q ss_pred eeeecEEEEeEEEEcCC--CCCCCceeeecCcccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecC
Q 038762 176 VRCDNTFIRDMSIYGDF--NTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 176 ~~~~nv~i~~~~i~~~~--~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
..++||.|+|++|+... .....|+|.+.++++|.|++|.|.. +||++.... ..+.+|+|.+|.|.+.
T Consensus 130 ~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~~~d~~~~~~~--~~s~~vTvs~~~f~~~ 199 (359)
T d1qcxa_ 130 SGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGT--SADNRVTISYSLIDGR 199 (359)
T ss_dssp TTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEESSCSEEECS--SCCEEEEEESCEEECB
T ss_pred eCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeeccccCCCceEeec--cCCCceEeeccEeccC
Confidence 56899999999997522 2245799999999999999999976 788875432 2467899999999753
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=97.75 E-value=8.1e-05 Score=63.16 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=76.9
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcE--EEEeeeecEEEEeEEEEcCC-CCCCCceee-----ec-CcccEEEEeeEEec-
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWC--LHIVRCDNTFIRDMSIYGDF-NTPNNDGID-----IE-DSNNTVITRVQIDT- 217 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~--i~~~~~~nv~i~~~~i~~~~-~~~~~DGi~-----~~-~~~~v~I~n~~i~~- 217 (268)
.+|.+..++||.|++++|.....-. .....+++++|+++.+.... .+...+|.+ .. +..+|++.++.|.+
T Consensus 154 DaI~i~~s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~ 233 (359)
T d1idka_ 154 DAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHT 233 (359)
T ss_dssp CSEEECSCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESB
T ss_pred CeEEeeCCccEEEEeeeeccCCCCceeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccC
Confidence 5788899999999999997643222 33467788999999996432 122223332 22 34579999999976
Q ss_pred CCceeeecCCCCCeecEEEEceEEecC-CccEEeeeeeeeeEEeEEEEeeE
Q 038762 218 GDDAICPKTYTGPLYNLTATDSWIRTK-SSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 218 gDD~i~i~s~~~~~~nv~v~n~~~~~~-~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
.+-.-.+.. ...++|.||++.+. .+++..+......+|+.+|+|+.
T Consensus 234 ~~R~P~~r~----g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~ 280 (359)
T d1idka_ 234 SGRSPKVQD----NTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVD 280 (359)
T ss_dssp CSCTTEECT----TCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEE
T ss_pred CCCCceecc----cceEEEECcEEECccceEEecCCceeEEEeceEEeCCc
Confidence 333333433 23578899988753 34566666667788888888764
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=97.54 E-value=0.0026 Score=53.59 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=19.1
Q ss_pred EEEEceEEecCC--------ccEEeeeeeeeeEEeEEEEee
Q 038762 234 LTATDSWIRTKS--------SAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 234 v~v~n~~~~~~~--------~gi~ig~~~~~~~~ni~~~ni 266 (268)
+++-||++.+.. +++..+.....-+|+.+|++.
T Consensus 250 ~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~ 290 (361)
T d1pe9a_ 250 IHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA 290 (361)
T ss_dssp EEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEE
T ss_pred EEEECceeecCcCccccccceeeecCCCCEEEEEceEEECC
Confidence 556677766421 345555555566677777654
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=97.46 E-value=0.00022 Score=61.14 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=58.1
Q ss_pred ceEEEEeccccEEEEeEEEeCCC-------------------CcEEEEeeeecEEEEeEEEEcCCC------------CC
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPA-------------------YWCLHIVRCDNTFIRDMSIYGDFN------------TP 195 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~-------------------~~~i~~~~~~nv~i~~~~i~~~~~------------~~ 195 (268)
..+|.+ +++||.|+|++|++.. +.+|.+..+++|.|++|++....+ ..
T Consensus 142 g~gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~ 220 (399)
T d1bn8a_ 142 GGNFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQ 220 (399)
T ss_dssp SCEEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECC
T ss_pred ccEEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEecCccEEEECceeccCCccccccccccccccc
Confidence 445666 6888888888887532 345777778888888888864211 00
Q ss_pred CCce-eeec-CcccEEEEeeEEecCCceeeecCCC-----CCeecEEEEceEEec
Q 038762 196 NNDG-IDIE-DSNNTVITRVQIDTGDDAICPKTYT-----GPLYNLTATDSWIRT 243 (268)
Q Consensus 196 ~~DG-i~~~-~~~~v~I~n~~i~~gDD~i~i~s~~-----~~~~nv~v~n~~~~~ 243 (268)
..|| +++. ++.+|+|++|.|...+-..-+++.. ....+|+|.+|.|..
T Consensus 221 ~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~ 275 (399)
T d1bn8a_ 221 HHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKN 275 (399)
T ss_dssp CCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEE
T ss_pred ccccceeecccceeEEeECccccCCcceeEecCCCCcccccCCceEEEEeeEecC
Confidence 1233 3443 4567888888886544333344322 123467888887764
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=97.16 E-value=0.0009 Score=56.49 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=6.8
Q ss_pred cccEEEEeEEEeC
Q 038762 155 CRNVNVWNVRLRE 167 (268)
Q Consensus 155 ~~nv~I~~v~i~n 167 (268)
++||.|++++|++
T Consensus 113 ~~NVIiRnl~ir~ 125 (361)
T d1pe9a_ 113 TNNVIIRNVYIQT 125 (361)
T ss_dssp CEEEEEESCEEEC
T ss_pred cceEEEEeEEeec
Confidence 4455555555553
|
| >d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type E [TaxId: 556]
Probab=96.88 E-value=0.0099 Score=49.74 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=63.0
Q ss_pred ceEEEEeccccEEEEeEEEeCCCC-----------------cEEEE-eeeecEEEEeEEEEcCCCC-----CCCceeeec
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAY-----------------WCLHI-VRCDNTFIRDMSIYGDFNT-----PNNDGIDIE 203 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~-----------------~~i~~-~~~~nv~i~~~~i~~~~~~-----~~~DGi~~~ 203 (268)
..++.+.+++||.|++|++..... +.+.+ ..+++|||+++.+...... .......-.
T Consensus 133 ~D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~ 212 (355)
T d1pcla_ 133 WDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDS 212 (355)
T ss_pred CceEEecCCccEEEECcccccCcccccccccccccccccccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccC
Confidence 347889999999999999975321 11222 2467899999998653211 111111122
Q ss_pred CcccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecCCc--------cEEeeeeeeeeEEeEEEEe
Q 038762 204 DSNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTKSS--------AIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 204 ~~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~~~--------gi~ig~~~~~~~~ni~~~n 265 (268)
+..+|++.++.|.+ ..-.=.+.. -.+.+.||++.+... ++..+......+|+.+|++
T Consensus 213 ~~~~vT~hhNl~~~~~~R~P~~r~-----G~~hv~NN~~~n~~~~~~~~~~y~~~~~~~~~v~~e~NyF~~ 278 (355)
T d1pcla_ 213 GKLRVTFHNNVFDRVTERAPRVRF-----GSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTL 278 (355)
T ss_pred CcceEEEecccccCCcccCCcccc-----cEEEEECcEEECCCCcccccceeeeccCcCceEEEeCCEEEC
Confidence 34578888888865 222111221 136677777764321 2222333444566666654
|
| >d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus sp., strain ksmp15 [TaxId: 1409]
Probab=95.67 E-value=0.031 Score=42.06 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=44.8
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee-eec
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI-CPK 225 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i-~i~ 225 (268)
+++|.++ +..+|+|+.|-.....||+... +.+++|+.... -..|.+.+.++..+.|.+.-..+.+|=| ...
T Consensus 41 ~pvF~le--~GaTlkNviIG~~~adGIHc~G--~ctl~NV~wed----VcEDA~T~k~~gt~~I~gGgA~~A~DKV~Q~N 112 (197)
T d1ee6a_ 41 KPIFRLE--AGASLKNVVIGAPAADGVHCYG--DCTITNVIWED----VGEDALTLKSSGTVNISGGAAYKAYDKVFQIN 112 (197)
T ss_dssp CCSEEEC--TTEEEEEEEECSSCTTCEEEES--CEEEEEEEESS----CCSCSEEEEESEEEEEESCEEEEEEEEEEEEC
T ss_pred CcEEEEc--CCCEEEEEEEcCCCCceEEEeC--cEEEEEEEeee----cccccceecCCceEEEECCEecCCCccEEEEC
Confidence 4556555 5567777777544444565543 45666666654 4556666554445555555554433332 222
Q ss_pred CCCCCeecEEEEceEEe
Q 038762 226 TYTGPLYNLTATDSWIR 242 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~ 242 (268)
+ .-.+.|+|.+..
T Consensus 113 g----~gt~~I~nF~v~ 125 (197)
T d1ee6a_ 113 A----AGTINIRNFRAD 125 (197)
T ss_dssp S----SEEEEEESCEEE
T ss_pred C----CCcEEEeeEEEe
Confidence 2 335566666554
|
| >d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus sp., strain ksmp15 [TaxId: 1409]
Probab=88.69 E-value=3.5 Score=30.46 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
.+++|+.|-. +..||||..+ +-+|+|++++. +.|++.+++
T Consensus 50 aTlkNviIG~----~~adGIHc~G--~ctl~NV~wedVcEDA~T~k~ 90 (197)
T d1ee6a_ 50 ASLKNVVIGA----PAADGVHCYG--DCTITNVIWEDVGEDALTLKS 90 (197)
T ss_dssp EEEEEEEECS----SCTTCEEEES--CEEEEEEEESSCCSCSEEEEE
T ss_pred CEEEEEEEcC----CCCceEEEeC--cEEEEEEEeeecccccceecC
Confidence 4444444432 2445555432 34455555544 445554443
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=83.43 E-value=3.1 Score=34.89 Aligned_cols=93 Identities=8% Similarity=-0.010 Sum_probs=53.1
Q ss_pred EEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC------cee-
Q 038762 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD------DAI- 222 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD------D~i- 222 (268)
+....+.+.+|++-++.++.+ ++.+..+.+.+|++..+.........-||.+.+. +.+|+|+.|.... ...
T Consensus 221 ii~~~s~~n~I~nN~~~~~~g-gi~~~~g~~~~i~~N~~~~n~~~~~~gGi~v~~~-~~~I~nN~~~~~~~~~~~~~~~~ 298 (481)
T d1ofla_ 221 IITSKSQENVYYGNTYLNCQG-TMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGS-RHVIACNYFELSETIKSRGNAAL 298 (481)
T ss_dssp EEEEESBTCEEESCEEESCSS-EEEEEECSSCEEESCEEEECSSSSCBCCEEECSB-SCEEESCEEEESSBCGGGTSEEE
T ss_pred EEEecCCCcEEeeeEEecCcc-eEEEccccCcEEECCEEECCCCcCccceEEEEcC-CeEEECcEEECCCCccccccceE
Confidence 344445556666666666643 5666666677777776665433334456777663 5567777776411 111
Q ss_pred ee--cC---CCCCeecEEEEceEEecC
Q 038762 223 CP--KT---YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i--~s---~~~~~~nv~v~n~~~~~~ 244 (268)
.. ++ ....+.++.|.+++|.++
T Consensus 299 ~~~~~~~~~~~~~~~~~~i~~N~~~n~ 325 (481)
T d1ofla_ 299 YLNPGAMASEHALAFDMLIANNAFINV 325 (481)
T ss_dssp EECCBCTTSTTCCCBSEEEESCEEESC
T ss_pred EcCCCCcccccccccccEEECCEEECC
Confidence 11 11 112567888888888764
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.09 E-value=3.1 Score=33.42 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=44.2
Q ss_pred cccEEEEeEEEeCCCCcEEEEee-eecEEEEeEEEEcCCC------CCCCceeeecCcccEEEEeeEEec-CCceeeecC
Q 038762 155 CRNVNVWNVRLREPAYWCLHIVR-CDNTFIRDMSIYGDFN------TPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 155 ~~nv~I~~v~i~n~~~~~i~~~~-~~nv~i~~~~i~~~~~------~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
..+..|+++.+++....++.+.. .....+.++.+..... .....++....+.+..+++|.+.. .++++.+..
T Consensus 136 ~~~~~i~n~~i~~~~~~g~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~ 215 (400)
T d1ru4a_ 136 GSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFD 215 (400)
T ss_dssp SSSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTT
T ss_pred ccccccccceEecCCcceEEEeccccccEEEEeeEEeccccccccccceeeeEEecccccceeecceeeeccCcceeEEe
Confidence 34445555555544444444432 2234444444432211 012233444445567777777765 566666654
Q ss_pred CCCCeecEEEEceEEecC
Q 038762 227 YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~ 244 (268)
...++.++||++...
T Consensus 216 ---~~~~~~i~nn~~~~n 230 (400)
T d1ru4a_ 216 ---SPQKVVIENSWAFRN 230 (400)
T ss_dssp ---CCSCCEEESCEEEST
T ss_pred ---cCCCEEEECeEEEcc
Confidence 356677888877643
|