Citrus Sinensis ID: 038777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWGDLEEAEDEIEEELEDGIESVESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQEKEGKSKKNLKF
Secondary Structure (PSIPRED)
ccccHHHHHHHccccHHHHHHHcccccEEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHcccHHcccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHccccHHHHHHHcccccEEEEEEccccccHHHHEEHHcccccccccHHHHHHHHHHccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccEEEccccHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHEEEcccccccccccccccccccccccccccccccccEEEEEcHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEccc
Coil and Loop (DISEMBL)
kglskkrkkhgrrMRIAEVKrycsrpdvvevwdataadpKLLVFLKAYrntvpvprhwcqkrkflqgkrgigkqpfhlpdfiAATGIEKVRQACNEKEDSKKLKQKQSERMqprmkkmdidypALYDAFFkyqtkpkltthgdlyyegkEFEVKQLmemkpctlSYELRealgipdvasppylrnmqrygappsypnlkipgfnapipqeadkphvvdtepvdktrhwgdleEAEDEIEEELEDGIESVESQRKEPERTLYQVLEEKeeriaprtllVTTHTVkrvdllkgqqtdrvdailqpeelevmDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQEKegkskknlkf
Flexible Loop (DISEMBL)
kglskkrkkhgrrmriaevkrycsrpdvvEVWDATAADPKLLVFLKAYRntvpvprhwcQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQAcnekedskklkqkqsermqprmkkmDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWGDLEEAEDEIEEELEDGiesvesqrkeperTLYQvleekeeriaprtllvtthtvkrvdllkgqqtdrvDAILQPEELEVMDNVLPAKYEEAKqeeklhsqrqdfsgmvaenEKKRKrqmqekegkskknlkf
Low Complexity Region (SEG)
KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWgdleeaedeieeeledgieSVESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAenekkrkrqmqekeGKSKKNLKF
Disordered region (IsUnstruct)
***************IAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKV****************************DIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRN************************************************************************************RIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQ***********************************************************
Disordered Region (DISOPRED)
****************AEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQ***GIGKQPFHLPDFIAATGIEKV***************************MDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD*EPVDKTR*************************************************************************************************************************************KF
Disordered Region (DISEMBL)
*************MRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQA********************RMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWGDLEEA***********************RTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYE*************DFSGMVA***********************
Disordered Region (DISPRO)
**L*KKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTE*********D***********LEDGIESVESQRKEPERTLYQVLEEKE**************VKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKL******FSGMVAENE********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGxxxxxxxxxxxxxxxxxxxxxSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWGDLEEAxxxxxxxxxxxxxxxxxxxxxPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQEKEGKSKKNLKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9UUI3	601	Pre-mRNA-splicing factor	yes	no	0.545	0.327	0.570	3e-60
Q02554	436	Cold sensitive U2 snRNA s	yes	no	0.567	0.470	0.359	2e-34

>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 139/198 (70%), Gaps = 1/198 (0%)

Query: 14  MRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGK 73
           M +A++K    + DVVE WD ++ DP  L  LKAY NTVPVPRHW QKR +L G+RGI +
Sbjct: 187 MTVAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRGIER 246

Query: 74  QPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQ 133
           Q F LP +I ATGI ++R A +E E    L+QK  ER+QP+M K+DIDY  L+DAFF+YQ
Sbjct: 247 QLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQ 306

Query: 134 TKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPP 193
           TKP LT  G+ Y+EGKE E   + E +P  +S ELREALGI   A PP+L  MQRYG PP
Sbjct: 307 TKPVLTGFGECYFEGKELEA-DVKEKRPGDISEELREALGIAPGAPPPWLFAMQRYGPPP 365

Query: 194 SYPNLKIPGFNAPIPQEA 211
           SYP+LKIPG N PIP  A
Sbjct: 366 SYPDLKIPGVNCPIPTGA 383

Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 12/217 (5%)

Query: 3   LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
           LS ++++   +  ++++K     P ++E +D  A  P LL  +K  +N +PVP HW  K+
Sbjct: 121 LSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKK 180

Query: 63  KFLQGKRGIGKQPFHLPDFIAATGIEKVR----QACNEKEDSKKLKQKQSERMQPRMKKM 118
           ++L G+  +GK+PF LPD I  T IE++R    Q+  + +D K LK+    R+QP+M  +
Sbjct: 181 EYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGAL 240

Query: 119 DIDYPALYDAFFKYQTKPK---LTTHGDLYYEGK----EFEVKQLMEMK-PCTLSYELRE 170
           D+DY  L+D FFK     K   L   GD+YYE +    E   K++++ K P  +S ELR 
Sbjct: 241 DLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRA 300

Query: 171 ALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPI 207
            + +P+   PP+   M+  G P  YP+LKI G N  I
Sbjct: 301 IMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDI 337

Essential splicing protein required for U2 snRNP binding to pre-mRNA during spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
449470216	580	PREDICTED: splicing factor 3B subunit 2-	0.997	0.620	0.655	1e-142
356549367	575	PREDICTED: splicing factor 3B subunit 2-	0.994	0.624	0.645	1e-139
356555130	575	PREDICTED: splicing factor 3B subunit 2-	0.994	0.624	0.645	1e-139
255555981	590	Splicing factor 3B subunit, putative [Ri	0.994	0.608	0.656	1e-138
224113969	588	predicted protein [Populus trichocarpa]	0.994	0.610	0.641	1e-138
356546253	577	PREDICTED: splicing factor 3B subunit 2-	0.994	0.622	0.630	1e-137
224078924	585	predicted protein [Populus trichocarpa]	0.958	0.591	0.621	1e-133
115449955	582	Os02g0827300 [Oryza sativa Japonica Grou	0.991	0.615	0.601	1e-130
125541705	581	hypothetical protein OsI_09533 [Oryza sa	0.991	0.616	0.603	1e-130
357143664	576	PREDICTED: splicing factor 3B subunit 2-	0.950	0.595	0.616	1e-127

>gi|449470216|ref|XP_004152814.1| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus] gi|449515207|ref|XP_004164641.1| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/433 (65%), Positives = 319/433 (73%), Gaps = 73/433 (16%)

Query: 1   KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
           KGLS K+KK  RRM+IAE+K+ CSRPDVVE+WDATAADPKLLV+LK+YRNTVPVPRHWCQ
Sbjct: 149 KGLSNKKKKLQRRMKIAELKQICSRPDVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQ 208

Query: 61  KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
           KRKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDI
Sbjct: 209 KRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDI 268

Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
           DY  L+DAFFKYQTKPKLTT GDLYYEGKEFEVK L EMKP  LS EL+EALG+P+ A P
Sbjct: 269 DYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVK-LREMKPGMLSQELKEALGMPEGAPP 327

Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEAD---------KPHV--------------- 216
           P+L NMQRYG PPSYP+LKIPG NAPIP  A          KP V               
Sbjct: 328 PWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQ 387

Query: 217 ------VDTEPVDKTRHWGDL----------EEAEDEIEEELEDGIESVES--------- 251
                  + EPVDKT+HWGDL          E+ E+  EEE+EDGIESV+S         
Sbjct: 388 QQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGVE 447

Query: 252 ----------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VKRVDLL 289
                     QRKEP+R LYQVLEEKEER+AP TLL T+HT             KRVDLL
Sbjct: 448 TPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTSHTYVISGGTQDKTGAKRVDLL 507

Query: 290 KGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQ 349
           +GQ++D+VD  L+PEELE M+NVLPAKYEEA++EEKL SQR+DFS MVAENEKKRKR+MQ
Sbjct: 508 RGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQ 567

Query: 350 EKEGKS-KKNLKF 361
           EKEGKS KK+ KF
Sbjct: 568 EKEGKSKKKDFKF 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549367|ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/437 (64%), Positives = 320/437 (73%), Gaps = 78/437 (17%)

Query: 1   KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
           KG+S K+KK  RRM+IAE+K+ C RPDVVEVWDATA+DPKLLVFLK+YRNTVPVPRHWCQ
Sbjct: 141 KGISNKKKKLQRRMKIAELKQICLRPDVVEVWDATASDPKLLVFLKSYRNTVPVPRHWCQ 200

Query: 61  KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
           KRKFLQGKRGI K PF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDI
Sbjct: 201 KRKFLQGKRGIEKPPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDI 260

Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
           DY  L+DAFFKYQTKPKLT+ GDLY+EGKEFEVK L EMKP  LS+EL+EALG+P+ + P
Sbjct: 261 DYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFEVK-LREMKPGMLSHELKEALGMPEGSPP 319

Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIP-------------------------------Q 209
           P+L NMQRYG PPSYP+LKIPG NAPIP                               Q
Sbjct: 320 PWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQ 379

Query: 210 EADKPHVVDTEPVDKTRHWGDLEEAEDEIEEELED-------------GIESVES----- 251
           + D+P+  + EPVDKT+HWGDLEE E+E EEE E+             GI+SV+S     
Sbjct: 380 QQDQPNY-EEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTP 438

Query: 252 --------------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VKR 285
                         QRKEPER LYQVLEEKEE+IAP TLL TTHT             KR
Sbjct: 439 TGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKIAPGTLLGTTHTYVVGTGTQDKSGAKR 498

Query: 286 VDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRK 345
           VDLL+GQ+TD+VD  LQPEELE M+NVLPAKYEEA++EEKL SQR+DFS MVAENEKKRK
Sbjct: 499 VDLLRGQKTDKVDVTLQPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 558

Query: 346 RQMQEKEGKSKK-NLKF 361
           R+MQEKEGKSKK + KF
Sbjct: 559 RKMQEKEGKSKKRDFKF 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555130|ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/437 (64%), Positives = 319/437 (72%), Gaps = 78/437 (17%)

Query: 1   KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
           KG+S K+KK  RRM+IA++K+ CSRPDVVEVWDATA+DPKLLVFLK+YRNTVPVPRHWCQ
Sbjct: 141 KGISNKKKKLQRRMKIAQLKQICSRPDVVEVWDATASDPKLLVFLKSYRNTVPVPRHWCQ 200

Query: 61  KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
           KRKFLQGKRGI K  F LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDI
Sbjct: 201 KRKFLQGKRGIEKPAFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDI 260

Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
           DY  L+DAFFKYQTKPKLT+ GDLY+EGKEFEVK L EMKP  LS EL+EALG+P+ A P
Sbjct: 261 DYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFEVK-LREMKPGMLSQELKEALGMPEGAPP 319

Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIP-------------------------------Q 209
           P+L NMQRYG PPSYP+LKIPG NAPIP                               Q
Sbjct: 320 PWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQ 379

Query: 210 EADKPHVVDTEPVDKTRHWGDLEEAEDEIEEELED-------------GIESVES----- 251
           + D+P+  + EPVDKT+HWGDLEE E+E EEE E+             GI+SV+S     
Sbjct: 380 QQDQPNY-EEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTP 438

Query: 252 --------------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VKR 285
                         QRKEPER LYQVLEEKEE+IAP TLL TTHT             KR
Sbjct: 439 TGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKIAPGTLLGTTHTYVVGTGTQDKSGAKR 498

Query: 286 VDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRK 345
           VDLL+GQ+TD+VD  LQPEELE M+NVLPAKYEEA++EEKL SQR+DFS MVAENEKKRK
Sbjct: 499 VDLLRGQKTDKVDVTLQPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 558

Query: 346 RQMQEKEGKSKK-NLKF 361
           R+MQEKEGKSKK + KF
Sbjct: 559 RKMQEKEGKSKKRDFKF 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555981|ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinus communis] gi|223541688|gb|EEF43236.1| Splicing factor 3B subunit, putative [Ricinus communis]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/431 (65%), Positives = 313/431 (72%), Gaps = 72/431 (16%)

Query: 2   GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
           G+S K+KK  RRM+IAE+K+ CSRPDVVEVWDATAADPKLLVFLK+YRNTVPVPRHWCQK
Sbjct: 161 GISNKKKKLLRRMKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQK 220

Query: 62  RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
           RKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDID
Sbjct: 221 RKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDID 280

Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
           Y  L+DAFFKYQTKPKLTTHGDLY+EGKEFEVK L EMKP TLS EL+E+LG+P+ A PP
Sbjct: 281 YQVLHDAFFKYQTKPKLTTHGDLYHEGKEFEVK-LREMKPGTLSQELKESLGMPEGAPPP 339

Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIPQEAD---------KPHV---------------- 216
           +L NMQRYG PPSYP+LKIPG NAPIP  A          KP V                
Sbjct: 340 WLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVYQ 399

Query: 217 -----VDTEPVDKTRHWGDL---------EEAEDEIEEELEDGIESVES----------- 251
                 + EPVDK +HWGDL         EE E+  EE+LEDGI+SV+S           
Sbjct: 400 QEQPNYEEEPVDKNKHWGDLEEEEEEEEEEEEEEIEEEDLEDGIQSVDSLSSTPTGVETP 459

Query: 252 --------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VKRVDLLKG 291
                   QRKEPER LYQVLEEK E I   TLL TTHT             KRVDLL+G
Sbjct: 460 DVIDLRKQQRKEPERPLYQVLEEKPEAIGAGTLLGTTHTYVVGTGTQDKSAAKRVDLLRG 519

Query: 292 QQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQEK 351
           Q+TDRVD  LQPEEL+ MD VLP KYEEA++EEKL SQR+DFS MVAENEKKRKR+MQEK
Sbjct: 520 QKTDRVDVTLQPEELDAMDEVLPGKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEK 579

Query: 352 EGKS-KKNLKF 361
           EGKS KK+ KF
Sbjct: 580 EGKSKKKDFKF 590

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113969|ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|222859695|gb|EEE97242.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/438 (64%), Positives = 317/438 (72%), Gaps = 79/438 (18%)

Query: 1   KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
           KG+S K+KK  RRM+IA++K+ CSRPDVVEVWDAT+ADPKLLVFLK+YRNTVPVPRHWCQ
Sbjct: 153 KGVSNKKKKLQRRMKIADLKQICSRPDVVEVWDATSADPKLLVFLKSYRNTVPVPRHWCQ 212

Query: 61  KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
           KRKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKED KKLKQKQ ERMQP+M KMDI
Sbjct: 213 KRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDGKKLKQKQRERMQPKMGKMDI 272

Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
           DY  L+DAFFKYQTKPKLT HGDLY+EGKEFEVK L EMKP +LS EL+EALG+P+ A P
Sbjct: 273 DYQVLHDAFFKYQTKPKLTMHGDLYHEGKEFEVK-LREMKPGSLSQELKEALGMPEGAPP 331

Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEA----------------------------- 211
           P+L NMQRYG PPSYP+LKIPG NAPIP  A                             
Sbjct: 332 PWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHAGGWGKPPVDEYGRPLYGDVFGVQ 391

Query: 212 --DKPHVVDTEPVDKTRHWG--------------DLEEAEDEIEEELEDGIESVES---- 251
             D+P+  + EPVDKT+HWG              + EE E   EEELEDG++SV+S    
Sbjct: 392 IQDQPN-YEEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEQLDEEELEDGVQSVDSLSST 450

Query: 252 ---------------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VK 284
                          QRKEPER LYQVLEEK+ERIA  TLL TTHT             K
Sbjct: 451 PTGVETPDVIDLRKQQRKEPERPLYQVLEEKQERIAAGTLLGTTHTYVVNTGSQDKTAAK 510

Query: 285 RVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKR 344
           RVDLL+GQ+TDRVD  L PEELEVMDNVLP+KYEEA++EEKL SQR+DFS MVAENEKKR
Sbjct: 511 RVDLLRGQKTDRVDVTLLPEELEVMDNVLPSKYEEAREEEKLRSQREDFSDMVAENEKKR 570

Query: 345 KRQMQEKEGKS-KKNLKF 361
           KR+MQEK+GKS KK+ KF
Sbjct: 571 KRKMQEKDGKSKKKDFKF 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546253|ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 275/436 (63%), Positives = 319/436 (73%), Gaps = 77/436 (17%)

Query: 1   KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
           KG+S K+KK  RRM+IAE+K+ CSRPDVVEVWDATA+DPKLLVFLK+YRNTVPVPRHWCQ
Sbjct: 142 KGISNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKSYRNTVPVPRHWCQ 201

Query: 61  KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
           KRKFLQGKRGI K PF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDI
Sbjct: 202 KRKFLQGKRGIEKLPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDI 261

Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
           DY  L+DAFFKYQTKPKLT+ G+LY+EGKEFEVK L EMKP  LS+EL+EALG+P+ A P
Sbjct: 262 DYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVK-LREMKPGMLSHELKEALGMPEGAPP 320

Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEA----------------------------- 211
           P+L NMQRYG PPSYP+LKIPG NAPIP  A                             
Sbjct: 321 PWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVH 380

Query: 212 --DKPHVVDTEPVDKTRHWGDLEEAEDEIEEELED-------------GIESVES----- 251
             D+P+  + EPVDKT+HWGDLEE E+E EEE E+             GI+SV+S     
Sbjct: 381 QQDQPNY-EEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEAGIQSVDSLSSTP 439

Query: 252 --------------QRKEPERTLYQVLEEKEERIAPRTLLVTTHT------------VKR 285
                         QRKEPE+ LYQVLEEKEE+IAP TLL TTHT             KR
Sbjct: 440 TGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKIAPGTLLGTTHTYVVNTGTQDKSGAKR 499

Query: 286 VDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRK 345
           VDLL+GQ++D+VD  L PEEL+ M+NVLPAKYEEA++EEKL +QR+DFS MVAENEK++K
Sbjct: 500 VDLLRGQKSDKVDVTLLPEELDAMENVLPAKYEEAREEEKLRNQREDFSDMVAENEKRKK 559

Query: 346 RQMQEKEGKSKKNLKF 361
           R+MQEKEGKSK+N +F
Sbjct: 560 RKMQEKEGKSKRNKEF 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078924|ref|XP_002305682.1| predicted protein [Populus trichocarpa] gi|222848646|gb|EEE86193.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/425 (62%), Positives = 300/425 (70%), Gaps = 79/425 (18%)

Query: 2   GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
           G+S K+KK  RRM+IA +K+ CSRPDVVEVWDAT+ADPKLLVFLK+YRNTVPVPRHWCQK
Sbjct: 150 GVSNKKKKLQRRMKIANLKQICSRPDVVEVWDATSADPKLLVFLKSYRNTVPVPRHWCQK 209

Query: 62  RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
           RKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDID
Sbjct: 210 RKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDID 269

Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
           Y  L+DAFFKYQTKPKLTT GDLY+EGKEFEVK L EMKP +LS EL+E+LG+P+ A PP
Sbjct: 270 YQVLHDAFFKYQTKPKLTTLGDLYHEGKEFEVK-LREMKPGSLSQELKESLGMPEGAPPP 328

Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIPQEA------------------------------ 211
           +L NMQRYG PPSYP+LKIPG NAPIP  A                              
Sbjct: 329 WLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHAGGWGKPPVDEYGRPLYGDVFGVQI 388

Query: 212 -DKPHVVDTEPVDKTRHWGDLE-----------------------------EAEDEIEE- 240
            D+P+  + EPVDKT+HWGDLE                             ++ D +   
Sbjct: 389 QDQPN-YEEEPVDKTKHWGDLEEEEEEEEEEEDEEEEEEEQLDEEELEDGAQSVDSLSST 447

Query: 241 ----ELEDGIESVESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTV------------K 284
               E  D I+  + QRKEPER LYQVLEEK+E+IA  TLL TTHT             K
Sbjct: 448 PTGVETPDVIDLRKQQRKEPERPLYQVLEEKQEKIAAGTLLGTTHTYVVNTGTQDKAAGK 507

Query: 285 RVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKR 344
           RVDLL+GQ+TDRVD  L PEELEVMDNVLP+KYEEA++EEKL SQR+DFS MVAENEKKR
Sbjct: 508 RVDLLRGQKTDRVDVTLLPEELEVMDNVLPSKYEEAREEEKLRSQREDFSDMVAENEKKR 567

Query: 345 KRQMQ 349
           KR+MQ
Sbjct: 568 KRKMQ 572

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449955|ref|NP_001048592.1| Os02g0827300 [Oryza sativa Japonica Group] gi|48716448|dbj|BAD23055.1| putative splicing factor 3B subunit 2 [Oryza sativa Japonica Group] gi|113538123|dbj|BAF10506.1| Os02g0827300 [Oryza sativa Japonica Group] gi|125584232|gb|EAZ25163.1| hypothetical protein OsJ_08964 [Oryza sativa Japonica Group]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/437 (60%), Positives = 304/437 (69%), Gaps = 79/437 (18%)

Query: 2   GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
           GLS K+KK  RRM+IAE+K+ C+RPDVVEVWDATA+DP LLV+LK+YRNTVPVPRHWCQK
Sbjct: 148 GLSNKQKKLQRRMKIAELKQICNRPDVVEVWDATASDPSLLVYLKSYRNTVPVPRHWCQK 207

Query: 62  RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
           RKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDID
Sbjct: 208 RKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDID 267

Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
           Y  L+DAFFKYQTKPKLT+HGDLYYEGKEFEVK L EMKP  LS EL+EALG+PD A PP
Sbjct: 268 YQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVK-LREMKPGMLSRELKEALGMPDGAPPP 326

Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIPQEAD---------KPHV---------------- 216
           +L NMQRYG PPSYP LKIPG NAPIP  A          KP V                
Sbjct: 327 WLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVLQ 386

Query: 217 -----VDTEPVDKTRHWGDLE---------------------------EAEDEIEE---- 240
                 D EPVD+++HWGDLE                           ++ D I      
Sbjct: 387 QDEPNYDEEPVDRSKHWGDLEEEEEEEEEEEEEEEEEPMEDEDMEDGMQSVDTISSTPTG 446

Query: 241 -ELEDGIESVESQRKEPERT----LYQVLEEKEERIAPRTLLVTTHTV----------KR 285
            E  D I+  + QRKEPE+     LYQ+LE+KEERIAP  +  ++HT           KR
Sbjct: 447 VETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGSSHTYAIGAQDKAGPKR 506

Query: 286 VDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRK 345
           VDLLK Q++D+VD  +QPEELEVMD+VL AKYEEA++EEKL +Q++DFS MVAEN  KRK
Sbjct: 507 VDLLKNQKSDKVDVTIQPEELEVMDDVLAAKYEEAREEEKLRNQKEDFSDMVAENASKRK 566

Query: 346 RQMQEKEGKS-KKNLKF 361
           R+ QEK+GKS KK+ KF
Sbjct: 567 RK-QEKDGKSKKKDFKF 582

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125541705|gb|EAY88100.1| hypothetical protein OsI_09533 [Oryza sativa Indica Group]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/436 (60%), Positives = 304/436 (69%), Gaps = 78/436 (17%)

Query: 2   GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
           GLS K+KK  RRM+IAE+K+ C+RPDVVEVWDATA+DP LLV+LK+YRNTVPVPRHWCQK
Sbjct: 148 GLSNKQKKLQRRMKIAELKQICNRPDVVEVWDATASDPSLLVYLKSYRNTVPVPRHWCQK 207

Query: 62  RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
           RKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDID
Sbjct: 208 RKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDID 267

Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
           Y  L+DAFFKYQTKPKLT+HGDLYYEGKEFEVK L EMKP  LS EL+EALG+PD A PP
Sbjct: 268 YQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVK-LREMKPGMLSRELKEALGMPDGAPPP 326

Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIPQEAD---------KPHV---------------- 216
           +L NMQRYG PPSYP LKIPG NAPIP  A          KP V                
Sbjct: 327 WLINMQRYGPPPSYPQLKIPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPLYGDVFGVLQ 386

Query: 217 -----VDTEPVDKTRHWGDLE--------------------------EAEDEIEE----- 240
                 D EPVD+++HWGDLE                          ++ D I       
Sbjct: 387 QDEPNYDEEPVDRSKHWGDLEEEEEEEEEEEEEEEEPMEDEDMEDGMQSVDTISSTPTGV 446

Query: 241 ELEDGIESVESQRKEPERT----LYQVLEEKEERIAPRTLLVTTHTV----------KRV 286
           E  D I+  + QRKEPE+     LYQ+LE+KEERIAP  +  ++HT           KRV
Sbjct: 447 ETPDVIDLRKLQRKEPEKQTEKQLYQILEQKEERIAPGAIYGSSHTYAIGAQDKAGPKRV 506

Query: 287 DLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKR 346
           DLLK Q++D+VD  +QPEELEVMD+VL AKYEEA++EEKL +Q++DFS MVAEN  KRKR
Sbjct: 507 DLLKNQKSDKVDVTIQPEELEVMDDVLAAKYEEAREEEKLRNQKEDFSDMVAENASKRKR 566

Query: 347 QMQEKEGKS-KKNLKF 361
           + QEK+GKS KK+ KF
Sbjct: 567 K-QEKDGKSKKKDFKF 581

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357143664|ref|XP_003573003.1| PREDICTED: splicing factor 3B subunit 2-like, partial [Brachypodium distachyon]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/422 (61%), Positives = 302/422 (71%), Gaps = 79/422 (18%)

Query: 2   GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
           GLS K+KK  +RM+IAE+K+ C+RPDVVEVWDATA+DPKLLV+LK+YRNTVPVPRHW QK
Sbjct: 142 GLSNKKKKLEQRMKIAELKQICNRPDVVEVWDATASDPKLLVYLKSYRNTVPVPRHWSQK 201

Query: 62  RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
           RKFLQGKRGI KQPF LPDFIAATGIEK+RQA  EKEDSKKLKQKQ ERMQP+M KMDID
Sbjct: 202 RKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDID 261

Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
           Y  L+DAFFKYQTKPKLT+HGDLYYEGKEFEVK L EMKP  LS EL+EALG+PD A PP
Sbjct: 262 YQVLHDAFFKYQTKPKLTSHGDLYYEGKEFEVK-LREMKPGMLSRELKEALGMPDGAPPP 320

Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIP-------------------------------QE 210
           +L NMQRYG PPSYP+LKIPG NAPIP                               Q+
Sbjct: 321 WLINMQRYGPPPSYPSLKIPGLNAPIPPGASFGYRPGEWGKPPVDELGRPLYGDVFGIQQ 380

Query: 211 ADKPHVVDTEPVDKTRHWGDLEEAEDEIEEELED-------------GIESVES------ 251
            D+P+  D EPVD+++HWGDLEE E+E EEE E+             GI+SV++      
Sbjct: 381 QDEPN-YDEEPVDRSKHWGDLEEEEEEEEEEEEEEEDDLMEEEDMEAGIQSVDTISSTPT 439

Query: 252 -------------QRKEP----ERTLYQVLEEKEERIAPRTLLVTTHT----------VK 284
                        QRKEP    E+ LYQVLE+KEERIAP TL  ++HT          VK
Sbjct: 440 GVETPDVIDLRKLQRKEPEKQTEKQLYQVLEQKEERIAPGTLYGSSHTYVVGAPDKAGVK 499

Query: 285 RVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKR 344
           RVDLLK Q++D+VD  + PEELEVMD+VL AKYEEA++EEKL +Q++DFS MVAEN  KR
Sbjct: 500 RVDLLKNQKSDKVDVTIHPEELEVMDDVLAAKYEEAREEEKLRNQKEDFSDMVAENASKR 559

Query: 345 KR 346
           KR
Sbjct: 560 KR 561

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
FB|FBgn0031493	749	CG3605 [Drosophila melanogaste	0.567	0.273	0.635	1.2e-77
UNIPROTKB|F1MC31	896	SF3B2 "Uncharacterized protein	0.614	0.247	0.593	3.6e-76
UNIPROTKB|E2RL65	895	SF3B2 "Uncharacterized protein	0.614	0.248	0.593	3.6e-76
UNIPROTKB|E9PPJ0	878	SF3B2 "Splicing factor 3B subu	0.614	0.252	0.593	3.6e-76
UNIPROTKB|Q13435	895	SF3B2 "Splicing factor 3B subu	0.614	0.248	0.593	3.6e-76
UNIPROTKB|F1RU38	879	SF3B2 "Uncharacterized protein	0.614	0.252	0.593	3.6e-76
ZFIN|ZDB-GENE-070928-1	826	sf3b2 "splicing factor 3b, sub	0.570	0.249	0.632	1.6e-75
DICTYBASE|DDB_G0284555	625	sf3b2 "splicing factor 3B subu	0.581	0.336	0.582	5.3e-69
WB|WBGene00021004	602	W03F9.10 [Caenorhabditis elega	0.570	0.342	0.537	1.1e-62
UNIPROTKB|O16997	602	W03F9.10 "Protein W03F9.10" [C	0.570	0.342	0.537	1.1e-62

FB|FBgn0031493 CG3605 [Drosophila melanogaster (taxid:7227)]

 Score = 673 (242.0 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
 Identities = 134/211 (63%), Positives = 159/211 (75%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSK++ K   R+ +AE+K+  SRPDVVE+ D TA DPKLLV LKAYRNTV VPRHWC KR
Sbjct:   299 LSKRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQVPRHWCFKR 358

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LP FI  TGI ++R++  E+ED+K LK K  ER++P+M K+DIDY
Sbjct:   359 KYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLKAKMRERVRPKMGKIDIDY 418

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKP++T HGDLYYEGKEFE + L E KP  LS ELR ALG+P       
Sbjct:   419 QKLHDAFFKWQTKPRMTIHGDLYYEGKEFETR-LKEKKPGDLSEELRIALGMPVGPNSHK 477

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIP 208
               PP+L   QRYG PPSYPNLKIPG NAPIP
Sbjct:   478 IPPPWLIAQQRYGPPPSYPNLKIPGLNAPIP 508

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|F1MC31 SF3B2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 137/231 (59%), Positives = 167/231 (72%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R  +AE+K+  +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct:   450 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 509

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LPDFI  TGI+++R+A  EKE+ K +K K  E+++P+M K+DIDY
Sbjct:   510 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 569

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP  LS ELR +LG+P       
Sbjct:   570 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 628

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
               PP+L  MQRYG PPSYPNLKIPG N+PIP+     +        PVD+T
Sbjct:   629 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 679

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RL65 SF3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 137/231 (59%), Positives = 167/231 (72%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R  +AE+K+  +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct:   449 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 508

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LPDFI  TGI+++R+A  EKE+ K +K K  E+++P+M K+DIDY
Sbjct:   509 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 568

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP  LS ELR +LG+P       
Sbjct:   569 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 627

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
               PP+L  MQRYG PPSYPNLKIPG N+PIP+     +        PVD+T
Sbjct:   628 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 678

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PPJ0 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]

 Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 137/231 (59%), Positives = 167/231 (72%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R  +AE+K+  +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct:   432 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 491

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LPDFI  TGI+++R+A  EKE+ K +K K  E+++P+M K+DIDY
Sbjct:   492 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 551

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP  LS ELR +LG+P       
Sbjct:   552 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 610

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
               PP+L  MQRYG PPSYPNLKIPG N+PIP+     +        PVD+T
Sbjct:   611 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 661

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q13435 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]

 Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 137/231 (59%), Positives = 167/231 (72%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R  +AE+K+  +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct:   449 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 508

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LPDFI  TGI+++R+A  EKE+ K +K K  E+++P+M K+DIDY
Sbjct:   509 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 568

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP  LS ELR +LG+P       
Sbjct:   569 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 627

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
               PP+L  MQRYG PPSYPNLKIPG N+PIP+     +        PVD+T
Sbjct:   628 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 678

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RU38 SF3B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 137/231 (59%), Positives = 167/231 (72%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R  +AE+K+  +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct:   433 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 492

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LPDFI  TGI+++R+A  EKE+ K +K K  E+++P+M K+DIDY
Sbjct:   493 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 552

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
               L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP  LS ELR +LG+P       
Sbjct:   553 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 611

Query:   178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
               PP+L  MQRYG PPSYPNLKIPG N+PIP+     +        PVD+T
Sbjct:   612 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 662

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-070928-1 sf3b2 "splicing factor 3b, subunit 2" [Danio rerio (taxid:7955)]

 Score = 687 (246.9 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 134/212 (63%), Positives = 163/212 (76%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LSKK+ +   R+ +AE+K+  +RPDVVE+ D TA +PKLLV LKA RNTVPVPRHWC KR
Sbjct:   375 LSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKR 434

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+LQGKRGI K PF LP+FI  TGI+++R+A  EKED+K +K K  E+++P+M K+DIDY
Sbjct:   435 KYLQGKRGIEKPPFELPEFIRRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDY 494

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
               L+DAFFK+Q KPKLT HGDLYYEGKEFE + L E KP  LS ELR ALG+P   +   
Sbjct:   495 QKLHDAFFKWQIKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRVALGMPTGPNSHK 553

Query:   180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
               PP+L  MQRYG PPSYPNLKIPG NAPIP+
Sbjct:   554 VPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPE 585

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0284555 sf3b2 "splicing factor 3B subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 639 (230.0 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
 Identities = 123/211 (58%), Positives = 152/211 (72%)

Query:     1 KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
             K LS K +K  R++ +  +K+   RPDVVE+ D  + +P  L+ +K+YRNT+PVP HWCQ
Sbjct:   167 KKLSNKERKRQRKLHLPILKQLVDRPDVVELHDVNSPNPGYLIAMKSYRNTIPVPAHWCQ 226

Query:    61 KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
             K+K+LQGKRG  K PF LP FIAATGI K+R+A  EKE   K KQKQ ER+QP+++KM I
Sbjct:   227 KKKYLQGKRGFVKPPFELPSFIAATGITKIREAILEKEKEMKSKQKQRERVQPKIRKMGI 286

Query:   121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
             DY  L DAFF +QTKP L+  GDLYYEGKEFEV  L   KP  LS EL+ ALG+ +   P
Sbjct:   287 DYEVLRDAFFVHQTKPNLSIQGDLYYEGKEFEVN-LKNKKPGVLSDELKRALGMIEGYPP 345

Query:   181 PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEA 211
             P+L  MQ YG PPSYPNLKIPG N+PIP+ A
Sbjct:   346 PWLIYMQTYGPPPSYPNLKIPGVNSPIPEGA 376

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

WB|WBGene00021004 W03F9.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 114/212 (53%), Positives = 151/212 (71%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LS+++ +   +  IA++K    R DVVE  D T+ DP LLV +K+YRN+VPVPRHW  KR
Sbjct:   147 LSRRKLRISLQPSIAKLKETTLRADVVEWADVTSRDPYLLVAMKSYRNSVPVPRHWNAKR 206

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+L GKRG  + PF LPDFI  TGI+ +R+A  EKE+S+ LK K  ER +P++ K+DIDY
Sbjct:   207 KYLAGKRGFERPPFELPDFIKRTGIQDMREALLEKEESQSLKSKMRERARPKLGKIDIDY 266

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
               L+DAFFK+QTKP +T  G+LYYEGKE E   + + KP  +S ELR ALG+P  ++   
Sbjct:   267 QKLHDAFFKWQTKPAMTKMGELYYEGKEMEA-MMRDKKPGEMSDELRIALGMPIGSNAFK 325

Query:   180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
               PP+L  MQRYG PPS+P++KIPG NAPIP+
Sbjct:   326 FPPPWLIAMQRYGPPPSFPHIKIPGLNAPIPE 357

GO:0005634 "nucleus" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

UNIPROTKB|O16997 W03F9.10 "Protein W03F9.10" [Caenorhabditis elegans (taxid:6239)]

 Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 114/212 (53%), Positives = 151/212 (71%)

Query:     3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
             LS+++ +   +  IA++K    R DVVE  D T+ DP LLV +K+YRN+VPVPRHW  KR
Sbjct:   147 LSRRKLRISLQPSIAKLKETTLRADVVEWADVTSRDPYLLVAMKSYRNSVPVPRHWNAKR 206

Query:    63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
             K+L GKRG  + PF LPDFI  TGI+ +R+A  EKE+S+ LK K  ER +P++ K+DIDY
Sbjct:   207 KYLAGKRGFERPPFELPDFIKRTGIQDMREALLEKEESQSLKSKMRERARPKLGKIDIDY 266

Query:   123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
               L+DAFFK+QTKP +T  G+LYYEGKE E   + + KP  +S ELR ALG+P  ++   
Sbjct:   267 QKLHDAFFKWQTKPAMTKMGELYYEGKEMEA-MMRDKKPGEMSDELRIALGMPIGSNAFK 325

Query:   180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
               PP+L  MQRYG PPS+P++KIPG NAPIP+
Sbjct:   326 FPPPWLIAMQRYGPPPSFPHIKIPGLNAPIPE 357

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI000282	hypothetical protein (588 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00440042	hypothetical protein (2357 aa)				•	•	•	•		0.685
	eugene3.00170116	hypothetical protein (1268 aa)				•	•	•	•		0.537
	estExt_Genewise1_v1.C_LG_XIII3357	hypothetical protein (820 aa)				•	•	•			0.512

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
pfam04037	129	pfam04037, DUF382, Domain of unknown function (DUF	1e-71
COG5182	429	COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA	6e-67
pfam04046	48	pfam04046, PSP, PSP	5e-18
smart00581	54	smart00581, PSP, proline-rich domain in spliceosom	2e-15

>gnl|CDD|112836 pfam04037, DUF382, Domain of unknown function (DUF382)

 Score =  218 bits (558), Expect = 1e-71
 Identities = 90/129 (69%), Positives = 102/129 (79%)

Query: 23  CSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFI 82
             RP++VE WD TA DP LLV LK+ RNTVPVPRHW QKRK+L GKRGI K PF LPDFI
Sbjct: 1   VPRPELVEWWDVTAPDPYLLVALKSQRNTVPVPRHWSQKRKYLSGKRGIEKPPFELPDFI 60

Query: 83  AATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHG 142
            ATGI ++R A  EKE  K LKQKQ ER+QP+M K+DIDY  L+DAFFKYQTKP LT +G
Sbjct: 61  EATGIAEMRDALLEKEAEKTLKQKQRERVQPKMGKLDIDYQKLHDAFFKYQTKPDLTKYG 120

Query: 143 DLYYEGKEF 151
           D+YYEGKEF
Sbjct: 121 DVYYEGKEF 129

This domain is specific to the human splicing factor 3b subunit 2 and it's orthologues. Splicing factor 3b subunit 2 or SAP145 is a suppressor of U2 snRNA mutations. Pre-mRNA splicing is catalyzed by a large ribonucleoprotein complex called the spliceosome. Spliceosomes are multi-component enzymes that catalyze pre-mRNA splicing and form step-wise by the ordered interaction of UsnRNPs and non-snRNP proteins with short conserved regions of the pre-mRNA at the 5' and 3' splice sites and branch site. Length = 129

>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and modification]

 Score =  217 bits (553), Expect = 6e-67
 Identities = 104/292 (35%), Positives = 150/292 (51%), Gaps = 10/292 (3%)

Query: 3   LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
           LS+++K+   + R  ++K     P++ E  DAT  DP  L  +K   N VPVPRHW  K 
Sbjct: 123 LSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKS 182

Query: 63  KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
           ++L G      +PF LP  I  TGI ++R+   E+E    L+++  ER+QP+M  +D+DY
Sbjct: 183 RYLSGHGYHKPRPFELPRHIIGTGIPQMRRMMREREAGMSLRERIRERVQPKMGGLDVDY 242

Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPY 182
             L+DAFF    KP L+  G+ Y E      + + + +P  +S ELREALGI     PP+
Sbjct: 243 RKLHDAFFSLGPKPYLSKFGEFYEEVDNDY-RFVKKKRPGAISAELREALGIDSGTPPPW 301

Query: 183 LRNMQRYGAPPSYPNLKIPGFN-APIPQEAD------KPHVVDTEPVDKTRHWGDLEEAE 235
           L NMQ++G PPSYP+LKIPG N APIP E D               V      G+L + E
Sbjct: 302 LFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPLFEVGPETAEGELLQFE 361

Query: 236 -DEIEEELEDGIESVESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTVKRV 286
            +EI  + E     V  + ++ E  +  V        AP  + V      +V
Sbjct: 362 AEEIYNDEEQYTRPV-YENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAKV 412

Length = 429

>gnl|CDD|202864 pfam04046, PSP, PSP

 Score = 76.4 bits (189), Expect = 5e-18
 Identities = 32/48 (66%), Positives = 37/48 (77%)

Query: 160 KPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPI 207
           KP  LS ELREALG+P+   PP+L  M+R G PPSYP+LKIPG NAPI
Sbjct: 1   KPGVLSDELREALGMPEGDPPPWLYRMRRLGYPPSYPDLKIPGLNAPI 48

Proline rich domain found in numerous spliceosome associated proteins. Length = 48

>gnl|CDD|128850 smart00581, PSP, proline-rich domain in spliceosome associated proteins

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 31/51 (60%), Positives = 35/51 (68%)

Query: 158 EMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIP 208
             KP  +S ELREALG+P    PP+L  M+R G PP YP LKIPG NAPIP
Sbjct: 3   HFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPRLKIPGLNAPIP 53

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG2330	500	consensus Splicing factor 3b, subunit 2 [RNA proce	100.0
COG5182	429	CUS1 Splicing factor 3b, subunit 2 [RNA processing	100.0
PF04037	129	DUF382: Domain of unknown function (DUF382) ; Inte	100.0
smart00581	54	PSP proline-rich domain in spliceosome associated	99.95
PF04046	48	PSP: PSP; InterPro: IPR006568 PSP is a proline-ric	99.92
KOG2673	485	consensus Uncharacterized conserved protein, conta	99.02

>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=4.9e-125  Score=930.34  Aligned_cols=318  Identities=52%  Similarity=0.832  Sum_probs=284.8

Q ss_pred             CCChhHHHhhcCCCHHHHHhhcCCCCeEEeecCCCCChHHHHHHhhcCCCccCCccccchhccccCccCCCCCCCCCcHH
Q 038777            2 GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDF   81 (361)
Q Consensus         2 ~lSkkk~r~~~r~svaeLK~~v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieKppf~LP~~   81 (361)
                      .|||||+|++.|+|||+||++|.||||||||||||.||.|||+||+|+|+||||+|||+||+||||+||||||||+||+|
T Consensus       115 klskrklRk~~r~svaeLK~~v~~pdvvE~~Dvta~dP~ll~~lK~~~n~VPVPrHW~~kr~yl~G~rg~ekppfelP~~  194 (500)
T KOG2330|consen  115 KLSKRKLRKLLRPSVAELKQLVPYPDVVEWHDVTARDPKLLVHLKAYRNSVPVPRHWNSKRKYLSGKRGIEKPPFELPDF  194 (500)
T ss_pred             hhhHHHHHHhhcccHHHHhhcCCccceeeeeccCCCChHHHHHhhhccCCCcCchhhhhhhhhhccccccCCCCccchHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhChHHHHhhhhhhhhhHHHHHHHhhhcCCCCCccCCChHHHHHHHhccCCCCCCCCCCcccccchhhhhhhhccCCC
Q 038777           82 IAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKP  161 (361)
Q Consensus        82 I~~TGI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKE~e~~~~~~~kP  161 (361)
                      |+.|||++||+++.|+|+++|||++||||||||||++|||||+||||||+|||||.||.||||||||||+|.. +++++|
T Consensus       195 Ik~TgI~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke~e~~-~k~k~P  273 (500)
T KOG2330|consen  195 IKKTGIQEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKELEAM-VKEKKP  273 (500)
T ss_pred             HHhcCHHHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchhHHHH-HhhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988 999999


Q ss_pred             CcccHHHHHHhCCCCCCCchHHHHHhhcCCCCCCCCCccccCCCCCCCCCC-------CCCCCC----------------
Q 038777          162 CTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEAD-------KPHVVD----------------  218 (361)
Q Consensus       162 G~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPsYp~LkIpGLNapip~g~~-------kppvd~----------------  218 (361)
                      |.||+|||+||||+.+.|||||++||+||||||||||||||||||||+||+       --|||+                
T Consensus       274 G~iS~eLr~aLgmp~g~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWGpVDe~g~PLygDVfG~~~p~  353 (500)
T KOG2330|consen  274 GDISDELRIALGMPVGTPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWGPVDEFGKPLYGDVFGLNIPE  353 (500)
T ss_pred             cchhHHHHHHhCCCCCCCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCccccccCCccchhcccccccc
Confidence            999999999999999999999999999999999999999999999999999       227772                


Q ss_pred             ------CCccCCCCCCcCCCccchhhhhh-------------hc-------------------cCcccccc--ccc----
Q 038777          219 ------TEPVDKTRHWGDLEEAEDEIEEE-------------LE-------------------DGIESVES--QRK----  254 (361)
Q Consensus       219 ------~~~v~~~~~WG~l~~eeeeeeee-------------~~-------------------~g~~t~~~--~rk----  254 (361)
                            +..+++ .|||+|+++++|++|+             ++                   +|++||+.  +||    
T Consensus       354 ~~~~t~es~~~r-n~wgel~~e~~E~~EEreeee~~d~~~~~e~gg~~dp~d~~~~~~Lts~ptgiEtpd~iELRK~k~e  432 (500)
T KOG2330|consen  354 HHNGTKESEIER-NHWGELESEEEESSEEREEEEREDKNDASENGGAVDPADDIVPSGLTSFPTGIETPDAIELRKKKRE  432 (500)
T ss_pred             cccccccccccc-ccccccccccchhhhhhhhhhhhhhhhhhhccccCCccccccccccccCCccccChhHHHHHhhccc
Confidence                  223446 5999998654332111             01                   13333333  554    


Q ss_pred             CCCCccceecccccccccCCccccccceecccccccCCCCCCeeeecCchhhccccchhHHHHHHHHHHh
Q 038777          255 EPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEE  324 (361)
Q Consensus       255 ~~~~~ly~Vl~ek~~~~~~~~~~gs~~~Y~~~~~~~~~~~~~v~v~l~p~el~~~~~~l~~~ye~~~~~~  324 (361)
                      +++|.||||||||.+++.||+||||+|+|+...... .+.+||++||||++|+.++.+|  +||+++++|
T Consensus       433 e~~r~LYqVLpEK~t~~igg~mmgstH~Ydis~~~a-~k~~GV~~sL~Peeld~d~~~l--~yee~~req  499 (500)
T KOG2330|consen  433 EETRALYQVLPEKRTSRIGGTMMGSTHTYDISTGTA-DKTPGVEFSLDPEELDADGMAL--RYEEQRREQ  499 (500)
T ss_pred             cccHHHHHhccccccccccceeeccceEEecccccc-ccCCCceeecChhhhccchhhH--HHHHHHhhc
Confidence            457899999999999988899999999999654332 2345799999999999888888  899999986

>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-89  Score=664.60  Aligned_cols=235  Identities=40%  Similarity=0.641  Sum_probs=219.4

Q ss_pred             CCChhHHHhhcCCCHHHHHhhcCCCCeEEeecCCCCChHHHHHHhhcCCCccCCccccchhccccCccCCCCCCCCCcHH
Q 038777            2 GLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDF   81 (361)
Q Consensus         2 ~lSkkk~r~~~r~svaeLK~~v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieKppf~LP~~   81 (361)
                      .||++|+|+..++++++||.+|.+|+|||||||||+||.||.+||++.|+||||+||++|++||||.+++++.||+||++
T Consensus       122 ~ls~~k~Rk~~~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~ylsg~~~~~~r~felP~~  201 (429)
T COG5182         122 SLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSRYLSGHGYHKPRPFELPRH  201 (429)
T ss_pred             hhHHHHHHHHhhhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhhcccccccCCCCcccchHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhChHHHHhhhhhhhhhHHHHHHHhhhcCCCCCccCCChHHHHHHHhccCCCCCCCCCCcccccchhhhhhhhccCCC
Q 038777           82 IAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKP  161 (361)
Q Consensus        82 I~~TGI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKE~e~~~~~~~kP  161 (361)
                      |..|||.+||+++.|.|++++|++++|||||||||++||||++||||||++|+||.||.|||+||||++.+.- .++++|
T Consensus       202 I~~TgI~qmR~~~~e~ea~msLre~~RervqPkmG~ldvDy~kLhdaFF~~g~kP~L~~fGe~y~e~~n~~~~-vk~krP  280 (429)
T COG5182         202 IIGTGIPQMRRMMREREAGMSLRERIRERVQPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRF-VKKKRP  280 (429)
T ss_pred             HhhcChHHHHHhhhhccccCcHHHHHHHhhCccccccchhHHHHHHHHHhcCCCcccccccceeeccchHHHH-HhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988765 789999


Q ss_pred             CcccHHHHHHhCCCCCCCchHHHHHhhcCCCCCCCCCccccCC-CCCC-CCCC----CCCCCC--CCccCCCCCCcCCCc
Q 038777          162 CTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFN-APIP-QEAD----KPHVVD--TEPVDKTRHWGDLEE  233 (361)
Q Consensus       162 G~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPsYp~LkIpGLN-apip-~g~~----kppvd~--~~~v~~~~~WG~l~~  233 (361)
                      |.||.|||+||||++++|||||++||+||+|||||+||||||| ++|| .||.    +|-.-+  .+++.. .+||+|.+
T Consensus       281 G~IS~eLrealgi~~g~pPPWlf~Mq~~G~PpsYPDlkIpGlNW~~~pL~GdvyG~~~p~~h~~~~~~~~~-~~~gel~~  359 (429)
T COG5182         281 GAISAELREALGIDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPLFEVGPE-TAEGELLQ  359 (429)
T ss_pred             cchHHHHHHHhCCCCCCCChHHHhhhhcCCCCCCccccCCCCCCCCcccccccccccCCCcCCccCCcCcc-hhhhhhhh
Confidence            9999999999999999999999999999999999999999999 6778 7887    332222  344555 59999976


Q ss_pred             cchhh
Q 038777          234 AEDEI  238 (361)
Q Consensus       234 eeeee  238 (361)
                      .|+||
T Consensus       360 fe~ee  364 (429)
T COG5182         360 FEAEE  364 (429)
T ss_pred             ccchh
Confidence            65443

>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs

Probab=100.00  E-value=5.7e-76  Score=505.51  Aligned_cols=129  Identities=74%  Similarity=1.171  Sum_probs=128.0

Q ss_pred             cCCCCeEEeecCCCCChHHHHHHhhcCCCccCCccccchhccccCccCCCCCCCCCcHHHHhhChHHHHhhhhhhhhhHH
Q 038777           23 CSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKK  102 (361)
Q Consensus        23 v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieKppf~LP~~I~~TGI~emR~a~~eke~~~s  102 (361)
                      |.+|||||||||||+||+|||+|||++||||||+|||+||+|||||||+|||||+||+||++|||++||+|+.|+|+++|
T Consensus         1 V~~PevVE~~D~~a~DP~lLv~lKs~rNtVPVP~HW~~Kr~YL~gkrg~eKppf~LP~~I~~TgI~emR~~~~e~e~~~s   80 (129)
T PF04037_consen    1 VPRPEVVEWHDVTAPDPRLLVHLKSYRNTVPVPRHWSQKRKYLQGKRGIEKPPFQLPDFIKDTGIEEMRQALPEKEDEKS   80 (129)
T ss_pred             CCCCceEEeecCCCCChHHHHHHHhcCCCCCCCcchhhhhhhhcccccccCCCCcCCHHHHHHCcHHHHHHhhcccchhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCCccCCChHHHHHHHhccCCCCCCCCCCcccccchhh
Q 038777          103 LKQKQSERMQPRMKKMDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEF  151 (361)
Q Consensus       103 LKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKE~  151 (361)
                      |||+||||||||||+||||||+||||||+|||||.||.|||+|||||||
T Consensus        81 lKqk~RervqPKmGkldIDYq~LhdAFFk~qtKP~l~~~Gd~YyEgkef  129 (129)
T PF04037_consen   81 LKQKQRERVQPKMGKLDIDYQKLHDAFFKFQTKPKLTKFGDLYYEGKEF  129 (129)
T ss_pred             HHHHHHHHhCcccCcccccHHHHHHHHHhccCCCCcccccceeeccccC
Confidence            9999999999999999999999999999999999999999999999997

; GO: 0005634 nucleus

>smart00581 PSP proline-rich domain in spliceosome associated proteins

Probab=99.95  E-value=2.1e-28  Score=184.54  Aligned_cols=54  Identities=57%  Similarity=1.037  Sum_probs=52.2

Q ss_pred             hccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCCCCCCccccCCCCCCC
Q 038777          156 LMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ  209 (361)
Q Consensus       156 ~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPsYp~LkIpGLNapip~  209 (361)
                      +++++||+||++||+||||+++++||||++||++|+|||||+|+||||||+||.
T Consensus         1 ~~~~kPG~lS~~LR~ALG~~~~~pPPWl~~Mq~~G~PPsYp~l~ipglna~ip~   54 (54)
T smart00581        1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPRLKIPGLNAPIPL   54 (54)
T ss_pred             CCCccCCcCCHHHHHHcCCCCCCCChHHHHHHHHCCCCCCcccccCCCCCCCCC
Confidence            468999999999999999999999999999999999999999999999999984

>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins

Probab=99.92  E-value=1.4e-25  Score=165.85  Aligned_cols=48  Identities=63%  Similarity=1.104  Sum_probs=47.4

Q ss_pred             CCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCCCCCCccccCCCCC
Q 038777          160 KPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPI  207 (361)
Q Consensus       160 kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPsYp~LkIpGLNapi  207 (361)
                      |||+||++||+||||+++++||||++||++|+|||||+++|||+|++|
T Consensus         1 kPG~lS~~LR~ALg~~~~~~PPwl~~M~~~G~PP~y~~~ki~g~n~~i   48 (48)
T PF04046_consen    1 KPGKLSDELREALGMQENDPPPWLYRMRRLGYPPGYPDLKIPGLNAPI   48 (48)
T ss_pred             CCcccCHHHHHHcCCCCCCCChHHHHHHhcCCCCCCccccccCCCCCC
Confidence            799999999999999999999999999999999999999999999997

>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]

Probab=99.02  E-value=1.5e-10  Score=117.53  Aligned_cols=57  Identities=32%  Similarity=0.517  Sum_probs=48.5

Q ss_pred             CCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCCCC
Q 038777          138 LTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSYP  196 (361)
Q Consensus       138 Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPsYp  196 (361)
                      |+.=-..||---+-- + ..++|||+||.+||.|||+.+++||+|+++|+++||||+|.
T Consensus       161 ~~~rnqry~~~teq~-r-e~h~KPG~lS~~~R~al~l~~~d~P~~~yRMR~lGYPPg~L  217 (485)
T KOG2673|consen  161 MVFRNQRYYQDTEQG-R-EDHFKPGVLSGNTRSALGLSPGDPPEWKYRMRRLGYPPGYL  217 (485)
T ss_pred             ccccceeeeeecchh-h-hcccCCcccchhHHHhhcCCCCCchHHHHHHhhccCCchhh
Confidence            444444677665543 4 78999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 47/331 (14%), Positives = 103/331 (31%), Gaps = 88/331 (26%)

Query: 77  HLPDF----IAATGIEKVRQACNEKEDSKKL----KQKQSERMQPRMKK-MDIDYPALYD 127
            + D     ++   I+ +  + +    + +L      KQ E +Q  +++ + I+Y  L  
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 128 AFFKYQTKPKLTT------HGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
                Q +P + T         LY + + F    +  ++P     +LR+AL         
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLE------- 146

Query: 182 YLRNMQR---YGAPPSYPNLKIPGFN----APIPQEADKPHVVDTEPVDKTRHW---GDL 231
            LR  +     G         + G      A    +    + V  +   K   W    + 
Sbjct: 147 -LRPAKNVLIDG---------VLGSGKTWVA---LDVCLSYKVQCKMDFKI-FWLNLKNC 192

Query: 232 EEAEDEIE--EELEDGIESVESQRKEPERTLYQVLEEKEERIA--------PRTL----- 276
              E  +E  ++L   I+   + R +    +   +   +  +            L     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 277 ----------------LVTTHTVKRVDLLKGQQTDRV------DAILQPEELEVMDNVLP 314
                           L+TT   +  D L    T  +        +   E   ++   L 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 315 AKYEEAKQEEKLHSQRQDFSGMVAENEKKRK 345
            + ++  +E    + R+    ++AE+ +   
Sbjct: 313 CRPQDLPREVLTTNPRR--LSIIAESIRDGL 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 57/399 (14%), Positives = 114/399 (28%), Gaps = 127/399 (31%)

Query: 12  RRMRIAEVKRYCSRPDVV-EVWDATAADP-----KLLV---------FLKAYRNTVPVPR 56
              R+ + K Y +   V+  V +A A +      K+L+         FL A   T     
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 57  HWCQKRKFLQGK------RGIGKQPFHLPDFIAATGIEKVRQAC---------------N 95
           H          +      + +  +P  LP           R+                 +
Sbjct: 293 H--HSMTLTPDEVKSLLLKYLDCRPQDLP-----------REVLTTNPRRLSIIAESIRD 339

Query: 96  EKEDSKKLKQKQSERMQPRMKKMDIDY--PA----LYDAF--FKYQTKPKLTTHGDLYYE 147
                   K    +++   + +  ++   PA    ++D    F             ++++
Sbjct: 340 GLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 148 GKEFEV---------KQLMEMKPCTLSYELREALGIPDV-----ASPPYLRNM-----QR 188
             + +V           L+E +P   +        IP +             +       
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDH 452

Query: 189 YGAPPSYPNLKIPGFNAPIPQEADK---PHVVDTEPVDKTRHWGDLEEAEDEIEEE---- 241
           Y  P ++ +      +  IP   D+    H+          H  ++E  E          
Sbjct: 453 YNIPKTFDS------DDLIPPYLDQYFYSHIG--------HHLKNIEHPERMTLFRMVFL 498

Query: 242 ----LEDGIESVESQRKEPERTL--YQVLEEKEERIAP----RTLLVTT--HTVKRV--D 287
               LE  I    +        L   Q L+  +  I         LV      + ++  +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 288 LLKGQQTDRVDAILQPEELEVMDNVLPAKYEEA-KQEEK 325
           L+  + TD +   L  E+  +        +EEA KQ ++
Sbjct: 559 LICSKYTDLLRIALMAEDEAI--------FEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 71/453 (15%), Positives = 121/453 (26%), Gaps = 181/453 (39%)

Query: 15  RIAEVKRYCSRPDV--VEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRK--------- 63
            I   +R  S      +E  D    D +  VF K   N V   + + + R+         
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAK--YN-VSRLQPYLKLRQALLELRPAK 151

Query: 64  --FLQGKRGIGKQ----------------PFH---------------------LPDFIAA 84
              + G  G GK                  F                      L   I  
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 85  TGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKM------DIDYPALYDAF-FKYQT--- 134
               +   + N K     ++ +    ++ +  +       ++     ++AF    +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 135 ----------KPKLTTHGDLYYEGKEF---EVKQL----MEMKPCTLSYELREALGI-P- 175
                         TTH  L +        EVK L    ++ +P  L    RE L   P 
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPR 328

Query: 176 -----------------------------------DVASPPYLRNMQRYGAPPSYPNLKI 200
                                              +V  P   R M        +  L +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--------FDRLSV 380

Query: 201 PGF--NAPIPQEADKPHVVDTEPVDKTRHWGDLEEAEDE-IEEELEDGIES-VESQRKEP 256
             F  +A IP       ++       +  W D+ +++   +  +L     S VE Q KE 
Sbjct: 381 --FPPSAHIP-----TILL-------SLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKES 424

Query: 257 ERTLYQV-LEEKEERIAPRTLLVTTHT--VKRVDLLKGQQTDRVDAILQPEELEVMDNVL 313
             ++  + LE K +      L    H   V   ++ K   +D  D I         D   
Sbjct: 425 TISIPSIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSD--DLIPPYL-----DQ-- 471

Query: 314 PAKY---------EEAKQEEKLHSQRQ---DFS 334
              Y         +  +  E++   R    DF 
Sbjct: 472 ---YFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00